Compilation error - yadeWrapperAny idea

Asked by Luc Scholtès on 2019-11-07

Hi all,

I just downloaded the latest trunk from gitlab and got this error message at 97% compilation:

[ 97%] Linking CXX shared library lib/x86_64-linux-gnu/_packPredicates.so
/media/scholtes/sdb/yade/sources/trunk/trunk/py/wrapper/yadeWrapper.cpp: In member function ‘PyObject* yade::pyOmega::bufferFromIntrsct(const boost::shared_ptr<yade::Subdomain>&, unsigned int, unsigned int, bool)’:
/media/scholtes/sdb/yade/sources/trunk/trunk/py/wrapper/yadeWrapper.cpp:728:136: error: ‘PyMemoryView_FromMemory’ was not declared in this scope
    return PyMemoryView_FromMemory((char*) (subD->intersections[rank].data()), subD->intersections[rank].size()*sizeof(Body::id_t),PyBUF_WRITE);}
                                                                                                                                        ^
/media/scholtes/sdb/yade/sources/trunk/trunk/py/wrapper/yadeWrapper.cpp:731:145: error: ‘PyMemoryView_FromMemory’ was not declared in this scope
    return PyMemoryView_FromMemory((char*) &(subD->mirrorIntersections[rank][0]), subD->mirrorIntersections[rank].size()*sizeof(Body::id_t),PyBUF_WRITE);}
                                                                                                                                                 ^
[ 97%] Built target _packPredicates
py/CMakeFiles/wrapper.dir/build.make:62: recipe for target 'py/CMakeFiles/wrapper.dir/wrapper/yadeWrapper.cpp.o' failed

I am on Ubuntu 16.04.06 and here is what cmake returned:

-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Version is set to 2019-11-05.git-35899c7
-- GCC Version >= 4.8. Adding -ftrack-macro-expansion=0
-- GCC Version >= 4.8. Adding -save-temps
-- GCC Version >= 4.9. Adding -fstack-protector-strong
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
-- Log filtering: enabled
-- Enabling boost::log library and DEBUG=OFF. Logging will work nicely, backtraces will not have debug info, files will be small.
Loop on the following python versions and check available dependencies:3.8;3.7;3.6;3.5;3.4;3.3;3.2;3.1;3.0;2.7;2.6
-- Found PythonInterp: /usr/bin/python (found version "2.7.12")
-- Found PythonInterp: /usr/bin/python3.5 (found version "3.5.2")
Python version 3.5.2 found, try to import dependencies...
-- Found NumPy: version "1.11.0" /usr/lib/python3/dist-packages/numpy/core/include
-- Found IPython: /usr/lib/python3/dist-packages/IPython
-- Found matplotlib: /usr/lib/python3/dist-packages/matplotlib
-- Found pygraphviz: /usr/lib/python3/dist-packages/pygraphviz
-- Found Xlib: /usr/lib/python3/dist-packages/Xlib
-- Found minieigen: /usr/lib/python3/dist-packages/minieigen.cpython-35m-x86_64-linux-gnu.so
-- Could NOT find future (missing: PY_future)
Failed to import dependencies for Python version 3.5.2. NOT FOUND:future
-- Found PythonInterp: /usr/bin/python (found version "2.7.12")
-- Found PythonInterp: /usr/bin/python2.7 (found version "2.7.12")
Python version 2.7.12 found, try to import dependencies...
-- Found NumPy: version "1.11.0" /usr/lib/python2.7/dist-packages/numpy/core/include
-- Found IPython: /usr/lib/python2.7/dist-packages/IPython
-- Found matplotlib: /usr/lib/python2.7/dist-packages/matplotlib
-- Found pygraphviz: /usr/lib/python2.7/dist-packages/pygraphviz
-- Found Xlib: /usr/lib/python2.7/dist-packages/Xlib
-- Found minieigen: /usr/lib/python2.7/dist-packages/minieigen.so
-- Found future: /usr/lib/python2.7/dist-packages/future
-- Found past: /usr/lib/python2.7/dist-packages/past
-- Found Tkinter: /usr/lib/python2.7/lib-tk/Tkinter.pyc
-- Boost_VERSION: 105800
-- Boost_LIB_VERSION: 1_58
-- Boost_INCLUDE_DIRS: /usr/include
-- Boost_LIBRARIES: /usr/lib/x86_64-linux-gnu/libboost_python-py27.so/usr/lib/x86_64-linux-gnu/libboost_thread.so/usr/lib/x86_64-linux-gnu/libboost_filesystem.so/usr/lib/x86_64-linux-gnu/libboost_iostreams.so/usr/lib/x86_64-linux-gnu/libboost_regex.so/usr/lib/x86_64-linux-gnu/libboost_serialization.so/usr/lib/x86_64-linux-gnu/libboost_system.so/usr/lib/x86_64-linux-gnu/libboost_date_time.so/usr/lib/x86_64-linux-gnu/libboost_log.so/usr/lib/x86_64-linux-gnu/libboost_chrono.so/usr/lib/x86_64-linux-gnu/libboost_atomic.so/usr/lib/x86_64-linux-gnu/libboost_log_setup.so/usr/lib/x86_64-linux-gnu/libpthread.so
Found all python dependencies with version 2.7.12, will compile yade with that.
-- Chosen compiler flags are: CMAKE_CXX_FLAGS = -fPIC -O2 --param=ssp-buffer-size=4 -Werror -Wformat -Wformat-security -Wformat-nonliteral -Wall -Wextra -Wnarrowing -Wreturn-type -Wuninitialized -Wfloat-conversion -Wcast-align -Wdisabled-optimization -Wtrampolines -Wpointer-arith -Wswitch-bool -Wwrite-strings -Wnon-virtual-dtor -Wno-error=maybe-uninitialized -Wno-comment -Wno-float-conversion -Wno-unused-function -Wno-error=cpp -fdce
-- Found Loki: /usr/include
-- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8")
-- Found Eigen3, version: 3.2.92
-- Disable vectorization
-- The imported target "vtkRenderingPythonTkWidgets" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkRenderingPythonTkWidgets.so"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/cmake/vtk-6.2/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtk" references the file
   "/usr/bin/vtk"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/cmake/vtk-6.2/VTKTargets.cmake"
but not all the files it references.

-- Found VTK
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- Found OpenMP
-- GTS using gts-config /usr/bin/gts-config
-- Using GTS from /usr
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- Checking for one of the modules 'glib-2.0'
-- Found GLib2: glib-2.0 /usr/include/glib-2.0;/usr/lib/x86_64-linux-gnu/glib-2.0/include
-- Looking for include file glib/gregex.h
-- Looking for include file glib/gregex.h - not found
-- Found GTS
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so
-- Found GLUT: /usr/lib/x86_64-linux-gnu/libglut.so
-- USE QT5
-- Found QGLVIEWER-qt5: /usr/include/QGLViewer
-- Found GUI-Qt5-LIBS
-- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libgmpxx.so
-- Found GMP: /usr/include/x86_64-linux-gnu
-- Found CGAL: /usr/include, /usr/lib/x86_64-linux-gnu/libCGAL.so
-- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libgmpxx.so
-- Found CGAL
-- Using typical suitesparse path /usr
-- SuiteSparse version 4.4.6 found, CHOLMOD direct solver for CPU activated.
-- Found Cholmod: /usr/lib/x86_64-linux-gnu/libcholmod.so
-- Found OpenBlas: /usr/lib/libopenblas.so
-- BLAS_INCLUDE_DIR=/usr/include/openblas
-- Found Metis: /usr/include
-- Found Cholmod in /usr/lib/x86_64-linux-gnu/libcholmod.so
-- Found OpenBlas in /usr/lib/libopenblas.so
-- Found Metis in /usr/lib/x86_64-linux-gnu/libmetis.so
-- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so
-- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so
-- Found MPI4PY: /usr/lib/python2.7/dist-packages/mpi4py/include
-- MPI found
-- Found GL2PS: /usr/lib/libgl2ps.so
-- Found GL2PS
LBMFLOW is still experimental, building and running LBM engine are at your own risk!
-- BLAS_INCLUDE_DIR=/usr/include/openblas
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found Threads: TRUE
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Found OpenBlas
-- Found Lapack
-- CLP not found.
-- BLAS_INCLUDE_DIR=/usr/include/openblas
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- CLP NOT found
-- md5sum of freegult /usr/include/GL/freeglut_std.h is: 791a2febd8584ec530cdd7676191b6d5
-- freegult version is 2.8.1
Yade will be installed to /media/scholtes/sdb/yade/sources/trunk/install
-- Suffix is set to -2019-11-05.git-35899c7
-- LIBRARY_OUTPUT_PATH is set to lib/x86_64-linux-gnu
-- runtimePREFIX is set to /media/scholtes/sdb/yade/sources/trunk/install
-- Found gts: /usr/lib/python2.7/dist-packages/gts
-- Use system gts version
-- VTK version >5 and <8 is found
-- ===========================================================
-- Yade configured with following features: BoostLog Odeint VTK OpenMP GTS GUI-Qt5 CGAL PFVFLOW PFVFLOW LINSOLV MPI TWOPHASEFLOW FEMLIKE GL2PS LBMFLOW THERMAL PotentialParticles
-- Disabled features: CHOLMOD_GPU SPH DEFORM LIQMIGRATION MASK_ARBITRARY PROFILING PotentialBlocks
-- Using MAX_LOG_LEVEL=5, ENABLE_LOGGER=ON
-- Optimized build
-- ===========================================================
-- Configuring done
-- Generating done
-- Build files have been written to: /media/scholtes/sdb/yade/sources/trunk/build

Any suggestion?

Thanks

Luc

Question information

Language:
English Edit question
Status:
Solved
For:
Yade Edit question
Assignee:
No assignee Edit question
Solved by:
Luc Scholtès
Solved:
2019-11-07
Last query:
2019-11-07
Last reply:
2019-11-07
Deepak (deepak-kn1990) said : #1

Hi,

> return PyMemoryView_FromMemory ... is from python3[1], using python3
instead of 2.7 should fix it it.

[1]https://docs.python.org/3/c-api/memoryview.html

On Thu, Nov 7, 2019 at 10:18 AM Luc Scholtès <
<email address hidden>> wrote:

> New question #685676 on Yade:
> https://answers.launchpad.net/yade/+question/685676
>
> Hi all,
>
> I just downloaded the latest trunk from gitlab and got this error message
> at 97% compilation:
>
> [ 97%] Linking CXX shared library lib/x86_64-linux-gnu/_packPredicates.so
> /media/scholtes/sdb/yade/sources/trunk/trunk/py/wrapper/yadeWrapper.cpp:
> In member function ‘PyObject* yade::pyOmega::bufferFromIntrsct(const
> boost::shared_ptr<yade::Subdomain>&, unsigned int, unsigned int, bool)’:
> /media/scholtes/sdb/yade/sources/trunk/trunk/py/wrapper/yadeWrapper.cpp:728:136:
> error: ‘PyMemoryView_FromMemory’ was not declared in this scope
> return PyMemoryView_FromMemory((char*)
> (subD->intersections[rank].data()),
> subD->intersections[rank].size()*sizeof(Body::id_t),PyBUF_WRITE);}
>
> ^
> /media/scholtes/sdb/yade/sources/trunk/trunk/py/wrapper/yadeWrapper.cpp:731:145:
> error: ‘PyMemoryView_FromMemory’ was not declared in this scope
> return PyMemoryView_FromMemory((char*)
> &(subD->mirrorIntersections[rank][0]),
> subD->mirrorIntersections[rank].size()*sizeof(Body::id_t),PyBUF_WRITE);}
>
> ^
> [ 97%] Built target _packPredicates
> py/CMakeFiles/wrapper.dir/build.make:62: recipe for target
> 'py/CMakeFiles/wrapper.dir/wrapper/yadeWrapper.cpp.o' failed
>
> I am on Ubuntu 16.04.06 and here is what cmake returned:
>
> -- The C compiler identification is GNU 5.4.0
> -- The CXX compiler identification is GNU 5.4.0
> -- Check for working C compiler: /usr/bin/cc
> -- Check for working C compiler: /usr/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Version is set to 2019-11-05.git-35899c7
> -- GCC Version >= 4.8. Adding -ftrack-macro-expansion=0
> -- GCC Version >= 4.8. Adding -save-temps
> -- GCC Version >= 4.9. Adding -fstack-protector-strong
> -- Found Eigen3: /usr/include/eigen3 (Required is at least version
> "2.91.0")
> -- Log filtering: enabled
> -- Enabling boost::log library and DEBUG=OFF. Logging will work nicely,
> backtraces will not have debug info, files will be small.
> Loop on the following python versions and check available
> dependencies:3.8;3.7;3.6;3.5;3.4;3.3;3.2;3.1;3.0;2.7;2.6
> -- Found PythonInterp: /usr/bin/python (found version "2.7.12")
> -- Found PythonInterp: /usr/bin/python3.5 (found version "3.5.2")
> Python version 3.5.2 found, try to import dependencies...
> -- Found NumPy: version "1.11.0"
> /usr/lib/python3/dist-packages/numpy/core/include
> -- Found IPython: /usr/lib/python3/dist-packages/IPython
> -- Found matplotlib: /usr/lib/python3/dist-packages/matplotlib
> -- Found pygraphviz: /usr/lib/python3/dist-packages/pygraphviz
> -- Found Xlib: /usr/lib/python3/dist-packages/Xlib
> -- Found minieigen: /usr/lib/python3/dist-packages/
> minieigen.cpython-35m-x86_64-linux-gnu.so
> -- Could NOT find future (missing: PY_future)
> Failed to import dependencies for Python version 3.5.2. NOT FOUND:future
> -- Found PythonInterp: /usr/bin/python (found version "2.7.12")
> -- Found PythonInterp: /usr/bin/python2.7 (found version "2.7.12")
> Python version 2.7.12 found, try to import dependencies...
> -- Found NumPy: version "1.11.0"
> /usr/lib/python2.7/dist-packages/numpy/core/include
> -- Found IPython: /usr/lib/python2.7/dist-packages/IPython
> -- Found matplotlib: /usr/lib/python2.7/dist-packages/matplotlib
> -- Found pygraphviz: /usr/lib/python2.7/dist-packages/pygraphviz
> -- Found Xlib: /usr/lib/python2.7/dist-packages/Xlib
> -- Found minieigen: /usr/lib/python2.7/dist-packages/minieigen.so
> -- Found future: /usr/lib/python2.7/dist-packages/future
> -- Found past: /usr/lib/python2.7/dist-packages/past
> -- Found Tkinter: /usr/lib/python2.7/lib-tk/Tkinter.pyc
> -- Boost_VERSION: 105800
> -- Boost_LIB_VERSION: 1_58
> -- Boost_INCLUDE_DIRS: /usr/include
> -- Boost_LIBRARIES: /usr/lib/x86_64-linux-gnu/
> libboost_python-py27.so/usr/lib/x86_64-linux-gnu/libboost_thread.so/usr/lib/x86_64-linux-gnu/libboost_filesystem.so/usr/lib/x86_64-linux-gnu/libboost_iostreams.so/usr/lib/x86_64-linux-gnu/libboost_regex.so/usr/lib/x86_64-linux-gnu/libboost_serialization.so/usr/lib/x86_64-linux-gnu/libboost_system.so/usr/lib/x86_64-linux-gnu/libboost_date_time.so/usr/lib/x86_64-linux-gnu/libboost_log.so/usr/lib/x86_64-linux-gnu/libboost_chrono.so/usr/lib/x86_64-linux-gnu/libboost_atomic.so/usr/lib/x86_64-linux-gnu/libboost_log_setup.so/usr/lib/x86_64-linux-gnu/libpthread.so
> Found all python dependencies with version 2.7.12, will compile yade with
> that.
> -- Chosen compiler flags are: CMAKE_CXX_FLAGS = -fPIC -O2
> --param=ssp-buffer-size=4 -Werror -Wformat -Wformat-security
> -Wformat-nonliteral -Wall -Wextra -Wnarrowing -Wreturn-type -Wuninitialized
> -Wfloat-conversion -Wcast-align -Wdisabled-optimization -Wtrampolines
> -Wpointer-arith -Wswitch-bool -Wwrite-strings -Wnon-virtual-dtor
> -Wno-error=maybe-uninitialized -Wno-comment -Wno-float-conversion
> -Wno-unused-function -Wno-error=cpp -fdce
> -- Found Loki: /usr/include
> -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version
> "1.0.6")
> -- Looking for BZ2_bzCompressInit
> -- Looking for BZ2_bzCompressInit - found
> -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8")
> -- Found Eigen3, version: 3.2.92
> -- Disable vectorization
> -- The imported target "vtkRenderingPythonTkWidgets" references the file
> "/usr/lib/x86_64-linux-gnu/libvtkRenderingPythonTkWidgets.so"
> but this file does not exist. Possible reasons include:
> * The file was deleted, renamed, or moved to another location.
> * An install or uninstall procedure did not complete successfully.
> * The installation package was faulty and contained
> "/usr/lib/cmake/vtk-6.2/VTKTargets.cmake"
> but not all the files it references.
>
> -- The imported target "vtk" references the file
> "/usr/bin/vtk"
> but this file does not exist. Possible reasons include:
> * The file was deleted, renamed, or moved to another location.
> * An install or uninstall procedure did not complete successfully.
> * The installation package was faulty and contained
> "/usr/lib/cmake/vtk-6.2/VTKTargets.cmake"
> but not all the files it references.
>
> -- Found VTK
> -- Try OpenMP C flag = [-fopenmp]
> -- Performing Test OpenMP_FLAG_DETECTED
> -- Performing Test OpenMP_FLAG_DETECTED - Success
> -- Try OpenMP CXX flag = [-fopenmp]
> -- Performing Test OpenMP_FLAG_DETECTED
> -- Performing Test OpenMP_FLAG_DETECTED - Success
> -- Found OpenMP: -fopenmp
> -- Found OpenMP
> -- GTS using gts-config /usr/bin/gts-config
> -- Using GTS from /usr
> -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
> -- Checking for one of the modules 'glib-2.0'
> -- Found GLib2: glib-2.0
> /usr/include/glib-2.0;/usr/lib/x86_64-linux-gnu/glib-2.0/include
> -- Looking for include file glib/gregex.h
> -- Looking for include file glib/gregex.h - not found
> -- Found GTS
> -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so
> -- Found GLUT: /usr/lib/x86_64-linux-gnu/libglut.so
> -- USE QT5
> -- Found QGLVIEWER-qt5: /usr/include/QGLViewer
> -- Found GUI-Qt5-LIBS
> -- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so
> /usr/lib/x86_64-linux-gnu/libgmpxx.so
> -- Found GMP: /usr/include/x86_64-linux-gnu
> -- Found CGAL: /usr/include, /usr/lib/x86_64-linux-gnu/libCGAL.so
> -- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so
> /usr/lib/x86_64-linux-gnu/libgmpxx.so
> -- Found CGAL
> -- Using typical suitesparse path /usr
> -- SuiteSparse version 4.4.6 found, CHOLMOD direct solver for CPU
> activated.
> -- Found Cholmod: /usr/lib/x86_64-linux-gnu/libcholmod.so
> -- Found OpenBlas: /usr/lib/libopenblas.so
> -- BLAS_INCLUDE_DIR=/usr/include/openblas
> -- Found Metis: /usr/include
> -- Found Cholmod in /usr/lib/x86_64-linux-gnu/libcholmod.so
> -- Found OpenBlas in /usr/lib/libopenblas.so
> -- Found Metis in /usr/lib/x86_64-linux-gnu/libmetis.so
> -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so
> -- Found MPI_CXX:
> /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so
> -- Found MPI4PY: /usr/lib/python2.7/dist-packages/mpi4py/include
> -- MPI found
> -- Found GL2PS: /usr/lib/libgl2ps.so
> -- Found GL2PS
> LBMFLOW is still experimental, building and running LBM engine are at your
> own risk!
> -- BLAS_INCLUDE_DIR=/usr/include/openblas
> -- Looking for sgemm_
> -- Looking for sgemm_ - found
> -- Found Threads: TRUE
> -- A library with BLAS API found.
> -- Looking for cheev_
> -- Looking for cheev_ - found
> -- A library with LAPACK API found.
> -- Found OpenBlas
> -- Found Lapack
> -- CLP not found.
> -- BLAS_INCLUDE_DIR=/usr/include/openblas
> -- A library with BLAS API found.
> -- A library with LAPACK API found.
> -- CLP NOT found
> -- md5sum of freegult /usr/include/GL/freeglut_std.h is:
> 791a2febd8584ec530cdd7676191b6d5
> -- freegult version is 2.8.1
> Yade will be installed to /media/scholtes/sdb/yade/sources/trunk/install
> -- Suffix is set to -2019-11-05.git-35899c7
> -- LIBRARY_OUTPUT_PATH is set to lib/x86_64-linux-gnu
> -- runtimePREFIX is set to /media/scholtes/sdb/yade/sources/trunk/install
> -- Found gts: /usr/lib/python2.7/dist-packages/gts
> -- Use system gts version
> -- VTK version >5 and <8 is found
> -- ===========================================================
> -- Yade configured with following features: BoostLog Odeint VTK OpenMP GTS
> GUI-Qt5 CGAL PFVFLOW PFVFLOW LINSOLV MPI TWOPHASEFLOW FEMLIKE GL2PS LBMFLOW
> THERMAL PotentialParticles
> -- Disabled features: CHOLMOD_GPU SPH DEFORM LIQMIGRATION MASK_ARBITRARY
> PROFILING PotentialBlocks
> -- Using MAX_LOG_LEVEL=5, ENABLE_LOGGER=ON
> -- Optimized build
> -- ===========================================================
> -- Configuring done
> -- Generating done
> -- Build files have been written to:
> /media/scholtes/sdb/yade/sources/trunk/build
>
> Any suggestion?
>
> Thanks
>
> Luc
>
> You received this question notification because your team yade-users is
> an answer contact for Yade.
>
> _______________________________________________
> Mailing list: https://launchpad.net/~yade-users
> Post to : <email address hidden>
> Unsubscribe : https://launchpad.net/~yade-users
> More help : https://help.launchpad.net/ListHelp
>

Robert Caulk (rcaulk) said : #2

Hey Luc,

I am not sure about it, the pipeline on gitlab for 16.04 seems to pass [1]. Could be worth following the docker exactly [2]. Have you tried compiling with -DENABLE_MPI=OFF?
Cheers,

Robert

[1]https://gitlab.com/yade-dev/trunk/-/jobs/344010835
[2]https://gitlab.com/yade-dev/docker-yade/blob/ubuntu16-py3/Dockerfile

Robert Caulk (rcaulk) said : #3

Ah deepak is right. Copying and pasting the apt-get install from the docker link should install all your python3 dependecies.

Luc Scholtès (luc) said : #4

Thank you guys

I had an uncomplete python3 installed alongside python2...

I reinstalled everything and I can now compile and run YADE.

Nonetheless, I have this at cmake:

-- Could NOT find gts (missing: PY_gts)
-- Use embedded version of gts. Please, consider installing the corresponding package

while I got this before:

-- Found GTS

probably not a big deal... until it becomes one :)