only 1 core working out of 32

Hi Giulia,
Presently the prebuilt packages are compiled without openmp, i.e. not
parallelized. Not sure if/when it will be fixed.
For parallel simulations you need to compile from sources (with openmp
enabled, but it is the default).

Bruno

it's related to the self compiled version, too.
I compared the config.py in the build-folder. After I followed installation instructions from [1].
Have a look here:
libDir=os.path.abspath(prefix+'/'+libPATH+'/yade-2014-02-20.git-a7048f4')
confDir=os.environ['HOME']+'/.yade-2014-02-20.git-a7048f4'
libstdcxx=''
features=' vtk openmp gts qt4 opengl'.split(',')

the features variable is obviously wrong! There is no comma in the string.
If I look at an older state of the souce code (2013) it look like it should:
features=',vtk,openmp,gts,qt4,opengl'.split(',')

I think that this is the reason why some people do not success in running multicore simulations at the moment. (even people how compile sources at their own)
Up to now I was not able to check this, I will do tomorrow.

[1]https://yade-dem.org/doc/installation.html

Hi,

2014-02-26 20:46 GMT+01:00 Bruno Chareyre
<email address hidden>:
> Presently the prebuilt packages are compiled without openmp, i.e. not
> parallelized. Not sure if/when it will be fixed.

it seems, there were problems with that previously. Now all
packages starting from 1.07-0-55 are built with all possible
features except precise_i386.

Regards,

Anton

Hi Giulia,

2014-02-26 19:16 GMT+01:00 Giulia Macaro <email address hidden>:
> I'm running yade-1.07.0 --performance -j on a new Ubuntu machine. The machine has 32 cores (16 virtual), but no matter which number I specify with -j, yade only takes 1 core to run.

well, using "virtual" cores for intensive processes can slow down the
performance. Usually I switch off HyperThreading for machines, which
suppose to be used for Yade and any other DEM software.

> I've checked the CPU usage from system monitor and htop and I can see that it's not always the same processors being used (which means that all the processors are working fine), but only one at the time is working at 100%, most of the others are 0%, and a couple of them are 0.7% and 1.3%.
> I've run the same performance script on an old 8 cores machines: the cores are used as specified and, as expected, the velocity increases with the number of cores.

Please, show your CMakeCache.txt

Anton

2014-02-27 17:31 GMT+01:00 Alexander Eulitz [Eugen]
<email address hidden>:
> I compared the config.py in the build-folder. After I followed installation instructions from [1].
> Have a look here:
> libDir=os.path.abspath(prefix+'/'+libPATH+'/yade-2014-02-20.git-a7048f4')
> confDir=os.environ['HOME']+'/.yade-2014-02-20.git-a7048f4'
> libstdcxx=''
> features=' vtk openmp gts qt4 opengl'.split(',')

Thanks for catching a bug, Alexander.
I have just fixed that. But this config,py is used only to generate a long
description (metadata) [1] and does not influence any valuable parameters.

[1] https://github.com/yade/trunk/blob/master/py/config.py.in#L25

Regards,

Anton

@Anton (concerning Alexander remark) :

Does this mean that we can indeed expect real parallel computations (assuming OPENMP feature, and -j command) even without updating to the version you fixed ? Thanks,

Jerome

2014-02-28 10:21 GMT+01:00 jduriez <email address hidden>:
> Does this mean that we can indeed expect real parallel computations
> (assuming OPENMP feature, and -j command) even without updating to the
> version you fixed ?

Sure, it was only cosmetic fix.

Anton

Thank you all for your replies.

@ Bruno
Those tests were run with the last release yade-1.07.0 (from https://launchpad.net/yade/+download), not yade-daily, is the release not parallelized either?

I've tried one of the last trunk code (downloaded yesterday from https://github.com/yade/trunk/tree/f60e0c0315595842c853a0f154121a5d4e1449a2), and got
yade-Unknown -j16 --performance
Common time 1296.36890388 s
SCORE: 6332
Number of threads 16

And I've also tried with yade daily (from sudo apt-get install yade) and it is obviuosly much slower.
yade -j16 checkPerf.py
Common time 3245.34592605 s
SCORE: 4207
Number of threads 16

Basically every time I specify the option -jN, the new machine uses the same processor at 100% for the entire test. If I do not specify -jN, it uses 1 processor, but this always changes during the same test.
And the processors all work fine, while I was compiling the code, they were all going almost at full percentage.

@ Anton
How do I disable HyperThreading?
From the BIOS, in Performace/HyperThread control I can see there is the disabled and enabled option (right now enabled is selected). Is it from there? I just to want to make sure before changing something in the BIOS.
Below is my CMakeCache.txt for the trunk code (which gave a score od 6332).

I am wondering if I did something wrong while I was compiling yade, even though I'm sure I followed the same procedue I usually do in the old machine..
Thanks again
Giulia

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# For build in directory: /home/giulia/YetAnotherDynamicEngine/14.02.27_yade/trunk-master
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# If you do not want to change any of the values, simply exit the editor.
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QT_QJPCODECS_PLUGIN_DEBUG:FILEPATH=QT_QJPCODECS_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QJPCODECS_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/codecs/libqjpcodecs.so

//Path to a library.
QT_QJPEG_PLUGIN_DEBUG:FILEPATH=QT_QJPEG_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QJPEG_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/imageformats/libqjpeg.so

//Path to a library.
QT_QKRCODECS_PLUGIN_DEBUG:FILEPATH=QT_QKRCODECS_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QKRCODECS_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/codecs/libqkrcodecs.so

//The qmake executable for the Qt installation to use
QT_QMAKE_EXECUTABLE:FILEPATH=/usr/bin/qmake

//Path to a library.
QT_QMNG_PLUGIN_DEBUG:FILEPATH=QT_QMNG_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QMNG_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/imageformats/libqmng.so

//Path to a library.
QT_QSQLDB2_PLUGIN_DEBUG:FILEPATH=QT_QSQLDB2_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSQLDB2_PLUGIN_RELEASE:FILEPATH=QT_QSQLDB2_PLUGIN_RELEASE-NOTFOUND

//Path to a library.
QT_QSQLIBASE_PLUGIN_DEBUG:FILEPATH=QT_QSQLIBASE_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSQLIBASE_PLUGIN_RELEASE:FILEPATH=QT_QSQLIBASE_PLUGIN_RELEASE-NOTFOUND

//Path to a library.
QT_QSQLITE2_PLUGIN_DEBUG:FILEPATH=QT_QSQLITE2_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSQLITE2_PLUGIN_RELEASE:FILEPATH=QT_QSQLITE2_PLUGIN_RELEASE-NOTFOUND

//Path to a library.
QT_QSQLITE_PLUGIN_DEBUG:FILEPATH=QT_QSQLITE_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSQLITE_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/sqldrivers/libqsqlite.so

//Path to a library.
QT_QSQLMYSQL_PLUGIN_DEBUG:FILEPATH=QT_QSQLMYSQL_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSQLMYSQL_PLUGIN_RELEASE:FILEPATH=QT_QSQLMYSQL_PLUGIN_RELEASE-NOTFOUND

//Path to a library.
QT_QSQLOCI_PLUGIN_DEBUG:FILEPATH=QT_QSQLOCI_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSQLOCI_PLUGIN_RELEASE:FILEPATH=QT_QSQLOCI_PLUGIN_RELEASE-NOTFOUND

//Path to a library.
QT_QSQLODBC_PLUGIN_DEBUG:FILEPATH=QT_QSQLODBC_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSQLODBC_PLUGIN_RELEASE:FILEPATH=QT_QSQLODBC_PLUGIN_RELEASE-NOTFOUND

//Path to a library.
QT_QSQLPSQL_PLUGIN_DEBUG:FILEPATH=QT_QSQLPSQL_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSQLPSQL_PLUGIN_RELEASE:FILEPATH=QT_QSQLPSQL_PLUGIN_RELEASE-NOTFOUND

//Path to a library.
QT_QSQLTDS_PLUGIN_DEBUG:FILEPATH=QT_QSQLTDS_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSQLTDS_PLUGIN_RELEASE:FILEPATH=QT_QSQLTDS_PLUGIN_RELEASE-NOTFOUND

//Path to a library.
QT_QSVGICON_PLUGIN_DEBUG:FILEPATH=QT_QSVGICON_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSVGICON_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/iconengines/libqsvgicon.so

//Path to a library.
QT_QSVG_PLUGIN_DEBUG:FILEPATH=QT_QSVG_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QSVG_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/imageformats/libqsvg.so

//Path to a library.
QT_QT3SUPPORTWIDGETS_PLUGIN_DEBUG:FILEPATH=QT_QT3SUPPORTWIDGETS_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QT3SUPPORTWIDGETS_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/designer/libqt3supportwidgets.so

//Path to a file.
QT_QT3SUPPORT_INCLUDE_DIR:PATH=/usr/include/qt4/Qt3Support

//The Qt QT3SUPPORT library
QT_QT3SUPPORT_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQt3Support.so;debug;/usr/lib/x86_64-linux-gnu/libQt3Support.so

//Path to a library.
QT_QT3SUPPORT_LIBRARY_DEBUG:FILEPATH=QT_QT3SUPPORT_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QT3SUPPORT_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQt3Support.so

//Path to a library.
QT_QTACCESSIBLECOMPATWIDGETS_PLUGIN_DEBUG:FILEPATH=QT_QTACCESSIBLECOMPATWIDGETS_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QTACCESSIBLECOMPATWIDGETS_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/accessible/libqtaccessiblecompatwidgets.so

//Path to a library.
QT_QTACCESSIBLEWIDGETS_PLUGIN_DEBUG:FILEPATH=QT_QTACCESSIBLEWIDGETS_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QTACCESSIBLEWIDGETS_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/accessible/libqtaccessiblewidgets.so

//Path to a file.
QT_QTASSISTANTCLIENT_INCLUDE_DIR:PATH=QT_QTASSISTANTCLIENT_INCLUDE_DIR-NOTFOUND

//The Qt QTASSISTANTCLIENT library
QT_QTASSISTANTCLIENT_LIBRARY:STRING=

//Path to a library.
QT_QTASSISTANTCLIENT_LIBRARY_DEBUG:FILEPATH=QT_QTASSISTANTCLIENT_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTASSISTANTCLIENT_LIBRARY_RELEASE:FILEPATH=QT_QTASSISTANTCLIENT_LIBRARY_RELEASE-NOTFOUND

//Path to a file.
QT_QTASSISTANT_INCLUDE_DIR:PATH=QT_QTASSISTANT_INCLUDE_DIR-NOTFOUND

//The Qt QTASSISTANT library
QT_QTASSISTANT_LIBRARY:STRING=

//Path to a library.
QT_QTASSISTANT_LIBRARY_DEBUG:FILEPATH=QT_QTASSISTANT_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTASSISTANT_LIBRARY_RELEASE:FILEPATH=QT_QTASSISTANT_LIBRARY_RELEASE-NOTFOUND

//The Qt QTCLUCENE library
QT_QTCLUCENE_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtCLucene.so;debug;/usr/lib/x86_64-linux-gnu/libQtCLucene.so

//Path to a library.
QT_QTCLUCENE_LIBRARY_DEBUG:FILEPATH=QT_QTCLUCENE_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTCLUCENE_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtCLucene.so

//Path to a file.
QT_QTCORE_INCLUDE_DIR:PATH=/usr/include/qt4/QtCore

//The Qt QTCORE library
QT_QTCORE_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtCore.so;debug;/usr/lib/x86_64-linux-gnu/libQtCore.so

//Path to a library.
QT_QTCORE_LIBRARY_DEBUG:FILEPATH=QT_QTCORE_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTCORE_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtCore.so

//Path to a file.
QT_QTDBUS_INCLUDE_DIR:PATH=/usr/include/qt4/QtDBus

//The Qt QTDBUS library
QT_QTDBUS_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtDBus.so;debug;/usr/lib/x86_64-linux-gnu/libQtDBus.so

//Path to a library.
QT_QTDBUS_LIBRARY_DEBUG:FILEPATH=QT_QTDBUS_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTDBUS_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtDBus.so

//Path to a file.
QT_QTDECLARATIVE_INCLUDE_DIR:PATH=/usr/include/qt4/QtDeclarative

//The Qt QTDECLARATIVE library
QT_QTDECLARATIVE_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtDeclarative.so;debug;/usr/lib/x86_64-linux-gnu/libQtDeclarative.so

//Path to a library.
QT_QTDECLARATIVE_LIBRARY_DEBUG:FILEPATH=QT_QTDECLARATIVE_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTDECLARATIVE_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtDeclarative.so

//Path to a file.
QT_QTDESIGNERCOMPONENTS_INCLUDE_DIR:PATH=/usr/include/qt4/QtDesigner

//The Qt QTDESIGNERCOMPONENTS library
QT_QTDESIGNERCOMPONENTS_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtDesignerComponents.so;debug;/usr/lib/x86_64-linux-gnu/libQtDesignerComponents.so

//Path to a library.
QT_QTDESIGNERCOMPONENTS_LIBRARY_DEBUG:FILEPATH=QT_QTDESIGNERCOMPONENTS_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTDESIGNERCOMPONENTS_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtDesignerComponents.so

//Path to a file.
QT_QTDESIGNER_INCLUDE_DIR:PATH=/usr/include/qt4/QtDesigner

//The Qt QTDESIGNER library
QT_QTDESIGNER_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtDesigner.so;debug;/usr/lib/x86_64-linux-gnu/libQtDesigner.so

//Path to a library.
QT_QTDESIGNER_LIBRARY_DEBUG:FILEPATH=QT_QTDESIGNER_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTDESIGNER_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtDesigner.so

//Path to a file.
QT_QTGUI_INCLUDE_DIR:PATH=/usr/include/qt4/QtGui

//The Qt QTGUI library
QT_QTGUI_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtGui.so;debug;/usr/lib/x86_64-linux-gnu/libQtGui.so

//Path to a library.
QT_QTGUI_LIBRARY_DEBUG:FILEPATH=QT_QTGUI_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTGUI_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtGui.so

//Path to a file.
QT_QTHELP_INCLUDE_DIR:PATH=/usr/include/qt4/QtHelp

//The Qt QTHELP library
QT_QTHELP_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtHelp.so;debug;/usr/lib/x86_64-linux-gnu/libQtHelp.so

//Path to a library.
QT_QTHELP_LIBRARY_DEBUG:FILEPATH=QT_QTHELP_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTHELP_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtHelp.so

//Path to a library.
QT_QTIFF_PLUGIN_DEBUG:FILEPATH=QT_QTIFF_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QTIFF_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/imageformats/libqtiff.so

//Path to a file.
QT_QTMOTIF_INCLUDE_DIR:PATH=QT_QTMOTIF_INCLUDE_DIR-NOTFOUND

//The Qt QTMOTIF library
QT_QTMOTIF_LIBRARY:STRING=

//Path to a library.
QT_QTMOTIF_LIBRARY_DEBUG:FILEPATH=QT_QTMOTIF_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTMOTIF_LIBRARY_RELEASE:FILEPATH=QT_QTMOTIF_LIBRARY_RELEASE-NOTFOUND

//Path to a file.
QT_QTMULTIMEDIA_INCLUDE_DIR:PATH=QT_QTMULTIMEDIA_INCLUDE_DIR-NOTFOUND

//The Qt QTMULTIMEDIA library
QT_QTMULTIMEDIA_LIBRARY:STRING=

//Path to a library.
QT_QTMULTIMEDIA_LIBRARY_DEBUG:FILEPATH=QT_QTMULTIMEDIA_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTMULTIMEDIA_LIBRARY_RELEASE:FILEPATH=QT_QTMULTIMEDIA_LIBRARY_RELEASE-NOTFOUND

//Path to a file.
QT_QTNETWORK_INCLUDE_DIR:PATH=/usr/include/qt4/QtNetwork

//The Qt QTNETWORK library
QT_QTNETWORK_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtNetwork.so;debug;/usr/lib/x86_64-linux-gnu/libQtNetwork.so

//Path to a library.
QT_QTNETWORK_LIBRARY_DEBUG:FILEPATH=QT_QTNETWORK_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTNETWORK_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtNetwork.so

//Path to a file.
QT_QTNSPLUGIN_INCLUDE_DIR:PATH=QT_QTNSPLUGIN_INCLUDE_DIR-NOTFOUND

//The Qt QTNSPLUGIN library
QT_QTNSPLUGIN_LIBRARY:STRING=

//Path to a library.
QT_QTNSPLUGIN_LIBRARY_DEBUG:FILEPATH=QT_QTNSPLUGIN_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTNSPLUGIN_LIBRARY_RELEASE:FILEPATH=QT_QTNSPLUGIN_LIBRARY_RELEASE-NOTFOUND

//Path to a file.
QT_QTOPENGL_INCLUDE_DIR:PATH=/usr/include/qt4/QtOpenGL

//The Qt QTOPENGL library
QT_QTOPENGL_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtOpenGL.so;debug;/usr/lib/x86_64-linux-gnu/libQtOpenGL.so

//Path to a library.
QT_QTOPENGL_LIBRARY_DEBUG:FILEPATH=QT_QTOPENGL_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTOPENGL_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtOpenGL.so

//Path to a library.
QT_QTRACEGRAPHICSSYSTEM_PLUGIN_DEBUG:FILEPATH=QT_QTRACEGRAPHICSSYSTEM_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QTRACEGRAPHICSSYSTEM_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/graphicssystems/libqtracegraphicssystem.so

//Path to a library.
QT_QTSCRIPTDBUS_PLUGIN_DEBUG:FILEPATH=QT_QTSCRIPTDBUS_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QTSCRIPTDBUS_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/script/libqtscriptdbus.so

//Path to a file.
QT_QTSCRIPTTOOLS_INCLUDE_DIR:PATH=/usr/include/qt4/QtScriptTools

//The Qt QTSCRIPTTOOLS library
QT_QTSCRIPTTOOLS_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtScriptTools.so;debug;/usr/lib/x86_64-linux-gnu/libQtScriptTools.so

//Path to a library.
QT_QTSCRIPTTOOLS_LIBRARY_DEBUG:FILEPATH=QT_QTSCRIPTTOOLS_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTSCRIPTTOOLS_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtScriptTools.so

//Path to a file.
QT_QTSCRIPT_INCLUDE_DIR:PATH=/usr/include/qt4/QtScript

//The Qt QTSCRIPT library
QT_QTSCRIPT_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtScript.so;debug;/usr/lib/x86_64-linux-gnu/libQtScript.so

//Path to a library.
QT_QTSCRIPT_LIBRARY_DEBUG:FILEPATH=QT_QTSCRIPT_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTSCRIPT_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtScript.so

//Path to a file.
QT_QTSQL_INCLUDE_DIR:PATH=/usr/include/qt4/QtSql

//The Qt QTSQL library
QT_QTSQL_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtSql.so;debug;/usr/lib/x86_64-linux-gnu/libQtSql.so

//Path to a library.
QT_QTSQL_LIBRARY_DEBUG:FILEPATH=QT_QTSQL_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTSQL_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtSql.so

//Path to a file.
QT_QTSVG_INCLUDE_DIR:PATH=/usr/include/qt4/QtSvg

//The Qt QTSVG library
QT_QTSVG_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtSvg.so;debug;/usr/lib/x86_64-linux-gnu/libQtSvg.so

//Path to a library.
QT_QTSVG_LIBRARY_DEBUG:FILEPATH=QT_QTSVG_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTSVG_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtSvg.so

//Path to a file.
QT_QTTEST_INCLUDE_DIR:PATH=/usr/include/qt4/QtTest

//The Qt QTTEST library
QT_QTTEST_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtTest.so;debug;/usr/lib/x86_64-linux-gnu/libQtTest.so

//Path to a library.
QT_QTTEST_LIBRARY_DEBUG:FILEPATH=QT_QTTEST_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTTEST_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtTest.so

//Path to a file.
QT_QTUITOOLS_INCLUDE_DIR:PATH=/usr/include/qt4/QtUiTools

//The Qt QTUITOOLS library
QT_QTUITOOLS_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtUiTools.a;debug;/usr/lib/x86_64-linux-gnu/libQtUiTools.a

//Path to a library.
QT_QTUITOOLS_LIBRARY_DEBUG:FILEPATH=QT_QTUITOOLS_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTUITOOLS_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtUiTools.a

//Path to a library.
QT_QTWCODECS_PLUGIN_DEBUG:FILEPATH=QT_QTWCODECS_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QTWCODECS_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/codecs/libqtwcodecs.so

//Path to a file.
QT_QTWEBKIT_INCLUDE_DIR:PATH=/usr/include/qt4/QtWebKit

//The Qt QTWEBKIT library
QT_QTWEBKIT_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtWebKit.so;debug;/usr/lib/x86_64-linux-gnu/libQtWebKit.so

//Path to a library.
QT_QTWEBKIT_LIBRARY_DEBUG:FILEPATH=QT_QTWEBKIT_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTWEBKIT_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtWebKit.so

//Path to a file.
QT_QTXMLPATTERNS_INCLUDE_DIR:PATH=/usr/include/qt4/QtXmlPatterns

//The Qt QTXMLPATTERNS library
QT_QTXMLPATTERNS_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtXmlPatterns.so;debug;/usr/lib/x86_64-linux-gnu/libQtXmlPatterns.so

//Path to a library.
QT_QTXMLPATTERNS_LIBRARY_DEBUG:FILEPATH=QT_QTXMLPATTERNS_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTXMLPATTERNS_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtXmlPatterns.so

//Path to a file.
QT_QTXML_INCLUDE_DIR:PATH=/usr/include/qt4/QtXml

//The Qt QTXML library
QT_QTXML_LIBRARY:STRING=optimized;/usr/lib/x86_64-linux-gnu/libQtXml.so;debug;/usr/lib/x86_64-linux-gnu/libQtXml.so

//Path to a library.
QT_QTXML_LIBRARY_DEBUG:FILEPATH=QT_QTXML_LIBRARY_DEBUG-NOTFOUND

//Path to a library.
QT_QTXML_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libQtXml.so

//Path to a library.
QT_QWEBVIEW_PLUGIN_DEBUG:FILEPATH=QT_QWEBVIEW_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QWEBVIEW_PLUGIN_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/qt4/plugins/designer/libqwebview.so

//Path to a library.
QT_QWSTSLIBMOUSEHANDLER_PLUGIN_DEBUG:FILEPATH=QT_QWSTSLIBMOUSEHANDLER_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_QWSTSLIBMOUSEHANDLER_PLUGIN_RELEASE:FILEPATH=QT_QWSTSLIBMOUSEHANDLER_PLUGIN_RELEASE-NOTFOUND

//Path to a program.
QT_RCC_EXECUTABLE:FILEPATH=/usr/bin/rcc

//Path to a library.
QT_TASKMENUEXTENSION_PLUGIN_DEBUG:FILEPATH=QT_TASKMENUEXTENSION_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_TASKMENUEXTENSION_PLUGIN_RELEASE:FILEPATH=QT_TASKMENUEXTENSION_PLUGIN_RELEASE-NOTFOUND

//The location of the Qt translations
QT_TRANSLATIONS_DIR:PATH=/usr/share/qt4/translations

//Path to a program.
QT_UIC3_EXECUTABLE:FILEPATH=/usr/bin/uic3

//Path to a program.
QT_UIC_EXECUTABLE:FILEPATH=/usr/bin/uic-qt4

//Path to a library.
QT_WORLDTIMECLOCKPLUGIN_PLUGIN_DEBUG:FILEPATH=QT_WORLDTIMECLOCKPLUGIN_PLUGIN_DEBUG-NOTFOUND

//Path to a library.
QT_WORLDTIMECLOCKPLUGIN_PLUGIN_RELEASE:FILEPATH=QT_WORLDTIMECLOCKPLUGIN_PLUGIN_RELEASE-NOTFOUND

//The directory containing a CMake configuration file for VTK.
VTK_DIR:PATH=/usr/lib/vtk-5.8

//Dependencies for target
WeightedAverage2d_LIB_DEPENDS:STATIC=

//Path to a file.
X11_ICE_INCLUDE_PATH:PATH=/usr/include

//Path to a library.
X11_ICE_LIB:FILEPATH=/usr/lib/x86_64-linux-gnu/libICE.so

//Path to a file.
X11_SM_INCLUDE_PATH:PATH=/usr/include

//Path to a library.
X11_SM_LIB:FILEPATH=/usr/lib/x86_64-linux-gnu/libSM.so

//Path to a file.
X11_X11_INCLUDE_PATH:PATH=/usr/include

//Path to a library.
X11_X11_LIB:FILEPATH=/usr/lib/x86_64-linux-gnu/libX11.so

//Path to a file.
X11_XRes_INCLUDE_PATH:PATH=X11_XRes_INCLUDE_PATH-NOTFOUND

//Path to a library.
X11_XRes_LIB:FILEPATH=X11_XRes_LIB-NOTFOUND

//Path to a file.
X11_XShm_INCLUDE_PATH:PATH=/usr/include

//Path to a file.
X11_XSync_INCLUDE_PATH:PATH=/usr/include

//Path to a file.
X11_XTest_INCLUDE_PATH:PATH=X11_XTest_INCLUDE_PATH-NOTFOUND

//Path to a library.
X11_XTest_LIB:FILEPATH=X11_XTest_LIB-NOTFOUND

//Path to a file.
X11_Xaccessrules_INCLUDE_PATH:PATH=X11_Xaccessrules_INCLUDE_PATH-NOTFOUND

//Path to a file.
X11_Xaccessstr_INCLUDE_PATH:PATH=/usr/include

//Path to a file.
X11_Xau_INCLUDE_PATH:PATH=/usr/include

//Path to a library.
X11_Xau_LIB:FILEPATH=/usr/lib/x86_64-linux-gnu/libXau.so

//Path to a file.
X11_Xcomposite_INCLUDE_PATH:PATH=X11_Xcomposite_INCLUDE_PATH-NOTFOUND

//Path to a library.
X11_Xcomposite_LIB:FILEPATH=X11_Xcomposite_LIB-NOTFOUND

//Path to a file.
X11_Xcursor_INCLUDE_PATH:PATH=X11_Xcursor_INCLUDE_PATH-NOTFOUND

//Path to a library.
X11_Xcursor_LIB:FILEPATH=X11_Xcursor_LIB-NOTFOUND

//Path to a file.
X11_Xdamage_INCLUDE_PATH:PATH=X11_Xdamage_INCLUDE_PATH-NOTFOUND

//Path to a library.
X11_Xdamage_LIB:FILEPATH=X11_Xdamage_LIB-NOTFOUND

//Path to a file.
X11_Xdmcp_INCLUDE_PATH:PATH=/usr/include

//Path to a library.
X11_Xdmcp_LIB:FILEPATH=/usr/lib/x86_64-linux-gnu/libXdmcp.so

//Path to a library.
X11_Xext_LIB:FILEPATH=/usr/lib/x86_64-linux-gnu/libXext.so

//Path to a file.
X11_Xfixes_INCLUDE_PATH:PATH=/usr/include

//Path to a library.
X11_Xfixes_LIB:FILEPATH=/usr/lib/x86_64-linux-gnu/libXfixes.so

//Path to a file.
X11_Xft_INCLUDE_PATH:PATH=/usr/include

//Path to a library.
X11_Xft_LIB:FILEPATH=/usr/lib/x86_64-linux-gnu/libXft.so

//Path to a file.
X11_Xi_INCLUDE_PATH:PATH=/usr/include

//Path to a library.
X11_Xi_LIB:FILEPATH=/usr/lib/x86_64-linux-gnu/libXi.so

//Path to a file.
X11_Xinerama_INCLUDE_PATH:PATH=X11_Xinerama_INCLUDE_PATH-NOTFOUND

//Path to a library.
X11_Xinerama_LIB:FILEPATH=X11_Xinerama_LIB-NOTFOUND

//Path to a file.
X11_Xinput_INCLUDE_PATH:PATH=/usr/include

//Path to a library.
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adding

os.system("taskset -p 0xff %d" % os.getpid())

to the top of your script (temporary) fixes the problem

christian

OpenBLAS is 0.1alpha2.2-3

I'm now understanding a bit better that the email Anton linked. I've just realized that I don't have openblas installed in the old machine (which works fine). Should I uninstall openblas and recompile yade? I'm not doing fluid coupling, so it won't change anything for me, am I right?

Thanks,
Giulia

Sorry Christian, I've seen your reply after I had sent mine.

I've added os.system("taskset -p 0xff %d" % os.getpid()) to the top of the checkPerf.py script and run it again with the trunk version.
Openblas is still installed, but now HyperThreading is disabled.

Before:
yade-Unknown -j16 --performance
Common time 1296.36890388 s
SCORE: 6332
Number of threads 16

Now (os.system("taskset -p 0xff %d" % os.getpid()) added to the script):
yade-Unknown -j16 checkPerf.py
Common time 586.632955074 s
SCORE: 15187
Number of threads 16

Definitely better! But still only 8 out of 16 CPU are used, between 30 and 50%. Instead 8 cores were never used for the entire time that yade was running.
Is there anything else I could do?

Thanks

>it won't change anything for me, am I right?

Yes.

> Definitely better! But still only 8 out of 16 CPU are used, between 30 and 50%.
> Instead 8 cores were never used for the entire time that yade was running.

You have 8 physical cores, which can be hyperthreaded to achieve 16 virtual cores.

> Openblas is still installed, but now HyperThreading is disabled.

So now you can only use your 8 physical cores (most efficient for DEM, perfect).

> Definitely better! But still only 8 out of 16 CPU are used, between 30 and 50%.
> Instead 8 cores were never used for the entire time that yade was running.
> Is there anything else I could do?

Nope, you did it, everything is fine.

cheers,

christian

forgot to say that you should not use a higher value than 8 in the -j option:

yade-Unknown -j8 checkPerf.py

Sorry, maybe I didn't explained myself correctly. The machine has 32 CPU when HyperThreading is enabled, 16 CPU when HT is disabled. So I should be able to use to -j16 even when HT is disabled, right?

Summarizing, using the trunk [1], I've got:

Test #1 openblas installed, HT enabled
yade-Unknown -j16 --performance
Common time 1296.36890388 s
SCORE: 6332
Number of threads 16
only 1 CPU is used at 100%, the others 31 are free

Test #2 openblas installed, HT disabled, os.system("taskset -p 0xff %d" % os.getpid()) added to the script
yade-Unknown -j16 checkPerf.py
Common time 586.632955074 s
SCORE: 15187
Number of threads 16
8 CPU are used at about 30-50%, 8 are free

Test #3 openblas uninstalled, HT disabled
yade-Unknown -j16 --performance
Common time 615.584682941 s
SCORE: 13186
Number of threads 16
16 CPU are used at about 30-50% (one of them sometimes is used up to 60 or 70%)

I don't understand why, but it seems that test #2 is faster than #3, or maybe it's just a coincidence . I'm happy with both.

Thank to you all for your help
Giulia

[1] https://github.com/yade/trunk/tree/f60e0c0315595842c853a0f154121a5d4e1449a2

Thanks Anton Gladky, that solved my question.

Also Christian's suggestion (#10) solved my problem, but there isn't any "This solved my problem" button next to it. Thanks.

Giulia, please, let us know, what operating system you are
using. So we will be able to backport fixed openblas.

Anton

2014-02-28 19:21 GMT+01:00 Giulia Macaro <email address hidden>:
> Question #244634 on Yade changed:
> https://answers.launchpad.net/yade/+question/244634
>
> Giulia Macaro posted a new comment:
> Also Christian's suggestion (#10) solved my problem, but there isn't any
> "This solved my problem" button next to it. Thanks.

I'm using Ubuntu 12.04 (precise) 64-bit / Kernel Linux 3.8.0-36-generic / GNOME 3.4.2
running on an Intel® Xeon(R) CPU E5-2687W v2 @ 3.40GHz x17.
And the version of openblas is 0.1alpha2.2-3.
Let me know if you need other info.

Giulia