https://launchpad.net/~rebecca-palmer/+archive/ubuntu/tabulate0p9/+build/28461136
RUN: /usr/share/launchpad-buildd/bin/builder-prep 
Kernel version: Linux lcy02-amd64-051 5.4.0-182-generic #202-Ubuntu SMP Fri Apr 26 12:29:36 UTC 2024 x86_64
Buildd toolchain package versions: launchpad-buildd_237~660~ubuntu20.04.1 python3-lpbuildd_237~660~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1.
Syncing the system clock with the buildd NTP service...
18 May 12:45:34 ntpdate[1818]: adjust time server 10.131.248.1 offset 0.000019 sec
RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28461136 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9
Creating target for build PACKAGEBUILD-28461136
RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28461136
Starting target for build PACKAGEBUILD-28461136
RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28461136 'deb http://ppa.launchpadcontent.net/rebecca-palmer/tabulate0p9/ubuntu oracular main' 'deb http://ftpmaster.internal/ubuntu oracular main universe' 'deb http://ftpmaster.internal/ubuntu oracular-security main universe' 'deb http://ftpmaster.internal/ubuntu oracular-updates main universe' 'deb http://ftpmaster.internal/ubuntu oracular-proposed main universe'
Overriding sources.list in build-PACKAGEBUILD-28461136
RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28461136
Adding trusted keys to build-PACKAGEBUILD-28461136
pub   rsa4096/A6B44E8D0E226513 2022-08-20 [SC]
      Key fingerprint = AC25 C84B 28C1 C9F5 9014  925C A6B4 4E8D 0E22 6513
uid                            Launchpad PPA for Rebecca Palmer

RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28461136
Updating target for build PACKAGEBUILD-28461136
Get:1 http://ppa.launchpadcontent.net/rebecca-palmer/tabulate0p9/ubuntu oracular InRelease [17.9 kB]
Get:2 http://ftpmaster.internal/ubuntu oracular InRelease [73.9 kB]
Get:3 http://ftpmaster.internal/ubuntu oracular-security InRelease [73.9 kB]
Get:4 http://ftpmaster.internal/ubuntu oracular-updates InRelease [73.9 kB]
Get:5 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB]
Get:6 http://ppa.launchpadcontent.net/rebecca-palmer/tabulate0p9/ubuntu oracular/main amd64 Packages [2152 B]
Get:7 http://ppa.launchpadcontent.net/rebecca-palmer/tabulate0p9/ubuntu oracular/main Translation-en [1364 B]
Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 Packages [1396 kB]
Get:9 http://ftpmaster.internal/ubuntu oracular/main Translation-en [512 kB]
Get:10 http://ftpmaster.internal/ubuntu oracular/universe amd64 Packages [15.5 MB]
Get:11 http://ftpmaster.internal/ubuntu oracular/universe Translation-en [6040 kB]
Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [239 kB]
Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main Translation-en [73.7 kB]
Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [1952 kB]
Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/universe Translation-en [559 kB]
Fetched 26.6 MB in 3s (9620 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
  libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30*
  libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3*
  libtirpc3* usrmerge*
The following NEW packages will be installed:
  cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++-13-x86-64-linux-gnu
  g++-x86-64-linux-gnu gcc-13-x86-64-linux-gnu gcc-14-base
  gcc-x86-64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64
  libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64
  libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64
  libtirpc3t64 libunistring5 perl-modules-5.38
The following packages will be upgraded:
  advancecomp apt apt-utils base-files base-passwd bash bash-completion
  binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils
  bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n
  debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13
  gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init
  init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8
  libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils
  libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0
  libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12
  libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl
  libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10
  libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0
  libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4
  libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0
  liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1
  liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2
  libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin
  libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libquadmath0 libseccomp2
  libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1
  libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6
  libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl
  libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1
  libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login
  logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl
  optipng passwd patch perl perl-base pinentry-curses procps psmisc
  readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev
  systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux
  uuid-runtime xz-utils zlib1g
177 upgraded, 23 newly installed, 14 to remove and 0 not upgraded.
Need to get 120 MB of archives.
After this operation, 61.0 MB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libtirpc-common all 1.3.4+ds-1.3 [8106 B]
Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libnsl-dev amd64 1.3.0-3build3 [70.5 kB]
Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libnsl2 amd64 1.3.0-3build3 [41.4 kB]
Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.5 kB]
Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libgssapi-krb5-2 amd64 1.20.1-6ubuntu2 [142 kB]
Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libkrb5-3 amd64 1.20.1-6ubuntu2 [347 kB]
Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libk5crypto3 amd64 1.20.1-6ubuntu2 [81.7 kB]
Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libkrb5support0 amd64 1.20.1-6ubuntu2 [33.5 kB]
Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 libargon2-1 amd64 0~20190702+dfsg-4build1 [20.8 kB]
Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libblkid1 amd64 2.39.3-9ubuntu6 [123 kB]
Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu2 [227 kB]
Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libselinux1 amd64 3.5-2ubuntu2 [79.6 kB]
Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libcap2 amd64 1:2.66-5ubuntu2 [30.0 kB]
Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libudev1 amd64 256~rc1-1~exp2ubuntu1 [188 kB]
Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-3ubuntu3 [139 kB]
Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libjson-c5 amd64 0.17-1build1 [35.3 kB]
Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libuuid1 amd64 2.39.3-9ubuntu6 [35.2 kB]
Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libcryptsetup12 amd64 2:2.7.0-1ubuntu4 [266 kB]
Get:20 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libacl1 amd64 2.3.2-2 [16.8 kB]
Get:21 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libapparmor1 amd64 4.0.1-0ubuntu1 [49.9 kB]
Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libaudit-common all 1:3.1.2-2.1build1 [5736 B]
Get:23 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libcap-ng0 amd64 0.8.5-1 [15.2 kB]
Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 libaudit1 amd64 1:3.1.2-2.1build1 [46.9 kB]
Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libcrypt-dev amd64 1:4.4.36-4build1 [112 kB]
Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libcrypt1 amd64 1:4.4.36-4build1 [82.3 kB]
Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libmount1 amd64 2.39.3-9ubuntu6 [134 kB]
Get:28 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 perl-modules-5.38 all 5.38.2-4 [3110 kB]
Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [734 kB]
Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libgdbm6t64 amd64 1.23-5.1build1 [34.4 kB]
Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libgdbm-compat4t64 amd64 1.23-5.1build1 [6710 B]
Get:32 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libperl5.38t64 amd64 5.38.2-4 [4870 kB]
Get:33 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 perl amd64 5.38.2-4 [231 kB]
Get:34 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 perl-base amd64 5.38.2-4 [1823 kB]
Get:35 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.6 kB]
Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libtext-iconv-perl amd64 1.7-8build3 [13.5 kB]
Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 libtext-charwidth-perl amd64 0.04-11build3 [9358 B]
Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnss-nisplus amd64 1.3-5build1 [22.4 kB]
Get:39 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnss-nis amd64 3.1-0ubuntu7 [26.5 kB]
Get:40 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-dev-bin amd64 2.39-0ubuntu8.1 [20.4 kB]
Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu7 [67.4 kB]
Get:42 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6-dev amd64 2.39-0ubuntu8.1 [2124 kB]
Get:43 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6 amd64 2.39-0ubuntu8.1 [3265 kB]
Get:44 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-bin amd64 2.39-0ubuntu8.1 [682 kB]
Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 openssl amd64 3.0.13-0ubuntu3 [1002 kB]
Get:46 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libsystemd-shared amd64 256~rc1-1~exp2ubuntu1 [2183 kB]
Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [127 kB]
Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libkmod2 amd64 31+20240202-2ubuntu7 [51.7 kB]
Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libssl3t64 amd64 3.0.13-0ubuntu3 [1936 kB]
Get:50 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 systemd-dev all 256~rc1-1~exp2ubuntu1 [105 kB]
Get:51 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 systemd-sysv amd64 256~rc1-1~exp2ubuntu1 [11.9 kB]
Get:52 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 systemd amd64 256~rc1-1~exp2ubuntu1 [3641 kB]
Get:53 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libsystemd0 amd64 256~rc1-1~exp2ubuntu1 [439 kB]
Get:54 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libapt-pkg6.0t64 amd64 2.9.3 [1014 kB]
Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libnettle8t64 amd64 3.9.1-2.2build1 [182 kB]
Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libhogweed6t64 amd64 3.9.1-2.2build1 [199 kB]
Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 libp11-kit0 amd64 0.25.3-4ubuntu2 [299 kB]
Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 libunistring5 amd64 1.2-1 [539 kB]
Get:59 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libgnutls30t64 amd64 3.8.5-2ubuntu1 [1009 kB]
Get:60 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 apt amd64 2.9.3 [1403 kB]
Get:61 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 apt-utils amd64 2.9.3 [223 kB]
Get:62 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpam-modules-bin amd64 1.5.3-7ubuntu1 [51.9 kB]
Get:63 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpam-modules amd64 1.5.3-7ubuntu1 [284 kB]
Get:64 http://ftpmaster.internal/ubuntu oracular/main amd64 bzip2 amd64 1.0.8-5.1 [34.5 kB]
Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [34.3 kB]
Get:66 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 gcc-14-base amd64 14.1.0-1ubuntu1 [48.4 kB]
Get:67 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libgcc-s1 amd64 14.1.0-1ubuntu1 [78.2 kB]
Get:68 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libgpg-error-l10n all 1.49-2 [8228 B]
Get:69 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libgpg-error0 amd64 1.49-2 [70.9 kB]
Get:70 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libgcrypt20 amd64 1.10.3-3 [532 kB]
Get:71 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 liblz4-1 amd64 1.9.4-2 [62.9 kB]
Get:72 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libstdc++6 amd64 14.1.0-1ubuntu1 [794 kB]
Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 libxxhash0 amd64 0.8.2-2build1 [24.1 kB]
Get:74 http://ftpmaster.internal/ubuntu oracular/main amd64 libzstd1 amd64 1.5.5+dfsg2-2build1 [299 kB]
Get:75 http://ftpmaster.internal/ubuntu oracular/main amd64 zlib1g amd64 1:1.3.dfsg-3.1ubuntu2 [62.8 kB]
Get:76 http://ftpmaster.internal/ubuntu oracular/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2ubuntu6 [253 kB]
Get:77 http://ftpmaster.internal/ubuntu oracular/main amd64 libffi8 amd64 3.4.6-1build1 [24.7 kB]
Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 libidn2-0 amd64 2.3.7-2build1 [66.2 kB]
Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 libtasn1-6 amd64 4.19.0-3build1 [43.9 kB]
Get:80 http://ftpmaster.internal/ubuntu oracular/main amd64 libdebconfclient0 amd64 0.271ubuntu3 [11.4 kB]
Get:81 http://ftpmaster.internal/ubuntu oracular/main amd64 base-passwd amd64 3.6.3build1 [51.1 kB]
Get:82 http://ftpmaster.internal/ubuntu oracular/main amd64 libassuan0 amd64 2.5.6-1build1 [37.3 kB]
Get:83 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libsqlite3-0 amd64 3.45.3-1 [701 kB]
Get:84 http://ftpmaster.internal/ubuntu oracular/main amd64 gpg amd64 2.4.4-2ubuntu17 [565 kB]
Get:85 http://ftpmaster.internal/ubuntu oracular/main amd64 libreadline8t64 amd64 8.2-4build1 [153 kB]
Get:86 http://ftpmaster.internal/ubuntu oracular/main amd64 readline-common all 8.2-4build1 [56.5 kB]
Get:87 http://ftpmaster.internal/ubuntu oracular/main amd64 libncursesw6 amd64 6.4+20240113-1ubuntu2 [148 kB]
Get:88 http://ftpmaster.internal/ubuntu oracular/main amd64 libtinfo6 amd64 6.4+20240113-1ubuntu2 [108 kB]
Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 gpg-agent amd64 2.4.4-2ubuntu17 [227 kB]
Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 gpgconf amd64 2.4.4-2ubuntu17 [103 kB]
Get:91 http://ftpmaster.internal/ubuntu oracular/main amd64 pinentry-curses amd64 1.2.1-3ubuntu5 [35.2 kB]
Get:92 http://ftpmaster.internal/ubuntu oracular/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB]
Get:93 http://ftpmaster.internal/ubuntu oracular/main amd64 libnpth0t64 amd64 1.6-3.1build1 [8378 B]
Get:94 http://ftpmaster.internal/ubuntu oracular/main amd64 gpgv amd64 2.4.4-2ubuntu17 [157 kB]
Get:95 http://ftpmaster.internal/ubuntu oracular/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB]
Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 libseccomp2 amd64 2.5.5-1ubuntu3 [50.3 kB]
Get:97 http://ftpmaster.internal/ubuntu oracular/main amd64 debconf-i18n all 1.5.86ubuntu1 [205 kB]
Get:98 http://ftpmaster.internal/ubuntu oracular/main amd64 debconf all 1.5.86ubuntu1 [124 kB]
Get:99 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpam0g amd64 1.5.3-7ubuntu1 [67.8 kB]
Get:100 http://ftpmaster.internal/ubuntu oracular/main amd64 libfdisk1 amd64 2.39.3-9ubuntu6 [146 kB]
Get:101 http://ftpmaster.internal/ubuntu oracular/main amd64 mount amd64 2.39.3-9ubuntu6 [118 kB]
Get:102 http://ftpmaster.internal/ubuntu oracular/main amd64 libcom-err2 amd64 1.47.0-2.4~exp1ubuntu4 [22.8 kB]
Get:103 http://ftpmaster.internal/ubuntu oracular/main amd64 libkeyutils1 amd64 1.6.3-3build1 [9490 B]
Get:104 http://ftpmaster.internal/ubuntu oracular/main amd64 linux-libc-dev amd64 6.8.0-31.31 [1598 kB]
Get:105 http://ftpmaster.internal/ubuntu oracular/main amd64 base-files amd64 13.1ubuntu1 [73.8 kB]
Get:106 http://ftpmaster.internal/ubuntu oracular/main amd64 debianutils amd64 5.17build1 [89.9 kB]
Get:107 http://ftpmaster.internal/ubuntu oracular/main amd64 bash amd64 5.2.21-2ubuntu4 [794 kB]
Get:108 http://ftpmaster.internal/ubuntu oracular/main amd64 bsdutils amd64 1:2.39.3-9ubuntu6 [95.0 kB]
Get:109 http://ftpmaster.internal/ubuntu oracular/main amd64 coreutils amd64 9.4-3ubuntu6 [1412 kB]
Get:110 http://ftpmaster.internal/ubuntu oracular/main amd64 tar amd64 1.35+dfsg-3build1 [253 kB]
Get:111 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 dpkg amd64 1.22.6ubuntu10 [1283 kB]
Get:112 http://ftpmaster.internal/ubuntu oracular/main amd64 dash amd64 0.5.12-6ubuntu5 [89.8 kB]
Get:113 http://ftpmaster.internal/ubuntu oracular/main amd64 diffutils amd64 1:3.10-1build1 [177 kB]
Get:114 http://ftpmaster.internal/ubuntu oracular/main amd64 findutils amd64 4.9.0-5build1 [298 kB]
Get:115 http://ftpmaster.internal/ubuntu oracular/main amd64 grep amd64 3.11-4build1 [162 kB]
Get:116 http://ftpmaster.internal/ubuntu oracular/main amd64 gzip amd64 1.12-1ubuntu3 [98.8 kB]
Get:117 http://ftpmaster.internal/ubuntu oracular/main amd64 hostname amd64 3.23+nmu2ubuntu2 [11.1 kB]
Get:118 http://ftpmaster.internal/ubuntu oracular/main amd64 login amd64 1:4.13+dfsg1-4ubuntu3 [202 kB]
Get:119 http://ftpmaster.internal/ubuntu oracular/main amd64 ncurses-bin amd64 6.4+20240113-1ubuntu2 [188 kB]
Get:120 http://ftpmaster.internal/ubuntu oracular/main amd64 sed amd64 4.9-2build1 [193 kB]
Get:121 http://ftpmaster.internal/ubuntu oracular/main amd64 util-linux amd64 2.39.3-9ubuntu6 [1127 kB]
Get:122 http://ftpmaster.internal/ubuntu oracular/main amd64 ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB]
Get:123 http://ftpmaster.internal/ubuntu oracular/main amd64 sysvinit-utils amd64 3.08-6ubuntu3 [34.2 kB]
Get:124 http://ftpmaster.internal/ubuntu oracular/main amd64 logsave amd64 1.47.0-2.4~exp1ubuntu4 [22.5 kB]
Get:125 http://ftpmaster.internal/ubuntu oracular/main amd64 libext2fs2t64 amd64 1.47.0-2.4~exp1ubuntu4 [222 kB]
Get:126 http://ftpmaster.internal/ubuntu oracular/main amd64 e2fsprogs amd64 1.47.0-2.4~exp1ubuntu4 [601 kB]
Get:127 http://ftpmaster.internal/ubuntu oracular/main amd64 optipng amd64 0.7.8+ds-1build2 [110 kB]
Get:128 http://ftpmaster.internal/ubuntu oracular/main amd64 libpng16-16t64 amd64 1.6.43-5build1 [187 kB]
Get:129 http://ftpmaster.internal/ubuntu oracular/main amd64 init amd64 1.66ubuntu1 [6186 B]
Get:130 http://ftpmaster.internal/ubuntu oracular/main amd64 libsmartcols1 amd64 2.39.3-9ubuntu6 [64.8 kB]
Get:131 http://ftpmaster.internal/ubuntu oracular/main amd64 uuid-runtime amd64 2.39.3-9ubuntu6 [33.1 kB]
Get:132 http://ftpmaster.internal/ubuntu oracular/main amd64 libattr1 amd64 1:2.5.2-1build1 [11.3 kB]
Get:133 http://ftpmaster.internal/ubuntu oracular/main amd64 libmd0 amd64 1.1.0-2build1 [27.0 kB]
Get:134 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpam-runtime all 1.5.3-7ubuntu1 [40.8 kB]
Get:135 http://ftpmaster.internal/ubuntu oracular/main amd64 libsemanage-common all 3.5-1build5 [10.1 kB]
Get:136 http://ftpmaster.internal/ubuntu oracular/main amd64 libsepol2 amd64 3.5-2build1 [303 kB]
Get:137 http://ftpmaster.internal/ubuntu oracular/main amd64 libsemanage2 amd64 3.5-1build5 [93.2 kB]
Get:138 http://ftpmaster.internal/ubuntu oracular/main amd64 passwd amd64 1:4.13+dfsg1-4ubuntu3 [845 kB]
Get:139 http://ftpmaster.internal/ubuntu oracular/main amd64 libproc2-0 amd64 2:4.0.4-4ubuntu3 [59.1 kB]
Get:140 http://ftpmaster.internal/ubuntu oracular/main amd64 libss2 amd64 1.47.0-2.4~exp1ubuntu4 [17.0 kB]
Get:141 http://ftpmaster.internal/ubuntu oracular/main amd64 mawk amd64 1.3.4.20240123-1build1 [127 kB]
Get:142 http://ftpmaster.internal/ubuntu oracular/main amd64 procps amd64 2:4.0.4-4ubuntu3 [708 kB]
Get:143 http://ftpmaster.internal/ubuntu oracular/main amd64 sensible-utils all 0.0.22 [22.5 kB]
Get:144 http://ftpmaster.internal/ubuntu oracular/main amd64 ca-certificates all 20240203 [159 kB]
Get:145 http://ftpmaster.internal/ubuntu oracular/main amd64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB]
Get:146 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 tzdata all 2024a-4ubuntu1 [274 kB]
Get:147 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 bash-completion all 1:2.14.0-1 [206 kB]
Get:148 http://ftpmaster.internal/ubuntu oracular/main amd64 bsdextrautils amd64 2.39.3-9ubuntu6 [73.8 kB]
Get:149 http://ftpmaster.internal/ubuntu oracular/main amd64 libgpm2 amd64 1.20.7-11 [14.1 kB]
Get:150 http://ftpmaster.internal/ubuntu oracular/main amd64 libip4tc2 amd64 1.8.10-3ubuntu2 [23.3 kB]
Get:151 http://ftpmaster.internal/ubuntu oracular/main amd64 libjansson4 amd64 2.14-2build2 [32.8 kB]
Get:152 http://ftpmaster.internal/ubuntu oracular/main amd64 psmisc amd64 23.7-1build1 [179 kB]
Get:153 http://ftpmaster.internal/ubuntu oracular/main amd64 xz-utils amd64 5.6.1+really5.4.5-1 [267 kB]
Get:154 http://ftpmaster.internal/ubuntu oracular/main amd64 advancecomp amd64 2.5-1build1 [182 kB]
Get:155 http://ftpmaster.internal/ubuntu oracular/main amd64 libgprofng0 amd64 2.42-4ubuntu2 [851 kB]
Get:156 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf0 amd64 2.42-4ubuntu2 [94.5 kB]
Get:157 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf-nobfd0 amd64 2.42-4ubuntu2 [97.1 kB]
Get:158 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-x86-64-linux-gnu amd64 2.42-4ubuntu2 [2469 kB]
Get:159 http://ftpmaster.internal/ubuntu oracular/main amd64 libbinutils amd64 2.42-4ubuntu2 [572 kB]
Get:160 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils amd64 2.42-4ubuntu2 [18.0 kB]
Get:161 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-common amd64 2.42-4ubuntu2 [239 kB]
Get:162 http://ftpmaster.internal/ubuntu oracular/main amd64 libsframe1 amd64 2.42-4ubuntu2 [14.8 kB]
Get:163 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libubsan1 amd64 14.1.0-1ubuntu1 [1174 kB]
Get:164 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 g++-13 amd64 13.2.0-25ubuntu1 [15.6 kB]
Get:165 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libstdc++-13-dev amd64 13.2.0-25ubuntu1 [2423 kB]
Get:166 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB]
Get:167 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libitm1 amd64 14.1.0-1ubuntu1 [29.1 kB]
Get:168 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB]
Get:169 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libasan8 amd64 14.1.0-1ubuntu1 [3025 kB]
Get:170 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 liblsan0 amd64 14.1.0-1ubuntu1 [1313 kB]
Get:171 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libhwasan0 amd64 14.1.0-1ubuntu1 [1632 kB]
Get:172 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libquadmath0 amd64 14.1.0-1ubuntu1 [153 kB]
Get:173 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 gcc-13 amd64 13.2.0-25ubuntu1 [488 kB]
Get:174 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libgcc-13-dev amd64 13.2.0-25ubuntu1 [2688 kB]
Get:175 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libtsan2 amd64 14.1.0-1ubuntu1 [2736 kB]
Get:176 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libcc1-0 amd64 14.1.0-1ubuntu1 [48.0 kB]
Get:177 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 cpp-13 amd64 13.2.0-25ubuntu1 [1032 B]
Get:178 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 gcc-13-base amd64 13.2.0-25ubuntu1 [49.9 kB]
Get:179 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB]
Get:180 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpfr6 amd64 4.2.1-1build1 [355 kB]
Get:181 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB]
Get:182 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-25ubuntu1 [21.1 MB]
Get:183 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-25ubuntu1 [12.2 MB]
Get:184 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-25ubuntu1 [10.7 MB]
Get:185 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
Get:186 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
Get:187 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
Get:188 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
Get:189 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
Get:190 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
Get:191 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 dpkg-dev all 1.22.6ubuntu10 [1074 kB]
Get:192 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libdpkg-perl all 1.22.6ubuntu10 [269 kB]
Get:193 http://ftpmaster.internal/ubuntu oracular/main amd64 patch amd64 2.7.6-7build3 [104 kB]
Get:194 http://ftpmaster.internal/ubuntu oracular/main amd64 make amd64 4.3-4.1build2 [180 kB]
Get:195 http://ftpmaster.internal/ubuntu oracular/main amd64 lto-disabled-list all 48 [12.3 kB]
Get:196 http://ftpmaster.internal/ubuntu oracular/main amd64 libfakeroot amd64 1.34-1 [32.4 kB]
Get:197 http://ftpmaster.internal/ubuntu oracular/main amd64 fakeroot amd64 1.34-1 [67.2 kB]
Get:198 http://ftpmaster.internal/ubuntu oracular/main amd64 liblockfile-bin amd64 1.17-1build3 [11.2 kB]
Get:199 http://ftpmaster.internal/ubuntu oracular/main amd64 liblockfile1 amd64 1.17-1build3 [6840 B]
Get:200 http://ftpmaster.internal/ubuntu oracular/main amd64 lockfile-progs amd64 0.1.19+nmu1 [8854 B]
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dpkg: libtirpc3:amd64: dependency problems, but removing anyway as you requested:
 libnss-nisplus:amd64 depends on libtirpc3 (>= 1.0.2).

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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested:
 libperl5.36:amd64 depends on libdb5.3.
 libpam-modules:amd64 depends on libdb5.3.
 apt-utils depends on libdb5.3.

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Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-7) ...
dpkg: libgdbm6:amd64: dependency problems, but removing anyway as you requested:
 libperl5.36:amd64 depends on libgdbm6 (>= 1.21).
 libgdbm-compat4:amd64 depends on libgdbm6 (>= 1.16).

(Reading database ... 15066 files and directories currently installed.)
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dpkg: libgdbm-compat4:amd64: dependency problems, but removing anyway as you requested:
 libperl5.36:amd64 depends on libgdbm-compat4 (>= 1.18-3).

(Reading database ... 15067 files and directories currently installed.)
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Unpacking libgdbm-compat4t64:amd64 (1.23-5.1build1) ...
Selecting previously unselected package libperl5.38t64:amd64.
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Unpacking libperl5.38t64:amd64 (5.38.2-4) ...
Preparing to unpack .../perl-base_5.38.2-4_amd64.deb ...
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Setting up libc6:amd64 (2.39-0ubuntu8.1) ...
(Reading database ... 15601 files and directories currently installed.)
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(Reading database ... 15601 files and directories currently installed.)
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Unpacking openssl (3.0.13-0ubuntu3) over (3.0.10-1ubuntu2) ...
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Unpacking libsystemd-shared:amd64 (256~rc1-1~exp2ubuntu1) over (253.5-1ubuntu6) ...
Preparing to unpack .../liblzma5_5.6.1+really5.4.5-1_amd64.deb ...
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Setting up liblzma5:amd64 (5.6.1+really5.4.5-1) ...
(Reading database ... 15600 files and directories currently installed.)
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Unpacking libkmod2:amd64 (31+20240202-2ubuntu7) over (30+20230519-1ubuntu3) ...
dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested:
 systemd depends on libssl3 (>= 3.0.0).

(Reading database ... 15600 files and directories currently installed.)
Removing libssl3:amd64 (3.0.10-1ubuntu2) ...
Selecting previously unselected package libssl3t64:amd64.
(Reading database ... 15589 files and directories currently installed.)
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Unpacking libssl3t64:amd64 (3.0.13-0ubuntu3) ...
Setting up libssl3t64:amd64 (3.0.13-0ubuntu3) ...
(Reading database ... 15602 files and directories currently installed.)
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Unpacking systemd-dev (256~rc1-1~exp2ubuntu1) over (253.5-1ubuntu6) ...
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Unpacking systemd-sysv (256~rc1-1~exp2ubuntu1) over (253.5-1ubuntu6) ...
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Unpacking systemd (256~rc1-1~exp2ubuntu1) over (253.5-1ubuntu6) ...
dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty
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dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested:
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dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested:
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Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
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Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
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Current default time zone: 'Etc/UTC'
Local time is now:      Sat May 18 12:46:02 UTC 2024.
Universal Time is now:  Sat May 18 12:46:02 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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Setting up libreadline8t64:amd64 (8.2-4build1) ...
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Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
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(Reading database ... 16052 files and directories currently installed.)
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done.
RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28461136 amd64 oracular -c chroot:build-PACKAGEBUILD-28461136 --arch=amd64 --dist=oracular --nolog -A virulencefinder_2.0.5-1ubuntu1.dsc
Initiating build PACKAGEBUILD-28461136 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 5.4.0-182-generic #202-Ubuntu SMP Fri Apr 26 12:29:36 UTC 2024 x86_64
sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-051.buildd

+==============================================================================+
| virulencefinder 2.0.5-1ubuntu1 (amd64)       Sat, 18 May 2024 12:46:06 +0000 |
+==============================================================================+

Package: virulencefinder
Version: 2.0.5-1ubuntu1
Source Version: 2.0.5-1ubuntu1
Distribution: oracular
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: binary

I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28461136/chroot-autobuild' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/virulencefinder-LgZlh7/resolver-vOXE46' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

virulencefinder_2.0.5-1ubuntu1.dsc exists in .; copying to chroot
I: NOTICE: Log filtering will replace 'build/virulencefinder-LgZlh7/virulencefinder-2.0.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/virulencefinder-LgZlh7' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-tabulate, python3-cgecore, ncbi-blast+, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-tabulate, python3-cgecore, ncbi-blast+, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [492 B]
Fetched 1867 B in 0s (141 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  apt-utils bash-completion ca-certificates debconf-i18n krb5-locales
  libgpg-error-l10n libgpm2 libgssapi-krb5-2 libip4tc2 libk5crypto3
  libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl
  libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36
  libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl
  libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl
  perl-modules-5.36 psmisc uuid-runtime
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf
  dh-python dh-strip-nondeterminism dwz file fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0
  libcairo2 libdata-optlist-perl libdebhelper-perl libdeflate0 libdw1t64
  libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfontconfig1
  libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64
  libgraphite2-3 libharfbuzz0b libicu74 libimagequant0 libjbig0 libjpeg-turbo8
  libjpeg8 liblapack3 liblcms2-2 liblerc4 liblmdb0 libmagic-mgc libmagic1t64
  libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libopenjp2-7
  libparams-util-perl libpipeline1 libpixman-1-0 libpython3-stdlib
  libpython3.12-minimal libpython3.12-stdlib libraqm0 libsharpyuv0
  libsub-exporter-perl libsub-install-perl libsub-override-perl
  libsub-prototype-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2
  libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
  libxdmcp6 libxext6 libxml2 libxrender1 m4 man-db media-types ncbi-blast+
  ncbi-data netbase po-debconf python3 python3-biopython python3-cairo
  python3-cgecore python3-chardet python3-freetype python3-minimal
  python3-numpy python3-pil python3-pkg-resources python3-reportlab
  python3-rlpycairo python3-setuptools python3-tabulate python3.12
  python3.12-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings
  xfonts-utils xml-core
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
  python3-installer python3-wheel fonts-freefont-otf | fonts-freefont-ttf
  fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff
  low-memory-monitor liblcms2-utils libtool-doc gfortran | fortran95-compiler
  gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc
  python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree
  mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib
  python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools
  t-coffee wise gfortran python3-dev python3-pytest python-pil-doc pdf-viewer
  python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm
  python-setuptools-doc python3.12-venv python3.12-doc binfmt-support
  sgml-base-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libltdl-dev libmail-sendmail-perl python-biopython-doc
  python3-olefile fonts-dejavu-extra
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf
  dh-python dh-strip-nondeterminism dwz file fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0
  libcairo2 libdata-optlist-perl libdebhelper-perl libdeflate0 libdw1t64
  libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfontconfig1
  libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64
  libgraphite2-3 libharfbuzz0b libicu74 libimagequant0 libjbig0 libjpeg-turbo8
  libjpeg8 liblapack3 liblcms2-2 liblerc4 liblmdb0 libmagic-mgc libmagic1t64
  libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libopenjp2-7
  libparams-util-perl libpipeline1 libpixman-1-0 libpython3-stdlib
  libpython3.12-minimal libpython3.12-stdlib libraqm0 libsharpyuv0
  libsub-exporter-perl libsub-install-perl libsub-override-perl
  libsub-prototype-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2
  libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
  libxdmcp6 libxext6 libxml2 libxrender1 m4 man-db media-types ncbi-blast+
  ncbi-data netbase po-debconf python3 python3-biopython python3-cairo
  python3-cgecore python3-chardet python3-freetype python3-minimal
  python3-numpy python3-pil python3-pkg-resources python3-reportlab
  python3-rlpycairo python3-setuptools python3-tabulate python3.12
  python3.12-minimal sbuild-build-depends-main-dummy sgml-base w3c-sgml-lib
  x11-common xfonts-encodings xfonts-utils xml-core
0 upgraded, 112 newly installed, 0 to remove and 0 not upgraded.
Need to get 74.3 MB of archives.
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Get:2 http://ppa.launchpadcontent.net/rebecca-palmer/tabulate0p9/ubuntu oracular/main amd64 python3-tabulate all 0.9.0-1~ppa1 [45.3 kB]
Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libpython3.12-minimal amd64 3.12.3-1 [833 kB]
Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libexpat1 amd64 2.6.2-1 [86.9 kB]
Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 python3.12-minimal amd64 3.12.3-1 [2343 kB]
Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-minimal amd64 3.12.3-0ubuntu1 [27.2 kB]
Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 media-types all 10.1.0 [27.5 kB]
Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 netbase all 6.4 [13.1 kB]
Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [2067 kB]
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Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 sgml-base all 1.31 [11.4 kB]
Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libbsd0 amd64 0.12.2-1 [41.2 kB]
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Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libfribidi0 amd64 1.0.13-3build1 [26.1 kB]
Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libglib2.0-0t64 amd64 2.80.1-0ubuntu2 [1546 kB]
Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libicu74 amd64 74.2-1ubuntu3 [10.9 MB]
Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libxml2 amd64 2.9.14+dfsg-1.3ubuntu3 [762 kB]
Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB]
Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libmagic-mgc amd64 1:5.45-3build1 [307 kB]
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Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 file amd64 1:5.45-3build1 [22.0 kB]
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Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 autoconf all 2.71-3 [339 kB]
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Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 autopoint all 0.21-14ubuntu2 [422 kB]
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Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
Get:45 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libparams-util-perl amd64 1.102-3 [21.1 kB]
Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 libsub-install-perl all 0.929-1 [9764 B]
Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 libdata-optlist-perl all 0.114-1 [9708 B]
Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libsub-exporter-perl all 0.990-1 [49.0 kB]
Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsub-prototype-perl amd64 0.03-2build3 [9096 B]
Get:50 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libsub-override-perl all 0.11-1 [9754 B]
Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB]
Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 dh-strip-nondeterminism all 1.13.1-1 [5362 B]
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Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 debugedit amd64 1:5.0-5build2 [46.1 kB]
Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 dwz amd64 0.15-1build6 [115 kB]
Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 gettext amd64 0.21-14ubuntu2 [864 kB]
Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 debhelper all 13.14.1ubuntu5 [869 kB]
Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-setuptools all 68.1.2-2ubuntu1 [396 kB]
Get:61 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 dh-python all 6.20240422 [110 kB]
Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
Get:64 http://ftpmaster.internal/ubuntu oracular/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB]
Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 libbrotli1 amd64 1.1.0-2build2 [331 kB]
Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 libfreetype6 amd64 2.13.2+dfsg-1build3 [402 kB]
Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
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Get:72 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB]
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Get:74 http://ftpmaster.internal/ubuntu oracular/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB]
Get:75 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libxcb-render0 amd64 1.17.0-1 [16.2 kB]
Get:76 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libxcb-shm0 amd64 1.17.0-1 [5746 B]
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Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 libcairo2 amd64 1.18.0-3build1 [566 kB]
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Get:90 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedx509-1t64 amd64 2.28.8-1 [46.6 kB]
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Get:103 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB]
Get:104 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 python3-pil amd64 10.3.0-2 [457 kB]
Get:105 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-cairo amd64 1.26.0-1 [119 kB]
Get:106 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-freetype all 2.4.0-1 [83.1 kB]
Get:107 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B]
Get:108 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-reportlab all 4.2.0-2 [1130 kB]
Get:109 http://ftpmaster.internal/ubuntu oracular/main amd64 xml-core all 0.19 [20.3 kB]
Get:110 http://ftpmaster.internal/ubuntu oracular/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB]
Get:111 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-biopython amd64 1.83+dfsg1-2 [1653 kB]
Get:112 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cgecore all 1.5.6+ds-1 [28.8 kB]
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Setting up libpipeline1:amd64 (1.5.7-2) ...
Setting up liblmdb0:amd64 (0.9.31-1build1) ...
Setting up libgraphite2-3:amd64 (1.3.14-2build1) ...
Setting up liblcms2-2:amd64 (2.14-2build1) ...
Setting up ncbi-data (6.1.20170106+dfsg2-2) ...
Setting up libpixman-1-0:amd64 (0.42.2-1build1) ...
Setting up libsharpyuv0:amd64 (1.4.0-0.1) ...
Setting up libxau6:amd64 (1:1.0.9-1build6) ...
Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu2) ...
Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ...
Setting up libmagic-mgc (1:5.45-3build1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.14.1ubuntu5) ...
Setting up libbrotli1:amd64 (1.1.0-2build2) ...
Setting up libmagic1t64:amd64 (1:5.45-3build1) ...
Setting up x11-common (1:7.7+23ubuntu3) ...
Running in chroot, ignoring request.
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libdeflate0:amd64 (1.20-1) ...
Setting up gettext-base (0.21-14ubuntu2) ...
Setting up m4 (1.4.19-4build1) ...
Setting up file (1:5.45-3build1) ...
Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up libelf1t64:amd64 (0.191-1) ...
Setting up libdw1t64:amd64 (0.191-1) ...
Setting up libfontenc1:amd64 (1:1.1.8-1build1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libglib2.0-0t64:amd64 (2.80.1-0ubuntu2) ...
No schema files found: doing nothing.
Setting up libblas3:amd64 (3.12.0-3build1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up libfreetype6:amd64 (2.13.2+dfsg-1build3) ...
Setting up libx11-data (2:1.8.7-1build1) ...
Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
Setting up libfribidi0:amd64 (1.0.13-3build1) ...
Setting up libimagequant0:amd64 (2.18.0-1build1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up autopoint (0.21-14ubuntu2) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ...
Setting up libparams-util-perl (1.102-3) ...
Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ...
Setting up autoconf (2.71-3) ...
Setting up libwebp7:amd64 (1.4.0-0.1) ...
Setting up libicu74:amd64 (74.2-1ubuntu3) ...
Setting up dwz (0.15-1build6) ...
Setting up libuchardet0:amd64 (0.0.8-1build1) ...
Setting up debugedit (1:5.0-5build2) ...
Setting up libopenjp2-7:amd64 (2.5.0-2build3) ...
Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ...
Setting up netbase (6.4) ...
Setting up sgml-base (1.31) ...
Setting up libwebpmux3:amd64 (1.4.0-0.1) ...
Setting up libbsd0:amd64 (0.12.2-1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.3ubuntu3) ...
Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
Setting up automake (1:1.16.5-1.3ubuntu1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu6) ...
Setting up liblapack3:amd64 (3.12.0-3build1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up libxcb1:amd64 (1.17.0-1) ...
Setting up gettext (0.21-14ubuntu2) ...
Setting up libmbedx509-1t64:amd64 (2.28.8-1) ...
Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ...
Setting up libtool (2.4.7-7build1) ...
Setting up libxcb-render0:amd64 (1.17.0-1) ...
Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
Setting up libwebpdemux2:amd64 (1.4.0-0.1) ...
Setting up python3.12 (3.12.3-1) ...
Setting up libxcb-shm0:amd64 (1.17.0-1) ...
Setting up xfonts-utils (1:7.7+6build3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libraqm0:amd64 (0.10.1-1build1) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up libmbedtls14t64:amd64 (2.28.8-1) ...
Setting up groff-base (1.23.0-4) ...
Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu2) ...
Setting up xml-core (0.19) ...
Setting up libx11-6:amd64 (2:1.8.7-1build1) ...
Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libpython3-stdlib:amd64 (3.12.3-0ubuntu1) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:amd64 (2:1.3.4-1build2) ...
Setting up libsub-prototype-perl (0.03-2build3) ...
Setting up python3 (3.12.3-0ubuntu1) ...
Setting up fonts-urw-base35 (20200910-8) ...
Setting up python3-freetype (2.4.0-1) ...
Setting up man-db (2.12.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' → '/usr/lib/systemd/system/man-db.timer'.
Setting up libcairo2:amd64 (1.18.0-3build1) ...
Setting up ncbi-blast+ (2.12.0+ds-4build2) ...
Setting up python3-pil:amd64 (10.3.0-2) ...
Setting up libsub-override-perl (0.11-1) ...
Setting up python3-pkg-resources (68.1.2-2ubuntu1) ...
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up python3-cairo (1.26.0-1) ...
Setting up python3-setuptools (68.1.2-2ubuntu1) ...
Setting up python3-tabulate (0.9.0-1~ppa1) ...
Setting up python3-chardet (5.2.0+dfsg-1) ...
Setting up python3-rlpycairo (0.3.0-3) ...
Setting up python3-numpy (1:1.26.4+ds-6ubuntu1) ...
Setting up python3-reportlab (4.2.0-2) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dh-python (6.20240422) ...
Setting up debhelper (13.14.1ubuntu5) ...
Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
Processing triggers for systemd (256~rc1-1~exp2ubuntu1) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.83+dfsg1-2) ...
Setting up python3-cgecore (1.5.6+ds-1) ...
/usr/lib/python3/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w'
  start = re.search("^-*(\w+)", align_query).start(1)
/usr/lib/python3/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w'
  end = re.search("\w+(-*)$", align_query).start(1)
/usr/lib/python3/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{'
  """
/usr/lib/python3/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w'
  src = re.sub('[^\w/\-\.\*]', '', src)
/usr/lib/python3/dist-packages/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w'
  dst = re.sub('[^\w/\-\.\*]', '', dst)
/usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
  if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
/usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
  if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
/usr/lib/python3/dist-packages/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w'
  invalid_chars = re.findall('[^\w/\-\.\*]', os.path.basename(file_))
/usr/lib/python3/dist-packages/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w'
  src = re.sub('[^\w/\-\.\*]', '', src)
/usr/lib/python3/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w'
  dst = re.sub('[^\w/\-\.\*]', '', dst)
/usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
  if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
/usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
  if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.4.0-182-generic #202-Ubuntu SMP Fri Apr 26 12:29:36 UTC 2024 amd64 (x86_64)
Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu10 g++-13_13.2.0-25ubuntu1 gcc-13_13.2.0-25ubuntu1 libc6-dev_2.39-0ubuntu8.1 libstdc++-13-dev_13.2.0-25ubuntu1 libstdc++6_14.1.0-1ubuntu1 linux-libc-dev_6.8.0-31.31
Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.9.3 apt-utils_2.9.3 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13.1ubuntu1 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.14.0-1 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-x86-64-linux-gnu_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-25ubuntu1 cpp-13-x86-64-linux-gnu_13.2.0-25ubuntu1 cpp-x86-64-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-python_6.20240422 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 dpkg_1.22.6ubuntu10 dpkg-dev_1.22.6ubuntu10 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.34-1 file_1:5.45-3build1 findutils_4.9.0-5build1 fontconfig-config_2.15.0-1.1ubuntu2 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-urw-base35_20200910-8 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-25ubuntu1 g++-13-x86-64-linux-gnu_13.2.0-25ubuntu1 g++-x86-64-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-25ubuntu1 gcc-13-base_13.2.0-25ubuntu1 gcc-13-x86-64-linux-gnu_13.2.0-25ubuntu1 gcc-14-base_14.1.0-1ubuntu1 gcc-x86-64-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-4 gzip_1.12-1ubuntu3 hostname_3.23+nmu2ubuntu2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-2 libapparmor1_4.0.1-0ubuntu1 libapt-pkg6.0t64_2.9.3 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4build1 libasan8_14.1.0-1ubuntu1 libassuan0_2.5.6-1build1 libatomic1_14.1.0-1ubuntu1 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblas3_3.12.0-3build1 libblkid1_2.39.3-9ubuntu6 libbrotli1_1.1.0-2build2 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8.1 libc-dev-bin_2.39-0ubuntu8.1 libc6_2.39-0ubuntu8.1 libc6-dev_2.39-0ubuntu8.1 libcairo2_1.18.0-3build1 libcap-ng0_0.8.5-1 libcap2_1:2.66-5ubuntu2 libcc1-0_14.1.0-1ubuntu1 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu4 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libdata-optlist-perl_0.114-1 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.14.1ubuntu5 libdeflate0_1.20-1 libdevmapper1.02.1_2:1.02.185-3ubuntu3 libdpkg-perl_1.22.6ubuntu10 libdw1t64_0.191-1 libelf1t64_0.191-1 libexpat1_2.6.2-1 libext2fs2t64_1.47.0-2.4~exp1ubuntu4 libfakeroot_1.34-1 libfdisk1_2.39.3-9ubuntu6 libffi8_3.4.6-1build1 libfile-stripnondeterminism-perl_1.13.1-1 libfontconfig1_2.15.0-1.1ubuntu2 libfontenc1_1:1.1.8-1build1 libfreetype6_2.13.2+dfsg-1build3 libfribidi0_1.0.13-3build1 libgcc-13-dev_13.2.0-25ubuntu1 libgcc-s1_14.1.0-1ubuntu1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1build1 libgdbm6t64_1.23-5.1build1 libgfortran5_14.1.0-1ubuntu1 libglib2.0-0t64_2.80.1-0ubuntu2 libgmp10_2:6.3.0+dfsg-2ubuntu6 libgnutls30t64_3.8.5-2ubuntu1 libgomp1_14.1.0-1ubuntu1 libgpg-error-l10n_1.49-2 libgpg-error0_1.49-2 libgpm2_1.20.7-11 libgprofng0_2.42-4ubuntu2 libgraphite2-3_1.3.14-2build1 libgssapi-krb5-2_1.20.1-6ubuntu2 libharfbuzz0b_8.3.0-2build2 libhogweed6t64_3.9.1-2.2build1 libhwasan0_14.1.0-1ubuntu1 libicu74_74.2-1ubuntu3 libidn2-0_2.3.7-2build1 libimagequant0_2.18.0-1build1 libip4tc2_1.8.10-3ubuntu2 libisl23_0.26-3build1 libitm1_14.1.0-1ubuntu1 libjansson4_2.14-2build2 libjbig0_2.1-6.1ubuntu2 libjpeg-turbo8_2.1.5-2ubuntu2 libjpeg8_8c-2ubuntu11 libjson-c5_0.17-1build1 libk5crypto3_1.20.1-6ubuntu2 libkeyutils1_1.6.3-3build1 libkmod2_31+20240202-2ubuntu7 libkrb5-3_1.20.1-6ubuntu2 libkrb5support0_1.20.1-6ubuntu2 liblapack3_3.12.0-3build1 liblcms2-2_2.14-2build1 liblerc4_4.0.0+ds-4ubuntu2 liblmdb0_0.9.31-1build1 liblocale-gettext-perl_1.07-7 liblockfile-bin_1.17-1build3 liblockfile1_1.17-1build3 liblsan0_14.1.0-1ubuntu1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3build1 libmagic1t64_1:5.45-3build1 libmbedcrypto7t64_2.28.8-1 libmbedtls14t64_2.28.8-1 libmbedx509-1t64_2.28.8-1 libmd0_1.1.0-2build1 libmount1_2.39.3-9ubuntu6 libmpc3_1.3.1-1build1 libmpfr6_4.2.1-1build1 libncursesw6_6.4+20240113-1ubuntu2 libnettle8t64_3.9.1-2.2build1 libnpth0t64_1.6-3.1build1 libnsl-dev_1.3.0-3build3 libnsl2_1.3.0-3build3 libnss-nis_3.1-0ubuntu7 libnss-nisplus_1.3-5build1 libopenjp2-7_2.5.0-2build3 libp11-kit0_0.25.3-4ubuntu2 libpam-modules_1.5.3-7ubuntu1 libpam-modules-bin_1.5.3-7ubuntu1 libpam-runtime_1.5.3-7ubuntu1 libpam0g_1.5.3-7ubuntu1 libparams-util-perl_1.102-3 libpcre2-8-0_10.42-4ubuntu2 libperl5.36_5.36.0-9ubuntu1 libperl5.38t64_5.38.2-4 libpipeline1_1.5.7-2 libpixman-1-0_0.42.2-1build1 libpng16-16t64_1.6.43-5build1 libproc2-0_2:4.0.4-4ubuntu3 libpython3-stdlib_3.12.3-0ubuntu1 libpython3.12-minimal_3.12.3-1 libpython3.12-stdlib_3.12.3-1 libquadmath0_14.1.0-1ubuntu1 libraqm0_0.10.1-1build1 libreadline8t64_8.2-4build1 libseccomp2_2.5.5-1ubuntu3 libselinux1_3.5-2ubuntu2 libsemanage-common_3.5-1build5 libsemanage2_3.5-1build5 libsepol2_3.5-2build1 libsframe1_2.42-4ubuntu2 libsharpyuv0_1.4.0-0.1 libsmartcols1_2.39.3-9ubuntu6 libsqlite3-0_3.45.3-1 libss2_1.47.0-2.4~exp1ubuntu4 libssl3t64_3.0.13-0ubuntu3 libstdc++-13-dev_13.2.0-25ubuntu1 libstdc++6_14.1.0-1ubuntu1 libsub-exporter-perl_0.990-1 libsub-install-perl_0.929-1 libsub-override-perl_0.11-1 libsub-prototype-perl_0.03-2build3 libsystemd-shared_256~rc1-1~exp2ubuntu1 libsystemd0_256~rc1-1~exp2ubuntu1 libtasn1-6_4.19.0-3build1 libtext-charwidth-perl_0.04-11build3 libtext-iconv-perl_1.7-8build3 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: virulencefinder
Binary: virulencefinder, virulencefinder-examples
Architecture: all
Version: 2.0.5-1ubuntu1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://bitbucket.org/genomicepidemiology/virulencefinder
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/virulencefinder
Vcs-Git: https://salsa.debian.org/med-team/virulencefinder.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-tabulate, python3-cgecore, ncbi-blast+ <!nocheck>
Package-List:
 virulencefinder deb science optional arch=all
 virulencefinder-examples deb science optional arch=all
Checksums-Sha1:
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gpgv: Signature made Sat Mar  9 11:28:05 2024 UTC
gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./virulencefinder_2.0.5-1ubuntu1.dsc: no acceptable signature found
dpkg-source: info: extracting virulencefinder in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking virulencefinder_2.0.5.orig.tar.xz
dpkg-source: info: unpacking virulencefinder_2.0.5-1ubuntu1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying reproducible_build.patch
dpkg-source: info: applying python3.12.patch
dpkg-source: info: applying adjust-reference-data.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=noautodbgsym parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28461136
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28461136
SCHROOT_COMMAND=env
SCHROOT_GID=2501
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=build-PACKAGEBUILD-28461136
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon <buildd@lcy02-amd64-051.buildd> -b -rfakeroot
dpkg-buildpackage: info: source package virulencefinder
dpkg-buildpackage: info: source version 2.0.5-1ubuntu1
dpkg-buildpackage: info: source distribution noble
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: rm -rf test/Hit_in_genome_seq.fsa test/Virulence_genes.fsa test/data.json test/tmp test/results_tab.tsv test/results.txt
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
W: pybuild base:341: missing command (plugin=custom, method=configure, interpreter=python3.12, version=3.12)
   dh_auto_build -O--buildsystem=pybuild
W: pybuild base:341: missing command (plugin=custom, method=build, interpreter=python3.12, version=3.12)
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
./virulencefinder.py -i test/test.fsa -o test/ -p test/database/ -mp blastn -x -q ; \
file=test/results_tab.tsv ; \
DIFF=$(diff "$file" test/test_results.tsv) ; \
if [ "$DIFF" = "" ] && [ -s "$file" ] ; then \
    echo "TEST SUCCEEDED" ; \
else \
   echo "TEST FAILED"; \
fi
TEST SUCCEEDED
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
   dh_auto_install -O--buildsystem=pybuild
W: pybuild base:341: missing command (plugin=custom, method=install, interpreter=python3.12, version=3.12)
   dh_install -O--buildsystem=pybuild
   dh_installdocs -O--buildsystem=pybuild
   dh_installchangelogs -O--buildsystem=pybuild
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman --language=C
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_python3 -O--buildsystem=pybuild
I: dh_python3 tools:113: replacing shebang in debian/virulencefinder/usr/share/virulencefinder/virulencefinder.py
   dh_installsystemduser -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
   dh_fixperms -O--buildsystem=pybuild
   dh_missing -O--buildsystem=pybuild
   dh_installdeb -O--buildsystem=pybuild
   dh_gencontrol -O--buildsystem=pybuild
   dh_md5sums -O--buildsystem=pybuild
   dh_builddeb -O--buildsystem=pybuild
INFO: pkgstriptranslations version 154
INFO: pkgstriptranslations version 154
INFO: Disabling pkgstriptranslations for PPA build
INFO: Disabling pkgstriptranslations for PPA build
INFO: Disabling pkgmaintainermangler for PPA build
INFO: Disabling pkgmaintainermangler for PPA build
INFO: Disabling pkgstripfiles for PPA build
dpkg-deb: building package 'virulencefinder-examples' in '../virulencefinder-examples_2.0.5-1ubuntu1_all.deb'.
INFO: Disabling pkgstripfiles for PPA build
dpkg-deb: building package 'virulencefinder' in '../virulencefinder_2.0.5-1ubuntu1_all.deb'.
 dpkg-genbuildinfo --build=binary -O../virulencefinder_2.0.5-1ubuntu1_amd64.buildinfo
 dpkg-genchanges --build=binary -mLaunchpad Build Daemon <buildd@lcy02-amd64-051.buildd> -O../virulencefinder_2.0.5-1ubuntu1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-05-18T12:46:52Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


virulencefinder_2.0.5-1ubuntu1_amd64.changes:
---------------------------------------------

Format: 1.8
Date: Sat, 09 Mar 2024 12:27:51 +0100
Source: virulencefinder
Binary: virulencefinder virulencefinder-examples
Built-For-Profiles: noudeb
Architecture: all
Version: 2.0.5-1ubuntu1
Distribution: oracular
Urgency: medium
Maintainer: Launchpad Build Daemon <buildd@lcy02-amd64-051.buildd>
Changed-By: Matthias Klose <doko@ubuntu.com>
Description:
 virulencefinder - identify virulence genes in total or partial sequenced isolates o
 virulencefinder-examples - example data for virulencefinder
Changes:
 virulencefinder (2.0.5-1ubuntu1) noble; urgency=medium
 .
   * Drop dependency on python3-distutils.
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Files:
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 2796b913401c93c37b4e4598fa45d332 13702 science optional virulencefinder_2.0.5-1ubuntu1_all.deb
 7044b7bf1ebd869a88c0a9e7ea64a63e 8734 science optional virulencefinder_2.0.5-1ubuntu1_amd64.buildinfo
/<<BUILDDIR>>/virulencefinder_2.0.5-1ubuntu1_amd64.changes.new could not be renamed to /<<BUILDDIR>>/virulencefinder_2.0.5-1ubuntu1_amd64.changes: Illegal seek
Distribution field may be wrong!!!
+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: virulencefinder
Binary: virulencefinder virulencefinder-examples
Architecture: all
Version: 2.0.5-1ubuntu1
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Build-Origin: Ubuntu
Build-Architecture: amd64
Build-Date: Sat, 18 May 2024 12:46:52 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
 usr-local-has-programs
Installed-Build-Depends:
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3ubuntu1),
 autopoint (= 0.21-14ubuntu2),
 autotools-dev (= 20220109.1),
 base-files (= 13.1ubuntu1),
 base-passwd (= 3.6.3build1),
 bash (= 5.2.21-2ubuntu4),
 binutils (= 2.42-4ubuntu2),
 binutils-common (= 2.42-4ubuntu2),
 binutils-x86-64-linux-gnu (= 2.42-4ubuntu2),
 bsdextrautils (= 2.39.3-9ubuntu6),
 bsdutils (= 1:2.39.3-9ubuntu6),
 build-essential (= 12.10ubuntu1),
 bzip2 (= 1.0.8-5.1),
 coreutils (= 9.4-3ubuntu6),
 cpp (= 4:13.2.0-7ubuntu1),
 cpp-13 (= 13.2.0-25ubuntu1),
 cpp-13-x86-64-linux-gnu (= 13.2.0-25ubuntu1),
 cpp-x86-64-linux-gnu (= 4:13.2.0-7ubuntu1),
 dash (= 0.5.12-6ubuntu5),
 debconf (= 1.5.86ubuntu1),
 debhelper (= 13.14.1ubuntu5),
 debianutils (= 5.17build1),
 debugedit (= 1:5.0-5build2),
 dh-autoreconf (= 20),
 dh-python (= 6.20240422),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.10-1build1),
 dpkg (= 1.22.6ubuntu10),
 dpkg-dev (= 1.22.6ubuntu10),
 dwz (= 0.15-1build6),
 file (= 1:5.45-3build1),
 findutils (= 4.9.0-5build1),
 fontconfig-config (= 2.15.0-1.1ubuntu2),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 fonts-urw-base35 (= 20200910-8),
 g++ (= 4:13.2.0-7ubuntu1),
 g++-13 (= 13.2.0-25ubuntu1),
 g++-13-x86-64-linux-gnu (= 13.2.0-25ubuntu1),
 g++-x86-64-linux-gnu (= 4:13.2.0-7ubuntu1),
 gcc (= 4:13.2.0-7ubuntu1),
 gcc-13 (= 13.2.0-25ubuntu1),
 gcc-13-base (= 13.2.0-25ubuntu1),
 gcc-13-x86-64-linux-gnu (= 13.2.0-25ubuntu1),
 gcc-14-base (= 14.1.0-1ubuntu1),
 gcc-x86-64-linux-gnu (= 4:13.2.0-7ubuntu1),
 gettext (= 0.21-14ubuntu2),
 gettext-base (= 0.21-14ubuntu2),
 grep (= 3.11-4build1),
 groff-base (= 1.23.0-4),
 gzip (= 1.12-1ubuntu3),
 hostname (= 3.23+nmu2ubuntu2),
 init-system-helpers (= 1.66ubuntu1),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-2),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 14.1.0-1ubuntu1),
 libatomic1 (= 14.1.0-1ubuntu1),
 libattr1 (= 1:2.5.2-1build1),
 libaudit-common (= 1:3.1.2-2.1build1),
 libaudit1 (= 1:3.1.2-2.1build1),
 libbinutils (= 2.42-4ubuntu2),
 libblas3 (= 3.12.0-3build1),
 libblkid1 (= 2.39.3-9ubuntu6),
 libbrotli1 (= 1.1.0-2build2),
 libbsd0 (= 0.12.2-1),
 libbz2-1.0 (= 1.0.8-5.1),
 libc-bin (= 2.39-0ubuntu8.1),
 libc-dev-bin (= 2.39-0ubuntu8.1),
 libc6 (= 2.39-0ubuntu8.1),
 libc6-dev (= 2.39-0ubuntu8.1),
 libcairo2 (= 1.18.0-3build1),
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 libgcc-13-dev (= 13.2.0-25ubuntu1),
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 libgdbm-compat4t64 (= 1.23-5.1build1),
 libgdbm6t64 (= 1.23-5.1build1),
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 libhwasan0 (= 14.1.0-1ubuntu1),
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 libpixman-1-0 (= 0.42.2-1build1),
 libpng16-16t64 (= 1.6.43-5build1),
 libpython3-stdlib (= 3.12.3-0ubuntu1),
 libpython3.12-minimal (= 3.12.3-1),
 libpython3.12-stdlib (= 3.12.3-1),
 libquadmath0 (= 14.1.0-1ubuntu1),
 libraqm0 (= 0.10.1-1build1),
 libreadline8t64 (= 8.2-4build1),
 libseccomp2 (= 2.5.5-1ubuntu3),
 libselinux1 (= 3.5-2ubuntu2),
 libsframe1 (= 2.42-4ubuntu2),
 libsharpyuv0 (= 1.4.0-0.1),
 libsmartcols1 (= 2.39.3-9ubuntu6),
 libsqlite3-0 (= 3.45.3-1),
 libssl3t64 (= 3.0.13-0ubuntu3),
 libstdc++-13-dev (= 13.2.0-25ubuntu1),
 libstdc++6 (= 14.1.0-1ubuntu1),
 libsub-exporter-perl (= 0.990-1),
 libsub-install-perl (= 0.929-1),
 libsub-override-perl (= 0.11-1),
 libsub-prototype-perl (= 0.03-2build3),
 libsystemd0 (= 256~rc1-1~exp2ubuntu1),
 libtiff6 (= 4.5.1+git230720-4ubuntu2),
 libtinfo6 (= 6.4+20240113-1ubuntu2),
 libtool (= 2.4.7-7build1),
 libtsan2 (= 14.1.0-1ubuntu1),
 libubsan1 (= 14.1.0-1ubuntu1),
 libuchardet0 (= 0.0.8-1build1),
 libudev1 (= 256~rc1-1~exp2ubuntu1),
 libunistring5 (= 1.2-1),
 libuuid1 (= 2.39.3-9ubuntu6),
 libwebp7 (= 1.4.0-0.1),
 libwebpdemux2 (= 1.4.0-0.1),
 libwebpmux3 (= 1.4.0-0.1),
 libx11-6 (= 2:1.8.7-1build1),
 libx11-data (= 2:1.8.7-1build1),
 libxau6 (= 1:1.0.9-1build6),
 libxcb-render0 (= 1.17.0-1),
 libxcb-shm0 (= 1.17.0-1),
 libxcb1 (= 1.17.0-1),
 libxdmcp6 (= 1:1.1.3-0ubuntu6),
 libxext6 (= 2:1.3.4-1build2),
 libxml2 (= 2.9.14+dfsg-1.3ubuntu3),
 libxrender1 (= 1:0.9.10-1.1build1),
 libzstd1 (= 1.5.5+dfsg2-2build1),
 linux-libc-dev (= 6.8.0-31.31),
 login (= 1:4.13+dfsg1-4ubuntu3),
 lto-disabled-list (= 48),
 m4 (= 1.4.19-4build1),
 make (= 4.3-4.1build2),
 man-db (= 2.12.1-1),
 mawk (= 1.3.4.20240123-1build1),
 media-types (= 10.1.0),
 ncbi-blast+ (= 2.12.0+ds-4build2),
 ncbi-data (= 6.1.20170106+dfsg2-2),
 ncurses-base (= 6.4+20240113-1ubuntu2),
 ncurses-bin (= 6.4+20240113-1ubuntu2),
 netbase (= 6.4),
 patch (= 2.7.6-7build3),
 perl (= 5.38.2-4),
 perl-base (= 5.38.2-4),
 perl-modules-5.38 (= 5.38.2-4),
 po-debconf (= 1.0.21+nmu1),
 python3 (= 3.12.3-0ubuntu1),
 python3-biopython (= 1.83+dfsg1-2),
 python3-cairo (= 1.26.0-1),
 python3-cgecore (= 1.5.6+ds-1),
 python3-chardet (= 5.2.0+dfsg-1),
 python3-freetype (= 2.4.0-1),
 python3-minimal (= 3.12.3-0ubuntu1),
 python3-numpy (= 1:1.26.4+ds-6ubuntu1),
 python3-pil (= 10.3.0-2),
 python3-pkg-resources (= 68.1.2-2ubuntu1),
 python3-reportlab (= 4.2.0-2),
 python3-rlpycairo (= 0.3.0-3),
 python3-setuptools (= 68.1.2-2ubuntu1),
 python3-tabulate (= 0.9.0-1~ppa1),
 python3.12 (= 3.12.3-1),
 python3.12-minimal (= 3.12.3-1),
 readline-common (= 8.2-4build1),
 rpcsvc-proto (= 1.4.2-0ubuntu7),
 sed (= 4.9-2build1),
 sensible-utils (= 0.0.22),
 sgml-base (= 1.31),
 sysvinit-utils (= 3.08-6ubuntu3),
 tar (= 1.35+dfsg-3build1),
 tzdata (= 2024a-4ubuntu1),
 util-linux (= 2.39.3-9ubuntu6),
 w3c-sgml-lib (= 1.3-3),
 x11-common (= 1:7.7+23ubuntu3),
 xfonts-encodings (= 1:1.0.5-0ubuntu2),
 xfonts-utils (= 1:7.7+6build3),
 xml-core (= 0.19),
 xz-utils (= 5.6.1+really5.4.5-1),
 zlib1g (= 1:1.3.dfsg-3.1ubuntu2)
Environment:
 DEB_BUILD_OPTIONS="noautodbgsym parallel=4"
 DEB_BUILD_PROFILES="noudeb"
 LANG="C.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1709983671"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


virulencefinder-examples_2.0.5-1ubuntu1_all.deb
-----------------------------------------------

 new Debian package, version 2.0.
 size 373010 bytes: control archive=1017 bytes.
     796 bytes,    19 lines      control
    1270 bytes,    14 lines      md5sums
 Package: virulencefinder-examples
 Source: virulencefinder
 Version: 2.0.5-1ubuntu1
 Architecture: all
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 407
 Recommends: virulencefinder
 Section: science
 Priority: optional
 Homepage: https://bitbucket.org/genomicepidemiology/virulencefinder
 Description: example data for virulencefinder
  The VirulenceFinder service contains one Python script
  virulencefinder.py which is the script of the latest version of the
  VirulenceFinder service. VirulenceFinder identifies viruelnce genes in
  total or partial sequenced isolates of bacteria - at the moment only E.
  coli, Enterococcus, S. aureus and Listeria are available.
  .
  This package provides an example for virulencefinder including
  ecoli database.

drwxr-xr-x root/root         0 2024-03-09 11:27 ./
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/doc/virulencefinder-examples/
-rw-r--r-- root/root      1238 2024-03-09 11:27 ./usr/share/doc/virulencefinder-examples/changelog.Debian.gz
-rw-r--r-- root/root       496 2024-02-18 16:34 ./usr/share/doc/virulencefinder-examples/copyright
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/doc/virulencefinder/
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/doc/virulencefinder/examples/
-rw-r--r-- root/root      2966 2024-03-09 11:27 ./usr/share/doc/virulencefinder/examples/Hit_in_genome_seq.fsa
-rw-r--r-- root/root      2800 2024-03-09 11:27 ./usr/share/doc/virulencefinder/examples/Virulence_genes.fsa
-rw-r--r-- root/root      1556 2024-03-09 11:27 ./usr/share/doc/virulencefinder/examples/data.json
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/doc/virulencefinder/examples/database/
-rw-r--r-- root/root       273 2024-01-31 14:48 ./usr/share/doc/virulencefinder/examples/database/config
-rw-r--r-- root/root      9878 2024-01-31 14:48 ./usr/share/doc/virulencefinder/examples/database/notes.txt.gz
-rw-r--r-- root/root    371633 2024-01-31 14:48 ./usr/share/doc/virulencefinder/examples/database/virulence_ecoli.fsa.gz
-rw-r--r-- root/root      1211 2024-03-09 11:27 ./usr/share/doc/virulencefinder/examples/results.txt.gz
-rw-r--r-- root/root       443 2024-03-09 11:27 ./usr/share/doc/virulencefinder/examples/results_tab.tsv
-rw-r--r-- root/root      1382 2024-01-31 14:48 ./usr/share/doc/virulencefinder/examples/test.fsa
-rw-r--r-- root/root       256 2024-01-31 14:48 ./usr/share/doc/virulencefinder/examples/test.sh
-rw-r--r-- root/root       443 2024-03-09 11:27 ./usr/share/doc/virulencefinder/examples/test_results.tsv
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/doc/virulencefinder/examples/tmp/
-rw-r--r-- root/root      4527 2024-03-09 11:27 ./usr/share/doc/virulencefinder/examples/tmp/out_virulence_ecoli.xml.gz


virulencefinder_2.0.5-1ubuntu1_all.deb
--------------------------------------

 new Debian package, version 2.0.
 size 13702 bytes: control archive=1165 bytes.
     776 bytes,    15 lines      control
     632 bytes,     8 lines      md5sums
     317 bytes,    12 lines   *  postinst             #!/bin/sh
     378 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: virulencefinder
 Version: 2.0.5-1ubuntu1
 Architecture: all
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 47
 Depends: python3:any, python3, python3-tabulate, python3-cgecore, ncbi-blast+, kma
 Section: science
 Priority: optional
 Homepage: https://bitbucket.org/genomicepidemiology/virulencefinder
 Description: identify virulence genes in total or partial sequenced isolates of bacteria
  The VirulenceFinder service contains one Python script
  virulencefinder.py which is the script of the latest version of the
  VirulenceFinder service. VirulenceFinder identifies viruelnce genes in
  total or partial sequenced isolates of bacteria - at the moment only E.
  coli, Enterococcus, S. aureus and Listeria are available.

drwxr-xr-x root/root         0 2024-03-09 11:27 ./
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/bin/
lrwxrwxrwx root/root         0 2024-03-09 11:27 ./usr/bin/virulencefinder.py -> ../share/virulencefinder/virulencefinder.py
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/doc/virulencefinder/
-rw-r--r-- root/root      2469 2024-01-31 14:48 ./usr/share/doc/virulencefinder/README.md.gz
-rw-r--r-- root/root       324 2024-02-18 16:34 ./usr/share/doc/virulencefinder/README.test
-rw-r--r-- root/root      1238 2024-03-09 11:27 ./usr/share/doc/virulencefinder/changelog.Debian.gz
-rw-r--r-- root/root       496 2024-02-18 16:34 ./usr/share/doc/virulencefinder/copyright
-rw-r--r-- root/root       774 2024-02-18 16:34 ./usr/share/doc/virulencefinder/run-unit-test
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/man/
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/man/man1/
-rw-r--r-- root/root       959 2024-03-09 11:27 ./usr/share/man/man1/virulencefinder.py.1.gz
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/python3/
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/python3/runtime.d/
-rwxr-xr-x root/root       165 2024-03-09 11:27 ./usr/share/python3/runtime.d/virulencefinder.rtupdate
drwxr-xr-x root/root         0 2024-03-09 11:27 ./usr/share/virulencefinder/
-rwxr-xr-x root/root     22102 2024-03-09 11:27 ./usr/share/virulencefinder/virulencefinder.py


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not removing build depends: as requested

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: binary
Build-Space: 9116
Build-Time: 5
Distribution: oracular
Host Architecture: amd64
Install-Time: 40
Job: virulencefinder_2.0.5-1ubuntu1.dsc
Machine Architecture: amd64
Package: virulencefinder
Package-Time: 46
Source-Version: 2.0.5-1ubuntu1
Space: 9116
Status: successful
Version: 2.0.5-1ubuntu1
--------------------------------------------------------------------------------
Finished at 2024-05-18T12:46:52Z
Build needed 00:00:46, 9116k disk space
RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28461136
Scanning for processes to kill in build PACKAGEBUILD-28461136