Ubuntu
mira package

mira 4.9.6-9 source package in Ubuntu

Changelog

mira (4.9.6-9) unstable; urgency=medium

  * Team Upload.
  * Make package cross-build
    + Drop un-needed B-D on perl
    + Pass boost include dir and libdir for easy cross-compilation
  * Add override for README.html, source is present
    in the source package.
  * Set SOURCE_DATE_EPOCH, ISDEBIAN and DEBIAN_MAINTAINER
    to get debian-specific repro builds working.
  * Add patch to:
    + Fix upstream mistake, actually echo DEBIAN_MAINTAINER name
    + convert source-date-epoch to actual date to put into compileinfo

 -- Nilesh Patra <email address hidden>  Sun, 18 Jun 2023 17:56:43 +0530

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
mira_4.9.6-9.dsc 1.8 KiB 4f57cd1c292cf3e8c735b9d586dd669836af9a70a9b19b1f20e71f0b674afb25
mira_4.9.6.orig.tar.bz2 14.3 MiB e910479bc5f3f205913ac81cd2a24449cc175a6d1ae1fe3ae33ea0e100435b16
mira_4.9.6-9.debian.tar.xz 33.8 KiB b7529b2a9824d1b5e7cb38a64c95c842f3260360d5cd408cd49e95ed4016b178

Available diffs

No changes file available.

Binary packages built by this source

mira-assembler: Whole Genome Shotgun and EST Sequence Assembler

 The mira genome fragment assembler is a specialised assembler for
 sequencing projects classified as 'hard' due to high number of similar
 repeats. For expressed sequence tags (ESTs) transcripts, miraEST is
 specialised on reconstructing pristine mRNA transcripts while
 detecting and classifying single nucleotide polymorphisms (SNP)
 occurring in different variations thereof.
 .
 The assembler is routinely used for such various tasks as mutation
 detection in different cell types, similarity analysis of transcripts
 between organisms, and pristine assembly of sequences from various
 sources for oligo design in clinical microarray experiments.
 .
 The package provides the following executables:
 Binaries provided:
  * mira: for assembly of genome sequences
  * miramem: estimating memory needed to assemble projects.
  * mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
  * miraconvert: is a tool to convert, extract and sometimes recalculate all
    kinds of data related to sequence assembly files.

mira-assembler-dbgsym: debug symbols for mira-assembler
mira-doc: documentation for the mira assembler

 The mira genome fragment assembler is a specialised assembler for
 sequencing projects classified as 'hard' due to high number of similar
 repeats.
 .
 This package contains an HTML book introducing to mira.

mira-rfam-12s-rrna: extract of RFAM 12 rRNA database

 The mira genome fragment assembler is a specialised assembler for
 sequencing projects classified as 'hard' due to high number of similar
 repeats.
 .
 This package contains data to enable MIRA and MIRABAIT to search for rRNA and
 rDNA. This data set contains an excerpt of the RFAM database.