Problem with installing yade from source

Do you install 1.07 or current git-version?

Anton

2014-05-09 18:06 GMT+02:00 Jiadun Liu <email address hidden>:
> New question #248457 on Yade:
> https://answers.launchpad.net/yade/+question/248457
>
> Dear All,
>
> I attempted to install yade from source.
>
> The following results were got.
>
> [ 4%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/moc_OpenGLManager.cxx.o
> Linking CXX shared library lib/x86_64-linux-gnu/_GLViewer.so
> [ 5%] Built target _GLViewer
> Scanning dependencies of target yade
> [ 5%] Building CXX object CMakeFiles/yade.dir/core/Cell.cpp.o
>
> [ 38%] Building CXX object CMakeFiles/yade.dir/pkg/dem/VTKRecorder.cpp.o
> In file included from /usr/include/c++/4.8/backward/strstream:51:0,
> from /usr/include/vtk-5.8/vtkIOStream.h:112,
> from /usr/include/vtk-5.8/vtkSystemIncludes.h:40,
> from /usr/include/vtk-5.8/vtkIndent.h:24,
> from /usr/include/vtk-5.8/vtkObjectBase.h:43,
> from /usr/include/vtk-5.8/vtkObject.h:41,
> from /usr/include/vtk-5.8/vtkCell.h:40,
> from /usr/include/vtk-5.8/vtkQuad.h:25,
> from /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/VTKRecorder.hpp:3,
> from /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/VTKRecorder.cpp:3:
> /usr/include/c++/4.8/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
> [ 38%] Building CXX object CMakeFiles/yade.dir/pkg/dem/LudingPM.cpp.o
>
> [ 51%] Building CXX object CMakeFiles/yade.dir/pkg/dem/FlowEngine.cpp.o
> In file included from /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/FlowEngine.cpp:28:0:
> /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/FlowEngine.hpp: In member function ‘void FlowEngine::cholmodStats()’:
> /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/FlowEngine.hpp:199:91: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
> cerr << cholmod_print_common("PFV Cholmod factorization",&(solver->eSolver.cholmod()))<<endl;
> ^
> [ 52%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp.o
>
> [ 61%] Building CXX object CMakeFiles/yade.dir/pkg/dem/STLImporter.cpp.o
> In file included from /home/jiadun/myYade/trunk/trunk-1.07.0/pkg/dem/STLImporter.cpp:10:0:
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp: In member function ‘bool STLReader::open_ascii(const char*, OutV, OutE, OutF, OutN) [with OutV = std::back_insert_iterator<std::vector<double> >; OutE = std::back_insert_iterator<std::vector<int> >; OutF = std::back_insert_iterator<std::vector<int> >; OutN = std::back_insert_iterator<std::vector<double> >]’:
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:120:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
> fscanf(fp, "%*s %*s %f %f %f\n", &n[0], &n[1], &n[2]);
> ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:121:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
> fscanf(fp, "%*s %*s");
> ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:122:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
> fscanf(fp, "%*s %f %f %f\n", &v[0][0], &v[0][1], &v[0][2]);
> ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:123:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
> fscanf(fp, "%*s %f %f %f\n", &v[1][0], &v[1][1], &v[1][2]);
> ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:124:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
> fscanf(fp, "%*s %f %f %f\n", &v[2][0], &v[2][1], &v[2][2]);
> ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:125:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
> fscanf(fp, "%*s"); // end loop
> ^
> /home/jiadun/myYade/build/yade/lib/import/STLReader.hpp:126:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
> fscanf(fp, "%*s"); // end facet
> ^
> [ 62%] Building CXX object CMakeFiles/yade.dir/pkg/common/PyRunner.cpp.o
>
> [ 95%] Building CXX object CMakeFiles/yade.dir/lib/triangulation/TriaxialState.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/libyade.so
> [ 95%] Built target yade
> Scanning dependencies of target boot
> [ 95%] Building CXX object CMakeFiles/boot.dir/core/main/pyboot.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/boot.so
> [ 95%] Built target boot
> Scanning dependencies of target WeightedAverage2d
> [ 95%] Building CXX object py/CMakeFiles/WeightedAverage2d.dir/WeightedAverage2d.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/WeightedAverage2d.so
> [ 95%] Built target WeightedAverage2d
> Scanning dependencies of target _customConverters
> [ 96%] Building CXX object py/CMakeFiles/_customConverters.dir/wrapper/customConverters.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/_customConverters.so
> [ 96%] Built target _customConverters
> Scanning dependencies of target _packObb
> [ 96%] Building CXX object py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/_packObb.so
> [ 96%] Built target _packObb
> Scanning dependencies of target _packPredicates
> [ 97%] Building CXX object py/CMakeFiles/_packPredicates.dir/pack/_packPredicates.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/_packPredicates.so
> [ 97%] Built target _packPredicates
> Scanning dependencies of target _packSpheres
> [ 98%] Building CXX object py/CMakeFiles/_packSpheres.dir/pack/_packSpheres.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/_packSpheres.so
> [ 98%] Built target _packSpheres
> Scanning dependencies of target _polyhedra_utils
> [ 98%] Building CXX object py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o
> In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
> from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
> from /home/jiadun/myYade/trunk/trunk-1.07.0/py/_polyhedra_utils.cpp:17:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
> #warning "Using deprecated NumPy API, disable it by " \
> ^
> Linking CXX shared library lib/x86_64-linux-gnu/_polyhedra_utils.so
> [ 98%] Built target _polyhedra_utils
> Scanning dependencies of target _utils
> [ 99%] Building CXX object py/CMakeFiles/_utils.dir/_utils.cpp.o
> In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
> from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
> from /home/jiadun/myYade/trunk/trunk-1.07.0/py/_utils.cpp:18:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
> #warning "Using deprecated NumPy API, disable it by " \
> ^
> Linking CXX shared library lib/x86_64-linux-gnu/_utils.so
> [ 99%] Built target _utils
> Scanning dependencies of target wrapper
> [100%] Building CXX object py/CMakeFiles/wrapper.dir/wrapper/yadeWrapper.cpp.o
> Linking CXX shared library lib/x86_64-linux-gnu/wrapper.so
> [100%] Built target wrapper
>
> make doc
> Scanning dependencies of target doc
> Welcome to Yade 1.07.0
> TCP python prompt on localhost:9000, auth cookie `sdacyk'
> XMLRPC info provider on http://localhost:21000
> Running script yadeSphinx.py
> Running Sphinx v1.2.2
>
> Exception occurred:
> File "/home/jiadun/myYade/build/doc/sphinx/ipython_directive.py", line 83, in <module>
> from IPython.Shell import MatplotlibShell
> ImportError: No module named Shell
> The full traceback has been saved in /tmp/sphinx-err-6ZrDDH.log, if you want to report the issue to the developers.
> Please also report this if it was a user error, so that a better error message can be provided next time.
> A bug report can be filed in the tracker at <https://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks!
> Traceback (most recent call last):
> File "/home/jiadun/myYade/trunk/install/bin/yade-1.07.0", line 178, in runScript
> execfile(script,globals())
> File "yadeSphinx.py", line 222, in <module>
> makeBaseClassesClickable((outDir+'/html/yade.wrapper.html'),writer)
> File "yadeSphinx.py", line 154, in makeBaseClassesClickable
> for l in open(f):
> IOError: [Errno 2] No such file or directory: '_build/html/yade.wrapper.html'
> Traceback (most recent call last):
> File "/home/jiadun/myYade/trunk/install/bin/yade-1.07.0", line 273, in <module>
> userSession(qt4=True,qapp=qapp)
> File "/home/jiadun/myYade/trunk/install/bin/yade-1.07.0", line 208, in userSession
> from IPython.Shell import IPShellEmbed
> ImportError: No module named Shell
> make[3]: *** [doc] Error 1
> make[2]: *** [CMakeFiles/doc.dir/all] Error 2
> make[1]: *** [CMakeFiles/doc.dir/rule] Error 2
> make: *** [doc] Error 2
>
> jiadun@jiadun-Lenovo-IdeaPad-Z500:~/myYade/trunk/install/bin$ ./yade-1.07.0
> Welcome to Yade 1.07.0
> TCP python prompt on localhost:9000, auth cookie `cysaek'
> XMLRPC info provider on http://localhost:21000
> Traceback (most recent call last):
> File "./yade-1.07.0", line 273, in <module>
> userSession(qt4=True,qapp=qapp)
> File "./yade-1.07.0", line 208, in userSession
> from IPython.Shell import IPShellEmbed
> ImportError: No module named Shell
>
> Best regards,
> Jiadun
>
> --
> You received this question notification because you are a member of
> yade-users, which is an answer contact for Yade.
>
> _______________________________________________
> Mailing list: https://launchpad.net/~yade-users
> Post to : <email address hidden>
> Unsubscribe : https://launchpad.net/~yade-users
> More help : https://help.launchpad.net/ListHelp

Hi Anton,

I installed 1.07 rather than git-versions.

Best,
Jiadun

Hi Anton,

After reading the thread https://answers.launchpad.net/yade/+question/228440, I tried git-version by using git clone https://github.com/yade/trunk.git.

I got the following.

-- ===========================================================
-- Yade configured with following features: Eigen3 Odeint VTK OpenMP GTS GUI CGAL PFVflow LinSolv GL2PS
-- Disabled features: SPH LIQMIGRATION LBMFLOW
-- Optimized build
-- ===========================================================
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jiadun/myYade/build-dir
jiadun@jiadun-Lenovo-IdeaPad-Z500:~/myYade/build-dir$ make
Linking CXX shared library lib/x86_64-linux-gnu/_GLViewer.so
[ 5%] Built target _GLViewer
[ 5%] Building CXX object CMakeFiles/yade.dir/pkg/dem/DomainLimiter.cpp.o
[ 6%] Building CXX object CMakeFiles/yade.dir/pkg/dem/NormalInelasticityPhys.cpp.o
[ 6%] Building CXX object CMakeFiles/yade.dir/pkg/dem/InelastCohFrictMat.cpp.o
[ 7%] Building CXX object CMakeFiles/yade.dir/pkg/dem/BubbleMat.cpp.o
[ 7%] Building CXX object CMakeFiles/yade.dir/pkg/dem/ForceTorqueRecorder.cpp.o
[ 8%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.cpp.o
[ 8%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Tetra.cpp.o
[ 9%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Polyhedra_splitter.cpp.o
[ 10%] Building CXX object CMakeFiles/yade.dir/pkg/dem/RungeKuttaCashKarp54Integrator.cpp.o
[ 10%] Building CXX object CMakeFiles/yade.dir/pkg/dem/CapillaryTriaxialTest.cpp.o
[ 11%] Building CXX object CMakeFiles/yade.dir/pkg/dem/InelastCohFrictPhys.cpp.o
[ 11%] Building CXX object CMakeFiles/yade.dir/pkg/dem/FrictPhys.cpp.o
[ 12%] Building CXX object CMakeFiles/yade.dir/pkg/dem/PeriIsoCompressor.cpp.o
[ 12%] Building CXX object CMakeFiles/yade.dir/pkg/dem/KinemCNDEngine.cpp.o
[ 13%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Shop_02.cpp.o
[ 13%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.cpp.o
[ 14%] Building CXX object CMakeFiles/yade.dir/pkg/dem/CohFrictMat.cpp.o
[ 14%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Disp2DPropLoadEngine.cpp.o
[ 15%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ip2_FrictMat_FrictMat_CapillaryPhys.cpp.o
[ 16%] Building CXX object CMakeFiles/yade.dir/pkg/dem/VTKRecorder.cpp.o
In file included from /usr/include/c++/4.8/backward/strstream:51:0,
                 from /usr/include/vtk-5.8/vtkIOStream.h:112,
                 from /usr/include/vtk-5.8/vtkSystemIncludes.h:40,
                 from /usr/include/vtk-5.8/vtkIndent.h:24,
                 from /usr/include/vtk-5.8/vtkObjectBase.h:43,
                 from /usr/include/vtk-5.8/vtkObject.h:41,
                 from /usr/include/vtk-5.8/vtkCell.h:40,
                 from /usr/include/vtk-5.8/vtkQuad.h:25,
                 from /home/jiadun/myYade/trunk/pkg/dem/VTKRecorder.hpp:3,
                 from /home/jiadun/myYade/trunk/pkg/dem/VTKRecorder.cpp:3:
/usr/include/c++/4.8/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
 #warning \
  ^
[ 16%] Building CXX object CMakeFiles/yade.dir/pkg/dem/LudingPM.cpp.o
[ 17%] Building CXX object CMakeFiles/yade.dir/pkg/dem/KinemCTDEngine.cpp.o
[ 17%] Building CXX object CMakeFiles/yade.dir/pkg/dem/UnbalancedForceCallbacks.cpp.o

[ 30%] Building CXX object CMakeFiles/yade.dir/pkg/dem/TesselationWrapper.cpp.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
                 from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /home/jiadun/myYade/build-dir/yade/lib/pyutil/numpy_boost.hpp:40,
                 from /home/jiadun/myYade/build-dir/yade/lib/pyutil/numpy.hpp:3,
                 from /home/jiadun/myYade/trunk/pkg/dem/TesselationWrapper.cpp:11:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
[ 31%] Building CXX object CMakeFiles/yade.dir/pkg/dem/SampleCapillaryPressureEngine.cpp.o
[ 31%] Building CXX object CMakeFiles/yade.dir/pkg/dem/ScGeom.cpp.o

[ 38%] Building CXX object CMakeFiles/yade.dir/pkg/dem/TriaxialCompressionEngine.cpp.o
[ 38%] Building CXX object CMakeFiles/yade.dir/pkg/dem/STLImporter.cpp.o
In file included from /home/jiadun/myYade/trunk/pkg/dem/STLImporter.cpp:10:0:
/home/jiadun/myYade/build-dir/yade/lib/import/STLReader.hpp: In member function ‘bool STLReader::open_ascii(const char*, OutV, OutE, OutF, OutN) [with OutV = std::back_insert_iterator<std::vector<double> >; OutE = std::back_insert_iterator<std::vector<int> >; OutF = std::back_insert_iterator<std::vector<int> >; OutN = std::back_insert_iterator<std::vector<double> >]’:
/home/jiadun/myYade/build-dir/yade/lib/import/STLReader.hpp:120:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s %*s %f %f %f\n", &n[0], &n[1], &n[2]);
  ^
/home/jiadun/myYade/build-dir/yade/lib/import/STLReader.hpp:121:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s %*s");
  ^
/home/jiadun/myYade/build-dir/yade/lib/import/STLReader.hpp:122:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s %f %f %f\n", &v[0][0], &v[0][1], &v[0][2]);
  ^
/home/jiadun/myYade/build-dir/yade/lib/import/STLReader.hpp:123:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s %f %f %f\n", &v[1][0], &v[1][1], &v[1][2]);
  ^
/home/jiadun/myYade/build-dir/yade/lib/import/STLReader.hpp:124:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s %f %f %f\n", &v[2][0], &v[2][1], &v[2][2]);
  ^
/home/jiadun/myYade/build-dir/yade/lib/import/STLReader.hpp:125:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s"); // end loop
  ^
/home/jiadun/myYade/build-dir/yade/lib/import/STLReader.hpp:126:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s"); // end facet
  ^
[ 39%] Building CXX object CMakeFiles/yade.dir/pkg/lbm/LBMlink.cpp.o
[ 39%] Building CXX object CMakeFiles/yade.dir/pkg/lbm/LBMnode.cpp.o

[ 72%] Building CXX object CMakeFiles/yade.dir/lib/triangulation/TriaxialState.cpp.o
Linking CXX shared library lib/x86_64-linux-gnu/libyade.so
[ 96%] Built target yade
Scanning dependencies of target boot
[ 97%] Building CXX object CMakeFiles/boot.dir/core/main/pyboot.cpp.o
Linking CXX shared library lib/x86_64-linux-gnu/boot.so
[ 97%] Built target boot
Scanning dependencies of target WeightedAverage2d
[ 97%] Building CXX object py/CMakeFiles/WeightedAverage2d.dir/WeightedAverage2d.cpp.o
Linking CXX shared library lib/x86_64-linux-gnu/WeightedAverage2d.so
[ 97%] Built target WeightedAverage2d
Scanning dependencies of target _customConverters
[ 97%] Building CXX object py/CMakeFiles/_customConverters.dir/wrapper/customConverters.cpp.o
Linking CXX shared library lib/x86_64-linux-gnu/_customConverters.so
[ 97%] Built target _customConverters
Scanning dependencies of target _packObb
[ 98%] Building CXX object py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o
Linking CXX shared library lib/x86_64-linux-gnu/_packObb.so
[ 98%] Built target _packObb
Scanning dependencies of target _packPredicates
[ 99%] Building CXX object py/CMakeFiles/_packPredicates.dir/pack/_packPredicates.cpp.o
Linking CXX shared library lib/x86_64-linux-gnu/_packPredicates.so
[ 99%] Built target _packPredicates
Scanning dependencies of target _packSpheres
[ 99%] Building CXX object py/CMakeFiles/_packSpheres.dir/pack/_packSpheres.cpp.o
Linking CXX shared library lib/x86_64-linux-gnu/_packSpheres.so
[ 99%] Built target _packSpheres
Scanning dependencies of target _polyhedra_utils
[100%] Building CXX object py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
                 from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /home/jiadun/myYade/trunk/py/_polyhedra_utils.cpp:17:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
Linking CXX shared library lib/x86_64-linux-gnu/_polyhedra_utils.so
[100%] Built target _polyhedra_utils
Scanning dependencies of target _utils
[100%] Building CXX object py/CMakeFiles/_utils.dir/_utils.cpp.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
                 from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /home/jiadun/myYade/trunk/py/_utils.cpp:18:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
Linking CXX shared library lib/x86_64-linux-gnu/_utils.so
[100%] Built target _utils
Scanning dependencies of target wrapper
[100%] Building CXX object py/CMakeFiles/wrapper.dir/wrapper/yadeWrapper.cpp.o
Linking CXX shared library lib/x86_64-linux-gnu/wrapper.so

copying extra files... done
writing mimetype file...
writing META-INF/container.xml file...
writing content.opf file...
WARNING: unknown mimetype for _static/yade-favicon.ico, ignoring
WARNING: unknown mimetype for _static/README, ignoring
WARNING: unknown mimetype for _images/graphviz-7763e38875a4cfed91b732553e0bcb8b34557b09.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-e0e709463d54b96a01f9a17bdad0b0e429e1328f.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-26bb3004012b4363ba5e47396a6fb6550e41955c.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-fe2ffcf9afb02be8f16196eaf066e58ee4cbe255.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-f6fce522d4a5af42b53e764b973f456cfa5b1c33.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-ba4c41df314b8aaa55b6b02d168f285457e76a30.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-42c00f878613eea4742258e3452ce6b7319edd81.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-3aca80944cde2986ea886b976d787c38aa17457a.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-dfad595826fc5d9b53d6aaabdd0208b42f037e24.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-669e3b48b72f02d1f3e758ea5888de0955e246ab.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-f8d96a9540fdd8db571280ff9531fe0d2dc5fc3d.png.map, ignoring
WARNING: unknown mimetype for _images/cell-shear-aabb.pdf, ignoring
WARNING: unknown mimetype for _images/graphviz-5d54a846fe0904bbc5927f38276fdae17109915e.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-e961c6b02e6849bd943b22e311ea00580163ebe1.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-ae9272e2fb0027e4ea1fac9444e97a9aa12c790a.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-78695a3053e75909ba014cd48437053edf8dd1a0.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-7a3919853b47084faf77ae8e52275aad743879c9.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-0e53076e76d319361ebb924232e7e91e072a4ad7.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-e7a650f4d02e6919ec8e2eadd4038fd2f1d57569.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-c1b8e11b4ef40761efe771bb966bf1ec27ed93a2.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-5fa8188396c76b59be147d4b8fd4cb1b96c41942.png.map, ignoring
WARNING: unknown mimetype for _images/graphviz-cffb6a44905d0e65bce4c8a832c23c374e7e8c58.png.map, ignoring
writing toc.ncx file...
writing Yade.epub file...
build succeeded, 29 warnings.
/bin/sh: 1: xelatex: not found
make[3]: *** [doc] Error 127
make[2]: *** [CMakeFiles/doc.dir/all] Error 2
make[1]: *** [CMakeFiles/doc.dir/rule] Error 2
make: *** [doc] Error 2

Best regards,
Jiadun

> xelatex: not found
Sorry, did you read that?

Anton

Hi Anton,

Last time I just browsed that thread. However, this time I did as it was in that thread.

What I got is as following.

New 2014-5-11

jiadun@jiadun-Lenovo-IdeaPad-Z500:~/myYade/YadeCodes/build$ cmake -DINSTALL_PREFIX=/home/jiadun/ ../trunk
-- The C compiler identification is GNU 4.8.2
-- The CXX compiler identification is GNU 4.8.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found version "2.7.6")
-- Found PythonInterp: /usr/bin/python (found version "2.7.6")
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found
-- Found Qt4: /usr/bin/qmake (found version "4.8.6")
-- The imported target "vtkQtChart" references the file
   "/usr/lib/libvtkQtChart.so.5.8.0"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "QVTK" references the file
   "/usr/lib/libQVTK.so.5.8.0"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- Found PkgConfig: /usr/bin/pkg-config (found version "0.26")
-- Version is set to 2014-05-08.git-998a28d
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so
-- GTS using gts-config /usr/bin/gts-config
-- Using GTS from /usr
-- Found GL2PS: /usr/lib/libgl2ps.so
-- Found CGAL: /usr/include/CGAL, /usr/lib/libCGAL.so
-- Found NumPy: version "1.8.1" /usr/lib/python2.7/dist-packages/numpy/core/include
-- Found Loki: /usr/include
-- GCC Version >= 4.8. Adding -ftrack-macro-expansion=0 and -save-temps
-- Boost version: 1.54.0
-- Found the following Boost libraries:
-- python
-- thread
-- filesystem
-- iostreams
-- regex
-- serialization
-- system
-- Boost_VERSION: 105400
-- Boost_LIB_VERSION: 1_54
-- Boost_INCLUDE_DIRS: /usr/include
-- Boost_LIBRARIES: /usr/lib/x86_64-linux-gnu/libboost_python.so/usr/lib/x86_64-linux-gnu/libboost_thread.so/usr/lib/x86_64-linux-gnu/libboost_filesystem.so/usr/lib/x86_64-linux-gnu/libboost_iostreams.so/usr/lib/x86_64-linux-gnu/libboost_regex.so/usr/lib/x86_64-linux-gnu/libboost_serialization.so/usr/lib/x86_64-linux-gnu/libboost_system.so/usr/lib/x86_64-linux-gnu/libpthread.so
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
-- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so
-- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so - found
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8")
-- Found Eigen3
-- Found VTK
-- Found OpenMP
-- GTS using gts-config /usr/bin/gts-config
-- Using GTS from /usr
-- checking for one of the modules 'glib-2.0'
-- Found GLib2: glib-2.0 /usr/include/glib-2.0;/usr/lib/x86_64-linux-gnu/glib-2.0/include
-- Looking for include file glib/gregex.h
-- Looking for include file glib/gregex.h - not found
-- Found GTS
-- Found Qt4: /usr/bin/qmake (found version "4.8.6")
-- Found GLUT: /usr/lib/x86_64-linux-gnu/libglut.so
-- Found QGLViewer: /usr/lib/x86_64-linux-gnu/libQGLViewer.so
-- Found GUI-LIBS
-- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libgmpxx.so
-- Found GMP: /usr/include/x86_64-linux-gnu
-- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libgmpxx.so
-- Found CGAL
-- Found Cholmod: /usr/lib/libcholmod.so
-- Found OpenBlas: /usr/lib/libopenblas.so
-- Found Metis: /usr/include/metis
-- Found Cholmod
-- Found OpenBlas
-- Found Metis
-- Found GL2PS
Yade will be installed to /home/jiadun
-- Suffix is set to -2014-05-08.git-998a28d
-- LIBRARY_OUTPUT_PATH is set to lib/x86_64-linux-gnu
-- runtimePREFIX is set to /home/jiadun
-- Found gts: /usr/lib/python2.7/dist-packages/gts
-- Use system gts version
-- Found minieigen: /usr/lib/python2.7/dist-packages/minieigen.so
-- Use system minieigen version
-- Found Tkinter: /usr/lib/python2.7/lib-tk/Tkinter.pyc
-- ===========================================================
-- Yade configured with following features: Eigen3 Odeint VTK OpenMP GTS GUI CGAL PFVflow LinSolv GL2PS
-- Disabled features: SPH LIQMIGRATION LBMFLOW
-- Optimized build
-- ===========================================================
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jiadun/myYade/YadeCodes/build
jiadun@jiadun-Lenovo-IdeaPad-Z500:~/myYade/YadeCodes/build$ make
[ 0%] Generating qt4/moc_OpenGLManager.cxx
[ 1%] Generating qt4/moc_GLViewer.cxx
Scanning dependencies of target _GLViewer
[ 2%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/GLViewer.cpp.o
[ 2%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/_GLViewer.cpp.o
[ 3%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/OpenGLManager.cpp.o
[ 3%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/GLViewerDisplay.cpp.o
[ 4%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/GLViewerMouse.cpp.o
[ 4%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/moc_GLViewer.cxx.o
[ 5%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt4/moc_OpenGLManager.cxx.o
Linking CXX shared library lib/x86_64-linux-gnu/_GLViewer.so
[ 5%] Built target _GLViewer
Scanning dependencies of target yade
[ 6%] Building CXX object CMakeFiles/yade.dir/core/Cell.cpp.o
[ 6%] Building CXX object CMakeFiles/yade.dir/core/State.cpp.o
[ 7%] Building CXX object CMakeFiles/yade.dir/core/ThreadRunner.cpp.o
[ 7%] Building CXX object CMakeFiles/yade.dir/core/Dispatcher.cpp.o
[ 8%] Building CXX object CMakeFiles/yade.dir/core/EnergyTracker.cpp.o
[ 9%] Building CXX object CMakeFiles/yade.dir/core/PartialEngine.cpp.o
[ 9%] Building CXX object CMakeFiles/yade.dir/core/InteractionContainer.cpp.o
[ 10%] Building CXX object CMakeFiles/yade.dir/core/Engine.cpp.o
[ 10%] Building CXX object CMakeFiles/yade.dir/core/TimeStepper.cpp.o
[ 11%] Building CXX object CMakeFiles/yade.dir/core/Interaction.cpp.o
[ 11%] Building CXX object CMakeFiles/yade.dir/core/FileGenerator.cpp.o
[ 12%] Building CXX object CMakeFiles/yade.dir/core/Clump.cpp.o
[ 12%] Building CXX object CMakeFiles/yade.dir/core/Body.cpp.o
[ 13%] Building CXX object CMakeFiles/yade.dir/core/SimulationFlow.cpp.o
[ 13%] Building CXX object CMakeFiles/yade.dir/core/Scene.cpp.o
[ 14%] Building CXX object CMakeFiles/yade.dir/core/Bound.cpp.o
[ 15%] Building CXX object CMakeFiles/yade.dir/core/FrontEnd.cpp.o
[ 15%] Building CXX object CMakeFiles/yade.dir/core/BodyContainer.cpp.o
[ 16%] Building CXX object CMakeFiles/yade.dir/core/Omega.cpp.o
[ 16%] Building CXX object CMakeFiles/yade.dir/core/Shape.cpp.o
[ 17%] Building CXX object CMakeFiles/yade.dir/core/ThreadWorker.cpp.o
[ 17%] Building CXX object CMakeFiles/yade.dir/core/Material.cpp.o
[ 18%] Building CXX object CMakeFiles/yade.dir/core/corePlugins.cpp.o
[ 18%] Building CXX object CMakeFiles/yade.dir/pkg/pfv/SoluteFlowEngine.cpp.o
[ 19%] Building CXX object CMakeFiles/yade.dir/pkg/pfv/PeriodicFlowEngine.cpp.o
[ 19%] Building CXX object CMakeFiles/yade.dir/pkg/pfv/DFNFlow.cpp.o
[ 20%] Building CXX object CMakeFiles/yade.dir/pkg/pfv/FlowEngine.cpp.o
[ 21%] Building CXX object CMakeFiles/yade.dir/pkg/pfv/DummyFlowEngine.cpp.o
[ 21%] Building CXX object CMakeFiles/yade.dir/pkg/dem/ElasticContactLaw.cpp.o
[ 22%] Building CXX object CMakeFiles/yade.dir/pkg/dem/NormalInelasticMat.cpp.o
[ 22%] Building CXX object CMakeFiles/yade.dir/pkg/dem/KinemSimpleShearBox.cpp.o
[ 23%] Building CXX object CMakeFiles/yade.dir/pkg/dem/TriaxialStressController.cpp.o
[ 23%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Polyhedra_support.cpp.o
[ 24%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Shop_01.cpp.o
[ 24%] Building CXX object CMakeFiles/yade.dir/pkg/dem/ViscoelasticCapillarPM.cpp.o
[ 25%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.cpp.o
[ 25%] Building CXX object CMakeFiles/yade.dir/pkg/dem/CohesiveFrictionalContactLaw.cpp.o
[ 26%] Building CXX object CMakeFiles/yade.dir/pkg/dem/FlatGridCollider.cpp.o
[ 26%] Building CXX object CMakeFiles/yade.dir/pkg/dem/CapillaryStressRecorder.cpp.o
[ 27%] Building CXX object CMakeFiles/yade.dir/pkg/dem/DemXDofGeom.cpp.o
[ 28%] Building CXX object CMakeFiles/yade.dir/pkg/dem/SpheresFactory.cpp.o
[ 28%] Building CXX object CMakeFiles/yade.dir/pkg/dem/MicroMacroAnalyser.cpp.o
[ 29%] Building CXX object CMakeFiles/yade.dir/pkg/dem/SimpleShear.cpp.o
[ 29%] Building CXX object CMakeFiles/yade.dir/pkg/dem/DomainLimiter.cpp.o
[ 30%] Building CXX object CMakeFiles/yade.dir/pkg/dem/NormalInelasticityPhys.cpp.o
[ 30%] Building CXX object CMakeFiles/yade.dir/pkg/dem/InelastCohFrictMat.cpp.o
[ 31%] Building CXX object CMakeFiles/yade.dir/pkg/dem/BubbleMat.cpp.o
[ 31%] Building CXX object CMakeFiles/yade.dir/pkg/dem/ForceTorqueRecorder.cpp.o
[ 32%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.cpp.o
[ 32%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Tetra.cpp.o
[ 33%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Polyhedra_splitter.cpp.o
[ 34%] Building CXX object CMakeFiles/yade.dir/pkg/dem/RungeKuttaCashKarp54Integrator.cpp.o
[ 34%] Building CXX object CMakeFiles/yade.dir/pkg/dem/CapillaryTriaxialTest.cpp.o
[ 35%] Building CXX object CMakeFiles/yade.dir/pkg/dem/InelastCohFrictPhys.cpp.o
[ 35%] Building CXX object CMakeFiles/yade.dir/pkg/dem/FrictPhys.cpp.o
[ 36%] Building CXX object CMakeFiles/yade.dir/pkg/dem/PeriIsoCompressor.cpp.o
[ 36%] Building CXX object CMakeFiles/yade.dir/pkg/dem/KinemCNDEngine.cpp.o
[ 37%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Shop_02.cpp.o
[ 37%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.cpp.o
[ 38%] Building CXX object CMakeFiles/yade.dir/pkg/dem/CohFrictMat.cpp.o
[ 38%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Disp2DPropLoadEngine.cpp.o
[ 39%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ip2_FrictMat_FrictMat_CapillaryPhys.cpp.o
[ 40%] Building CXX object CMakeFiles/yade.dir/pkg/dem/VTKRecorder.cpp.o
In file included from /usr/include/c++/4.8/backward/strstream:51:0,
                 from /usr/include/vtk-5.8/vtkIOStream.h:112,
                 from /usr/include/vtk-5.8/vtkSystemIncludes.h:40,
                 from /usr/include/vtk-5.8/vtkIndent.h:24,
                 from /usr/include/vtk-5.8/vtkObjectBase.h:43,
                 from /usr/include/vtk-5.8/vtkObject.h:41,
                 from /usr/include/vtk-5.8/vtkCell.h:40,
                 from /usr/include/vtk-5.8/vtkQuad.h:25,
                 from /home/jiadun/myYade/YadeCodes/trunk/pkg/dem/VTKRecorder.hpp:3,
                 from /home/jiadun/myYade/YadeCodes/trunk/pkg/dem/VTKRecorder.cpp:3:
/usr/include/c++/4.8/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
 #warning \
  ^
[ 40%] Building CXX object CMakeFiles/yade.dir/pkg/dem/LudingPM.cpp.o
[ 41%] Building CXX object CMakeFiles/yade.dir/pkg/dem/KinemCTDEngine.cpp.o
[ 41%] Building CXX object CMakeFiles/yade.dir/pkg/dem/UnbalancedForceCallbacks.cpp.o
[ 42%] Building CXX object CMakeFiles/yade.dir/pkg/dem/KinemCNSEngine.cpp.o
[ 42%] Building CXX object CMakeFiles/yade.dir/pkg/dem/ThreeDTriaxialEngine.cpp.o
[ 43%] Building CXX object CMakeFiles/yade.dir/pkg/dem/KinemCNLEngine.cpp.o
[ 43%] Building CXX object CMakeFiles/yade.dir/pkg/dem/NormalInelasticityLaw.cpp.o
[ 44%] Building CXX object CMakeFiles/yade.dir/pkg/dem/CapillaryPhys.cpp.o
[ 44%] Building CXX object CMakeFiles/yade.dir/pkg/dem/SnapshotEngine.cpp.o
[ 45%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ig2_Facet_Sphere_ScGeom.cpp.o
[ 46%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Integrator.cpp.o
[ 46%] Building CXX object CMakeFiles/yade.dir/pkg/dem/FacetTopologyAnalyzer.cpp.o
[ 47%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ig2_Sphere_Sphere_ScGeom.cpp.o
[ 47%] Building CXX object CMakeFiles/yade.dir/pkg/dem/L3Geom.cpp.o
[ 48%] Building CXX object CMakeFiles/yade.dir/pkg/dem/TriaxialTest.cpp.o
[ 48%] Building CXX object CMakeFiles/yade.dir/pkg/dem/ConcretePM.cpp.o
[ 49%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.cpp.o
[ 49%] Building CXX object CMakeFiles/yade.dir/pkg/dem/CohesiveTriaxialTest.cpp.o
[ 50%] Building CXX object CMakeFiles/yade.dir/pkg/dem/NewtonIntegrator.cpp.o
[ 50%] Building CXX object CMakeFiles/yade.dir/pkg/dem/SpherePack.cpp.o
[ 51%] Building CXX object CMakeFiles/yade.dir/pkg/dem/GeneralIntegratorInsertionSortCollider.cpp.o
[ 51%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ip2_2xNormalInelasticMat_NormalInelasticityPhys.cpp.o
[ 52%] Building CXX object CMakeFiles/yade.dir/pkg/dem/CohFrictPhys.cpp.o
[ 53%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Law2_ScGeom6D_InelastCohFrictPhys_CohesionMoment.cpp.o
[ 53%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp.o
[ 54%] Building CXX object CMakeFiles/yade.dir/pkg/dem/WirePM.cpp.o
[ 54%] Building CXX object CMakeFiles/yade.dir/pkg/dem/TesselationWrapper.cpp.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
                 from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /home/jiadun/myYade/YadeCodes/build/yade/lib/pyutil/numpy_boost.hpp:40,
                 from /home/jiadun/myYade/YadeCodes/build/yade/lib/pyutil/numpy.hpp:3,
                 from /home/jiadun/myYade/YadeCodes/trunk/pkg/dem/TesselationWrapper.cpp:11:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
[ 55%] Building CXX object CMakeFiles/yade.dir/pkg/dem/SampleCapillaryPressureEngine.cpp.o
[ 55%] Building CXX object CMakeFiles/yade.dir/pkg/dem/ScGeom.cpp.o
[ 56%] Building CXX object CMakeFiles/yade.dir/pkg/dem/GlobalStiffnessTimeStepper.cpp.o
[ 56%] Building CXX object CMakeFiles/yade.dir/pkg/dem/UniaxialStrainer.cpp.o
[ 57%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Polyhedra_Ig2.cpp.o
[ 57%] Building CXX object CMakeFiles/yade.dir/pkg/dem/ViscoelasticPM.cpp.o
[ 58%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ip2_ElastMat.cpp.o
[ 59%] Building CXX object CMakeFiles/yade.dir/pkg/dem/HertzMindlin.cpp.o
[ 59%] Building CXX object CMakeFiles/yade.dir/pkg/dem/TriaxialStateRecorder.cpp.o
[ 60%] Building CXX object CMakeFiles/yade.dir/pkg/dem/FrictViscoPM.cpp.o
[ 60%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Polyhedra.cpp.o
[ 61%] Building CXX object CMakeFiles/yade.dir/pkg/dem/Ig2_Box_Sphere_ScGeom.cpp.o
[ 61%] Building CXX object CMakeFiles/yade.dir/pkg/dem/JointedCohesiveFrictionalPM.cpp.o
[ 62%] Building CXX object CMakeFiles/yade.dir/pkg/dem/TriaxialCompressionEngine.cpp.o
[ 62%] Building CXX object CMakeFiles/yade.dir/pkg/dem/STLImporter.cpp.o
In file included from /home/jiadun/myYade/YadeCodes/trunk/pkg/dem/STLImporter.cpp:10:0:
/home/jiadun/myYade/YadeCodes/build/yade/lib/import/STLReader.hpp: In member function ‘bool STLReader::open_ascii(const char*, OutV, OutE, OutF, OutN) [with OutV = std::back_insert_iterator<std::vector<double> >; OutE = std::back_insert_iterator<std::vector<int> >; OutF = std::back_insert_iterator<std::vector<int> >; OutN = std::back_insert_iterator<std::vector<double> >]’:
/home/jiadun/myYade/YadeCodes/build/yade/lib/import/STLReader.hpp:120:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s %*s %f %f %f\n", &n[0], &n[1], &n[2]);
  ^
/home/jiadun/myYade/YadeCodes/build/yade/lib/import/STLReader.hpp:121:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s %*s");
  ^
/home/jiadun/myYade/YadeCodes/build/yade/lib/import/STLReader.hpp:122:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s %f %f %f\n", &v[0][0], &v[0][1], &v[0][2]);
  ^
/home/jiadun/myYade/YadeCodes/build/yade/lib/import/STLReader.hpp:123:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s %f %f %f\n", &v[1][0], &v[1][1], &v[1][2]);
  ^
/home/jiadun/myYade/YadeCodes/build/yade/lib/import/STLReader.hpp:124:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s %f %f %f\n", &v[2][0], &v[2][1], &v[2][2]);
  ^
/home/jiadun/myYade/YadeCodes/build/yade/lib/import/STLReader.hpp:125:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s"); // end loop
  ^
/home/jiadun/myYade/YadeCodes/build/yade/lib/import/STLReader.hpp:126:2: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
  fscanf(fp, "%*s"); // end facet
  ^
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Linking CXX shared library lib/x86_64-linux-gnu/libyade.so
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Scanning dependencies of target boot
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Linking CXX shared library lib/x86_64-linux-gnu/boot.so
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[ 99%] Built target _packSpheres
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[100%] Building CXX object py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
                 from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /home/jiadun/myYade/YadeCodes/trunk/py/_polyhedra_utils.cpp:17:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
Linking CXX shared library lib/x86_64-linux-gnu/_polyhedra_utils.so
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[100%] Building CXX object py/CMakeFiles/_utils.dir/_utils.cpp.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0,
                 from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /home/jiadun/myYade/YadeCodes/trunk/py/_utils.cpp:18:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
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jiadun@jiadun-Lenovo-IdeaPad-Z500:~/myYade/YadeCodes/build$ make install
[ 5%] Built target _GLViewer
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Install the project...
-- Install configuration: "Release"
-- Installing: /home/jiadun/bin/yade-2014-05-08.git-998a28d-batch
-- Installing: /home/jiadun/bin/yade-2014-05-08.git-998a28d
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/config.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/__init__.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/checkTestNormalInelasticity.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/checkWeight.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/checkViscElEng.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/checkWirePM.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/checkTestTriax.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/checkTestDummy.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/checkGravity.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/checkList.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/DEM-PFV-check.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/data/WallStressesCheckTest
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/data/checkTestTriax.spheres
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/checks/data/100spheres
-- Installing: /home/jiadun/share/doc/yade-2014-05-08.git-998a28d/img/yade-logo-note.png
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/boot.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/boot.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/libyade.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/libyade.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt/_GLViewer.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt/_GLViewer.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt/SerializableEditor.py
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-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt/ui_controller.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/export.py
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-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/plot.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/linterpolation.py
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-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/pbc.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/engines.py
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-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/clump.py
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/tests/wrapper.py
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-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/WeightedAverage2d.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/WeightedAverage2d.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_utils.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_utils.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_polyhedra_utils.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_polyhedra_utils.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_packPredicates.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_packPredicates.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_packSpheres.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_packSpheres.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_packObb.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_packObb.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/wrapper.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/wrapper.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
-- Installing: /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_customConverters.so
-- Set runtime path of "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/_customConverters.so" to "/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/qt:/home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/gts"
jiadun@jiadun-Lenovo-IdeaPad-Z500:~/myYade/YadeCodes/build$ cd
jiadun@jiadun-Lenovo-IdeaPad-Z500:~$ cd bin/
jiadun@jiadun-Lenovo-IdeaPad-Z500:~/bin$ ./yade-2014-05-08.git-998a28d
Welcome to Yade 2014-05-08.git-998a28d
TCP python prompt on localhost:9000, auth cookie `ekdyuc'
XMLRPC info provider on http://localhost:21000
[[ ^L clears screen, ^U kills line. F12 controller, F11 3d view (use h-key for showing help), F10 both, F9 generator, F8 plot. ]]

Yade [1]:

Does the above result mean that I successfully installed Yade from the source?

Best regards,
Jiadun

Hi,

it looks good.

Anton

2014-05-11 18:26 GMT+02:00 Jiadun Liu <email address hidden>:
> jiadun@jiadun-Lenovo-IdeaPad-Z500:~/bin$ ./yade-2014-05-08.git-998a28d
> Welcome to Yade 2014-05-08.git-998a28d
> TCP python prompt on localhost:9000, auth cookie `ekdyuc'
> XMLRPC info provider on http://localhost:21000
> [[ ^L clears screen, ^U kills line. F12 controller, F11 3d view (use h-key for showing help), F10 both, F9 generator, F8 plot. ]]
>
> Yade [1]:

Added to the above was the results from "make check"

jiadun@jiadun-Lenovo-IdeaPad-Z500:~/myYade/YadeCodes/build$ make check
Scanning dependencies of target check
testMatrix3 (yade.TestEigenWrapper)
Math: Matrix3 operations ... ok
testQuaternion (yade.TestEigenWrapper)
Math: Quaternion operations ... ok
testVector2 (yade.TestEigenWrapper)
Math: Vector2 operations ... ok
testVector3 (yade.TestEigenWrapper)
Math: Vector3 operations ... ok
testClassCtors (yade.TestObjectInstantiation)
Core: correct types are instantiated ... ok
testDispatcherCtor (yade.TestObjectInstantiation)
Core: dispatcher ctors with functors ... ok
testHidden (yade.TestObjectInstantiation)
Core: Attr::hidden ... ok
testInteractionLoopCtor (yade.TestObjectInstantiation)
Core: InteractionLoop special ctor ... ok
testInvalidAttr (yade.TestObjectInstantiation)
Core: invalid attribute access raises AttributeError ... ok
testNoSave (yade.TestObjectInstantiation)
Core: Attr::noSave ... ok
testParallelEngineCtor (yade.TestObjectInstantiation)
Core: ParallelEngine special ctor ... ok
testRootDerivedCtors_attrs_few (yade.TestObjectInstantiation)
Core: class ctor's attributes ... ok
testTriggerPostLoad (yade.TestObjectInstantiation)
Core: Attr::triggerPostLoad ... ok
testWrongFunctorType (yade.TestObjectInstantiation)
Core: dispatcher and functor type mismatch is detected ... ok
testErase (yade.TestBodies)
Bodies: erased bodies are None in python ... ok
testErasedAndNewlyCreatedSphere (yade.TestBodies)
Bodies: The bug is described in LP:1001194. If the new body was created after deletion of previous, it has no bounding box ... ok
testErasedIterate (yade.TestBodies)
Bodies: Iterator silently skips erased ones ... ok
testIterate (yade.TestBodies)
Bodies: Iteration ... ok
testLen (yade.TestBodies)
Bodies: len(O.bodies) ... ok
testNegativeIndex (yade.TestBodies)
Bodies: Negative index counts backwards (like python sequences). ... ok
testSaveAllClasses (yade.TestIO)
I/O: All classes can be saved and loaded with boost::serialization ... WARNING: cannot open files used for capillary law, all forces will be null. Instructions on how to download and install them is found here : https://yade-dem.org/wiki/CapillaryTriaxialTest.
ok
testEraseBodiesInInteraction (yade.TestInteractions) ... ok
testDead (yade.TestLoop)
Loop: dead engines are not run ... ok
testEnginesModificationInsideLoop (yade.TestLoop)
Loop: O.engines can be modified inside the loop transparently. ... ok
testSubstepping (yade.TestLoop)
Loop: substepping ... ok
testMaterialReturnsState (yade.TestMaterialStateAssociativity)
Material+State: CpmMat returns CpmState when asked for newAssocState ... ok
testThrowsAtBadCombination (yade.TestMaterialStateAssociativity)
Material+State: throws when body has material and state that don't work together. ... ok
testThrowsAtNullState (yade.TestMaterialStateAssociativity)
Material+State: throws when body has material but NULL state. ... ok
testAccess (yade.TestMaterials)
Material: find by index or label; KeyError raised for invalid label. ... ok
testIterate (yade.TestMaterials)
Material: iteration over O.materials ... ok
testLen (yade.TestMaterials)
Material: len(O.materials) ... ok
testNegativeIndex (yade.TestMaterials)
Material: negative index counts backwards. ... ok
testShared (yade.TestMaterials)
Material: shared_ptr's makes change in material immediate everywhere ... ok
testSharedAfterReload (yade.TestMaterials)
Material: shared_ptr's are preserved when saving/loading ... ok
testDegenerate (yade.TestPBC)
PBC: degenerate cell raises exception ... ok
testHomotheticResizeVel (yade.TestPBC)
PBC: homothetic cell deformation adjusts particle velocity ... ok
testKineticEnergy (yade.TestPBC)
PBC: utils.kineticEnergy considers only fluctuation velocity, not the velocity gradient ... ok
testL3GeomIncidentVelocity (yade.TestPBC)
PBC: L3Geom computes incident velocity correctly ... ok
testScGeomIncidentVelocity (yade.TestPBC)
PBC: ScGeom computes incident velocity correctly ... ok
testSetBox (yade.TestPBC)
PBC: setBox modifies hSize correctly ... ok
testTrsfChange (yade.TestPBC)
PBC: chaing trsf changes hSize0, but does not modify hSize ... ok
testVelGrad (yade.TestPBC)
PBC: velGrad changes hSize, accumulates in trsf ... ok
testConsistency (yade.TestSimpleClump)
Clump: ids and flags consistency ... ok
testStaticProperties (yade.TestSimpleClump)
Clump: mass, centroid, intertia ... ok
testVelocity (yade.TestSimpleClump)
Clump: velocities of member assigned by NewtonIntegrator ... ok
testMotion (yade.tests.cohesive-chain.TestCohesiveChain)
CohesiveChain: velocity/positions tested in transient dynamics and equilibrium state ... ok
SpherePack_toSimulation (yade.pack)
Doctest: yade.pack.SpherePack_toSimulation ... ok
addAutoData (yade.plot)
Doctest: yade.plot.addAutoData ... ok
addData (yade.plot)
Doctest: yade.plot.addData ... ok
plot (yade.plot)
Doctest: yade.plot.plot ... ok
saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt ... ok
SpherePWaveTimeStep (yade.utils)
Doctest: yade.utils.SpherePWaveTimeStep ... ok
saveVars (yade.utils)
Doctest: yade.utils.saveVars ... /home/jiadun/lib/x86_64-linux-gnu/yade-2014-05-08.git-998a28d/py/yade/utils.py:67: UserWarning: Overwriting yade.params.something which already exists.
  if mark in yade.params.__dict__: warnings.warn('Overwriting yade.params.%s which already exists.'%mark)
ok
sphere (yade.utils)
Doctest: yade.utils.sphere ... ok
typedEngine (yade.utils)
Doctest: yade.utils.typedEngine ... ok

----------------------------------------------------------------------
Ran 55 tests in 1.139s

OK
*** ALL TESTS PASSED ***
Welcome to Yade 2014-05-08.git-998a28d
###################################
running: checkTestNormalInelasticity.py
Status: success
___________________________________
###################################
running: checkWeight.py
Precalculated weight 4536.560323
Obtained weight 4536.560323
Status: success
___________________________________
###################################
running: checkViscElEng.py
Precalculated en value 0.736357
Obtained en value 0.736357
Status: success
___________________________________
###################################
running: checkWirePM.py
Status: success
___________________________________
###################################
running: checkTestTriax.py
Status: success
___________________________________
###################################
running: checkTestDummy.py
checkTest mechanism
Status: success
___________________________________
###################################
running: checkGravity.py
Status: success
___________________________________
###################################
Skipping checkList.py, because it is in SkipScripts
###################################
Skipping DEM-PFV-check.py, because it is in SkipScripts
Built target check

This question was expired because it remained in the 'Open' state without activity for the last 15 days.