Problems with scons PREFIX=/home/daniela/YADE

Hi, Daniela,

what operating system do you use?

Anton

Hi Anton,

kUbuntu 10.10
I read another message from someone with the same problem, and tried to fix it using "scons clean" as suggested. After that I wrote "./yade-bzr2880 --debug --rebuild" and obtained the following error:

C py/wrapper/yadeWrapper.cpp
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/ymport.py

scons: *** Found dependency cycle(s):
  Internal Error: no cycle found for node /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libTriaxialStressController.so (<SCons.Node.FS.File object at 0x403e850>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/YADE/lib/yade-bzr2880/dbg (<SCons.Node.FS.Dir object at 0x1d19c50>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libSTLImporter.so (<SCons.Node.FS.File object at 0x4120bd0>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/build-bzr2880/dbg/libTriaxialStressController.so (<SCons.Node.FS.File object at 0x3fabd10>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/build-bzr2880/dbg/libTriaxialStateRecorder.so (<SCons.Node.FS.File object at 0x4a56610>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libCapillaryStressRecorder.so (<SCons.Node.FS.File object at 0x3fab910>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libTriaxialCompressionEngine.so (<SCons.Node.FS.File object at 0x44df950>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libConcretePM.so (<SCons.Node.FS.File object at 0x4475150>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/build-bzr2880/dbg/libRockPM.so (<SCons.Node.FS.File object at 0x32565d0>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/build-bzr2880/dbg/libTriaxialCompressionEngine.so (<SCons.Node.FS.File object at 0x44c8e10>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libRockPM.so (<SCons.Node.FS.File object at 0x326c110>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libSpherePack.so (<SCons.Node.FS.File object at 0x4656250>) in state pending
  Internal Error: no cycle found for node /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libTriaxialStateRecorder.so (<SCons.Node.FS.File object at 0x4af2550>) in state pending
  /home/dmaionchi/build-bzr2880/dbg/libShop.so -> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libShop.so -> /home/dmaionchi/build-bzr2880/dbg/libGl1_NormPhys.so -> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libGl1_NormPhys.so -> /home/dmaionchi/build-bzr2880/dbg/libShop.so
  /home/dmaionchi/build-bzr2880/dbg/libGl1_NormPhys.so -> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libGl1_NormPhys.so -> /home/dmaionchi/build-bzr2880/dbg/libShop.so -> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libShop.so -> /home/dmaionchi/build-bzr2880/dbg/libGl1_NormPhys.so
  /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libShop.so -> /home/dmaionchi/build-bzr2880/dbg/libGl1_NormPhys.so -> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libGl1_NormPhys.so -> /home/dmaionchi/build-bzr2880/dbg/libShop.so -> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/plugins/libShop.so

File "/usr/lib/scons/SCons/Taskmaster.py", line 1011, in cleanup
Traceback (most recent call last):
  File "./yade-bzr2880", line 51, in <module>
    if subprocess.call(cmd): raise RuntimeError('Error rebuilding Yade (--rebuild).')
RuntimeError: Error rebuilding Yade (--rebuild).

Thanks for the help
Daniela

Adjust chunkSize = 2 (or even more) in your scons profile and compile again.
It should fix your problem which I also experienced some time ago.
HTH, Chiara

On 4 July 2011 13:50, Daniela <email address hidden> wrote:

> New question #163713 on Yade:
> https://answers.launchpad.net/yade/+question/163713
>
> Hi!
> I'm trying to install Yade, but I cannot understand what is going wrong
> with it.
> At the end of the compilation it shows messages like "scons: *** Found
> dependency cycle(s):" and many "internal erros".
> Could someone please help me solving this problem?
> Thanks a lot. Daniela.
>
> scons: Reading SConscript files ...
> @@@ Using profile default (scons.profile-default) @@@
> Eigen 2 math library will be used
> Yade version is `bzr2880' (bzr2880), installed files will be suffixed with
> `-bzr2880'.
> All intermediary files will be in `/home/dmaionchi/build-bzr2880'.
> Mkdir("/home/dmaionchi/build-bzr2880")
> Checking whether c++ compiler "g++" works...yes
> Finding libstdc++ library... (cached) /usr/lib/libstdc++.so.6
> Checking for pthread_exit(NULL) in C library pthread... yes
> Checking for Python development files... ok
> Checking for C++ header file numpy/ndarrayobject.h... yes
> Checking for required python modules... (cached) all ok
> Checking boost libraries... all ok
> Checking for C++ header file boost/foreach.hpp... yes
> Checking for C++ header file Eigen/Core... yes
> Checking for C++ header file loki/NullType.h... yes
> Checking for glutGetModifiers() in C++ library glut... yes
> Checking for QGLViewer() in C++ library qglviewer-qt4... yes
> Checking for vtkInstantiator::New() in C++ library vtkCommon... yes
> Checking for gts_object_class() in C++ library gts... yes
> Checking for log4cxx::Logger::getLogger("") in C++ library log4cxx... yes
> Deleting extra plugin
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/checkList.py
> Deleting extra plugin
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/checkWeight.py
> Deleting extra plugin
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/checkTestNormalInelasticity.py
> Deleting extra plugin
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/checkTestDummy.py
> Deleting extra plugin
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/checkTestTriax.py
> Deleting extra plugin
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/data/checkTestTriax.spheres
> Deleting extra plugin
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/data/WallStressesCheckTest
> scons: done reading SConscript files.
> scons: Building targets ...
> > /home/dmaionchi/YADE/bin/yade-bzr2880
> Chmod("/home/dmaionchi/YADE/bin/yade-bzr2880", 0755)
> > /home/dmaionchi/YADE/bin/yade-bzr2880-batch
> Chmod("/home/dmaionchi/YADE/bin/yade-bzr2880-batch", 0755)
> C py/3rd-party/pygts-0.3.1/cleanup.c
> In file included from /usr/include/python2.6/Python.h:8,
> from py/3rd-party/pygts-0.3.1/pygts.h:39,
> from py/3rd-party/pygts-0.3.1/cleanup.c:36:
> /usr/include/python2.6/pyconfig.h:1031: warning: "_POSIX_C_SOURCE"
> redefined
> /usr/include/features.h:213: note: this is the location of the previous
> definition
> C py/3rd-party/pygts-0.3.1/face.c
> In file included from /usr/include/python2.6/Python.h:8,
> from py/3rd-party/pygts-0.3.1/pygts.h:39,
> from py/3rd-party/pygts-0.3.1/face.c:28:
> /usr/include/python2.6/pyconfig.h:1031: warning: "_POSIX_C_SOURCE"
> redefined
> /usr/include/features.h:213: note: this is the location of the previous
> definition
> C py/3rd-party/pygts-0.3.1/edge.c
> In file included from /usr/include/python2.6/Python.h:8,
> from py/3rd-party/pygts-0.3.1/pygts.h:39,
> from py/3rd-party/pygts-0.3.1/edge.c:28:
> /usr/include/python2.6/pyconfig.h:1031: warning: "_POSIX_C_SOURCE"
> redefined
> /usr/include/features.h:213: note: this is the location of the previous
> definition
> C py/3rd-party/pygts-0.3.1/object.c
> In file included from /usr/include/python2.6/Python.h:8,
> from py/3rd-party/pygts-0.3.1/pygts.h:39,
> from py/3rd-party/pygts-0.3.1/object.c:28:
> /usr/include/python2.6/pyconfig.h:1031: warning: "_POSIX_C_SOURCE"
> redefined
> /usr/include/features.h:213: note: this is the location of the previous
> definition
> C py/3rd-party/pygts-0.3.1/point.c
> In file included from /usr/include/python2.6/Python.h:8,
> from py/3rd-party/pygts-0.3.1/pygts.h:39,
> from py/3rd-party/pygts-0.3.1/point.c:28:
> /usr/include/python2.6/pyconfig.h:1031: warning: "_POSIX_C_SOURCE"
> redefined
> /usr/include/features.h:213: note: this is the location of the previous
> definition
> C py/3rd-party/pygts-0.3.1/pygts.c
> In file included from /usr/include/python2.6/Python.h:8,
> from py/3rd-party/pygts-0.3.1/pygts.h:39,
> from py/3rd-party/pygts-0.3.1/pygts.c:28:
> /usr/include/python2.6/pyconfig.h:1031: warning: "_POSIX_C_SOURCE"
> redefined
> /usr/include/features.h:213: note: this is the location of the previous
> definition
> C py/3rd-party/pygts-0.3.1/segment.c
> In file included from /usr/include/python2.6/Python.h:8,
> from py/3rd-party/pygts-0.3.1/pygts.h:39,
> from py/3rd-party/pygts-0.3.1/segment.c:28:
> /usr/include/python2.6/pyconfig.h:1031: warning: "_POSIX_C_SOURCE"
> redefined
> /usr/include/features.h:213: note: this is the location of the previous
> definition
> C py/3rd-party/pygts-0.3.1/surface.c
> In file included from /usr/include/python2.6/Python.h:8,
> from py/3rd-party/pygts-0.3.1/pygts.h:39,
> from py/3rd-party/pygts-0.3.1/surface.c:28:
> /usr/include/python2.6/pyconfig.h:1031: warning: "_POSIX_C_SOURCE"
> redefined
> /usr/include/features.h:213: note: this is the location of the previous
> definition
> C py/3rd-party/pygts-0.3.1/triangle.c
> In file included from /usr/include/python2.6/Python.h:8,
> from py/3rd-party/pygts-0.3.1/pygts.h:39,
> from py/3rd-party/pygts-0.3.1/triangle.c:28:
> /usr/include/python2.6/pyconfig.h:1031: warning: "_POSIX_C_SOURCE"
> redefined
> /usr/include/features.h:213: note: this is the location of the previous
> definition
> C py/3rd-party/pygts-0.3.1/vertex.c
> In file included from /usr/include/python2.6/Python.h:8,
> from py/3rd-party/pygts-0.3.1/pygts.h:39,
> from py/3rd-party/pygts-0.3.1/vertex.c:28:
> /usr/include/python2.6/pyconfig.h:1031: warning: "_POSIX_C_SOURCE"
> redefined
> /usr/include/features.h:213: note: this is the location of the previous
> definition
> > /home/dmaionchi/build-bzr2880/lib/yade-support.cpp
> C /home/dmaionchi/build-bzr2880/lib/yade-support.cpp
> In file included from
> /usr/include/boost/python/object/function_handle.hpp:10,
> from
> /usr/include/boost/python/converter/arg_to_python.hpp:19,
> from /usr/include/boost/python/call.hpp:15,
> from /usr/include/boost/python/object_core.hpp:12,
> from /usr/include/boost/python/args.hpp:25,
> from /usr/include/boost/python.hpp:11,
> from
> /home/dmaionchi/yade/lib/serialization/Serializable.hpp:23,
> from
> /home/dmaionchi/yade/lib/serialization/Serializable.cpp:11,
> from /home/dmaionchi/build-bzr2880/lib/yade-support.cpp:5:
> /home/dmaionchi/yade/lib/serialization/Serializable.hpp: In member function
> 'PyObject*
> boost::python::objects::caller_py_function_impl<Caller>::operator()(PyObject*,
> PyObject*) [with Caller = boost::python::detail::caller<PyObject*
> (*)(Serializable&, const Serializable&),
> boost::python::default_call_policies, boost::mpl::vector3<PyObject*,
> Serializable&, const Serializable&> >]':
> /home/dmaionchi/yade/lib/serialization/Serializable.hpp:262: warning:
> dereferencing pointer 'p.2704' does break strict-aliasing rules
> /usr/include/boost/python/detail/destroy.hpp:90: note: initialized from
> here
> /home/dmaionchi/build-bzr2880/include/yade/lib/factory/Factorable.hpp:63:
> warning: dereferencing pointer 'this.691' does break strict-aliasing rules
> /home/dmaionchi/yade/lib/serialization/Serializable.hpp:262: note:
> initialized from here
> /home/dmaionchi/yade/lib/serialization/Serializable.hpp:262: warning:
> dereferencing pointer 'p.2704' does break strict-aliasing rules
> /usr/include/boost/python/detail/destroy.hpp:90: note: initialized from
> here
> /home/dmaionchi/build-bzr2880/include/yade/lib/factory/Factorable.hpp:63:
> warning: dereferencing pointer 'this.691' does break strict-aliasing rules
> /home/dmaionchi/yade/lib/serialization/Serializable.hpp:262: note:
> initialized from here
> L libyade-support.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/lib/libyade-support.so
> L _gts.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/gts/_gts.so
> ln -s -f ../py/gts/_gts.so
> /home/dmaionchi/YADE/lib/yade-bzr2880/lib/lib_gts__python-module.so
> > /home/dmaionchi/build-bzr2880/core/core.cpp
> C /home/dmaionchi/build-bzr2880/core/core.cpp
> L libcore.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/lib/libcore.so
> C pkg/common/Aabb.cpp
> L libAabb.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libAabb.so
> C pkg/common/Bo1_Box_Aabb.cpp
> C pkg/common/Box.cpp
> L libBox.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libBox.so
> C pkg/common/Dispatching.cpp
> C pkg/common/VelocityBins.cpp
> L libVelocityBins.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libVelocityBins.so
> L libDispatching.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libDispatching.so
> L libBo1_Box_Aabb.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libBo1_Box_Aabb.so
> C pkg/common/Bo1_Facet_Aabb.cpp
> C pkg/common/Facet.cpp
> L libFacet.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libFacet.so
> L libBo1_Facet_Aabb.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libBo1_Facet_Aabb.so
> C pkg/common/Bo1_Sphere_Aabb.cpp
> C pkg/common/Sphere.cpp
> L libSphere.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libSphere.so
> L libBo1_Sphere_Aabb.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libBo1_Sphere_Aabb.so
> C pkg/common/BoundaryController.cpp
> L libBoundaryController.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libBoundaryController.so
> C pkg/common/Callbacks.cpp
> L libCallbacks.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCallbacks.so
> C pkg/dem/CapillaryPhys.cpp
> C pkg/dem/FrictPhys.cpp
> C pkg/common/NormShearPhys.cpp
> L libNormShearPhys.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libNormShearPhys.so
> L libFrictPhys.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libFrictPhys.so
> L libCapillaryPhys.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCapillaryPhys.so
> C pkg/dem/CapillaryStressRecorder.cpp
> C pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp
> C pkg/common/ElastMat.cpp
> L libElastMat.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libElastMat.so
> C pkg/dem/ScGeom.cpp
> C pkg/dem/DemXDofGeom.cpp
> L libDemXDofGeom.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libDemXDofGeom.so
> L libScGeom.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libScGeom.so
> L libLaw2_ScGeom_CapillaryPhys_Capillarity.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libLaw2_ScGeom_CapillaryPhys_Capillarity.so
> C pkg/dem/TriaxialCompressionEngine.cpp
> C pkg/dem/Shop.cpp
> C pkg/dem/Tetra.cpp
> L libTetra.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libTetra.so
> C pkg/dem/ViscoelasticPM.cpp
> L libViscoelasticPM.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libViscoelasticPM.so
> C pkg/common/Gl1_NormPhys.cpp
> C pkg/common/GLDrawFunctors.cpp
> L libGLDrawFunctors.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libGLDrawFunctors.so
> C pkg/common/OpenGLRenderer.cpp
> L libOpenGLRenderer.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libOpenGLRenderer.so
> C pkg/common/MatchMaker.cpp
> L libMatchMaker.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libMatchMaker.so
> C pkg/common/InsertionSortCollider.cpp
> C pkg/common/Collider.cpp
> L libCollider.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCollider.so
> C pkg/dem/NewtonIntegrator.cpp
> ^FompC pkg/dem/Clump.cpp
> L libClump.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libClump.so
> L libNewtonIntegrator.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libNewtonIntegrator.so
> L libInsertionSortCollider.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libInsertionSortCollider.so
> C pkg/dem/Ig2_Sphere_Sphere_ScGeom.cpp
> L libIg2_Sphere_Sphere_ScGeom.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libIg2_Sphere_Sphere_ScGeom.so
> C pkg/common/GravityEngines.cpp
> C pkg/common/FieldApplier.cpp
> L libFieldApplier.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libFieldApplier.so
> C pkg/common/PeriodicEngines.cpp
> L libPeriodicEngines.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libPeriodicEngines.so
> L libGravityEngines.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libGravityEngines.so
> C pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.cpp
> L libIp2_FrictMat_FrictMat_FrictPhys.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libIp2_FrictMat_FrictMat_FrictPhys.so
> C pkg/dem/GlobalStiffnessTimeStepper.cpp
> L libGlobalStiffnessTimeStepper.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libGlobalStiffnessTimeStepper.so
> C pkg/common/InteractionLoop.cpp
> L libInteractionLoop.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libInteractionLoop.so
> C pkg/dem/ElasticContactLaw.cpp
> L libElasticContactLaw.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libElasticContactLaw.so
> C pkg/dem/Ig2_Box_Sphere_ScGeom.cpp
> L libIg2_Box_Sphere_ScGeom.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libIg2_Box_Sphere_ScGeom.so
> C pkg/common/ForceResetter.cpp
> L libForceResetter.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libForceResetter.so
> C pkg/dem/TriaxialStressController.cpp
> C pkg/common/Recorder.cpp
> L libRecorder.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libRecorder.so
> C pkg/dem/CapillaryTriaxialTest.cpp
> C pkg/dem/Ip2_FrictMat_FrictMat_CapillaryPhys.cpp
> L libIp2_FrictMat_FrictMat_CapillaryPhys.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libIp2_FrictMat_FrictMat_CapillaryPhys.so
> C pkg/dem/TriaxialStateRecorder.cpp
> C pkg/dem/CohFrictMat.cpp
> L libCohFrictMat.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCohFrictMat.so
> C pkg/dem/CohFrictPhys.cpp
> L libCohFrictPhys.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCohFrictPhys.so
> C pkg/dem/CohesionlessMomentRotation.cpp
> L libCohesionlessMomentRotation.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCohesionlessMomentRotation.so
> C pkg/dem/CohesiveFrictionalContactLaw.cpp
> L libCohesiveFrictionalContactLaw.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCohesiveFrictionalContactLaw.so
> C pkg/dem/CohesiveFrictionalPM.cpp
> L libCohesiveFrictionalPM.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCohesiveFrictionalPM.so
> C pkg/dem/CohesiveStateRPMRecorder.cpp
> C pkg/dem/RockPM.cpp
> C pkg/dem/CohesiveTriaxialTest.cpp
> C pkg/dem/Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.cpp
> L libIp2_CohFrictMat_CohFrictMat_CohFrictPhys.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libIp2_CohFrictMat_CohFrictMat_CohFrictPhys.so
> C pkg/dem/ConcretePM.cpp
> C pkg/dem/CundallStrack.cpp
> L libCundallStrack.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCundallStrack.so
> C pkg/common/Cylinder.cpp
> L libCylinder.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCylinder.so
> C pkg/dem/Dem3DofGeom_FacetSphere.cpp
> C pkg/dem/Dem3DofGeom_SphereSphere.cpp
> L libDem3DofGeom_SphereSphere.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libDem3DofGeom_SphereSphere.so
> L libDem3DofGeom_FacetSphere.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libDem3DofGeom_FacetSphere.so
> C pkg/dem/Dem3DofGeom_WallSphere.cpp
> C pkg/common/Wall.cpp
> L libWall.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libWall.so
> L libDem3DofGeom_WallSphere.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libDem3DofGeom_WallSphere.so
> C pkg/dem/Disp2DPropLoadEngine.cpp
> L libDisp2DPropLoadEngine.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libDisp2DPropLoadEngine.so
> C pkg/dem/DomainLimiter.cpp
> pkg/dem/DomainLimiter.cpp: In member function 'virtual void
> LawTester::action()':
> pkg/dem/DomainLimiter.cpp:218: warning: comparison between signed and
> unsigned integer expressions
> C pkg/dem/L3Geom.cpp
> L libL3Geom.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libL3Geom.so
> C pkg/dem/FacetTopologyAnalyzer.cpp
> L libFacetTopologyAnalyzer.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libFacetTopologyAnalyzer.so
> C pkg/dem/FlatGridCollider.cpp
> L libFlatGridCollider.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libFlatGridCollider.so
> C pkg/dem/FlowEngine.cpp
> L libFlowEngine.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libFlowEngine.so
> C pkg/common/ForceEngine.cpp
> C pkg/dem/ForceTorqueRecorder.cpp
> ^FL libForceTorqueRecorder.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libForceTorqueRecorder.so
> C pkg/common/Gl1_Aabb.cpp
> L libGl1_Aabb.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libGl1_Aabb.so
> C pkg/common/Gl1_Box.cpp
> L libGl1_Box.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libGl1_Box.so
> C pkg/common/Gl1_Facet.cpp
> L libGl1_Facet.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libGl1_Facet.so
> C pkg/common/Gl1_Sphere.cpp
> L libGl1_Sphere.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libGl1_Sphere.so
> C pkg/dem/HertzMindlin.cpp
> In file included from
> /usr/include/boost/python/object/function_handle.hpp:10,
> from
> /usr/include/boost/python/converter/arg_to_python.hpp:19,
> from /usr/include/boost/python/call.hpp:15,
> from /usr/include/boost/python/object_core.hpp:12,
> from /usr/include/boost/python/args.hpp:25,
> from /usr/include/boost/python.hpp:11,
> from
> /home/dmaionchi/build-bzr2880/include/yade/lib/serialization/Serializable.hpp:23,
> from
> /home/dmaionchi/build-bzr2880/include/yade/core/IPhys.hpp:12,
> from
> /home/dmaionchi/build-bzr2880/include/yade/pkg/common/NormShearPhys.hpp:5,
> from
> /home/dmaionchi/build-bzr2880/include/yade/pkg/dem/FrictPhys.hpp:10,
> from pkg/dem/HertzMindlin.hpp:13,
> from pkg/dem/HertzMindlin.cpp:4:
> /home/dmaionchi/build-bzr2880/include/yade/lib/base/openmp-accu.hpp: In
> member function 'PyObject*
> boost::python::objects::caller_py_function_impl<Caller>::operator()(PyObject*,
> PyObject*) [with Caller =
> boost::python::detail::caller<boost::python::detail::member<OpenMPAccumulator<double>,
> Law2_ScGeom_MindlinPhys_Mindlin>, boost::python::default_call_policies,
> boost::mpl::vector3<void, Law2_ScGeom_MindlinPhys_Mindlin&, const
> OpenMPAccumulator<double>&> >]':
> /home/dmaionchi/build-bzr2880/include/yade/lib/base/openmp-accu.hpp:100:
> warning: dereferencing pointer 'p.14309' does break strict-aliasing rules
> /usr/include/boost/python/detail/destroy.hpp:90: note: initialized from
> here
> /home/dmaionchi/build-bzr2880/include/yade/lib/base/openmp-accu.hpp:100:
> warning: dereferencing pointer 'p.14309' does break strict-aliasing rules
> /usr/include/boost/python/detail/destroy.hpp:90: note: initialized from
> here
> /home/dmaionchi/build-bzr2880/include/yade/lib/base/openmp-accu.hpp: In
> member function 'PyObject*
> boost::python::objects::caller_py_function_impl<Caller>::operator()(PyObject*,
> PyObject*) [with Caller =
> boost::python::detail::caller<boost::python::detail::member<OpenMPAccumulator<double>,
> Law2_ScGeom_MindlinPhys_Mindlin>,
> boost::python::return_value_policy<boost::python::return_by_value,
> boost::python::default_call_policies>, boost::mpl::vector3<void,
> Law2_ScGeom_MindlinPhys_Mindlin&, const OpenMPAccumulator<double>&> >]':
> /home/dmaionchi/build-bzr2880/include/yade/lib/base/openmp-accu.hpp:100:
> warning: dereferencing pointer 'p.14309' does break strict-aliasing rules
> /usr/include/boost/python/detail/destroy.hpp:90: note: initialized from
> here
> /home/dmaionchi/build-bzr2880/include/yade/lib/base/openmp-accu.hpp:100:
> warning: dereferencing pointer 'p.14309' does break strict-aliasing rules
> /usr/include/boost/python/detail/destroy.hpp:90: note: initialized from
> here
> /home/dmaionchi/build-bzr2880/include/yade/lib/base/openmp-accu.hpp: In
> member function 'PyObject*
> boost::python::objects::caller_py_function_impl<Caller>::operator()(PyObject*,
> PyObject*) [with Caller = boost::python::detail::caller<void
> (*)(Law2_ScGeom_MindlinPhys_Mindlin&, const OpenMPAccumulator<double>&),
> boost::python::default_call_policies, boost::mpl::vector3<void,
> Law2_ScGeom_MindlinPhys_Mindlin&, const OpenMPAccumulator<double>&> >]':
> /home/dmaionchi/build-bzr2880/include/yade/lib/base/openmp-accu.hpp:100:
> warning: dereferencing pointer 'p.14309' does break strict-aliasing rules
> /usr/include/boost/python/detail/destroy.hpp:90: note: initialized from
> here
> /home/dmaionchi/build-bzr2880/include/yade/lib/base/openmp-accu.hpp:100:
> warning: dereferencing pointer 'p.14309' does break strict-aliasing rules
> /usr/include/boost/python/detail/destroy.hpp:90: note: initialized from
> here
> L libHertzMindlin.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libHertzMindlin.so
> C pkg/dem/Ig2_Facet_Sphere_ScGeom.cpp
> L libIg2_Facet_Sphere_ScGeom.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libIg2_Facet_Sphere_ScGeom.so
> C pkg/dem/Ip2_2xNormalInelasticMat_NormalInelasticityPhys.cpp
> C pkg/dem/NormalInelasticityPhys.cpp
> L libNormalInelasticityPhys.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libNormalInelasticityPhys.so
> C pkg/dem/NormalInelasticMat.cpp
> L libNormalInelasticMat.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libNormalInelasticMat.so
> L libIp2_2xNormalInelasticMat_NormalInelasticityPhys.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libIp2_2xNormalInelasticMat_NormalInelasticityPhys.so
> C pkg/dem/KinemCNDEngine.cpp
> C pkg/dem/KinemSimpleShearBox.cpp
> L libKinemSimpleShearBox.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libKinemSimpleShearBox.so
> L libKinemCNDEngine.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libKinemCNDEngine.so
> C pkg/dem/KinemCNLEngine.cpp
> L libKinemCNLEngine.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libKinemCNLEngine.so
> C pkg/dem/KinemCNSEngine.cpp
> L libKinemCNSEngine.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libKinemCNSEngine.so
> C pkg/dem/KinemCTDEngine.cpp
> L libKinemCTDEngine.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libKinemCTDEngine.so
> C pkg/common/KinematicEngines.cpp
> C pkg/dem/MicroMacroAnalyser.cpp
> L libMicroMacroAnalyser.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libMicroMacroAnalyser.so
> C pkg/dem/NormalInelasticityLaw.cpp
> L libNormalInelasticityLaw.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libNormalInelasticityLaw.so
> C pkg/common/ParallelEngine.cpp
> L libParallelEngine.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libParallelEngine.so
> C pkg/dem/ParticleSizeDistrbutionRPMRecorder.cpp
> C pkg/dem/PeriIsoCompressor.cpp
> C pkg/common/PersistentTriangulationCollider.cpp
> L libPersistentTriangulationCollider.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libPersistentTriangulationCollider.so
> C pkg/common/PyRunner.cpp
> L libPyRunner.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libPyRunner.so
> C pkg/common/ResetRandomPosition.cpp
> L libResetRandomPosition.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libResetRandomPosition.so
> C pkg/dem/STLImporter.cpp
> C pkg/dem/SampleCapillaryPressureEngine.cpp
> C pkg/dem/SimpleShear.cpp
> L libSimpleShear.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libSimpleShear.so
> C pkg/common/SpatialQuickSortCollider.cpp
> L libSpatialQuickSortCollider.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libSpatialQuickSortCollider.so
> C pkg/dem/SpherePack.cpp
> /usr/include/eigen2/Eigen/src/Core/MathFunctions.h: In member function
> 'long int SpherePack::particleSD_2d(Vector2r, Vector2r, Real, bool,
> std::string, int, const std::vector<double, std::allocator<double> >&, const
> std::vector<double, std::allocator<double> >&, bool, int)':
> /usr/include/eigen2/Eigen/src/Core/MathFunctions.h:137: warning:
> 'dr.Eigen::Matrix<double, 3, 1, 2, 3,
> 1>::m_storage.Eigen::ei_matrix_storage<double, 3, 3, 1,
> 2>::m_data.Eigen::ei_matrix_array<double, 3, 2, false>::array[2ul]' may be
> used uninitialized in this function
> pkg/dem/SpherePack.cpp:392: note: 'dr.Eigen::Matrix<double, 3, 1, 2, 3,
> 1>::m_storage.Eigen::ei_matrix_storage<double, 3, 3, 1,
> 2>::m_data.Eigen::ei_matrix_array<double, 3, 2, false>::array[2ul]' was
> declared here
> C pkg/dem/SpheresFactory.cpp
> L libSpheresFactory.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libSpheresFactory.so
> C pkg/common/StepDisplacer.cpp
> L libStepDisplacer.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libStepDisplacer.so
> C pkg/common/SubdomainBalancer.cpp
> L libSubdomainBalancer.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libSubdomainBalancer.so
> C pkg/dem/TesselationWrapper.cpp
> L libTesselationWrapper.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libTesselationWrapper.so
> C pkg/dem/ThreeDTriaxialEngine.cpp
> C pkg/common/TorqueEngine.cpp
> L libTorqueEngine.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libTorqueEngine.so
> C pkg/dem/TriaxialTest.cpp
> C pkg/dem/UnbalancedForceCallbacks.cpp
> L libUnbalancedForceCallbacks.so
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libUnbalancedForceCallbacks.so
> C pkg/dem/UniaxialStrainer.cpp
> C pkg/dem/VTKRecorder.cpp
> In file included from /usr/include/c++/4.4/backward/strstream:47,
> from /usr/include/vtk-5.4/vtkIOStream.h:112,
> from /usr/include/vtk-5.4/vtkSystemIncludes.h:40,
> from /usr/include/vtk-5.4/vtkIndent.h:24,
> from /usr/include/vtk-5.4/vtkObjectBase.h:43,
> from /usr/include/vtk-5.4/vtkObject.h:41,
> from /usr/include/vtk-5.4/vtkCellArray.h:35,
> from pkg/dem/VTKRecorder.cpp:7:
> /usr/include/c++/4.4/backward/backward_warning.h:28: warning: #warning This
> file includes at least one deprecated or antiquated header which may be
> removed without further notice at a future date. Please use a non-deprecated
> interface with equivalent functionality instead. For a listing of
> replacement headers and interfaces, consult the file backward_warning.h. To
> disable this warning use -Wno-deprecated.
> C pkg/dem/WirePM.cpp
> L libWirePM.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libWirePM.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/gts/__init__.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/gts/pygts.py
> C py/mathWrap/miniEigen.cpp
> L miniEigen.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/miniEigen.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/mtTkinter.py
> C py/WeightedAverage2d.cpp
> L WeightedAverage2d.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/WeightedAverage2d.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/__init__.py
> C py/wrapper/customConverters.cpp
> L _customConverters.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/_customConverters.so
> C py/_eudoxos.cpp
> In file included from /usr/include/c++/4.4/backward/strstream:47,
> from /usr/include/vtk-5.4/vtkIOStream.h:112,
> from /usr/include/vtk-5.4/vtkSystemIncludes.h:40,
> from /usr/include/vtk-5.4/vtkIndent.h:24,
> from /usr/include/vtk-5.4/vtkObjectBase.h:43,
> from /usr/include/vtk-5.4/vtkObject.h:41,
> from /usr/include/vtk-5.4/vtkLocator.h:53,
> from /usr/include/vtk-5.4/vtkAbstractPointLocator.h:27,
> from /usr/include/vtk-5.4/vtkPointLocator.h:39,
> from py/_eudoxos.cpp:13:
> /usr/include/c++/4.4/backward/backward_warning.h:28: warning: #warning This
> file includes at least one deprecated or antiquated header which may be
> removed without further notice at a future date. Please use a non-deprecated
> interface with equivalent functionality instead. For a listing of
> replacement headers and interfaces, consult the file backward_warning.h. To
> disable this warning use -Wno-deprecated.
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/_extraDocs.py
> C py/pack/_packObb.cpp
> L _packObb.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/_packObb.so
> C py/pack/_packPredicates.cpp
> L _packPredicates.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/_packPredicates.so
> C py/pack/_packSpheres.cpp
> C py/_utils.cpp
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/bodiesHandling.py
> C core/main/pyboot.cpp
> L boot.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/boot.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/config.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/eudoxos.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/export.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/geom.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/linterpolation.py
> C py/log.cpp
> L log.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/log.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/manpage.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/pack.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/params.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/plot.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/post2d.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/qt/Inspector.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/qt/SerializableEditor.py
> C gui/qt4/GLViewer.cpp
> C gui/qt4/OpenGLManager.cpp
> C gui/qt4/_GLViewer.cpp
> /usr/share/qt4/bin/moc -DQT_GUI_LIB -DQT_CORE_LIB -DQT_XML_LIB
> -DQT_OPENGL_LIB -DQT_SHARED -DPYGTS_HAS_NUMPY -DYADE_GTS -DYADE_LOG4CXX
> -DYADE_OPENGL -DYADE_OPENMP -DYADE_QT4 -DYADE_VTK -DYADE_OPENMP
> -DYADE_CAST=static_cast -DYADE_PTR_CAST=static_pointer_cast -DNDEBUG
> -I/usr/include/vtk-5.0 -I/usr/include/vtk-5.2 -I/usr/include/vtk-5.4
> -I/usr/include/vtk-5.6 -I/usr/include/vtk -I/usr/include/eigen2
> -I/home/dmaionchi/build-bzr2880/include -Iinclude -I/usr/include/python2.6
> -I/usr/include/qt4 -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtCore
> -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtOpenGL -o
> /home/dmaionchi/build-bzr2880/gui/qt4/moc_GLViewer.cc gui/qt4/GLViewer.hpp
> C /home/dmaionchi/build-bzr2880/gui/qt4/moc_GLViewer.cc
> /usr/share/qt4/bin/moc -DQT_GUI_LIB -DQT_CORE_LIB -DQT_XML_LIB
> -DQT_OPENGL_LIB -DQT_SHARED -DPYGTS_HAS_NUMPY -DYADE_GTS -DYADE_LOG4CXX
> -DYADE_OPENGL -DYADE_OPENMP -DYADE_QT4 -DYADE_VTK -DYADE_OPENMP
> -DYADE_CAST=static_cast -DYADE_PTR_CAST=static_pointer_cast -DNDEBUG
> -I/usr/include/vtk-5.0 -I/usr/include/vtk-5.2 -I/usr/include/vtk-5.4
> -I/usr/include/vtk-5.6 -I/usr/include/vtk -I/usr/include/eigen2
> -I/home/dmaionchi/build-bzr2880/include -Iinclude -I/usr/include/python2.6
> -I/usr/include/qt4 -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtCore
> -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtOpenGL -o
> /home/dmaionchi/build-bzr2880/gui/qt4/moc_OpenGLManager.cc
> gui/qt4/OpenGLManager.hpp
> C /home/dmaionchi/build-bzr2880/gui/qt4/moc_OpenGLManager.cc
> L _GLViewer.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/qt/_GLViewer.so
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/qt/__init__.py
> pyrcc4 -o /home/dmaionchi/build-bzr2880/gui/qt4/img_rc.py gui/qt4/img.qrc
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/qt/img_rc.py
> pyuic4 -o /home/dmaionchi/build-bzr2880/gui/qt4/ui_controller.py
> gui/qt4/controller.ui
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/qt/ui_controller.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/remote.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/runtime.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/system.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/__init__.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/checkList.py
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/checkTestDummy.py
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/checkTestNormalInelasticity.py
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/checkTestTriax.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/checkWeight.py
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/data/WallStressesCheckTest
> >
> /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/checks/data/checkTestTriax.spheres
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/clump.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/cohesive-chain.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/core.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/engines.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/pbc.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/tests/wrapper.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/timing.py
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/utils.py
> C py/wrapper/yadeWrapper.cpp
> > /home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/ymport.py
> scons: done building targets.
>
> scons: *** Found dependency cycle(s):
> Internal Error: no cycle found for node
> /home/dmaionchi/build-bzr2880/libTriaxialCompressionEngine.so
> (<SCons.Node.FS.File object at 0x5111b50>) in state pending
> /home/dmaionchi/build-bzr2880/libGl1_NormPhys.so ->
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libGl1_NormPhys.so ->
> /home/dmaionchi/build-bzr2880/libShop.so ->
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libShop.so ->
> /home/dmaionchi/build-bzr2880/libGl1_NormPhys.so
> Internal Error: no cycle found for node
> /home/dmaionchi/YADE/lib/yade-bzr2880/py (<SCons.Node.FS.Dir object at
> 0x5a607d0>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins (<SCons.Node.FS.Dir object at
> 0x295cc10>) in state pending
> /home/dmaionchi/build-bzr2880/libShop.so ->
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libShop.so ->
> /home/dmaionchi/build-bzr2880/libGl1_NormPhys.so ->
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libGl1_NormPhys.so ->
> /home/dmaionchi/build-bzr2880/libShop.so
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libShop.so ->
> /home/dmaionchi/build-bzr2880/libGl1_NormPhys.so ->
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libGl1_NormPhys.so ->
> /home/dmaionchi/build-bzr2880/libShop.so ->
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libShop.so
> Internal Error: no cycle found for node
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libTriaxialCompressionEngine.so
> (<SCons.Node.FS.File object at 0x5127690>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/build-bzr2880/libRockPM.so (<SCons.Node.FS.File object at
> 0x3c74990>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libSpherePack.so
> (<SCons.Node.FS.File object at 0x5297f50>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libTriaxialStressController.so
> (<SCons.Node.FS.File object at 0x4c835d0>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libSTLImporter.so
> (<SCons.Node.FS.File object at 0x4d63950>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libRockPM.so
> (<SCons.Node.FS.File object at 0x3e96e50>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libConcretePM.so
> (<SCons.Node.FS.File object at 0x5074e50>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/build-bzr2880/libTriaxialStressController.so
> (<SCons.Node.FS.File object at 0x4befa90>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/build-bzr2880/libTriaxialStateRecorder.so
> (<SCons.Node.FS.File object at 0x569f350>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libCapillaryStressRecorder.so
> (<SCons.Node.FS.File object at 0x4bef690>) in state pending
> Internal Error: no cycle found for node
> /home/dmaionchi/YADE/lib/yade-bzr2880/plugins/libTriaxialStateRecorder.so
> (<SCons.Node.FS.File object at 0x5737290>) in state pending
>
> File "/usr/lib/scons/SCons/Taskmaster.py", line 1011, in cleanup
>
>
> --
> You received this question notification because you are a member of
> yade-users, which is an answer contact for Yade.
>
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Hi Chiara,
The compilation worked using chunkSize=2.C, as you can see below.
...
gui/qt4/GLViewer.cpp
C gui/qt4/OpenGLManager.cpp
C gui/qt4/_GLViewer.cpp
/usr/share/qt4/bin/moc -DQT_GUI_LIB -DQT_CORE_LIB -DQT_XML_LIB -DQT_OPENGL_LIB -DQT_SHARED -DPYGTS_HAS_NUMPY -DYADE_GTS -DYADE_LOG4CXX -DYADE_OPENGL -DYADE_OPENMP -DYADE_QT4 -DYADE_VTK -DYADE_DEBUG -DYADE_OPENMP -DYADE_CAST=dynamic_cast -DYADE_PTR_CAST=dynamic_pointer_cast -I/usr/include/vtk-5.0 -I/usr/include/vtk-5.2 -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/vtk -I/usr/include/eigen2 -I/home/dmaionchi/build-bzr2880/dbg/include -Iinclude -I/usr/include/python2.6 -I/usr/include/qt4 -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtOpenGL -o /home/dmaionchi/build-bzr2880/dbg/gui/qt4/moc_GLViewer.cc gui/qt4/GLViewer.hpp
C /home/dmaionchi/build-bzr2880/dbg/gui/qt4/moc_GLViewer.cc
/usr/share/qt4/bin/moc -DQT_GUI_LIB -DQT_CORE_LIB -DQT_XML_LIB -DQT_OPENGL_LIB -DQT_SHARED -DPYGTS_HAS_NUMPY -DYADE_GTS -DYADE_LOG4CXX -DYADE_OPENGL -DYADE_OPENMP -DYADE_QT4 -DYADE_VTK -DYADE_DEBUG -DYADE_OPENMP -DYADE_CAST=dynamic_cast -DYADE_PTR_CAST=dynamic_pointer_cast -I/usr/include/vtk-5.0 -I/usr/include/vtk-5.2 -I/usr/include/vtk-5.4 -I/usr/include/vtk-5.6 -I/usr/include/vtk -I/usr/include/eigen2 -I/home/dmaionchi/build-bzr2880/dbg/include -Iinclude -I/usr/include/python2.6 -I/usr/include/qt4 -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtOpenGL -o /home/dmaionchi/build-bzr2880/dbg/gui/qt4/moc_OpenGLManager.cc gui/qt4/OpenGLManager.hpp
C /home/dmaionchi/build-bzr2880/dbg/gui/qt4/moc_OpenGLManager.cc
L _GLViewer.so
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/qt/_GLViewer.so
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/qt/__init__.py
pyrcc4 -o /home/dmaionchi/build-bzr2880/dbg/gui/qt4/img_rc.py gui/qt4/img.qrc
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/qt/img_rc.py
pyuic4 -o /home/dmaionchi/build-bzr2880/dbg/gui/qt4/ui_controller.py gui/qt4/controller.ui
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/qt/ui_controller.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/remote.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/runtime.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/system.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/__init__.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/checks/checkList.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/checks/checkTestDummy.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/checks/checkTestNormalInelasticity.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/checks/checkTestTriax.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/checks/checkWeight.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/checks/data/WallStressesCheckTest
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/checks/data/checkTestTriax.spheres
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/clump.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/cohesive-chain.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/core.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/engines.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/pbc.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/tests/wrapper.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/timing.py
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/utils.py
C py/wrapper/yadeWrapper.cpp
L wrapper.so
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/wrapper.so
> /home/dmaionchi/YADE/lib/yade-bzr2880/dbg/py/yade/ymport.py
scons: done building targets.

But when I try to start Yade, ~/YADE/bin$ ./yade-bzr2880, then I obtain this error:

Welcome to Yade bzr2880
Traceback (most recent call last):
  File "./yade-bzr2880", line 118, in <module>
    import yade
  File "/home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/__init__.py", line 59, in <module>
    boot.initialize(plugins,config.confDir)
ImportError: No module named wrapper

Any idea why?

Try to install yade from daily-packages:

sudo add-apt-repository ppa:yade-pkg/snapshots; sudo apt-get update;
sudo apt-get install yade-daily*

After that you can start yade just by typing:
yade-daily

Anton

Hi Anton,
before I try what you suggest, I want to say that I compiled using chunkSize=2 (with no erros) and then I started using ./yade-bzr2880 --debug --rebuild and it worked. But now when I just start with ./yade-bzr2880 I receive the same error:
Welcome to Yade bzr2880
Traceback (most recent call last):
  File "./yade-bzr2880", line 118, in <module>
    import yade
  File "/home/dmaionchi/YADE/lib/yade-bzr2880/py/yade/__init__.py", line 59, in <module>
    boot.initialize(plugins,config.confDir)
ImportError: No module named wrapper
Do you have suggestions to solve that, instead of trying to install another package?
Thanks, Daniela

Hi Anton, I tried using yade-daily and it seems to work.
Another question: is it possible to run the simulation parallel using this software?
Thanks again, Daniela

Perhaps, you compiled yade in debug-mode.
Try to start it with:
./yade-bzr2880 --debug

Anton

Yes! Now it is working. Thanks.
Which one would you suggest me to use? yade-bzr2880 or yade-daily?

Thanks Anton Gladky, that solved my question.