Ubuntu
fasttree package

fasttree 2.1.4-1~ubuntu12.04.1 source package in Ubuntu

Changelog

fasttree (2.1.4-1~ubuntu12.04.1) precise-backports; urgency=low

  * No-change backport to precise (LP: #1186722)
 -- Felix Geyer <email address hidden>   Sun, 21 Jul 2013 15:33:01 +0200

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Uploaded by:
Felix Geyer
Uploaded to:
Precise
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Precise backports universe science

Downloads

File Size SHA-256 Checksum
fasttree_2.1.4.orig.tar.gz 108.0 KiB aa78e03d767955293375713a38e3c3ba46daeb88f7b5568c3929f879821dee53
fasttree_2.1.4-1~ubuntu12.04.1.debian.tar.gz 7.4 KiB 2d2353c3b8bcdde583b51bd41bfa6abc3dad8f75121159e563dc39c2f8b821a8
fasttree_2.1.4-1~ubuntu12.04.1.dsc 2.0 KiB 2c4275db6ae4b7ba1627960b98f18b557bc5a011a9b95b9cd9618041eb506d56

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Binary packages built by this source

fasttree: phylogenetic trees from alignments of nucleotide or protein sequences

 FastTree infers approximately-maximum-likelihood phylogenetic trees from
 alignments of nucleotide or protein sequences. It handles alignments
 with up to a million of sequences in a reasonable amount of time and
 memory. For large alignments, FastTree is 100-1,000 times faster than
 PhyML 3.0 or RAxML 7.
 .
 FastTree is more accurate than PhyML 3 with default settings, and much
 more accurate than the distance-matrix methods that are traditionally
 used for large alignments. FastTree uses the Jukes-Cantor or generalized
 time-reversible (GTR) models of nucleotide evolution and the JTT
 (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account
 for the varying rates of evolution across sites, FastTree uses a single
 rate for each site (the "CAT" approximation). To quickly estimate the
 reliability of each split in the tree, FastTree computes local support
 values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's
 "SH-like local supports").
 .
 This package contains a single threaded version (fasttree) and a
 parallel version which uses OpenMP (fasttreMP).