Binary package “mira-assembler” in ubuntu mantic
Whole Genome Shotgun and EST Sequence Assembler
The mira genome fragment assembler is a specialised assembler for
sequencing projects classified as 'hard' due to high number of similar
repeats. For expressed sequence tags (ESTs) transcripts, miraEST is
specialised on reconstructing pristine mRNA transcripts while
detecting and classifying single nucleotide polymorphisms (SNP)
occurring in different variations thereof.
.
The assembler is routinely used for such various tasks as mutation
detection in different cell types, similarity analysis of transcripts
between organisms, and pristine assembly of sequences from various
sources for oligo design in clinical microarray experiments.
.
The package provides the following executables:
Binaries provided:
* mira: for assembly of genome sequences
* miramem: estimating memory needed to assemble projects.
* mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
* miraconvert: is a tool to convert, extract and sometimes recalculate all
kinds of data related to sequence assembly files.
Source package
Published versions
- mira-assembler 4.9.6-7build1 in amd64 (Release)
- mira-assembler 4.9.6-10 in amd64 (Proposed)
- mira-assembler 4.9.6-10 in amd64 (Release)
- mira-assembler 4.9.6-7build1 in arm64 (Release)
- mira-assembler 4.9.6-10 in arm64 (Proposed)
- mira-assembler 4.9.6-10 in arm64 (Release)
- mira-assembler 4.9.6-7build1 in armhf (Release)
- mira-assembler 4.9.6-10 in armhf (Proposed)
- mira-assembler 4.9.6-10 in armhf (Release)
- mira-assembler 4.9.6-7build1 in ppc64el (Release)
- mira-assembler 4.9.6-10 in ppc64el (Proposed)
- mira-assembler 4.9.6-10 in ppc64el (Release)
- mira-assembler 4.9.6-7build1 in riscv64 (Release)
- mira-assembler 4.9.6-10 in riscv64 (Proposed)
- mira-assembler 4.9.6-10 in riscv64 (Release)
- mira-assembler 4.9.6-7build1 in s390x (Release)
- mira-assembler 4.9.6-10 in s390x (Proposed)
- mira-assembler 4.9.6-10 in s390x (Release)