The people at the Advanced Research Computing center at my University are trying to help me install YADE on the HPC. The following is message that I received from them. Can anyone help them address this issue? Thank you so much!
I configure using the following and that does get me a build environment
cmake -DPYTHON_VERSION=3.7.6 -DENABLE_VTK=off -DUSE_QT5=off -DENABLE_GUI=off -DENABLE_GTS=off -DENABLE_CGAL=off -DENABLE_PFVFLOW=off -DCMAKE_INSTALL_PREFIX=../install ../trunk
But when running make it gets to 92% then fails with a numpy error.
I will continue to work with this. Also if you have any other suggegestions that would be great.
[ 92%] Building CXX object py/CMakeFiles/_utils.dir/_utils.cpp.o
In file included from /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
from /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /scratch/st-apeirce-1/myYade/trunk/py/_utils.cpp:8:
/arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^
In file included from /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/boost-1.73.0-uc6u5oumzasbqciah7s3kcrdyvomakyk/include/boost/python/exception_translator.hpp:10:0,
from /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/boost-1.73.0-uc6u5oumzasbqciah7s3kcrdyvomakyk/include/boost/python.hpp:28,
from /scratch/st-apeirce-1/myYade/trunk/lib/base/Math.hpp:25,
from /scratch/st-apeirce-1/myYade/trunk/lib/computational-geometry/Hull2d.hpp:3,
from /scratch/st-apeirce-1/myYade/trunk/py/_utils.hpp:4,
from /scratch/st-apeirce-1/myYade/trunk/py/_utils.cpp:1:
/arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/boost-1.73.0-uc6u5oumzasbqciah7s3kcrdyvomakyk/include/boost/bind.hpp:41:273: note: #pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.
In file included from /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:21:0,
from /arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /scratch/st-apeirce-1/myYade/trunk/py/_utils.cpp:8:
/arc/software/spack-0.14.0-110/opt/spack/linux-centos7-broadwell/gcc-5.4.0/py-numpy-1.18.1-s25izmnxfevo37f4smdmmybifn7e4poo/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: error: 'int _import_array()' defined but not used [-Werror=unused-function]
_import_array(void)
^
cc1plus: all warnings being treated as errors
make[2]: *** [py/CMakeFiles/_utils.dir/_utils.cpp.o] Error 1
make[1]: *** [py/CMakeFiles/_utils.dir/all] Error 2
make: *** [all] Error 2
[anajmul@login03 build]$
Thank you!
