https://launchpad.net/~liushuyu-011/+archive/ubuntu/misc/+build/28050322
RUN: /usr/share/launchpad-buildd/bin/builder-prep 
Kernel version: Linux bos02-s390x-019 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:47:16 UTC 2024 s390x
Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1.
Syncing the system clock with the buildd NTP service...
11 Apr 22:16:00 ntpdate[1859]: adjust time server 10.211.37.1 offset 0.005447 sec
RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-28050322 --image-type chroot /home/buildd/filecache-default/c23f799bb684944311373fdcead5a58221fa6ef7
Creating target for build PACKAGEBUILD-28050322
RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-28050322
Starting target for build PACKAGEBUILD-28050322
RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-28050322 'deb http://ppa.launchpadcontent.net/liushuyu-011/misc/ubuntu noble main' 'deb http://ftpmaster.internal/ubuntu noble main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu noble-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu noble-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu noble-proposed main restricted universe multiverse'
Overriding sources.list in build-PACKAGEBUILD-28050322
RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-28050322
Adding trusted keys to build-PACKAGEBUILD-28050322
pub   rsa4096/327405FE663500EF 2023-01-19 [SC]
      Key fingerprint = 0F73 C580 C3F1 33BB 71BC  DBF4 3274 05FE 6635 00EF
uid                            Launchpad PPA for Liu Shuyu

RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-28050322
Updating target for build PACKAGEBUILD-28050322
Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB]
Get:2 http://ppa.launchpadcontent.net/liushuyu-011/misc/ubuntu noble InRelease [17.8 kB]
Get:3 http://ppa.launchpadcontent.net/liushuyu-011/misc/ubuntu noble/main s390x Packages [16.1 kB]
Get:4 http://ppa.launchpadcontent.net/liushuyu-011/misc/ubuntu noble/main Translation-en [7504 B]
Get:5 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB]
Get:6 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB]
Get:7 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
Get:8 http://ftpmaster.internal/ubuntu noble/main s390x Packages [1340 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main Translation-en [511 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/restricted s390x Packages [4240 B]
Get:11 http://ftpmaster.internal/ubuntu noble/restricted Translation-en [15.0 kB]
Get:12 http://ftpmaster.internal/ubuntu noble/universe s390x Packages [14.5 MB]
Get:13 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6068 kB]
Get:14 http://ftpmaster.internal/ubuntu noble/multiverse s390x Packages [167 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/multiverse Translation-en [115 kB]
Get:16 http://ftpmaster.internal/ubuntu noble-updates/universe s390x Packages [2868 B]
Get:17 http://ftpmaster.internal/ubuntu noble-updates/universe Translation-en [948 B]
Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [338 kB]
Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [144 kB]
Get:20 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1368 B]
Get:21 http://ftpmaster.internal/ubuntu noble-proposed/restricted Translation-en [16.0 kB]
Get:22 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [716 kB]
Get:23 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [279 kB]
Get:24 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [1916 B]
Get:25 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Translation-en [1812 B]
Fetched 24.9 MB in 7s (3378 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
  libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30*
  libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3*
  libtirpc3* usrmerge*
The following NEW packages will be installed:
  cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu g++-13-s390x-linux-gnu
  g++-s390x-linux-gnu gcc-13-s390x-linux-gnu gcc-14-base gcc-s390x-linux-gnu
  libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64
  libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64
  libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5
  perl-modules-5.38
The following packages will be upgraded:
  advancecomp apt apt-utils base-files base-passwd bash bash-completion
  binutils binutils-common binutils-s390x-linux-gnu bsdextrautils bsdutils
  bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n
  debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13
  gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init
  init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8
  libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils
  libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0
  libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12
  libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl
  libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgomp1
  libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2
  libisl23 libitm1 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2
  libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin
  liblockfile1 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6
  libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules
  libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0
  libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1
  libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6
  libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl
  libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libubsan1 libudev1
  libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave
  lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng
  passwd patch perl perl-base pinentry-curses procps psmisc readline-common
  rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv
  sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils
  zlib1g
170 upgraded, 23 newly installed, 14 to remove and 0 not upgraded.
Need to get 107 MB of archives.
After this operation, 76.3 MB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu noble/main s390x libnsl-dev s390x 1.3.0-3build3 [73.1 kB]
Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcrypt-dev s390x 1:4.4.36-4build1 [119 kB]
Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x rpcsvc-proto s390x 1.4.2-0ubuntu7 [66.4 kB]
Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libc6-dev s390x 2.39-0ubuntu8 [1629 kB]
Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libc-dev-bin s390x 2.39-0ubuntu8 [20.2 kB]
Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-common all 1.3.4+ds-1.1build1 [8094 B]
Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc-dev s390x 1.3.4+ds-1.1build1 [197 kB]
Get:8 http://ftpmaster.internal/ubuntu noble/universe s390x libnss-nisplus s390x 1.3-5build1 [23.8 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libtirpc3t64 s390x 1.3.4+ds-1.1build1 [85.9 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libgssapi-krb5-2 s390x 1.20.1-6ubuntu2 [149 kB]
Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libkrb5-3 s390x 1.20.1-6ubuntu2 [360 kB]
Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libk5crypto3 s390x 1.20.1-6ubuntu2 [90.3 kB]
Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libkrb5support0 s390x 1.20.1-6ubuntu2 [34.7 kB]
Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libacl1 s390x 2.3.2-1build1 [18.0 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libapparmor1 s390x 4.0.0-beta3-0ubuntu3 [50.8 kB]
Get:16 http://ftpmaster.internal/ubuntu noble/main s390x libaudit-common all 1:3.1.2-2.1build1 [5736 B]
Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libcap-ng0 s390x 0.8.4-2build2 [15.8 kB]
Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libaudit1 s390x 1:3.1.2-2.1build1 [48.9 kB]
Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libblkid1 s390x 2.39.3-9ubuntu6 [128 kB]
Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcap2 s390x 1:2.66-5ubuntu2 [31.8 kB]
Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcrypt1 s390x 1:4.4.36-4build1 [88.9 kB]
Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgpg-error-l10n all 1.47-3build2 [8064 B]
Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgpg-error0 s390x 1.47-3build2 [75.6 kB]
Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgcrypt20 s390x 1.10.3-2build1 [501 kB]
Get:25 http://ftpmaster.internal/ubuntu noble/main s390x liblzma5 s390x 5.6.1+really5.4.5-1 [135 kB]
Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libzstd1 s390x 1.5.5+dfsg2-2build1 [341 kB]
Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libkmod2 s390x 31+20240202-2ubuntu6 [56.4 kB]
Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main s390x liblz4-1 s390x 1.9.4-1build1 [79.4 kB]
Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpcre2-8-0 s390x 10.42-4ubuntu2 [245 kB]
Get:30 http://ftpmaster.internal/ubuntu noble/main s390x libselinux1 s390x 3.5-2ubuntu2 [84.8 kB]
Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libmount1 s390x 2.39.3-9ubuntu6 [138 kB]
Get:32 http://ftpmaster.internal/ubuntu noble/main s390x perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB]
Get:33 http://ftpmaster.internal/ubuntu noble/main s390x libdb5.3t64 s390x 5.3.28+dfsg2-6build1 [763 kB]
Get:34 http://ftpmaster.internal/ubuntu noble/main s390x libgdbm6t64 s390x 1.23-5.1build1 [36.5 kB]
Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libgdbm-compat4t64 s390x 1.23-5.1build1 [6890 B]
Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libperl5.38t64 s390x 5.38.2-3.2build2 [5006 kB]
Get:37 http://ftpmaster.internal/ubuntu noble/main s390x perl s390x 5.38.2-3.2build2 [231 kB]
Get:38 http://ftpmaster.internal/ubuntu noble/main s390x perl-base s390x 5.38.2-3.2build2 [1968 kB]
Get:39 http://ftpmaster.internal/ubuntu noble/main s390x liblocale-gettext-perl s390x 1.07-6ubuntu5 [15.8 kB]
Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libtext-iconv-perl s390x 1.7-8build3 [13.8 kB]
Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libtext-charwidth-perl s390x 0.04-11build3 [9518 B]
Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libc6 s390x 2.39-0ubuntu8 [2847 kB]
Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libc-bin s390x 2.39-0ubuntu8 [654 kB]
Get:44 http://ftpmaster.internal/ubuntu noble/main s390x openssl s390x 3.0.13-0ubuntu3 [1009 kB]
Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libsystemd-shared s390x 255.4-1ubuntu7 [2131 kB]
Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcryptsetup12 s390x 2:2.7.0-1ubuntu4 [264 kB]
Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libssl3t64 s390x 3.0.13-0ubuntu3 [1675 kB]
Get:48 http://ftpmaster.internal/ubuntu noble/main s390x systemd-dev all 255.4-1ubuntu7 [104 kB]
Get:49 http://ftpmaster.internal/ubuntu noble/main s390x systemd-sysv s390x 255.4-1ubuntu7 [11.9 kB]
Get:50 http://ftpmaster.internal/ubuntu noble/main s390x systemd s390x 255.4-1ubuntu7 [3534 kB]
Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libsystemd0 s390x 255.4-1ubuntu7 [443 kB]
Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libpam-modules-bin s390x 1.5.3-5ubuntu4 [57.2 kB]
Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libpam-modules s390x 1.5.3-5ubuntu4 [289 kB]
Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libnettle8t64 s390x 3.9.1-2.2build1 [210 kB]
Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libhogweed6t64 s390x 3.9.1-2.2build1 [204 kB]
Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libp11-kit0 s390x 0.25.3-4ubuntu2 [320 kB]
Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libunistring5 s390x 1.1-2build1 [550 kB]
Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libgnutls30t64 s390x 3.8.3-1.1ubuntu3 [944 kB]
Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libapt-pkg6.0t64 s390x 2.7.14build2 [1014 kB]
Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main s390x bzip2 s390x 1.0.8-5.1 [35.5 kB]
Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libbz2-1.0 s390x 1.0.8-5.1 [40.0 kB]
Get:62 http://ftpmaster.internal/ubuntu noble/main s390x gcc-14-base s390x 14-20240330-1ubuntu2 [47.4 kB]
Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-s1 s390x 14-20240330-1ubuntu2 [35.9 kB]
Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++6 s390x 14-20240330-1ubuntu2 [905 kB]
Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libudev1 s390x 255.4-1ubuntu7 [178 kB]
Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libxxhash0 s390x 0.8.2-2build1 [24.1 kB]
Get:67 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g s390x 1:1.3.dfsg-3.1ubuntu2 [75.9 kB]
Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libffi8 s390x 3.4.6-1build1 [23.1 kB]
Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libidn2-0 s390x 2.3.7-2build1 [67.3 kB]
Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtasn1-6 s390x 4.19.0-3build1 [48.5 kB]
Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libdebconfclient0 s390x 0.271ubuntu3 [11.4 kB]
Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main s390x base-passwd s390x 3.6.3build1 [51.5 kB]
Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libassuan0 s390x 2.5.6-1build1 [38.3 kB]
Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libsqlite3-0 s390x 3.45.1-1ubuntu2 [747 kB]
Get:75 http://ftpmaster.internal/ubuntu noble/main s390x gpg s390x 2.4.4-2ubuntu17 [589 kB]
Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libreadline8t64 s390x 8.2-4build1 [171 kB]
Get:77 http://ftpmaster.internal/ubuntu noble/main s390x readline-common all 8.2-4build1 [56.5 kB]
Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libncursesw6 s390x 6.4+20240113-1ubuntu2 [161 kB]
Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtinfo6 s390x 6.4+20240113-1ubuntu2 [117 kB]
Get:80 http://ftpmaster.internal/ubuntu noble/main s390x gpg-agent s390x 2.4.4-2ubuntu17 [240 kB]
Get:81 http://ftpmaster.internal/ubuntu noble/main s390x gpgconf s390x 2.4.4-2ubuntu17 [111 kB]
Get:82 http://ftpmaster.internal/ubuntu noble/main s390x pinentry-curses s390x 1.2.1-3ubuntu5 [37.6 kB]
Get:83 http://ftpmaster.internal/ubuntu noble/main s390x init-system-helpers all 1.66ubuntu1 [39.4 kB]
Get:84 http://ftpmaster.internal/ubuntu noble/main s390x libnpth0t64 s390x 1.6-3.1build1 [8204 B]
Get:85 http://ftpmaster.internal/ubuntu noble/main s390x gpgv s390x 2.4.4-2ubuntu17 [165 kB]
Get:86 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-keyring all 2023.11.28.1 [11.1 kB]
Get:87 http://ftpmaster.internal/ubuntu noble/main s390x libseccomp2 s390x 2.5.5-1ubuntu3 [53.4 kB]
Get:88 http://ftpmaster.internal/ubuntu noble/main s390x apt-utils s390x 2.7.14build2 [214 kB]
Get:89 http://ftpmaster.internal/ubuntu noble/main s390x apt s390x 2.7.14build2 [1390 kB]
Get:90 http://ftpmaster.internal/ubuntu noble/main s390x debconf-i18n all 1.5.86 [205 kB]
Get:91 http://ftpmaster.internal/ubuntu noble/main s390x debconf all 1.5.86 [124 kB]
Get:92 http://ftpmaster.internal/ubuntu noble/main s390x libpam0g s390x 1.5.3-5ubuntu4 [69.7 kB]
Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libargon2-1 s390x 0~20190702+dfsg-4build1 [54.1 kB]
Get:94 http://ftpmaster.internal/ubuntu noble/main s390x libdevmapper1.02.1 s390x 2:1.02.185-3ubuntu3 [142 kB]
Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libjson-c5 s390x 0.17-1build1 [37.2 kB]
Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libuuid1 s390x 2.39.3-9ubuntu6 [35.9 kB]
Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libfdisk1 s390x 2.39.3-9ubuntu6 [151 kB]
Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main s390x mount s390x 2.39.3-9ubuntu6 [119 kB]
Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcom-err2 s390x 1.47.0-2.4~exp1ubuntu4 [22.9 kB]
Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libkeyutils1 s390x 1.6.3-3build1 [9556 B]
Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libnsl2 s390x 1.3.0-3build3 [44.1 kB]
Get:102 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-22.22 [1592 kB]
Get:103 http://ftpmaster.internal/ubuntu noble/main s390x base-files s390x 13ubuntu9 [73.7 kB]
Get:104 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.17build1 [90.2 kB]
Get:105 http://ftpmaster.internal/ubuntu noble/main s390x bash s390x 5.2.21-2ubuntu4 [845 kB]
Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main s390x bsdutils s390x 1:2.39.3-9ubuntu6 [96.5 kB]
Get:107 http://ftpmaster.internal/ubuntu noble/main s390x coreutils s390x 9.4-3ubuntu6 [1483 kB]
Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main s390x tar s390x 1.35+dfsg-3build1 [269 kB]
Get:109 http://ftpmaster.internal/ubuntu noble/main s390x dpkg s390x 1.22.6ubuntu6 [1278 kB]
Get:110 http://ftpmaster.internal/ubuntu noble/main s390x dash s390x 0.5.12-6ubuntu5 [95.0 kB]
Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main s390x diffutils s390x 1:3.10-1build1 [188 kB]
Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main s390x findutils s390x 4.9.0-5build1 [305 kB]
Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main s390x grep s390x 3.11-4build1 [173 kB]
Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gzip s390x 1.12-1ubuntu3 [107 kB]
Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main s390x hostname s390x 3.23+nmu2ubuntu2 [11.2 kB]
Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main s390x login s390x 1:4.13+dfsg1-4ubuntu3 [202 kB]
Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main s390x ncurses-bin s390x 6.4+20240113-1ubuntu2 [198 kB]
Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main s390x sed s390x 4.9-2build1 [198 kB]
Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main s390x util-linux s390x 2.39.3-9ubuntu6 [1142 kB]
Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main s390x ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB]
Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main s390x sysvinit-utils s390x 3.08-6ubuntu3 [34.8 kB]
Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main s390x logsave s390x 1.47.0-2.4~exp1ubuntu4 [22.6 kB]
Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libext2fs2t64 s390x 1.47.0-2.4~exp1ubuntu4 [234 kB]
Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main s390x e2fsprogs s390x 1.47.0-2.4~exp1ubuntu4 [614 kB]
Get:125 http://ftpmaster.internal/ubuntu noble/main s390x optipng s390x 0.7.8+ds-1build2 [114 kB]
Get:126 http://ftpmaster.internal/ubuntu noble/main s390x libpng16-16t64 s390x 1.6.43-5build1 [200 kB]
Get:127 http://ftpmaster.internal/ubuntu noble/main s390x init s390x 1.66ubuntu1 [6188 B]
Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsmartcols1 s390x 2.39.3-9ubuntu6 [68.2 kB]
Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main s390x uuid-runtime s390x 2.39.3-9ubuntu6 [33.4 kB]
Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libattr1 s390x 1:2.5.2-1build1 [11.7 kB]
Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libmd0 s390x 1.1.0-2build1 [24.6 kB]
Get:132 http://ftpmaster.internal/ubuntu noble/main s390x libpam-runtime all 1.5.3-5ubuntu4 [40.8 kB]
Get:133 http://ftpmaster.internal/ubuntu noble/main s390x libsemanage-common all 3.5-1build5 [10.1 kB]
Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsepol2 s390x 3.5-2build1 [315 kB]
Get:135 http://ftpmaster.internal/ubuntu noble/main s390x libsemanage2 s390x 3.5-1build5 [96.8 kB]
Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main s390x passwd s390x 1:4.13+dfsg1-4ubuntu3 [857 kB]
Get:137 http://ftpmaster.internal/ubuntu noble/main s390x libproc2-0 s390x 2:4.0.4-4ubuntu3 [59.8 kB]
Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libss2 s390x 1.47.0-2.4~exp1ubuntu4 [17.2 kB]
Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main s390x mawk s390x 1.3.4.20240123-1build1 [133 kB]
Get:140 http://ftpmaster.internal/ubuntu noble/main s390x procps s390x 2:4.0.4-4ubuntu3 [724 kB]
Get:141 http://ftpmaster.internal/ubuntu noble/main s390x sensible-utils all 0.0.22 [22.5 kB]
Get:142 http://ftpmaster.internal/ubuntu noble/main s390x ca-certificates all 20240203 [159 kB]
Get:143 http://ftpmaster.internal/ubuntu noble/main s390x krb5-locales all 1.20.1-6ubuntu2 [13.8 kB]
Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main s390x tzdata all 2024a-2ubuntu1 [273 kB]
Get:145 http://ftpmaster.internal/ubuntu noble/main s390x bash-completion all 1:2.11-8 [180 kB]
Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main s390x bsdextrautils s390x 2.39.3-9ubuntu6 [76.3 kB]
Get:147 http://ftpmaster.internal/ubuntu noble/main s390x libgpm2 s390x 1.20.7-11 [14.7 kB]
Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libip4tc2 s390x 1.8.10-3ubuntu2 [24.2 kB]
Get:149 http://ftpmaster.internal/ubuntu noble/main s390x libjansson4 s390x 2.14-2build2 [33.2 kB]
Get:150 http://ftpmaster.internal/ubuntu noble/main s390x psmisc s390x 23.7-1build1 [178 kB]
Get:151 http://ftpmaster.internal/ubuntu noble/main s390x xz-utils s390x 5.6.1+really5.4.5-1 [269 kB]
Get:152 http://ftpmaster.internal/ubuntu noble/main s390x advancecomp s390x 2.5-1build1 [205 kB]
Get:153 http://ftpmaster.internal/ubuntu noble/main s390x libctf0 s390x 2.42-4ubuntu2 [98.4 kB]
Get:154 http://ftpmaster.internal/ubuntu noble/main s390x libctf-nobfd0 s390x 2.42-4ubuntu2 [100 kB]
Get:155 http://ftpmaster.internal/ubuntu noble/main s390x binutils-s390x-linux-gnu s390x 2.42-4ubuntu2 [2270 kB]
Get:156 http://ftpmaster.internal/ubuntu noble/main s390x libbinutils s390x 2.42-4ubuntu2 [479 kB]
Get:157 http://ftpmaster.internal/ubuntu noble/main s390x binutils s390x 2.42-4ubuntu2 [3042 B]
Get:158 http://ftpmaster.internal/ubuntu noble/main s390x binutils-common s390x 2.42-4ubuntu2 [217 kB]
Get:159 http://ftpmaster.internal/ubuntu noble/main s390x libsframe1 s390x 2.42-4ubuntu2 [14.2 kB]
Get:160 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240330-1ubuntu2 [1186 kB]
Get:161 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240330-1ubuntu2 [151 kB]
Get:162 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240330-1ubuntu2 [31.1 kB]
Get:163 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240330-1ubuntu2 [9386 B]
Get:164 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240330-1ubuntu2 [2994 kB]
Get:165 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-23ubuntu3 [14.5 kB]
Get:166 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-23ubuntu3 [469 kB]
Get:167 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-23ubuntu3 [2494 kB]
Get:168 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-23ubuntu3 [1003 kB]
Get:169 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240330-1ubuntu2 [49.8 kB]
Get:170 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-23ubuntu3 [1026 B]
Get:171 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-base s390x 13.2.0-23ubuntu3 [48.6 kB]
Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libisl23 s390x 0.26-3build1 [713 kB]
Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libmpfr6 s390x 4.2.1-1build1 [322 kB]
Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libmpc3 s390x 1.3.1-1build1 [58.4 kB]
Get:175 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [19.1 MB]
Get:176 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [11.3 MB]
Get:177 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [9936 kB]
Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main s390x g++ s390x 4:13.2.0-7ubuntu2 [1096 B]
Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gcc s390x 4:13.2.0-7ubuntu2 [5008 B]
Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main s390x cpp s390x 4:13.2.0-7ubuntu2 [22.4 kB]
Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu2 [5404 B]
Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu2 [1202 B]
Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu2 [956 B]
Get:184 http://ftpmaster.internal/ubuntu noble/main s390x dpkg-dev all 1.22.6ubuntu6 [1074 kB]
Get:185 http://ftpmaster.internal/ubuntu noble/main s390x libdpkg-perl all 1.22.6ubuntu6 [268 kB]
Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main s390x patch s390x 2.7.6-7build3 [113 kB]
Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main s390x make s390x 4.3-4.1build2 [196 kB]
Get:188 http://ftpmaster.internal/ubuntu noble/main s390x lto-disabled-list all 47 [12.4 kB]
Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libfakeroot s390x 1.33-1build1 [32.0 kB]
Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main s390x fakeroot s390x 1.33-1build1 [67.6 kB]
Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main s390x liblockfile-bin s390x 1.17-1build3 [11.6 kB]
Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main s390x liblockfile1 s390x 1.17-1build3 [7028 B]
Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main s390x lockfile-progs s390x 0.1.19build2 [8406 B]
Preconfiguring packages ...
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(Reading database ... 13395 files and directories currently installed.)
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Unpacking libnss-nisplus:s390x (1.3-5build1) over (1.3-0ubuntu6) ...
dpkg: libtirpc3:s390x: dependency problems, but removing anyway as you requested:
 libnsl2:s390x depends on libtirpc3 (>= 1.0.2).

(Reading database ... 13398 files and directories currently installed.)
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Selecting previously unselected package libtirpc3t64:s390x.
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Adding 'diversion of /lib/s390x-linux-gnu/libtirpc.so.3 to /lib/s390x-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/s390x-linux-gnu/libtirpc.so.3.0.0 to /lib/s390x-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:s390x (1.3.4+ds-1.1build1) ...
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Setting up libacl1:s390x (2.3.2-1build1) ...
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Setting up libcap-ng0:s390x (0.8.4-2build2) ...
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Setting up libaudit1:s390x (1:3.1.2-2.1build1) ...
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Setting up libcrypt1:s390x (1:4.4.36-4build1) ...
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Setting up libgpg-error0:s390x (1.47-3build2) ...
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Unpacking libgcrypt20:s390x (1.10.3-2build1) over (1.10.2-3ubuntu1) ...
Setting up libgcrypt20:s390x (1.10.3-2build1) ...
(Reading database ... 13403 files and directories currently installed.)
Preparing to unpack .../liblzma5_5.6.1+really5.4.5-1_s390x.deb ...
Unpacking liblzma5:s390x (5.6.1+really5.4.5-1) over (5.4.1-0.2) ...
Setting up liblzma5:s390x (5.6.1+really5.4.5-1) ...
(Reading database ... 13403 files and directories currently installed.)
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Setting up libzstd1:s390x (1.5.5+dfsg2-2build1) ...
(Reading database ... 13403 files and directories currently installed.)
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Unpacking libkmod2:s390x (31+20240202-2ubuntu6) over (30+20230519-1ubuntu3) ...
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Unpacking liblz4-1:s390x (1.9.4-1build1) over (1.9.4-1) ...
Setting up liblz4-1:s390x (1.9.4-1build1) ...
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Setting up libpcre2-8-0:s390x (10.42-4ubuntu2) ...
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Preparing to unpack .../libselinux1_3.5-2ubuntu2_s390x.deb ...
Unpacking libselinux1:s390x (3.5-2ubuntu2) over (3.5-1) ...
Setting up libselinux1:s390x (3.5-2ubuntu2) ...
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Preparing to unpack .../libmount1_2.39.3-9ubuntu6_s390x.deb ...
Unpacking libmount1:s390x (2.39.3-9ubuntu6) over (2.39.1-4ubuntu2) ...
Setting up libmount1:s390x (2.39.3-9ubuntu6) ...
(Reading database ... 13404 files and directories currently installed.)
Preparing to unpack .../perl_5.38.2-3.2build2_s390x.deb ...
Unpacking perl (5.38.2-3.2build2) over (5.36.0-9ubuntu1) ...
Selecting previously unselected package perl-modules-5.38.
Preparing to unpack .../perl-modules-5.38_5.38.2-3.2build2_all.deb ...
Unpacking perl-modules-5.38 (5.38.2-3.2build2) ...
dpkg: libdb5.3:s390x: dependency problems, but removing anyway as you requested:
 libperl5.36:s390x depends on libdb5.3.
 libpam-modules:s390x depends on libdb5.3.
 apt-utils depends on libdb5.3.

(Reading database ... 14816 files and directories currently installed.)
Removing libdb5.3:s390x (5.3.28+dfsg2-2) ...
Selecting previously unselected package libdb5.3t64:s390x.
(Reading database ... 14810 files and directories currently installed.)
Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6build1_s390x.deb ...
Unpacking libdb5.3t64:s390x (5.3.28+dfsg2-6build1) ...
dpkg: libgdbm6:s390x: dependency problems, but removing anyway as you requested:
 libperl5.36:s390x depends on libgdbm6 (>= 1.21).
 libgdbm-compat4:s390x depends on libgdbm6 (>= 1.16).

(Reading database ... 14816 files and directories currently installed.)
Removing libgdbm6:s390x (1.23-3) ...
Selecting previously unselected package libgdbm6t64:s390x.
(Reading database ... 14811 files and directories currently installed.)
Preparing to unpack .../libgdbm6t64_1.23-5.1build1_s390x.deb ...
Unpacking libgdbm6t64:s390x (1.23-5.1build1) ...
dpkg: libgdbm-compat4:s390x: dependency problems, but removing anyway as you requested:
 libperl5.36:s390x depends on libgdbm-compat4 (>= 1.18-3).

(Reading database ... 14817 files and directories currently installed.)
Removing libgdbm-compat4:s390x (1.23-3) ...
Selecting previously unselected package libgdbm-compat4t64:s390x.
(Reading database ... 14812 files and directories currently installed.)
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Unpacking libgdbm-compat4t64:s390x (1.23-5.1build1) ...
Selecting previously unselected package libperl5.38t64:s390x.
Preparing to unpack .../libperl5.38t64_5.38.2-3.2build2_s390x.deb ...
Unpacking libperl5.38t64:s390x (5.38.2-3.2build2) ...
Preparing to unpack .../perl-base_5.38.2-3.2build2_s390x.deb ...
Unpacking perl-base (5.38.2-3.2build2) over (5.36.0-9ubuntu1) ...
Setting up perl-base (5.38.2-3.2build2) ...
(Reading database ... 15343 files and directories currently installed.)
Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu5_s390x.deb ...
Unpacking liblocale-gettext-perl (1.07-6ubuntu5) over (1.07-6) ...
Preparing to unpack .../libtext-iconv-perl_1.7-8build3_s390x.deb ...
Unpacking libtext-iconv-perl:s390x (1.7-8build3) over (1.7-8) ...
Preparing to unpack .../libtext-charwidth-perl_0.04-11build3_s390x.deb ...
Unpacking libtext-charwidth-perl:s390x (0.04-11build3) over (0.04-11) ...
Preparing to unpack .../libc6_2.39-0ubuntu8_s390x.deb ...
Unpacking libc6:s390x (2.39-0ubuntu8) over (2.38-1ubuntu6) ...
Setting up libc6:s390x (2.39-0ubuntu8) ...
(Reading database ... 15345 files and directories currently installed.)
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Unpacking libc-bin (2.39-0ubuntu8) over (2.38-1ubuntu6) ...
Setting up libc-bin (2.39-0ubuntu8) ...
(Reading database ... 15345 files and directories currently installed.)
Preparing to unpack .../openssl_3.0.13-0ubuntu3_s390x.deb ...
Unpacking openssl (3.0.13-0ubuntu3) over (3.0.10-1ubuntu2) ...
Preparing to unpack .../libsystemd-shared_255.4-1ubuntu7_s390x.deb ...
Unpacking libsystemd-shared:s390x (255.4-1ubuntu7) over (253.5-1ubuntu6) ...
Preparing to unpack .../libcryptsetup12_2%3a2.7.0-1ubuntu4_s390x.deb ...
Unpacking libcryptsetup12:s390x (2:2.7.0-1ubuntu4) over (2:2.6.1-4ubuntu3) ...
dpkg: libssl3:s390x: dependency problems, but removing anyway as you requested:
 systemd depends on libssl3 (>= 3.0.0).

(Reading database ... 15344 files and directories currently installed.)
Removing libssl3:s390x (3.0.10-1ubuntu2) ...
Selecting previously unselected package libssl3t64:s390x.
(Reading database ... 15333 files and directories currently installed.)
Preparing to unpack .../libssl3t64_3.0.13-0ubuntu3_s390x.deb ...
Unpacking libssl3t64:s390x (3.0.13-0ubuntu3) ...
Setting up libssl3t64:s390x (3.0.13-0ubuntu3) ...
(Reading database ... 15346 files and directories currently installed.)
Preparing to unpack .../systemd-dev_255.4-1ubuntu7_all.deb ...
Unpacking systemd-dev (255.4-1ubuntu7) over (253.5-1ubuntu6) ...
Preparing to unpack .../systemd-sysv_255.4-1ubuntu7_s390x.deb ...
Unpacking systemd-sysv (255.4-1ubuntu7) over (253.5-1ubuntu6) ...
Preparing to unpack .../systemd_255.4-1ubuntu7_s390x.deb ...
Unpacking systemd (255.4-1ubuntu7) over (253.5-1ubuntu6) ...
dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty
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dpkg: libreadline8:s390x: dependency problems, but removing anyway as you requested:
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dpkg: libext2fs2:s390x: dependency problems, but removing anyway as you requested:
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Adding 'diversion of /lib/s390x-linux-gnu/libe2p.so.2.3 to /lib/s390x-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
Adding 'diversion of /lib/s390x-linux-gnu/libext2fs.so.2 to /lib/s390x-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64'
Adding 'diversion of /lib/s390x-linux-gnu/libext2fs.so.2.4 to /lib/s390x-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
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Current default time zone: 'Etc/UTC'
Local time is now:      Thu Apr 11 22:16:35 UTC 2024.
Universal Time is now:  Thu Apr 11 22:16:35 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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Running in chroot, ignoring request.
invoke-rc.d: policy-rc.d denied execution of restart.
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rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL
14 added, 5 removed; done.
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Setting up g++ (4:13.2.0-7ubuntu2) ...
Setting up libnsl-dev:s390x (1.3.0-3build3) ...
Processing triggers for libc-bin (2.39-0ubuntu8) ...
Processing triggers for debianutils (5.17build1) ...
(Reading database ... 15545 files and directories currently installed.)
Purging configuration files for libssl3:s390x (3.0.10-1ubuntu2) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
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Running hooks in /etc/ca-certificates/update.d...
done.
RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28050322 s390x noble -c chroot:build-PACKAGEBUILD-28050322 --arch=s390x --dist=noble --nolog prime-phylo_1.0.11-10ubuntu1.dsc
Initiating build PACKAGEBUILD-28050322 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:47:16 UTC 2024 s390x
sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-s390x-019.buildd

+==============================================================================+
| prime-phylo 1.0.11-10ubuntu1 (s390x)         Thu, 11 Apr 2024 22:16:39 +0000 |
+==============================================================================+

Package: prime-phylo
Version: 1.0.11-10ubuntu1
Source Version: 1.0.11-10ubuntu1
Distribution: noble
Machine Architecture: s390x
Host Architecture: s390x
Build Architecture: s390x
Build Type: any

I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28050322/chroot-autobuild' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/prime-phylo-NjoGn4/resolver-Ha6n8C' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

prime-phylo_1.0.11-10ubuntu1.dsc exists in .; copying to chroot
I: NOTICE: Log filtering will replace 'build/prime-phylo-NjoGn4/prime-phylo-1.0.11' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/prime-phylo-NjoGn4' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [447 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [532 B]
Fetched 1936 B in 0s (180 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  apt-utils bash-completion ca-certificates debconf-i18n krb5-locales
  libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev
  libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl
  libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev
  libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bison cmake cmake-data debhelper
  debugedit dh-autoreconf dh-strip-nondeterminism dwz file flex gengetopt
  gettext gettext-base gfortran gfortran-13 gfortran-13-s390x-linux-gnu
  gfortran-s390x-linux-gnu groff-base ibverbs-providers icu-devtools
  intltool-debian libarchive-zip-perl libarchive13t64 libblas-dev libblas3
  libboost-dev libboost-mpi-dev libboost-mpi1.83-dev libboost-mpi1.83.0
  libboost-serialization-dev libboost-serialization1.83-dev
  libboost-serialization1.83.0 libboost1.83-dev libbrotli1 libbsd0 libcbor0.10
  libcurl4t64 libdebhelper-perl libdw1t64 libedit2 libelf1t64
  libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev
  libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64
  libexpat1 libfabric1 libfido2-1 libfile-stripnondeterminism-perl
  libgfortran-13-dev libgfortran5 libhwloc-dev libhwloc-plugins libhwloc15
  libibverbs-dev libibverbs1 libicu-dev libicu74 libjs-jquery libjs-jquery-ui
  libjsoncpp25 liblapack-dev liblapack3 libldap2 libltdl-dev libltdl7
  libmagic-mgc libmagic1t64 libmunge2 libnghttp2-14 libnl-3-200 libnl-3-dev
  libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev
  libopenmpi3t64 libpciaccess0 libpipeline1 libpmix-dev libpmix2t64 libpsl5t64
  librdmacm1t64 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4
  libsub-override-perl libtool libuchardet0 libuv1t64 libx11-6 libx11-data
  libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxml2-dev libxnvctrl0 m4 man-db
  mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client
  po-debconf zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc bison-doc cmake-doc cmake-format
  elpa-cmake-mode ninja-build dh-make flex-doc gettext-doc libasprintf-dev
  libgettextpo-dev gfortran-multilib gfortran-doc gfortran-13-multilib
  gfortran-13-doc libcoarrays-dev groff lrzip liblapack-doc libboost-doc
  libboost-graph1.83-dev libboost1.83-doc libboost-atomic1.83-dev
  libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
  libboost-contract1.83-dev libboost-coroutine1.83-dev
  libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
  libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
  libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev
  libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev
  libboost-nowide1.83-dev libboost-numpy1.83-dev
  libboost-program-options1.83-dev libboost-python1.83-dev
  libboost-random1.83-dev libboost-regex1.83-dev libboost-stacktrace1.83-dev
  libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
  libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
  libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
  icu-doc libjs-jquery-ui-docs libtool-doc openmpi-doc pciutils gcj-jdk
  pkg-config m4-doc apparmor less www-browser opencl-icd keychain libpam-ssh
  monkeysphere ssh-askpass libmail-box-perl
Recommended packages:
  libfl-dev curl | wget | lynx libarchive-cpio-perl javascript-common
  libldap-common libcoarrays-openmpi-dev publicsuffix libsasl2-modules xauth
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bison cmake cmake-data debhelper
  debugedit dh-autoreconf dh-strip-nondeterminism dwz file flex gengetopt
  gettext gettext-base gfortran gfortran-13 gfortran-13-s390x-linux-gnu
  gfortran-s390x-linux-gnu groff-base ibverbs-providers icu-devtools
  intltool-debian libarchive-zip-perl libarchive13t64 libblas-dev libblas3
  libboost-dev libboost-mpi-dev libboost-mpi1.83-dev libboost-mpi1.83.0
  libboost-serialization-dev libboost-serialization1.83-dev
  libboost-serialization1.83.0 libboost1.83-dev libbrotli1 libbsd0 libcbor0.10
  libcurl4t64 libdebhelper-perl libdw1t64 libedit2 libelf1t64
  libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev
  libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64
  libexpat1 libfabric1 libfido2-1 libfile-stripnondeterminism-perl
  libgfortran-13-dev libgfortran5 libhwloc-dev libhwloc-plugins libhwloc15
  libibverbs-dev libibverbs1 libicu-dev libicu74 libjs-jquery libjs-jquery-ui
  libjsoncpp25 liblapack-dev liblapack3 libldap2 libltdl-dev libltdl7
  libmagic-mgc libmagic1t64 libmunge2 libnghttp2-14 libnl-3-200 libnl-3-dev
  libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev
  libopenmpi3t64 libpciaccess0 libpipeline1 libpmix-dev libpmix2t64 libpsl5t64
  librdmacm1t64 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4
  libsub-override-perl libtool libuchardet0 libuv1t64 libx11-6 libx11-data
  libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxml2-dev libxnvctrl0 m4 man-db
  mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client
  po-debconf sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 118 newly installed, 0 to remove and 0 not upgraded.
Need to get 98.3 MB of archives.
After this operation, 484 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [746 B]
Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x m4 s390x 1.4.19-4build1 [256 kB]
Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x flex s390x 2.6.4-8.2build1 [311 kB]
Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libbsd0 s390x 0.12.1-1build1 [46.8 kB]
Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libelf1t64 s390x 0.190-1.1build4 [69.7 kB]
Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libexpat1 s390x 2.6.1-2build1 [94.4 kB]
Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libicu74 s390x 74.2-1ubuntu3 [10.9 MB]
Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libxml2 s390x 2.9.14+dfsg-1.3ubuntu3 [818 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libmagic-mgc s390x 1:5.45-3build1 [305 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libmagic1t64 s390x 1:5.45-3build1 [93.2 kB]
Get:11 http://ftpmaster.internal/ubuntu noble/main s390x file s390x 1:5.45-3build1 [22.2 kB]
Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gettext-base s390x 0.21-14ubuntu2 [39.4 kB]
Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libuchardet0 s390x 0.0.8-1build1 [76.7 kB]
Get:14 http://ftpmaster.internal/ubuntu noble/main s390x groff-base s390x 1.23.0-3build2 [1049 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libcbor0.10 s390x 0.10.2-1.2ubuntu2 [26.3 kB]
Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libedit2 s390x 3.1-20230828-1build1 [107 kB]
Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libfido2-1 s390x 1.14.0-1build2 [81.0 kB]
Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libnghttp2-14 s390x 1.59.0-1build2 [77.8 kB]
Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnuma1 s390x 2.0.18-1build1 [25.1 kB]
Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libpipeline1 s390x 1.5.7-2 [25.0 kB]
Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libpsl5t64 s390x 0.21.2-1.1build1 [57.7 kB]
Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libuv1t64 s390x 1.48.0-1.1build1 [101 kB]
Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libxau6 s390x 1:1.0.9-1build6 [7336 B]
Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libxdmcp6 s390x 1:1.1.3-0ubuntu6 [10.8 kB]
Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libxcb1 s390x 1.15-1 [48.3 kB]
Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libx11-data all 2:1.8.7-1build1 [115 kB]
Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libx11-6 s390x 2:1.8.7-1build1 [676 kB]
Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libxext6 s390x 2:1.3.4-1build2 [32.5 kB]
Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main s390x man-db s390x 2.12.0-4build2 [1253 kB]
Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssh-client s390x 1:9.6p1-3ubuntu13 [935 kB]
Get:31 http://ftpmaster.internal/ubuntu noble/main s390x autoconf all 2.71-3 [339 kB]
Get:32 http://ftpmaster.internal/ubuntu noble/main s390x autotools-dev all 20220109.1 [44.9 kB]
Get:33 http://ftpmaster.internal/ubuntu noble/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB]
Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main s390x autopoint all 0.21-14ubuntu2 [422 kB]
Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main s390x bison s390x 2:3.8.2+dfsg-1build2 [768 kB]
Get:36 http://ftpmaster.internal/ubuntu noble/main s390x libarchive13t64 s390x 3.7.2-2 [419 kB]
Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libbrotli1 s390x 1.1.0-2build2 [375 kB]
Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-modules-db s390x 2.1.28+dfsg1-5ubuntu3 [21.3 kB]
Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-2 s390x 2.1.28+dfsg1-5ubuntu3 [57.8 kB]
Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libldap2 s390x 2.6.7+dfsg-1~exp1ubuntu8 [203 kB]
Get:41 http://ftpmaster.internal/ubuntu noble/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2build7 [58.4 kB]
Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libssh-4 s390x 0.10.6-2build2 [189 kB]
Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu10 [363 kB]
Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libjsoncpp25 s390x 1.9.5-6build1 [82.5 kB]
Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main s390x librhash0 s390x 1.4.3-3build1 [133 kB]
Get:46 http://ftpmaster.internal/ubuntu noble/main s390x cmake-data all 3.28.3-1build6 [2155 kB]
Get:47 http://ftpmaster.internal/ubuntu noble/main s390x cmake s390x 3.28.3-1build6 [11.7 MB]
Get:48 http://ftpmaster.internal/ubuntu noble/main s390x libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB]
Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtool all 2.4.7-7build1 [166 kB]
Get:50 http://ftpmaster.internal/ubuntu noble/main s390x dh-autoreconf all 20 [16.1 kB]
Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB]
Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libsub-override-perl all 0.10-1 [10.0 kB]
Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB]
Get:54 http://ftpmaster.internal/ubuntu noble/main s390x dh-strip-nondeterminism all 1.13.1-1 [5362 B]
Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libdw1t64 s390x 0.190-1.1build4 [286 kB]
Get:56 http://ftpmaster.internal/ubuntu noble/main s390x debugedit s390x 1:5.0-5build2 [50.5 kB]
Get:57 http://ftpmaster.internal/ubuntu noble/main s390x dwz s390x 0.15-1build6 [122 kB]
Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gettext s390x 0.21-14ubuntu2 [915 kB]
Get:59 http://ftpmaster.internal/ubuntu noble/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB]
Get:60 http://ftpmaster.internal/ubuntu noble/main s390x po-debconf all 1.0.21+nmu1 [233 kB]
Get:61 http://ftpmaster.internal/ubuntu noble/main s390x debhelper all 13.14.1ubuntu5 [869 kB]
Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x gengetopt s390x 2.23+dfsg1-1 [142 kB]
Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240330-1ubuntu2 [598 kB]
Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-23ubuntu3 [623 kB]
Get:65 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [10.4 MB]
Get:66 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-23ubuntu3 [10.9 kB]
Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu2 [1014 B]
Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gfortran s390x 4:13.2.0-7ubuntu2 [1170 B]
Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnl-3-200 s390x 3.7.0-0.3build1 [59.7 kB]
Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnl-route-3-200 s390x 3.7.0-0.3build1 [191 kB]
Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libibverbs1 s390x 50.0-2build2 [70.2 kB]
Get:72 http://ftpmaster.internal/ubuntu noble/main s390x ibverbs-providers s390x 50.0-2build2 [409 kB]
Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main s390x icu-devtools s390x 74.2-1ubuntu3 [223 kB]
Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libblas3 s390x 3.12.0-3build1 [245 kB]
Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libblas-dev s390x 3.12.0-3build1 [239 kB]
Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libboost1.83-dev s390x 1.83.0-2.1ubuntu3 [10.7 MB]
Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B]
Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libboost-serialization1.83.0 s390x 1.83.0-2.1ubuntu3 [350 kB]
Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libboost-serialization1.83-dev s390x 1.83.0-2.1ubuntu3 [408 kB]
Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libevent-core-2.1-7t64 s390x 2.1.12-stable-9ubuntu2 [94.7 kB]
Get:81 http://ftpmaster.internal/ubuntu noble/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-9ubuntu2 [7954 B]
Get:82 http://ftpmaster.internal/ubuntu noble/main s390x librdmacm1t64 s390x 50.0-2build2 [74.1 kB]
Get:83 http://ftpmaster.internal/ubuntu noble/universe s390x libfabric1 s390x 1.17.0-3build2 [566 kB]
Get:84 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc15 s390x 2.10.0-1 [174 kB]
Get:85 http://ftpmaster.internal/ubuntu noble/universe s390x libmunge2 s390x 0.5.15-4build1 [15.6 kB]
Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB]
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Get:88 http://ftpmaster.internal/ubuntu noble/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1 [39.1 kB]
Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-plugins s390x 2.10.0-1 [16.1 kB]
Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix2t64 s390x 5.0.1-4.1build1 [728 kB]
Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi3t64 s390x 4.1.6-7ubuntu2 [2437 kB]
Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-mpi1.83.0 s390x 1.83.0-2.1ubuntu3 [273 kB]
Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-common all 4.1.6-7ubuntu2 [170 kB]
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Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libltdl7 s390x 2.4.7-7build1 [41.8 kB]
Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libltdl-dev s390x 2.4.7-7build1 [170 kB]
Get:100 http://ftpmaster.internal/ubuntu noble/universe s390x libhwloc-dev s390x 2.10.0-1 [270 kB]
Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-9ubuntu2 [147 kB]
Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libevent-extra-2.1-7t64 s390x 2.1.12-stable-9ubuntu2 [64.7 kB]
Get:103 http://ftpmaster.internal/ubuntu noble/main s390x libevent-openssl-2.1-7t64 s390x 2.1.12-stable-9ubuntu2 [15.3 kB]
Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libevent-dev s390x 2.1.12-stable-9ubuntu2 [278 kB]
Get:105 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB]
Get:106 http://ftpmaster.internal/ubuntu noble/universe s390x libpmix-dev s390x 5.0.1-4.1build1 [4041 kB]
Get:107 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
Get:108 http://ftpmaster.internal/ubuntu noble/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
Get:109 http://ftpmaster.internal/ubuntu noble/universe s390x openmpi-bin s390x 4.1.6-7ubuntu2 [84.5 kB]
Get:110 http://ftpmaster.internal/ubuntu noble/universe s390x libopenmpi-dev s390x 4.1.6-7ubuntu2 [825 kB]
Get:111 http://ftpmaster.internal/ubuntu noble/universe s390x mpi-default-dev s390x 1.15 [3118 B]
Get:112 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-mpi1.83-dev s390x 1.83.0-2.1ubuntu3 [299 kB]
Get:113 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-mpi-dev s390x 1.83.0.1ubuntu2 [4148 B]
Get:114 http://ftpmaster.internal/ubuntu noble/universe s390x libboost-serialization-dev s390x 1.83.0.1ubuntu2 [4280 B]
Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libicu-dev s390x 74.2-1ubuntu3 [11.9 MB]
Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB]
Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main s390x liblapack-dev s390x 3.12.0-3build1 [5983 kB]
Get:118 http://ftpmaster.internal/ubuntu noble/main s390x libxml2-dev s390x 2.9.14+dfsg-1.3ubuntu3 [833 kB]
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Selecting previously unselected package libevent-2.1-7t64:s390x.
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Selecting previously unselected package libevent-openssl-2.1-7t64:s390x.
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Setting up libexpat1:s390x (2.6.1-2build1) ...
Setting up libpipeline1:s390x (1.5.7-2) ...
Setting up libpciaccess0:s390x (0.17-3build1) ...
Setting up libxau6:s390x (1:1.0.9-1build6) ...
Setting up libboost1.83-dev:s390x (1.83.0-2.1ubuntu3) ...
Setting up gengetopt (2.23+dfsg1-1) ...
Setting up libmagic-mgc (1:5.45-3build1) ...
Setting up libcbor0.10:s390x (0.10.2-1.2ubuntu2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.14.1ubuntu5) ...
Setting up libbrotli1:s390x (1.1.0-2build2) ...
Setting up libuv1t64:s390x (1.48.0-1.1build1) ...
Setting up libmagic1t64:s390x (1:5.45-3build1) ...
Setting up libpsl5t64:s390x (0.21.2-1.1build1) ...
Setting up libnghttp2-14:s390x (1.59.0-1build2) ...
Setting up gettext-base (0.21-14ubuntu2) ...
Setting up m4 (1.4.19-4build1) ...
Setting up libevent-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ...
Setting up file (1:5.45-3build1) ...
Setting up libelf1t64:s390x (0.190-1.1build4) ...
Setting up libdw1t64:s390x (0.190-1.1build4) ...
Setting up libsasl2-modules-db:s390x (2.1.28+dfsg1-5ubuntu3) ...
Setting up libboost-serialization1.83.0:s390x (1.83.0-2.1ubuntu3) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:s390x (3.12.0-3build1) ...
update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
Setting up libmunge2:s390x (0.5.15-4build1) ...
Setting up libx11-data (2:1.8.7-1build1) ...
Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build7) ...
Setting up libhwloc15:s390x (2.10.0-1) ...
Setting up autopoint (0.21-14ubuntu2) ...
Setting up libjsoncpp25:s390x (1.9.5-6build1) ...
Setting up libltdl7:s390x (2.4.7-7build1) ...
Setting up libsasl2-2:s390x (2.1.28+dfsg1-5ubuntu3) ...
Setting up libssh-4:s390x (0.10.6-2build2) ...
Setting up libgfortran5:s390x (14-20240330-1ubuntu2) ...
Setting up autoconf (2.71-3) ...
Setting up libicu74:s390x (74.2-1ubuntu3) ...
Setting up zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ...
Setting up libnuma1:s390x (2.0.18-1build1) ...
Setting up dwz (0.15-1build6) ...
Setting up ocl-icd-libopencl1:s390x (2.3.2-1) ...
Setting up librhash0:s390x (1.4.3-3build1) ...
Setting up libuchardet0:s390x (0.0.8-1build1) ...
Setting up libnl-3-200:s390x (3.7.0-0.3build1) ...
Setting up bison (2:3.8.2+dfsg-1build2) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up openmpi-common (4.1.6-7ubuntu2) ...
Setting up debugedit (1:5.0-5build2) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up cmake-data (3.28.3-1build6) ...
Setting up libboost-dev:s390x (1.83.0.1ubuntu2) ...
Setting up libevent-core-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libfido2-1:s390x (1.14.0-1build2) ...
Setting up libgfortran-13-dev:s390x (13.2.0-23ubuntu3) ...
Setting up libbsd0:s390x (0.12.1-1build1) ...
Setting up libxml2:s390x (2.9.14+dfsg-1.3ubuntu3) ...
Setting up libldap2:s390x (2.6.7+dfsg-1~exp1ubuntu8) ...
Setting up libblas-dev:s390x (3.12.0-3build1) ...
update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
Setting up automake (1:1.16.5-1.3ubuntu1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu6) ...
Setting up flex (2.6.4-8.2build1) ...
Setting up liblapack3:s390x (3.12.0-3build1) ...
update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
Setting up libxcb1:s390x (1.15-1) ...
Setting up gettext (0.21-14ubuntu2) ...
Setting up libcurl4t64:s390x (8.5.0-2ubuntu10) ...
Setting up libtool (2.4.7-7build1) ...
Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ...
Setting up libedit2:s390x (3.1-20230828-1build1) ...
Setting up libevent-openssl-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ...
Setting up libboost-serialization1.83-dev:s390x (1.83.0-2.1ubuntu3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libnuma-dev:s390x (2.0.18-1build1) ...
Setting up libnl-route-3-200:s390x (3.7.0-0.3build1) ...
Setting up dh-autoreconf (20) ...
Setting up libltdl-dev:s390x (2.4.7-7build1) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up liblapack-dev:s390x (3.12.0-3build1) ...
update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
Setting up icu-devtools (74.2-1ubuntu3) ...
Setting up libboost-serialization-dev:s390x (1.83.0.1ubuntu2) ...
Setting up libevent-extra-2.1-7t64:s390x (2.1.12-stable-9ubuntu2) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up libnl-3-dev:s390x (3.7.0-0.3build1) ...
Setting up groff-base (1.23.0-3build2) ...
Setting up gfortran-13-s390x-linux-gnu (13.2.0-23ubuntu3) ...
Setting up libx11-6:s390x (2:1.8.7-1build1) ...
Setting up libhwloc-dev:s390x (2.10.0-1) ...
Setting up libarchive13t64:s390x (3.7.2-2) ...
Setting up libicu-dev:s390x (74.2-1ubuntu3) ...
Setting up libibverbs1:s390x (50.0-2build2) ...
Setting up gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu2) ...
Setting up ibverbs-providers:s390x (50.0-2build2) ...
Setting up openssh-client (1:9.6p1-3ubuntu13) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:s390x (2:1.3.4-1build2) ...
Setting up man-db (2.12.0-4build2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer.
Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ...
Setting up libnl-route-3-dev:s390x (3.7.0-0.3build1) ...
Setting up libxml2-dev:s390x (2.9.14+dfsg-1.3ubuntu3) ...
Setting up gfortran-13 (13.2.0-23ubuntu3) ...
Setting up libevent-dev (2.1.12-stable-9ubuntu2) ...
Setting up cmake (3.28.3-1build6) ...
Setting up librdmacm1t64:s390x (50.0-2build2) ...
Setting up libfabric1:s390x (1.17.0-3build2) ...
Setting up debhelper (13.14.1ubuntu5) ...
Setting up libibverbs-dev:s390x (50.0-2build2) ...
Setting up libhwloc-plugins:s390x (2.10.0-1) ...
Setting up gfortran (4:13.2.0-7ubuntu2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
Setting up libpmix2t64:s390x (5.0.1-4.1build1) ...
Setting up libopenmpi3t64:s390x (4.1.6-7ubuntu2) ...
Setting up libboost-mpi1.83.0 (1.83.0-2.1ubuntu3) ...
Setting up libpmix-dev:s390x (5.0.1-4.1build1) ...
Setting up openmpi-bin (4.1.6-7ubuntu2) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libopenmpi-dev:s390x (4.1.6-7ubuntu2) ...
update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode
Setting up mpi-default-dev (1.15) ...
Setting up libboost-mpi1.83-dev (1.83.0-2.1ubuntu3) ...
Setting up libboost-mpi-dev (1.83.0.1ubuntu2) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.39-0ubuntu8) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (s390x included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:47:16 UTC 2024 s390x (s390x)
Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 linux-libc-dev_6.8.0-22.22
Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13ubuntu9 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-s390x-linux-gnu_2.42-4ubuntu2 bison_2:3.8.2+dfsg-1build2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 cmake_3.28.3-1build6 cmake-data_3.28.3-1build6 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu2 cpp-13_13.2.0-23ubuntu3 cpp-13-s390x-linux-gnu_13.2.0-23ubuntu3 cpp-s390x-linux-gnu_4:13.2.0-7ubuntu2 dash_0.5.12-6ubuntu5 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 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libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-23ubuntu3 libgcc-s1_14-20240330-1ubuntu2 libgcrypt20_1.10.3-2build1 libgdbm-compat4t64_1.23-5.1build1 libgdbm6t64_1.23-5.1build1 libgfortran-13-dev_13.2.0-23ubuntu3 libgfortran5_14-20240330-1ubuntu2 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30t64_3.8.3-1.1ubuntu3 libgomp1_14-20240330-1ubuntu2 libgpg-error-l10n_1.47-3build2 libgpg-error0_1.47-3build2 libgpm2_1.20.7-11 libgssapi-krb5-2_1.20.1-6ubuntu2 libhogweed6t64_3.9.1-2.2build1 libhwloc-dev_2.10.0-1 libhwloc-plugins_2.10.0-1 libhwloc15_2.10.0-1 libibverbs-dev_50.0-2build2 libibverbs1_50.0-2build2 libicu-dev_74.2-1ubuntu3 libicu74_74.2-1ubuntu3 libidn2-0_2.3.7-2build1 libip4tc2_1.8.10-3ubuntu2 libisl23_0.26-3build1 libitm1_14-20240330-1ubuntu2 libjansson4_2.14-2build2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libjson-c5_0.17-1build1 libjsoncpp25_1.9.5-6build1 libk5crypto3_1.20.1-6ubuntu2 libkeyutils1_1.6.3-3build1 libkmod2_31+20240202-2ubuntu6 libkrb5-3_1.20.1-6ubuntu2 libkrb5support0_1.20.1-6ubuntu2 liblapack-dev_3.12.0-3build1 liblapack3_3.12.0-3build1 libldap2_2.6.7+dfsg-1~exp1ubuntu8 liblocale-gettext-perl_1.07-6ubuntu5 liblockfile-bin_1.17-1build3 liblockfile1_1.17-1build3 libltdl-dev_2.4.7-7build1 libltdl7_2.4.7-7build1 liblz4-1_1.9.4-1build1 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3build1 libmagic1t64_1:5.45-3build1 libmd0_1.1.0-2build1 libmount1_2.39.3-9ubuntu6 libmpc3_1.3.1-1build1 libmpfr6_4.2.1-1build1 libmunge2_0.5.15-4build1 libncursesw6_6.4+20240113-1ubuntu2 libnettle8t64_3.9.1-2.2build1 libnghttp2-14_1.59.0-1build2 libnl-3-200_3.7.0-0.3build1 libnl-3-dev_3.7.0-0.3build1 libnl-route-3-200_3.7.0-0.3build1 libnl-route-3-dev_3.7.0-0.3build1 libnpth0t64_1.6-3.1build1 libnsl-dev_1.3.0-3build3 libnsl2_1.3.0-3build3 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-5build1 libnuma-dev_2.0.18-1build1 libnuma1_2.0.18-1build1 libopenmpi-dev_4.1.6-7ubuntu2 libopenmpi3t64_4.1.6-7ubuntu2 libp11-kit0_0.25.3-4ubuntu2 libpam-modules_1.5.3-5ubuntu4 libpam-modules-bin_1.5.3-5ubuntu4 libpam-runtime_1.5.3-5ubuntu4 libpam0g_1.5.3-5ubuntu4 libpciaccess0_0.17-3build1 libpcre2-8-0_10.42-4ubuntu2 libperl5.36_5.36.0-9ubuntu1 libperl5.38t64_5.38.2-3.2build2 libpipeline1_1.5.7-2 libpmix-dev_5.0.1-4.1build1 libpmix2t64_5.0.1-4.1build1 libpng16-16t64_1.6.43-5build1 libproc2-0_2:4.0.4-4ubuntu3 libpsl5t64_0.21.2-1.1build1 librdmacm1t64_50.0-2build2 libreadline8t64_8.2-4build1 librhash0_1.4.3-3build1 librtmp1_2.4+20151223.gitfa8646d.1-2build7 libsasl2-2_2.1.28+dfsg1-5ubuntu3 libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3 libseccomp2_2.5.5-1ubuntu3 libselinux1_3.5-2ubuntu2 libsemanage-common_3.5-1build5 libsemanage2_3.5-1build5 libsepol2_3.5-2build1 libsframe1_2.42-4ubuntu2 libsmartcols1_2.39.3-9ubuntu6 libsqlite3-0_3.45.1-1ubuntu2 libss2_1.47.0-2.4~exp1ubuntu4 libssh-4_0.10.6-2build2 libssl3t64_3.0.13-0ubuntu3 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 libsub-override-perl_0.10-1 libsystemd-shared_255.4-1ubuntu7 libsystemd0_255.4-1ubuntu7 libtasn1-6_4.19.0-3build1 libtext-charwidth-perl_0.04-11build3 libtext-iconv-perl_1.7-8build3 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20240113-1ubuntu2 libtirpc-common_1.3.4+ds-1.1build1 libtirpc-dev_1.3.4+ds-1.1build1 libtirpc3t64_1.3.4+ds-1.1build1 libtool_2.4.7-7build1 libubsan1_14-20240330-1ubuntu2 libuchardet0_0.0.8-1build1 libudev1_255.4-1ubuntu7 libunistring2_1.0-2 libunistring5_1.1-2build1 libuuid1_2.39.3-9ubuntu6 libuv1t64_1.48.0-1.1build1 libx11-6_2:1.8.7-1build1 libx11-data_2:1.8.7-1build1 libxau6_1:1.0.9-1build6 libxcb1_1.15-1 libxdmcp6_1:1.1.3-0ubuntu6 libxext6_2:1.3.4-1build2 libxml2_2.9.14+dfsg-1.3ubuntu3 libxml2-dev_2.9.14+dfsg-1.3ubuntu3 libxnvctrl0_510.47.03-0ubuntu4 libxxhash0_0.8.2-2build1 libzstd1_1.5.5+dfsg2-2build1 linux-libc-dev_6.8.0-22.22 lockfile-progs_0.1.19build2 login_1:4.13+dfsg1-4ubuntu3 logsave_1.47.0-2.4~exp1ubuntu4 lto-disabled-list_47 m4_1.4.19-4build1 make_4.3-4.1build2 man-db_2.12.0-4build2 mawk_1.3.4.20240123-1build1 mount_2.39.3-9ubuntu6 mpi-default-dev_1.15 ncurses-base_6.4+20240113-1ubuntu2 ncurses-bin_6.4+20240113-1ubuntu2 ocl-icd-libopencl1_2.3.2-1 openmpi-bin_4.1.6-7ubuntu2 openmpi-common_4.1.6-7ubuntu2 openssh-client_1:9.6p1-3ubuntu13 openssl_3.0.13-0ubuntu3 optipng_0.7.8+ds-1build2 passwd_1:4.13+dfsg1-4ubuntu3 patch_2.7.6-7build3 perl_5.38.2-3.2build2 perl-base_5.38.2-3.2build2 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2build2 pinentry-curses_1.2.1-3ubuntu5 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu3 psmisc_23.7-1build1 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu7 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2build1 sensible-utils_0.0.22 systemd_255.4-1ubuntu7 systemd-dev_255.4-1ubuntu7 systemd-sysv_255.4-1ubuntu7 sysvinit-utils_3.08-6ubuntu3 tar_1.35+dfsg-3build1 tzdata_2024a-2ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: prime-phylo
Binary: prime-phylo
Architecture: any
Version: 1.0.11-10ubuntu1
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Uploaders: Erik Sjolund <erik.sjolund@gmail.com>, Andreas Tille <tille@debian.org>
Homepage: http://prime.sbc.su.se
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/prime-phylo
Vcs-Git: https://salsa.debian.org/med-team/prime-phylo.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev
Package-List:
 prime-phylo deb science optional arch=any
Checksums-Sha1:
 1dd3b086599e29f6a17319f8ebe294cd6eed0c07 750651 prime-phylo_1.0.11.orig.tar.gz
 e86270085ba62d56a5da8b63aa2284381c367ad0 9224 prime-phylo_1.0.11-10ubuntu1.debian.tar.xz
Checksums-Sha256:
 5d46b4e528417bb4a0be56756069f255f86ab58b28b55fa6a96983f10585bd8d 750651 prime-phylo_1.0.11.orig.tar.gz
 10dd0091c8e53276bfa244b7b19365f3cabd7c74a571d8455942641053eda4fa 9224 prime-phylo_1.0.11-10ubuntu1.debian.tar.xz
Files:
 0356071434de01edf92a1b9182ed6ef1 750651 prime-phylo_1.0.11.orig.tar.gz
 a4a49c7c36041ede5c1017d8ee689766 9224 prime-phylo_1.0.11-10ubuntu1.debian.tar.xz
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

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gpgv: Signature made Thu Apr 11 22:14:47 2024 UTC
gpgv:                using RSA key EB1FEB70AAE5DDA3B0CD454923D1CE4534419437
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./prime-phylo_1.0.11-10ubuntu1.dsc: no acceptable signature found
dpkg-source: info: extracting prime-phylo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking prime-phylo_1.0.11.orig.tar.gz
dpkg-source: info: unpacking prime-phylo_1.0.11-10ubuntu1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-ftbfs-with-Boost160.patch
dpkg-source: info: applying fix-gcc-8.patch
dpkg-source: info: applying 0003-Fix-build-with-Boost-1.67.patch
dpkg-source: info: applying 0004-fix-gcc10-build.patch
dpkg-source: info: applying fix-ftbfs-with-gcc13.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=noautodbgsym parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28050322
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28050322
SCHROOT_COMMAND=env
SCHROOT_GID=2501
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=build-PACKAGEBUILD-28050322
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon <buildd@bos02-s390x-019.buildd> -B -rfakeroot
dpkg-buildpackage: info: source package prime-phylo
dpkg-buildpackage: info: source version 1.0.11-10ubuntu1
dpkg-buildpackage: info: source distribution noble
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture s390x
 debian/rules clean
dh clean --buildsystem=cmake
   dh_auto_clean -O--buildsystem=cmake
   dh_autoreconf_clean -O--buildsystem=cmake
   dh_clean -O--buildsystem=cmake
 debian/rules binary-arch
dh binary-arch --buildsystem=cmake
   dh_update_autotools_config -a -O--buildsystem=cmake
   dh_autoreconf -a -O--buildsystem=cmake
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-Dofficial_binary_packaging=on \
-Dprime_dynamic=on \
-DCMAKE_INSTALL_PREFIX=/usr \
-DCMAKE_INSTALL_RPATH=/usr/lib/prime-phylo \
-DCMAKE_BUILD_TYPE=RELEASE
	cd obj-s390x-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -Dofficial_binary_packaging=on -Dprime_dynamic=on -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_RPATH=/usr/lib/prime-phylo -DCMAKE_BUILD_TYPE=RELEASE ..
CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- The CXX compiler identification is GNU 13.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The Fortran compiler identification is GNU 13.2.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- The C compiler identification is GNU 13.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Found BLAS: /usr/lib/s390x-linux-gnu/libblas.so  
hittade /usr/lib/s390x-linux-gnu/libblas.so
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- Found LAPACK: /usr/lib/s390x-linux-gnu/liblapack.so;/usr/lib/s390x-linux-gnu/libblas.so  
-- Found BISON: /usr/bin/bison (found version "3.8.2") 
-- Found FLEX: /usr/bin/flex (found version "2.6.4") 
-- Found MPI_C: /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") 
-- Found MPI_CXX: /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") 
-- Found MPI_Fortran: /usr/lib/s390x-linux-gnu/libmpi_usempif08.so (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
-- Found Boost: /usr/lib/s390x-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.40.0") found components: mpi serialization 
-- Found LibXml2: /usr/lib/s390x-linux-gnu/libxml2.so (found version "2.9.14") 
mpilib is /usr/lib/s390x-linux-gnu/openmpi/include;/usr/lib/s390x-linux-gnu/openmpi/include/openmpi 
included path is  
CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "primeDTLSR".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  src/cxx/applications/primeDTLSR/CMakeLists.txt:30 (prime_add_tests)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "primeDLRS".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  src/cxx/applications/primeDLRS/CMakeLists.txt:27 (prime_add_tests)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "showtree".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  src/cxx/tools/showtree/CMakeLists.txt:12 (prime_add_tests)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at CMakeLists.txt:120 (if):
  Policy CMP0053 is not set: Simplify variable reference and escape sequence
  evaluation.  Run "cmake --help-policy CMP0053" for policy details.  Use the
  cmake_policy command to set the policy and suppress this warning.

  For input:

    '@CMAKE_SOURCE_DIR@/excluded_from_release'

  the old evaluation rules produce:

    '/<<PKGBUILDDIR>>/excluded_from_release'

  but the new evaluation rules produce:

    '@CMAKE_SOURCE_DIR@/excluded_from_release'

  Using the old result for compatibility since the policy is not set.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done (7.7s)
CMake Warning (dev) at src/cxx/tools/tree2leafnames/CMakeLists.txt:4 (add_executable):
  Policy CMP0115 is not set: Source file extensions must be explicit.  Run
  "cmake --help-policy CMP0115" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  File:

    /<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Generating done (0.1s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR
    FETCHCONTENT_FULLY_DISCONNECTED


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-s390x-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a -O--buildsystem=cmake
	cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/CMakeFiles /<<PKGBUILDDIR>>/obj-s390x-linux-gnu//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
make  -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[  1%] [FLEX][MyScanner2] Building scanner with flex 2.6.4
[  1%] [BISON][MyParser2] Building parser with bison 3.8.2
cd /<<PKGBUILDDIR>>/src/cxx/libraries/sfile && /usr/bin/flex -o/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile/lexer.c seqreader.l
cd /<<PKGBUILDDIR>>/src/cxx/libraries/sfile && /usr/bin/bison -d -d -o /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile/gb.tab.c gb.y
gb.y: warning: 1 nonterminal useless in grammar [-Wother]
gb.y: warning: 1 rule useless in grammar [-Wother]
gb.y:259.1-12: warning: nonterminal useless in grammar: darwin_entry [-Wother]
  259 | darwin_entry	: TEXT {$$ = NULL; /* Not implemented yet */}
      | ^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
make  -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[  1%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gbread.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gbread.c.o -MF CMakeFiles/prime-phylo-sfile.dir/gbread.c.o.d -o CMakeFiles/prime-phylo-sfile.dir/gbread.c.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c
[  1%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o -MF CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o.d -o CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile/gb.tab.c
[  3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/lexer.c.o
[  3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/sfile.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/sfile.c.o -MF CMakeFiles/prime-phylo-sfile.dir/sfile.c.o.d -o CMakeFiles/prime-phylo-sfile.dir/sfile.c.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/lexer.c.o -MF CMakeFiles/prime-phylo-sfile.dir/lexer.c.o.d -o CMakeFiles/prime-phylo-sfile.dir/lexer.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile/lexer.c
gb.y: In function ‘add_to_seq’:
gb.y:403:9: warning: unused variable ‘new_buf’ [-Wunused-variable]
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c: In function ‘seq_print’:
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:265:14: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=]
  265 |       printf("%9d", char_counter + 1);
      |              ^~~~~  ~~~~~~~~~~~~~~~~
      |                                  |
      |                                  long int
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:212:15: warning: variable ‘date’ set but not used [-Wunused-but-set-variable]
  212 |   char *top, *date;
      |               ^~~~
seqreader.l: In function ‘seq_read’:
seqreader.l:270:9: warning: unused variable ‘code’ [-Wunused-variable]
/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile/lexer.c: At top level:
/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile/lexer.c:1864:16: warning: ‘input’ defined but not used [-Wunused-function]
 1864 |     static int input  (void)
      |                ^~~~~
/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile/lexer.c:1821:17: warning: ‘yyunput’ defined but not used [-Wunused-function]
 1821 |     static void yyunput (int c, char * yy_bp )
      |                 ^~~~~~~
In function ‘seq_add_comment’,
    inlined from ‘seq_add_comment’ at /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:288:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:303:27: warning: array subscript ‘struct comment[0]’ is partly outside array bounds of ‘unsigned char[8]’ [-Warray-bounds=]
  303 |                 tmp->text = strdup(s);
      |                 ~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:301:38: note: object of size 8 allocated by ‘malloc’
  301 |             tmp = (struct comment *) malloc(sizeof(struct comment *));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:304:27: warning: array subscript ‘struct comment[0]’ is partly outside array bounds of ‘unsigned char[8]’ [-Warray-bounds=]
  304 |                 tmp->next = NULL;
      |                           ^
/<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:301:38: note: object of size 8 allocated by ‘malloc’
  301 |             tmp = (struct comment *) malloc(sizeof(struct comment *));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[  4%] Linking C shared library libprime-phylo-sfile.so
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cmake -E cmake_link_script CMakeFiles/prime-phylo-sfile.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libprime-phylo-sfile.so -o libprime-phylo-sfile.so "CMakeFiles/prime-phylo-sfile.dir/gbread.c.o" "CMakeFiles/prime-phylo-sfile.dir/sfile.c.o" "CMakeFiles/prime-phylo-sfile.dir/lexer.c.o" "CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o"  -Wl,-rpath,:::::::::::::::::::: 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[  4%] Built target prime-phylo-sfile
make  -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[  5%] [FLEX][MyScanner] Building scanner with flex 2.6.4
cd /<<PKGBUILDDIR>>/src/cxx/libraries/prime && /usr/bin/flex -Pyytree_ -o/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime/lexer.c NHX.l
[  5%] [BISON][MyParser] Building parser with bison 3.8.2
cd /<<PKGBUILDDIR>>/src/cxx/libraries/prime && /usr/bin/bison -d -y -p yytree_ -d -o /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime/NHXparse.c NHXparse.y
NHXparse.y:108.1-7: warning: POSIX Yacc does not support %expect [-Wyacc]
  108 | %expect 4 
      | ^~~~~~~
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/libraries/prime /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
make  -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[  5%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXtree.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXtree.c.o -MF CMakeFiles/prime-phylo.dir/NHXtree.c.o.d -o CMakeFiles/prime-phylo.dir/NHXtree.c.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXtree.c
[  6%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXnode.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXnode.c.o -MF CMakeFiles/prime-phylo.dir/NHXnode.c.o.d -o CMakeFiles/prime-phylo.dir/NHXnode.c.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXnode.c
[  7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXannotation.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXannotation.c.o -MF CMakeFiles/prime-phylo.dir/NHXannotation.c.o.d -o CMakeFiles/prime-phylo.dir/NHXannotation.c.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXannotation.c
[  7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/lexer.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/lexer.c.o -MF CMakeFiles/prime-phylo.dir/lexer.c.o.d -o CMakeFiles/prime-phylo.dir/lexer.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime/lexer.c
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXnode.c: In function ‘NHX_debug_print’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXnode.c:155:32: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘double’ [-Wformat=]
  155 |         fprintf(stderr, "BW:\t%d\n", l->arg.t);
      |                               ~^     ~~~~~~~~
      |                                |           |
      |                                int         double
      |                               %f
[  8%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXparse.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXparse.c.o -MF CMakeFiles/prime-phylo.dir/NHXparse.c.o.d -o CMakeFiles/prime-phylo.dir/NHXparse.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime/NHXparse.c
/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime/lexer.c:1597:16: warning: ‘input’ defined but not used [-Wunused-function]
 1597 |     static int input  (void)
      |                ^~~~~
/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime/lexer.c:1554:17: warning: ‘yyunput’ defined but not used [-Wunused-function]
 1554 |     static void yyunput (int c, char * yy_bp )
      |                 ^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXannotation.c: In function ‘new_annotation’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NHXannotation.c:80:3: warning: ‘strncpy’ specified bound 5 equals destination size [-Wstringop-truncation]
   80 |   strncpy(a->anno_type, tag, MAX_ANNOTATION_ID_LENGTH);
      |   ^
NHXparse.y: In function ‘read_tree’:
NHXparse.y:354:11: warning: passing argument 1 of ‘close’ makes integer from pointer without a cast [-Wint-conversion]
In file included from NHXparse.y:5:
/usr/include/unistd.h:358:23: note: expected ‘int’ but argument is of type ‘FILE *’
  358 | extern int close (int __fd);
      |                   ~~~~^~~~
NHXparse.y: In function ‘read_tree_string’:
NHXparse.y:402:20: warning: passing argument 1 of ‘read_from_string’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
NHXparse.y:19:36: note: expected ‘char *’ but argument is of type ‘const char *’
[  8%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/AnError.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/AnError.cc.o -MF CMakeFiles/prime-phylo.dir/AnError.cc.o.d -o CMakeFiles/prime-phylo.dir/AnError.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/AnError.cc
[  9%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Beep.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Beep.cc.o -MF CMakeFiles/prime-phylo.dir/Beep.cc.o.d -o CMakeFiles/prime-phylo.dir/Beep.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Beep.cc
[ 10%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BeepOption.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BeepOption.cc.o -MF CMakeFiles/prime-phylo.dir/BeepOption.cc.o.d -o CMakeFiles/prime-phylo.dir/BeepOption.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepOption.cc
[ 10%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Hacks.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Hacks.cc.o -MF CMakeFiles/prime-phylo.dir/Hacks.cc.o.d -o CMakeFiles/prime-phylo.dir/Hacks.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Hacks.cc
[ 11%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ODESolver.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ODESolver.cc.o -MF CMakeFiles/prime-phylo.dir/ODESolver.cc.o.d -o CMakeFiles/prime-phylo.dir/ODESolver.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.cc
[ 11%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PRNG.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PRNG.cc.o -MF CMakeFiles/prime-phylo.dir/PRNG.cc.o.d -o CMakeFiles/prime-phylo.dir/PRNG.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PRNG.cc
[ 12%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o -MF CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o.d -o CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOptionMap.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:359:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C2’ of non-integral type [-fpermissive]
  359 |         static const Real C2 =       1.0 /      5.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:360:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C3’ of non-integral type [-fpermissive]
  360 |         static const Real C3 =       3.0 /     10.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:361:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C4’ of non-integral type [-fpermissive]
  361 |         static const Real C4 =       4.0 /      5.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:362:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C5’ of non-integral type [-fpermissive]
  362 |         static const Real C5 =       8.0 /      9.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:363:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A21’ of non-integral type [-fpermissive]
  363 |         static const Real A21 =      1.0 /      5.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:364:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A31’ of non-integral type [-fpermissive]
  364 |         static const Real A31 =      3.0 /     40.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:365:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A32’ of non-integral type [-fpermissive]
  365 |         static const Real A32 =      9.0 /     40.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:366:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A41’ of non-integral type [-fpermissive]
  366 |         static const Real A41 =     44.0 /     45.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:367:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A42’ of non-integral type [-fpermissive]
  367 |         static const Real A42 =    -56.0 /     15.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:368:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A43’ of non-integral type [-fpermissive]
  368 |         static const Real A43 =     32.0 /      9.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:369:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A51’ of non-integral type [-fpermissive]
  369 |         static const Real A51 =  19372.0 /   6561.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A52’ of non-integral type [-fpermissive]
  370 |     static const Real A52 = -25360.0 /   2187.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A53’ of non-integral type [-fpermissive]
  371 |     static const Real A53 =  64448.0 /   6561.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A54’ of non-integral type [-fpermissive]
  372 |     static const Real A54 =   -212.0 /    729.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A61’ of non-integral type [-fpermissive]
  373 |     static const Real A61 =   9017.0 /   3168.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A62’ of non-integral type [-fpermissive]
  374 |     static const Real A62 =   -355.0 /     33.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A63’ of non-integral type [-fpermissive]
  375 |     static const Real A63 =  46732.0 /   5247.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A64’ of non-integral type [-fpermissive]
  376 |     static const Real A64 =     49.0 /    176.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A65’ of non-integral type [-fpermissive]
  377 |     static const Real A65 =  -5103.0 /  18656.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A71’ of non-integral type [-fpermissive]
  378 |     static const Real A71 =     35.0 /    384.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A73’ of non-integral type [-fpermissive]
  379 |     static const Real A73 =    500.0 /   1113.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A74’ of non-integral type [-fpermissive]
  380 |     static const Real A74 =    125.0 /    192.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A75’ of non-integral type [-fpermissive]
  381 |     static const Real A75 =  -2187.0 /   6784.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A76’ of non-integral type [-fpermissive]
  382 |     static const Real A76 =     11.0 /     84.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E1’ of non-integral type [-fpermissive]
  383 |     static const Real E1 =      71.0 /  57600.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E3’ of non-integral type [-fpermissive]
  384 |     static const Real E3 =     -71.0 /  16695.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E4’ of non-integral type [-fpermissive]
  385 |     static const Real E4 =      71.0 /   1920.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E5’ of non-integral type [-fpermissive]
  386 |     static const Real E5 =  -17253.0 / 339200.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E6’ of non-integral type [-fpermissive]
  387 |     static const Real E6 =      22.0 /    525.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E7’ of non-integral type [-fpermissive]
  388 |     static const Real E7 =      -1.0 /     40.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D1’ of non-integral type [-fpermissive]
  391 |     static const Real D1 =  -12715105075.0 /  11282082432.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D3’ of non-integral type [-fpermissive]
  392 |     static const Real D3 =   87487479700.0 /  32700410799.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D4’ of non-integral type [-fpermissive]
  393 |     static const Real D4 =  -10690763975.0 /   1880347072.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D5’ of non-integral type [-fpermissive]
  394 |     static const Real D5 =  701980252875.0 / 199316789632.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D6’ of non-integral type [-fpermissive]
  395 |     static const Real D6 =   -1453857185.0 /    822651844.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D7’ of non-integral type [-fpermissive]
  396 |     static const Real D7 =      69997945.0 /     29380423.0;
      |                       ^~
[ 12%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o -MF CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o.d -o CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ProbabilityModel.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOptionMap.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOption.hh: In member function ‘void beep::UserSubstitutionMatrixOption::parseParams(std::string&, unsigned int, std::vector<beep::UserSubstMatrixParams>&)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOption.hh:405:30: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=]
  405 |         catch(std::exception e)
      |                              ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/PrimeOption.hh:423:30: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=]
  423 |         catch(std::exception e)
      |                              ^
[ 13%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o -MF CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o.d -o CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscreteGamma.cc
[ 14%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Probability.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Probability.cc.o -MF CMakeFiles/prime-phylo.dir/Probability.cc.o.d -o CMakeFiles/prime-phylo.dir/Probability.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Probability.cc
[ 14%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Tokenizer.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Tokenizer.cc.o -MF CMakeFiles/prime-phylo.dir/Tokenizer.cc.o.d -o CMakeFiles/prime-phylo.dir/Tokenizer.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tokenizer.cc
[ 15%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o -MF CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o.d -o CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TimeEstimator.cc
[ 15%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o -MF CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o.d -o CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BranchSwapping.cc
[ 16%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscTree.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscTree.cc.o -MF CMakeFiles/prime-phylo.dir/DiscTree.cc.o.d -o CMakeFiles/prime-phylo.dir/DiscTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscTree.cc
[ 17%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o -MF CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o.d -o CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMaps.cc
[ 17%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o -MF CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o.d -o CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscTree.cc
[ 18%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o -MF CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o.d -o CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc
[ 18%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o -MF CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o.d -o CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtSet.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMaps.cc:6:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:31:43: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   31 | class EdgeDiscPtMapIterator : public std::iterator<std::forward_iterator_tag, T>
      |                                           ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/13/string:47,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/AnError.hh:1,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMaps.cc:3:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator(beep::EdgeDiscPtMap<T>*, beep::EdgeDiscretizer::Point)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:42:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   42 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:54:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   54 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In copy constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator(const beep::EdgeDiscPtMapIterator<T>&)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:64:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   64 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 19%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochTree.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochTree.cc.o -MF CMakeFiles/prime-phylo.dir/EpochTree.cc.o.d -o CMakeFiles/prime-phylo.dir/EpochTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochTree::MIN_SPLICE_DELTA’ of non-integral type [-fpermissive]
   54 |         static const Real MIN_SPLICE_DELTA = 0.0001;
      |                           ^~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/InvMRCA.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/InvMRCA.cc.o -MF CMakeFiles/prime-phylo.dir/InvMRCA.cc.o.d -o CMakeFiles/prime-phylo.dir/InvMRCA.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvMRCA.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochTree::MIN_SPLICE_DELTA’ of non-integral type [-fpermissive]
   54 |         static const Real MIN_SPLICE_DELTA = 0.0001;
      |                           ^~~~~~~~~~~~~~~~
[ 20%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Node.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Node.cc.o -MF CMakeFiles/prime-phylo.dir/Node.cc.o.d -o CMakeFiles/prime-phylo.dir/Node.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Node.cc
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cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NodeMap.cc.o -MF CMakeFiles/prime-phylo.dir/NodeMap.cc.o.d -o CMakeFiles/prime-phylo.dir/NodeMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NodeMap.cc
[ 21%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o -MF CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o.d -o CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NodeNodeMap.cc
[ 22%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o -MF CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o.d -o CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/RandomTreeGenerator.cc
[ 22%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/StrStrMap.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/StrStrMap.cc.o -MF CMakeFiles/prime-phylo.dir/StrStrMap.cc.o.d -o CMakeFiles/prime-phylo.dir/StrStrMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StrStrMap.cc
[ 23%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Tree.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Tree.cc.o -MF CMakeFiles/prime-phylo.dir/Tree.cc.o.d -o CMakeFiles/prime-phylo.dir/Tree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.cc
[ 23%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o -MF CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o.d -o CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeAnalysis.cc
[ 24%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o -MF CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o.d -o CMakeFiles/prime-phylo.dir/TreeDiscretizer.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizer.cc
[ 25%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o -MF CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o.d -o CMakeFiles/prime-phylo.dir/TreeDiscretizers.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeDiscretizers.cc
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cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/TreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc
[ 26%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeIO.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeIO.cc.o -MF CMakeFiles/prime-phylo.dir/TreeIO.cc.o.d -o CMakeFiles/prime-phylo.dir/TreeIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.cc
[ 26%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o -MF CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o.d -o CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc
[ 27%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o -MF CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o.d -o CMakeFiles/prime-phylo.dir/TreeIOTraits.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIOTraits.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc: In constructor ‘beep::TreeMCMC::TreeMCMC(beep::MCMCModel&, beep::Tree&, const beep::Real&)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:26:15: warning: passing NULL to non-pointer argument 1 of ‘beep::RealVector::RealVector(unsigned int)’ [-Wconversion-null]
   26 |     old_times(NULL),
      |               ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BranchSwapping.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.hh:6,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:257:25: note:   declared here
  257 |     RealVector(unsigned n_elems)        //!< All elems are initialized to zero.
      |                ~~~~~~~~~^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:27:15: warning: passing NULL to non-pointer argument 1 of ‘beep::RealVector::RealVector(unsigned int)’ [-Wconversion-null]
   27 |     old_rates(NULL),
      |               ^~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:257:25: note:   declared here
  257 |     RealVector(unsigned n_elems)        //!< All elems are initialized to zero.
      |                ~~~~~~~~~^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeMCMC.cc:28:17: warning: passing NULL to non-pointer argument 1 of ‘beep::RealVector::RealVector(unsigned int)’ [-Wconversion-null]
   28 |     old_lengths(NULL),
      |                 ^~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:257:25: note:   declared here
  257 |     RealVector(unsigned n_elems)        //!< All elems are initialized to zero.
      |                ~~~~~~~~~^~~~~~~
[ 28%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o -MF CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o.d -o CMakeFiles/prime-phylo.dir/TreePerturbationEvent.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreePerturbationEvent.cc
[ 28%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o -MF CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o.d -o CMakeFiles/prime-phylo.dir/ConstRateModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ConstRateModel.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc: In member function ‘void beep::TreeInputOutput::fromFileStream(FILE*, beep::inputFormats)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeInputOutput.cc:118:29: warning: converting to non-pointer type ‘char’ from NULL [-Wconversion-null]
  118 |           buf[ bytes_read ]=NULL;
      |                             ^~~~
[ 29%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2P_common.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2P_common.cc.o -MF CMakeFiles/prime-phylo.dir/Density2P_common.cc.o.d -o CMakeFiles/prime-phylo.dir/Density2P_common.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:89:25: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const double beep::InvGaussDensity::pi’ of non-integral type [-fpermissive]
   89 |     static const double pi = 3.14159265358979; //!< math.constant \f$\pi\f$
      |                         ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:55:17: note:   by ‘virtual beep::Probability beep::InvGaussDensity::operator()(const beep::Real&) const’
   55 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.cc:6:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::LogNormDensity::pi’ of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:55:17: note:   by ‘virtual beep::Probability beep::GammaDensity::operator()(const beep::Real&) const’
   55 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.cc:8:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/UniformDensity.hh:63:17: note:   by ‘virtual beep::Probability beep::UniformDensity::operator()(const beep::Real&) const’
   63 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
[ 29%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o -MF CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o.d -o CMakeFiles/prime-phylo.dir/Density2P_positive.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_positive.cc
[ 30%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/Density2PMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2PMCMC.cc
[ 30%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/EdgeRateMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC.cc
[ 31%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o -MF CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o.d -o CMakeFiles/prime-phylo.dir/EdgeRateMCMC_common.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc
[ 32%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o -MF CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o.d -o CMakeFiles/prime-phylo.dir/EdgeRateModel_common.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateModel_common.cc
[ 32%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o -MF CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o.d -o CMakeFiles/prime-phylo.dir/EdgeWeightHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc: In member function ‘void beep::EdgeRateMCMC_common<Templ_EdgeRateModel>::generateRates() [with Templ_EdgeRateModel = beep::gbmRateModel]’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc:104:30: warning: unused variable ‘fparam’ [-Wunused-variable]
  104 |                         Real fparam = std::log(rate) -  0.5 * variance * (rtime - 3.0 * ltime);
      |                              ^~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeRateMCMC_common.cc:105:30: warning: unused variable ‘rparam’ [-Wunused-variable]
  105 |                         Real rparam = variance * (rtime + ltime);
      |                              ^~~~~~
[ 33%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/EdgeWeightMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightMCMC.cc
[ 33%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GammaDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GammaDensity.cc.o -MF CMakeFiles/prime-phylo.dir/GammaDensity.cc.o.d -o CMakeFiles/prime-phylo.dir/GammaDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:76:18: warning: ‘virtual void beep::EdgeWeightHandler::init(beep::EdgeWeightModel&)’ was hidden [-Woverloaded-virtual=]
   76 |     virtual void init(EdgeWeightModel& erm);
      |                  ^~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:140:18: note:   by ‘virtual void beep::EdgeTimeRateHandler::init(beep::EdgeRateModel&)’
  140 |     virtual void init(EdgeRateModel& erm);
      |                  ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_positive.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:55:17: note:   by ‘virtual beep::Probability beep::GammaDensity::operator()(const beep::Real&) const’
   55 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightMCMC.cc: In member function ‘void beep::EdgeWeightMCMC::showCurrentTree()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightMCMC.cc:106:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  106 |         for (int i = 0; i < t.size(); i++)
      |                         ~~^~~~~~~~~~
[ 34%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o -MF CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o.d -o CMakeFiles/prime-phylo.dir/InvGaussDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.cc
[ 34%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o -MF CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o.d -o CMakeFiles/prime-phylo.dir/LengthRateModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LengthRateModel.cc
[ 35%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o -MF CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o.d -o CMakeFiles/prime-phylo.dir/LogNormDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:89:25: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const double beep::InvGaussDensity::pi’ of non-integral type [-fpermissive]
   89 |     static const double pi = 3.14159265358979; //!< math.constant \f$\pi\f$
      |                         ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_positive.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:55:17: note:   by ‘virtual beep::Probability beep::InvGaussDensity::operator()(const beep::Real&) const’
   55 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
[ 36%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NormalDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NormalDensity.cc.o -MF CMakeFiles/prime-phylo.dir/NormalDensity.cc.o.d -o CMakeFiles/prime-phylo.dir/NormalDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::LogNormDensity::pi’ of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:84:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::NormalDensity::pi’ of non-integral type [-fpermissive]
   84 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:54:17: note:   by ‘virtual beep::Probability beep::NormalDensity::operator()(const beep::Real&) const’
   54 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
[ 36%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/UniformDensity.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/UniformDensity.cc.o -MF CMakeFiles/prime-phylo.dir/UniformDensity.cc.o.d -o CMakeFiles/prime-phylo.dir/UniformDensity.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/UniformDensity.cc
[ 37%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/VarRateModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/VarRateModel.cc.o -MF CMakeFiles/prime-phylo.dir/VarRateModel.cc.o.d -o CMakeFiles/prime-phylo.dir/VarRateModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/VarRateModel.cc
[ 37%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o -MF CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o.d -o CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.cc
[ 38%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DummyMCMC.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/UniformDensity.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/UniformDensity.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/UniformDensity.hh:63:17: note:   by ‘virtual beep::Probability beep::UniformDensity::operator()(const beep::Real&) const’
   63 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::SiteRateHandler::MAX’ of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
[ 38%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MCMCModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MCMCModel.cc.o -MF CMakeFiles/prime-phylo.dir/MCMCModel.cc.o.d -o CMakeFiles/prime-phylo.dir/MCMCModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MCMCModel.cc
[ 39%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o -MF CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o.d -o CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StdMCMCModel.cc
[ 40%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MCMCObject.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MCMCObject.cc.o -MF CMakeFiles/prime-phylo.dir/MCMCObject.cc.o.d -o CMakeFiles/prime-phylo.dir/MCMCObject.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MCMCObject.cc
[ 40%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMC.cc
[ 41%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o -MF CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o.d -o CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMCPostSample.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StdMCMCModel.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::LogNormDensity::pi’ of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StdMCMCModel.cc:6:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:84:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::NormalDensity::pi’ of non-integral type [-fpermissive]
   84 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_positive.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:54:17: note:   by ‘virtual beep::Probability beep::NormalDensity::operator()(const beep::Real&) const’
   54 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/StdMCMCModel.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/UniformDensity.hh:63:17: note:   by ‘virtual beep::Probability beep::UniformDensity::operator()(const beep::Real&) const’
   63 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
[ 41%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleML.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleML.cc.o -MF CMakeFiles/prime-phylo.dir/SimpleML.cc.o.d -o CMakeFiles/prime-phylo.dir/SimpleML.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleML.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMC.cc: In member function ‘virtual void beep::SimpleMCMC::iterate(unsigned int, unsigned int)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleMCMC.cc:78:14: warning: variable ‘check_number_nonupdate’ set but not used [-Wunused-but-set-variable]
   78 |     unsigned check_number_nonupdate = 0;
      |              ^~~~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o -MF CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o.d -o CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/mcmc/MCMCSampler.cc
[ 43%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o -MF CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o.d -o CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/mcmc/GSRSampler.cc
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[ 43%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o
[ 44%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMCMC.cc
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o -MF CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o.d -o CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SimpleObserver.cc
[ 45%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MultiGSR.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MultiGSR.cc.o -MF CMakeFiles/prime-phylo.dir/MultiGSR.cc.o.d -o CMakeFiles/prime-phylo.dir/MultiGSR.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MultiGSR.cc
[ 45%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o -MF CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o.d -o CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc
[ 46%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o -MF CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o.d -o CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDTreeGenerator.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc: In member function ‘virtual beep::Probability beep::MpiMultiGSR::calcDataProbability(unsigned int)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc:338:27: warning: operation on ‘i’ may be undefined [-Wsequence-point]
  338 |                         p[++i] = geneFams[i]->initStateProb();//updateDataProbability();
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc:338:27: warning: operation on ‘i’ may be undefined [-Wsequence-point]
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/MpiMultiGSR.cc:338:27: warning: operation on ‘i’ may be undefined [-Wsequence-point]
[ 47%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathMCMC.cc
[ 47%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o -MF CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o.d -o CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.cc
[ 48%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/CongruentGuestTreeTimeMCMC.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:49:30: warning: ‘virtual beep::BirthDeathProbs& beep::BirthDeathProbs::operator=(const beep::BirthDeathProbs&)’ was hidden [-Woverloaded-virtual=]
   49 |     virtual BirthDeathProbs& operator=(const BirthDeathProbs& dsp);
      |                              ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathMCMC.hh:23:9: note:   by ‘beep::BirthDeathMCMC& beep::BirthDeathMCMC::operator=(const beep::BirthDeathMCMC&)’
   23 |   class BirthDeathMCMC : public StdMCMCModel,
      |         ^~~~~~~~~~~~~~
[ 48%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o -MF CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o.d -o CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DiscBirthDeathProbs.cc
[ 49%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscBDMCMC.cc
[ 49%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o -MF CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o.d -o CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscBDProbs.cc
[ 50%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o -MF CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o.d -o CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscBDProbs.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:31:43: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   31 | class EdgeDiscPtMapIterator : public std::iterator<std::forward_iterator_tag, T>
      |                                           ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/bits/specfun.h:43,
                 from /usr/include/c++/13/cmath:3699,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscBDProbs.cc:2:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator(beep::EdgeDiscPtMap<T>*, beep::EdgeDiscretizer::Point)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:42:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   42 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:54:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   54 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In copy constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator(const beep::EdgeDiscPtMapIterator<T>&)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:64:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   64 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 51%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.cc
[ 51%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o -MF CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o.d -o CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_positive.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:28,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:8:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:55:17: note:   by ‘virtual beep::Probability beep::GammaDensity::operator()(const beep::Real&) const’
   55 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:29:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:31:43: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   31 | class EdgeDiscPtMapIterator : public std::iterator<std::forward_iterator_tag, T>
      |                                           ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:1:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator(beep::EdgeDiscPtMap<T>*, beep::EdgeDiscretizer::Point)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:42:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   42 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:54:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   54 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In copy constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator(const beep::EdgeDiscPtMapIterator<T>&)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:64:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   64 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh: In constructor ‘beep::EdgeDiscGSR::EdgeDiscGSR(beep::Tree*, beep::EdgeDiscTree*, beep::StrStrMap*, beep::Density2P*, beep::EdgeDiscBDProbs*, beep::UnsignedVector*)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:588:14: warning: ‘beep::EdgeDiscGSR::m_calculatedAtAndBelow’ will be initialized after [-Wreorder]
  588 |         bool m_calculatedAtAndBelow;
      |              ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:583:14: warning:   ‘bool beep::EdgeDiscGSR::m_calculatedAtBars’ [-Wreorder]
  583 |         bool m_calculatedAtBars;
      |              ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:23:5: warning:   when initialized here [-Wreorder]
   23 |     EdgeDiscGSR::EdgeDiscGSR(Tree* G,
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc: In member function ‘void beep::EdgeDiscGSR::convertDensitiesToProbabilities()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:475:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  475 |         for (int i = 0; i < m_G->getNumberOfNodes(); i++) {
      |                         ~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:485:27: warning: variable ‘xpt’ set but not used [-Wunused-but-set-variable]
  485 |                     Point xpt = x.getPt();
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:525:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  525 |         for (int i = 0; i < m_G->getNumberOfNodes(); i++) {
      |                         ~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:528:19: warning: unused variable ‘parent’ [-Wunused-variable]
  528 |             Node *parent = u->getParent();
      |                   ^~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc: In member function ‘beep::Probability beep::EdgeDiscGSR::getTotalPlacementDensity(const beep::Node*)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.cc:897:18: warning: unused variable ‘timeStep’ [-Wunused-variable]
  897 |             Real timeStep = u->isLeaf() ? 1.0 : m_DS->getTimestep(xPoint.first);
      |                  ^~~~~~~~
[ 52%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o -MF CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o.d -o CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochDLTRS.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:359:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C2’ of non-integral type [-fpermissive]
  359 |         static const Real C2 =       1.0 /      5.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:360:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C3’ of non-integral type [-fpermissive]
  360 |         static const Real C3 =       3.0 /     10.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:361:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C4’ of non-integral type [-fpermissive]
  361 |         static const Real C4 =       4.0 /      5.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:362:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C5’ of non-integral type [-fpermissive]
  362 |         static const Real C5 =       8.0 /      9.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:363:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A21’ of non-integral type [-fpermissive]
  363 |         static const Real A21 =      1.0 /      5.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:364:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A31’ of non-integral type [-fpermissive]
  364 |         static const Real A31 =      3.0 /     40.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:365:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A32’ of non-integral type [-fpermissive]
  365 |         static const Real A32 =      9.0 /     40.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:366:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A41’ of non-integral type [-fpermissive]
  366 |         static const Real A41 =     44.0 /     45.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:367:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A42’ of non-integral type [-fpermissive]
  367 |         static const Real A42 =    -56.0 /     15.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:368:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A43’ of non-integral type [-fpermissive]
  368 |         static const Real A43 =     32.0 /      9.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:369:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A51’ of non-integral type [-fpermissive]
  369 |         static const Real A51 =  19372.0 /   6561.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A52’ of non-integral type [-fpermissive]
  370 |     static const Real A52 = -25360.0 /   2187.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A53’ of non-integral type [-fpermissive]
  371 |     static const Real A53 =  64448.0 /   6561.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A54’ of non-integral type [-fpermissive]
  372 |     static const Real A54 =   -212.0 /    729.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A61’ of non-integral type [-fpermissive]
  373 |     static const Real A61 =   9017.0 /   3168.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A62’ of non-integral type [-fpermissive]
  374 |     static const Real A62 =   -355.0 /     33.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A63’ of non-integral type [-fpermissive]
  375 |     static const Real A63 =  46732.0 /   5247.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A64’ of non-integral type [-fpermissive]
  376 |     static const Real A64 =     49.0 /    176.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A65’ of non-integral type [-fpermissive]
  377 |     static const Real A65 =  -5103.0 /  18656.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A71’ of non-integral type [-fpermissive]
  378 |     static const Real A71 =     35.0 /    384.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A73’ of non-integral type [-fpermissive]
  379 |     static const Real A73 =    500.0 /   1113.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A74’ of non-integral type [-fpermissive]
  380 |     static const Real A74 =    125.0 /    192.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A75’ of non-integral type [-fpermissive]
  381 |     static const Real A75 =  -2187.0 /   6784.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A76’ of non-integral type [-fpermissive]
  382 |     static const Real A76 =     11.0 /     84.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E1’ of non-integral type [-fpermissive]
  383 |     static const Real E1 =      71.0 /  57600.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E3’ of non-integral type [-fpermissive]
  384 |     static const Real E3 =     -71.0 /  16695.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E4’ of non-integral type [-fpermissive]
  385 |     static const Real E4 =      71.0 /   1920.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E5’ of non-integral type [-fpermissive]
  386 |     static const Real E5 =  -17253.0 / 339200.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E6’ of non-integral type [-fpermissive]
  387 |     static const Real E6 =      22.0 /    525.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E7’ of non-integral type [-fpermissive]
  388 |     static const Real E7 =      -1.0 /     40.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D1’ of non-integral type [-fpermissive]
  391 |     static const Real D1 =  -12715105075.0 /  11282082432.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D3’ of non-integral type [-fpermissive]
  392 |     static const Real D3 =   87487479700.0 /  32700410799.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D4’ of non-integral type [-fpermissive]
  393 |     static const Real D4 =  -10690763975.0 /   1880347072.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D5’ of non-integral type [-fpermissive]
  394 |     static const Real D5 =  701980252875.0 / 199316789632.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D6’ of non-integral type [-fpermissive]
  395 |     static const Real D6 =   -1453857185.0 /    822651844.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D7’ of non-integral type [-fpermissive]
  396 |     static const Real D7 =      69997945.0 /     29380423.0;
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochTree::MIN_SPLICE_DELTA’ of non-integral type [-fpermissive]
   54 |         static const Real MIN_SPLICE_DELTA = 0.0001;
      |                           ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:50:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochBDTProbs::REL_TOL’ of non-integral type [-fpermissive]
   50 |         static const Real REL_TOL = 1e-6;
      |                           ^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:55:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochBDTProbs::ABS_TOL’ of non-integral type [-fpermissive]
   55 |         static const Real ABS_TOL = 1e-6;
      |                           ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochDLTRS.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:359:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C2’ of non-integral type [-fpermissive]
  359 |         static const Real C2 =       1.0 /      5.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:360:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C3’ of non-integral type [-fpermissive]
  360 |         static const Real C3 =       3.0 /     10.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:361:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C4’ of non-integral type [-fpermissive]
  361 |         static const Real C4 =       4.0 /      5.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:362:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C5’ of non-integral type [-fpermissive]
  362 |         static const Real C5 =       8.0 /      9.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:363:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A21’ of non-integral type [-fpermissive]
  363 |         static const Real A21 =      1.0 /      5.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:364:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A31’ of non-integral type [-fpermissive]
  364 |         static const Real A31 =      3.0 /     40.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:365:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A32’ of non-integral type [-fpermissive]
  365 |         static const Real A32 =      9.0 /     40.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:366:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A41’ of non-integral type [-fpermissive]
  366 |         static const Real A41 =     44.0 /     45.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:367:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A42’ of non-integral type [-fpermissive]
  367 |         static const Real A42 =    -56.0 /     15.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:368:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A43’ of non-integral type [-fpermissive]
  368 |         static const Real A43 =     32.0 /      9.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:369:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A51’ of non-integral type [-fpermissive]
  369 |         static const Real A51 =  19372.0 /   6561.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A52’ of non-integral type [-fpermissive]
  370 |     static const Real A52 = -25360.0 /   2187.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A53’ of non-integral type [-fpermissive]
  371 |     static const Real A53 =  64448.0 /   6561.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A54’ of non-integral type [-fpermissive]
  372 |     static const Real A54 =   -212.0 /    729.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A61’ of non-integral type [-fpermissive]
  373 |     static const Real A61 =   9017.0 /   3168.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A62’ of non-integral type [-fpermissive]
  374 |     static const Real A62 =   -355.0 /     33.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A63’ of non-integral type [-fpermissive]
  375 |     static const Real A63 =  46732.0 /   5247.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A64’ of non-integral type [-fpermissive]
  376 |     static const Real A64 =     49.0 /    176.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A65’ of non-integral type [-fpermissive]
  377 |     static const Real A65 =  -5103.0 /  18656.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A71’ of non-integral type [-fpermissive]
  378 |     static const Real A71 =     35.0 /    384.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A73’ of non-integral type [-fpermissive]
  379 |     static const Real A73 =    500.0 /   1113.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A74’ of non-integral type [-fpermissive]
  380 |     static const Real A74 =    125.0 /    192.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A75’ of non-integral type [-fpermissive]
  381 |     static const Real A75 =  -2187.0 /   6784.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A76’ of non-integral type [-fpermissive]
  382 |     static const Real A76 =     11.0 /     84.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E1’ of non-integral type [-fpermissive]
  383 |     static const Real E1 =      71.0 /  57600.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E3’ of non-integral type [-fpermissive]
  384 |     static const Real E3 =     -71.0 /  16695.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E4’ of non-integral type [-fpermissive]
  385 |     static const Real E4 =      71.0 /   1920.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E5’ of non-integral type [-fpermissive]
  386 |     static const Real E5 =  -17253.0 / 339200.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E6’ of non-integral type [-fpermissive]
  387 |     static const Real E6 =      22.0 /    525.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E7’ of non-integral type [-fpermissive]
  388 |     static const Real E7 =      -1.0 /     40.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D1’ of non-integral type [-fpermissive]
  391 |     static const Real D1 =  -12715105075.0 /  11282082432.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D3’ of non-integral type [-fpermissive]
  392 |     static const Real D3 =   87487479700.0 /  32700410799.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D4’ of non-integral type [-fpermissive]
  393 |     static const Real D4 =  -10690763975.0 /   1880347072.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D5’ of non-integral type [-fpermissive]
  394 |     static const Real D5 =  701980252875.0 / 199316789632.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D6’ of non-integral type [-fpermissive]
  395 |     static const Real D6 =   -1453857185.0 /    822651844.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D7’ of non-integral type [-fpermissive]
  396 |     static const Real D7 =      69997945.0 /     29380423.0;
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:359:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C2’ of non-integral type [-fpermissive]
  359 |         static const Real C2 =       1.0 /      5.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:360:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C3’ of non-integral type [-fpermissive]
  360 |         static const Real C3 =       3.0 /     10.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:361:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C4’ of non-integral type [-fpermissive]
  361 |         static const Real C4 =       4.0 /      5.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:362:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C5’ of non-integral type [-fpermissive]
  362 |         static const Real C5 =       8.0 /      9.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:363:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A21’ of non-integral type [-fpermissive]
  363 |         static const Real A21 =      1.0 /      5.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:364:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A31’ of non-integral type [-fpermissive]
  364 |         static const Real A31 =      3.0 /     40.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:365:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A32’ of non-integral type [-fpermissive]
  365 |         static const Real A32 =      9.0 /     40.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:366:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A41’ of non-integral type [-fpermissive]
  366 |         static const Real A41 =     44.0 /     45.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:367:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A42’ of non-integral type [-fpermissive]
  367 |         static const Real A42 =    -56.0 /     15.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:368:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A43’ of non-integral type [-fpermissive]
  368 |         static const Real A43 =     32.0 /      9.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:369:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A51’ of non-integral type [-fpermissive]
  369 |         static const Real A51 =  19372.0 /   6561.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A52’ of non-integral type [-fpermissive]
  370 |     static const Real A52 = -25360.0 /   2187.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A53’ of non-integral type [-fpermissive]
  371 |     static const Real A53 =  64448.0 /   6561.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A54’ of non-integral type [-fpermissive]
  372 |     static const Real A54 =   -212.0 /    729.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A61’ of non-integral type [-fpermissive]
  373 |     static const Real A61 =   9017.0 /   3168.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A62’ of non-integral type [-fpermissive]
  374 |     static const Real A62 =   -355.0 /     33.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A63’ of non-integral type [-fpermissive]
  375 |     static const Real A63 =  46732.0 /   5247.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A64’ of non-integral type [-fpermissive]
  376 |     static const Real A64 =     49.0 /    176.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A65’ of non-integral type [-fpermissive]
  377 |     static const Real A65 =  -5103.0 /  18656.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A71’ of non-integral type [-fpermissive]
  378 |     static const Real A71 =     35.0 /    384.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A73’ of non-integral type [-fpermissive]
  379 |     static const Real A73 =    500.0 /   1113.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A74’ of non-integral type [-fpermissive]
  380 |     static const Real A74 =    125.0 /    192.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A75’ of non-integral type [-fpermissive]
  381 |     static const Real A75 =  -2187.0 /   6784.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A76’ of non-integral type [-fpermissive]
  382 |     static const Real A76 =     11.0 /     84.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E1’ of non-integral type [-fpermissive]
  383 |     static const Real E1 =      71.0 /  57600.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E3’ of non-integral type [-fpermissive]
  384 |     static const Real E3 =     -71.0 /  16695.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E4’ of non-integral type [-fpermissive]
  385 |     static const Real E4 =      71.0 /   1920.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E5’ of non-integral type [-fpermissive]
  386 |     static const Real E5 =  -17253.0 / 339200.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E6’ of non-integral type [-fpermissive]
  387 |     static const Real E6 =      22.0 /    525.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E7’ of non-integral type [-fpermissive]
  388 |     static const Real E7 =      -1.0 /     40.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D1’ of non-integral type [-fpermissive]
  391 |     static const Real D1 =  -12715105075.0 /  11282082432.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D3’ of non-integral type [-fpermissive]
  392 |     static const Real D3 =   87487479700.0 /  32700410799.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D4’ of non-integral type [-fpermissive]
  393 |     static const Real D4 =  -10690763975.0 /   1880347072.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D5’ of non-integral type [-fpermissive]
  394 |     static const Real D5 =  701980252875.0 / 199316789632.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D6’ of non-integral type [-fpermissive]
  395 |     static const Real D6 =   -1453857185.0 /    822651844.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D7’ of non-integral type [-fpermissive]
  396 |     static const Real D7 =      69997945.0 /     29380423.0;
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochTree::MIN_SPLICE_DELTA’ of non-integral type [-fpermissive]
   54 |         static const Real MIN_SPLICE_DELTA = 0.0001;
      |                           ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:50:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochBDTProbs::REL_TOL’ of non-integral type [-fpermissive]
   50 |         static const Real REL_TOL = 1e-6;
      |                           ^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:55:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochBDTProbs::ABS_TOL’ of non-integral type [-fpermissive]
   55 |         static const Real ABS_TOL = 1e-6;
      |                           ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochTree::MIN_SPLICE_DELTA’ of non-integral type [-fpermissive]
   54 |         static const Real MIN_SPLICE_DELTA = 0.0001;
      |                           ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:50:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochBDTProbs::REL_TOL’ of non-integral type [-fpermissive]
   50 |         static const Real REL_TOL = 1e-6;
      |                           ^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:55:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochBDTProbs::ABS_TOL’ of non-integral type [-fpermissive]
   55 |         static const Real ABS_TOL = 1e-6;
      |                           ^~~~~~~
[ 52%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GammaMap.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GammaMap.cc.o -MF CMakeFiles/prime-phylo.dir/GammaMap.cc.o.d -o CMakeFiles/prime-phylo.dir/GammaMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaMap.cc
[ 53%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o -MF CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o.d -o CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GuestTreeModel.cc
[ 54%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o -MF CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o.d -o CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumerateReconciliationModel.cc
[ 54%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathMCMC.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:49:30: warning: ‘virtual beep::BirthDeathProbs& beep::BirthDeathProbs::operator=(const beep::BirthDeathProbs&)’ was hidden [-Woverloaded-virtual=]
   49 |     virtual BirthDeathProbs& operator=(const BirthDeathProbs& dsp);
      |                              ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.hh:17:9: note:   by ‘beep::fastGEM_BirthDeathProbs& beep::fastGEM_BirthDeathProbs::operator=(const beep::fastGEM_BirthDeathProbs&)’
   17 |   class fastGEM_BirthDeathProbs : public BirthDeathProbs
      |         ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:49:30: warning: ‘virtual beep::BirthDeathProbs& beep::BirthDeathProbs::operator=(const beep::BirthDeathProbs&)’ was hidden [-Woverloaded-virtual=]
   49 |     virtual BirthDeathProbs& operator=(const BirthDeathProbs& dsp);
      |                              ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathMCMC.hh:18:9: note:   by ‘beep::fastGEM_BirthDeathMCMC& beep::fastGEM_BirthDeathMCMC::operator=(const beep::fastGEM_BirthDeathMCMC&)’
   18 |   class fastGEM_BirthDeathMCMC : public StdMCMCModel,
      |         ^~~~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o -MF CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o.d -o CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.cc
[ 55%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/fastGEM.cc.o -MF CMakeFiles/prime-phylo.dir/fastGEM.cc.o.d -o CMakeFiles/prime-phylo.dir/fastGEM.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc
[ 56%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LambdaMap.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LambdaMap.cc.o -MF CMakeFiles/prime-phylo.dir/LambdaMap.cc.o.d -o CMakeFiles/prime-phylo.dir/LambdaMap.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LambdaMap.cc
[ 56%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o -MF CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o.d -o CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MaxReconciledTreeModel.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:49:30: warning: ‘virtual beep::BirthDeathProbs& beep::BirthDeathProbs::operator=(const beep::BirthDeathProbs&)’ was hidden [-Woverloaded-virtual=]
   49 |     virtual BirthDeathProbs& operator=(const BirthDeathProbs& dsp);
      |                              ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.hh:17:9: note:   by ‘beep::fastGEM_BirthDeathProbs& beep::fastGEM_BirthDeathProbs::operator=(const beep::fastGEM_BirthDeathProbs&)’
   17 |   class fastGEM_BirthDeathProbs : public BirthDeathProbs
      |         ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:2:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:49:30: warning: ‘virtual beep::BirthDeathProbs& beep::BirthDeathProbs::operator=(const beep::BirthDeathProbs&)’ was hidden [-Woverloaded-virtual=]
   49 |     virtual BirthDeathProbs& operator=(const BirthDeathProbs& dsp);
      |                              ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM_BirthDeathProbs.hh:17:9: note:   by ‘beep::fastGEM_BirthDeathProbs& beep::fastGEM_BirthDeathProbs::operator=(const beep::fastGEM_BirthDeathProbs&)’
   17 |   class fastGEM_BirthDeathProbs : public BirthDeathProbs
      |         ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function ‘unsigned int beep::fastGEM::calcMaxProb(unsigned int)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:136:21: warning: variable ‘topRateProb’ set but not used [-Wunused-but-set-variable]
  136 |         Probability topRateProb = df->operator()(rate);
      |                     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function ‘void beep::fastGEM::printSa()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:1298:10: warning: variable ‘zeroTotalQuotient’ set but not used [-Wunused-but-set-variable]
 1298 |     Real zeroTotalQuotient = 0.0;
      |          ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function ‘void beep::fastGEM::printLb()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:1325:10: warning: variable ‘zeroTotalQuotient’ set but not used [-Wunused-but-set-variable]
 1325 |     Real zeroTotalQuotient = 0.0;
      |          ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc: In member function ‘void beep::fastGEM::printLt()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/fastGEM.cc:1356:10: warning: variable ‘zeroTotalQuotient’ set but not used [-Wunused-but-set-variable]
 1356 |     Real zeroTotalQuotient = 0.0;
      |          ^~~~~~~~~~~~~~~~~
[ 57%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o -MF CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o.d -o CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/PerturbationObservable.cc
[ 58%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o -MF CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o.d -o CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeModel.cc
[ 58%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o -MF CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o.d -o CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeTimeModel.cc
[ 59%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeTimeMCMC.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciledTreeTimeMCMC.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::LogNormDensity::pi’ of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
[ 59%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o -MF CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o.d -o CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationModel.cc
[ 60%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o -MF CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o.d -o CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationSampler.cc
[ 60%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o -MF CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o.d -o CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeModel.cc
[ 61%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeMCMC.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationSampler.cc: In member function ‘void beep::ReconciliationSampler::setAttributesAndProbabilities()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationSampler.cc:161:17: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
  161 |     Probability p = calculateDataProbability();
      |                 ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeModel.cc: In member function ‘std::string beep::ReconciliationTimeModel::table4os() const’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeModel.cc:319:58: warning: typedef ‘MapIter’ locally defined but not used [-Wunused-local-typedefs]
  319 |     typedef std::map<unsigned, unsigned>::const_iterator MapIter;
      |                                                          ^~~~~~~
[ 62%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o -MF CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o.d -o CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeSampler.cc
[ 62%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o -MF CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o.d -o CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTreeGenerator.cc
[ 63%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o -MF CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o.d -o CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DLRSOrthoCalculator.cc
[ 63%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o -MF CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o.d -o CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SetOfNodes.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeSampler.cc: In member function ‘const std::string beep::ReconciliationTimeSampler::table4os() const’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTimeSampler.cc:422:58: warning: typedef ‘MapIter’ locally defined but not used [-Wunused-local-typedefs]
  422 |     typedef std::map<unsigned, unsigned>::const_iterator MapIter;
      |                                                          ^~~~~~~
[ 64%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TopTimeMCMC.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTreeGenerator.cc: In constructor ‘beep::ReconciliationTreeGenerator::ReconciliationTreeGenerator(beep::BirthDeathProbs&, const std::string&)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationTreeGenerator.cc:31:3: warning: ‘beep::ReconciliationTreeGenerator::R’ is initialized with itself [-Winit-self]
   31 |   ReconciliationTreeGenerator::
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_positive.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DLRSOrthoCalculator.hh:20,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DLRSOrthoCalculator.cc:8:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:55:17: note:   by ‘virtual beep::Probability beep::GammaDensity::operator()(const beep::Real&) const’
   55 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
[ 65%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o -MF CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o.d -o CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridBranchSwapping.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:29,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DLRSOrthoCalculator.hh:22:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:31:43: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   31 | class EdgeDiscPtMapIterator : public std::iterator<std::forward_iterator_tag, T>
      |                                           ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/13/string:47,
                 from /usr/include/c++/13/bits/locale_classes.h:40,
                 from /usr/include/c++/13/bits/ios_base.h:41,
                 from /usr/include/c++/13/ios:44,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/DLRSOrthoCalculator.hh:11:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator(beep::EdgeDiscPtMap<T>*, beep::EdgeDiscretizer::Point)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:42:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   42 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:54:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   54 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In copy constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator(const beep::EdgeDiscPtMapIterator<T>&)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:64:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   64 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridBranchSwapping.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:333:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, int) const’ was hidden [-Woverloaded-virtual=]
  333 |     virtual std::string subtree4os(Node* v, int indent) const;
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:329:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool, bool) const’ was hidden [-Woverloaded-virtual=]
  329 |     virtual std::string subtree4os(Node *v, std::string indent_left,
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:327:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, int, bool, bool, bool, bool) const’ was hidden [-Woverloaded-virtual=]
  327 |     virtual std::string subtree4os(Node *v, int indent, bool useET,
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
[ 65%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTree.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTree.cc.o -MF CMakeFiles/prime-phylo.dir/HybridTree.cc.o.d -o CMakeFiles/prime-phylo.dir/HybridTree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.cc
[ 66%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o -MF CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o.d -o CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:333:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, int) const’ was hidden [-Woverloaded-virtual=]
  333 |     virtual std::string subtree4os(Node* v, int indent) const;
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:329:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool, bool) const’ was hidden [-Woverloaded-virtual=]
  329 |     virtual std::string subtree4os(Node *v, std::string indent_left,
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:327:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, int, bool, bool, bool, bool) const’ was hidden [-Woverloaded-virtual=]
  327 |     virtual std::string subtree4os(Node *v, int indent, bool useET,
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.hh:64:21: warning: ‘virtual beep::TreeIO& beep::TreeIO::operator=(const beep::TreeIO&)’ was hidden [-Woverloaded-virtual=]
   64 |     virtual TreeIO& operator=(const TreeIO &io);
      |                     ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.hh:39:19: note:   by ‘beep::HybridTreeIO& beep::HybridTreeIO::operator=(const beep::HybridTreeIO&)’
   39 |     HybridTreeIO& operator=(const HybridTreeIO& io);
      |                   ^~~~~~~~
[ 66%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o -MF CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o.d -o CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeInputOutput.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.cc: In member function ‘beep::Tree& beep::HybridTree::getBinaryTree() const’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.cc:367:40: warning: ISO C++ forbids comparison between pointer and integer [-fpermissive]
  367 |     if(rootNode && bTree.getRootNode() == false)
      |                    ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LambdaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LambdaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeInputOutput.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeInputOutput.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
[ 67%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o -MF CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o.d -o CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDHybridTreeGenerator.cc
[ 67%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o -MF CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o.d -o CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridProbs.cc
[ 68%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridMCMC.cc
[ 69%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o -MF CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o.d -o CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridBDTreeGenerator.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LambdaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeGenerator.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDHybridTreeGenerator.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDHybridTreeGenerator.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDHybridTreeGenerator.cc:6:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridProbs.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridProbs.cc:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:49:30: warning: ‘virtual beep::BirthDeathProbs& beep::BirthDeathProbs::operator=(const beep::BirthDeathProbs&)’ was hidden [-Woverloaded-virtual=]
   49 |     virtual BirthDeathProbs& operator=(const BirthDeathProbs& dsp);
      |                              ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridProbs.hh:33:38: note:   by ‘virtual beep::BirthDeathInHybridProbs& beep::BirthDeathInHybridProbs::operator=(const beep::BirthDeathInHybridProbs&)’
   33 |     virtual BirthDeathInHybridProbs& operator=(const BirthDeathInHybridProbs& dsp);
      |                                      ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridProbs.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridProbs.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:49:30: warning: ‘virtual beep::BirthDeathProbs& beep::BirthDeathProbs::operator=(const beep::BirthDeathProbs&)’ was hidden [-Woverloaded-virtual=]
   49 |     virtual BirthDeathProbs& operator=(const BirthDeathProbs& dsp);
      |                              ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridProbs.hh:33:38: note:   by ‘virtual beep::BirthDeathInHybridProbs& beep::BirthDeathInHybridProbs::operator=(const beep::BirthDeathInHybridProbs&)’
   33 |     virtual BirthDeathInHybridProbs& operator=(const BirthDeathInHybridProbs& dsp);
      |                                      ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridProbs.hh:33:38: warning: ‘virtual beep::BirthDeathInHybridProbs& beep::BirthDeathInHybridProbs::operator=(const beep::BirthDeathInHybridProbs&)’ was hidden [-Woverloaded-virtual=]
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridMCMC.hh:22:9: note:   by ‘beep::BirthDeathInHybridMCMC& beep::BirthDeathInHybridMCMC::operator=(const beep::BirthDeathInHybridMCMC&)’
   22 |   class BirthDeathInHybridMCMC : public StdMCMCModel,
      |         ^~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathInHybridMCMC.cc:6:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BDTreeGenerator.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridBDTreeGenerator.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridBDTreeGenerator.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridBDTreeGenerator.hh:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
[ 69%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeMCMC.cc
[ 70%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o -MF CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o.d -o CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeModel.cc
[ 70%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeMCMC.cc
[ 71%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o -MF CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o.d -o CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeModel.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeModel.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeModel.cc:6:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:84:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::NormalDensity::pi’ of non-integral type [-fpermissive]
   84 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/NormalDensity.hh:54:17: note:   by ‘virtual beep::Probability beep::NormalDensity::operator()(const beep::Real&) const’
   54 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/NodeNodeMap.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeModel.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeMCMC.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeMCMC.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:333:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, int) const’ was hidden [-Woverloaded-virtual=]
  333 |     virtual std::string subtree4os(Node* v, int indent) const;
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:329:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool, bool) const’ was hidden [-Woverloaded-virtual=]
  329 |     virtual std::string subtree4os(Node *v, std::string indent_left,
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:327:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, int, bool, bool, bool, bool) const’ was hidden [-Woverloaded-virtual=]
  327 |     virtual std::string subtree4os(Node *v, int indent, bool useET,
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeModel.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridGuestTreeModel.cc:8:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeMCMC.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridHostTreeMCMC.cc:6:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.hh:64:21: warning: ‘virtual beep::TreeIO& beep::TreeIO::operator=(const beep::TreeIO&)’ was hidden [-Woverloaded-virtual=]
   64 |     virtual TreeIO& operator=(const TreeIO &io);
      |                     ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.hh:39:19: note:   by ‘beep::HybridTreeIO& beep::HybridTreeIO::operator=(const beep::HybridTreeIO&)’
   39 |     HybridTreeIO& operator=(const HybridTreeIO& io);
      |                   ^~~~~~~~
[ 71%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeMCMC.cc
[ 72%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o -MF CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o.d -o CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeModel.cc
[ 73%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o -MF CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o.d -o CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/CacheSubstitutionModel.cc
[ 73%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o -MF CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o.d -o CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.cc
In file included from /usr/include/c++/13/ext/hash_map:60,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.cc:1:
/usr/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LambdaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationModel.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GuestTreeModel.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeModel.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeMCMC.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeMCMC.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeMCMC.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
[ 74%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MatrixCache.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MatrixCache.cc.o -MF CMakeFiles/prime-phylo.dir/MatrixCache.cc.o.d -o CMakeFiles/prime-phylo.dir/MatrixCache.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MatrixCache.cc
[ 74%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o -MF CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o.d -o CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TransitionHandler.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LambdaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaMap.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/ReconciliationModel.hh:8,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GuestTreeModel.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeModel.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeModel.cc:1:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EnumHybridGuestTreeModel.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/CacheSubstitutionModel.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:76:18: warning: ‘virtual void beep::EdgeWeightHandler::init(beep::EdgeWeightModel&)’ was hidden [-Woverloaded-virtual=]
   76 |     virtual void init(EdgeWeightModel& erm);
      |                  ^~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:140:18: note:   by ‘virtual void beep::EdgeTimeRateHandler::init(beep::EdgeRateModel&)’
  140 |     virtual void init(EdgeRateModel& erm);
      |                  ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/CacheSubstitutionModel.cc:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::SiteRateHandler::MAX’ of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.hh:5:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SubstitutionModel.hh:131:17: warning: ‘virtual std::string beep::SubstitutionModel::print() const’ was hidden [-Woverloaded-virtual=]
  131 |     std::string print() const;
      |                 ^~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.hh:147:17: note:   by ‘std::string beep::FastCacheSubstitutionModel::print(bool) const’
  147 |     std::string print(bool estimateRates = false) const;
      |                 ^~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:76:18: warning: ‘virtual void beep::EdgeWeightHandler::init(beep::EdgeWeightModel&)’ was hidden [-Woverloaded-virtual=]
   76 |     virtual void init(EdgeWeightModel& erm);
      |                  ^~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:140:18: note:   by ‘virtual void beep::EdgeTimeRateHandler::init(beep::EdgeRateModel&)’
  140 |     virtual void init(EdgeRateModel& erm);
      |                  ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/FastCacheSubstitutionModel.cc:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::SiteRateHandler::MAX’ of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
[ 75%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o -MF CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o.d -o CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/MatrixTransitionHandler.cc
[ 75%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SeqIO.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SeqIO.cc.o -MF CMakeFiles/prime-phylo.dir/SeqIO.cc.o.d -o CMakeFiles/prime-phylo.dir/SeqIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SeqIO.cc
[ 76%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o -MF CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o.d -o CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceGenerator.cc
[ 77%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceType.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceType.cc.o -MF CMakeFiles/prime-phylo.dir/SequenceType.cc.o.d -o CMakeFiles/prime-phylo.dir/SequenceType.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceType.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceGenerator.hh:10,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceGenerator.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:76:18: warning: ‘virtual void beep::EdgeWeightHandler::init(beep::EdgeWeightModel&)’ was hidden [-Woverloaded-virtual=]
   76 |     virtual void init(EdgeWeightModel& erm);
      |                  ^~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:140:18: note:   by ‘virtual void beep::EdgeTimeRateHandler::init(beep::EdgeRateModel&)’
  140 |     virtual void init(EdgeRateModel& erm);
      |                  ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceGenerator.hh:15:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::SiteRateHandler::MAX’ of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
[ 77%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceData.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SequenceData.cc.o -MF CMakeFiles/prime-phylo.dir/SequenceData.cc.o.d -o CMakeFiles/prime-phylo.dir/SequenceData.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceType.cc:270:10: warning: ‘std::ostream& beep::operator<<(std::ostream&, const SequenceType&)’ has not been declared within ‘beep’
  270 | ostream& beep::operator<<(ostream& os, const SequenceType& dt)
      |          ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceType.cc:8:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceType.hh:56:26: note: only here as a ‘friend’
   56 |     friend std::ostream& operator<<(std::ostream& os, const SequenceType& dt);
      |                          ^~~~~~~~
[ 78%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o -MF CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o.d -o CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SubstitutionModel.cc
[ 78%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o -MF CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o.d -o CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SubstitutionMCMC.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc: In member function ‘std::map<char, double> beep::SequenceData::getBaseFrequencies()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc:288:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  288 |             for (int i = 0; i < seqType.alphabetSize(); i++)
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SequenceData.cc:303:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  303 |                 for (int j = 0; j < seq.length(); j++) {
      |                                 ~~^~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SubstitutionModel.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:76:18: warning: ‘virtual void beep::EdgeWeightHandler::init(beep::EdgeWeightModel&)’ was hidden [-Woverloaded-virtual=]
   76 |     virtual void init(EdgeWeightModel& erm);
      |                  ^~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:140:18: note:   by ‘virtual void beep::EdgeTimeRateHandler::init(beep::EdgeRateModel&)’
  140 |     virtual void init(EdgeRateModel& erm);
      |                  ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/SubstitutionModel.cc:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::SiteRateHandler::MAX’ of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
[ 79%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_Vector.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_Vector.cc.o -MF CMakeFiles/prime-phylo.dir/LA_Vector.cc.o.d -o CMakeFiles/prime-phylo.dir/LA_Vector.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Vector.cc
[ 80%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o -MF CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o.d -o CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc
[ 80%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -fPIC -MD -MT src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o -MF CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o.d -o CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_DiagonalMatrix.cc
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc: In constructor ‘beep::LA_Matrix::LA_Matrix()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc:19:5: warning: ‘beep::LA_Matrix::dim’ is initialized with itself [-Winit-self]
   19 |     LA_Matrix::LA_Matrix()
      |     ^~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc: In member function ‘beep::LA_Matrix::LA_Matrix()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LA_Matrix.cc:20:13: warning: ‘this_17(D)->dim’ is used uninitialized [-Wuninitialized]
   20 |       : dim(dim),
      |             ^~~
[ 81%] Linking CXX shared library libprime-phylo.so
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime && /usr/bin/cmake -E cmake_link_script CMakeFiles/prime-phylo.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libprime-phylo.so -o libprime-phylo.so "CMakeFiles/prime-phylo.dir/NHXnode.c.o" "CMakeFiles/prime-phylo.dir/NHXtree.c.o" "CMakeFiles/prime-phylo.dir/NHXannotation.c.o" "CMakeFiles/prime-phylo.dir/lexer.c.o" "CMakeFiles/prime-phylo.dir/NHXparse.c.o" "CMakeFiles/prime-phylo.dir/AnError.cc.o" "CMakeFiles/prime-phylo.dir/Beep.cc.o" "CMakeFiles/prime-phylo.dir/BeepOption.cc.o" "CMakeFiles/prime-phylo.dir/Hacks.cc.o" "CMakeFiles/prime-phylo.dir/ODESolver.cc.o" "CMakeFiles/prime-phylo.dir/PRNG.cc.o" "CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o" "CMakeFiles/prime-phylo.dir/ProbabilityModel.cc.o" "CMakeFiles/prime-phylo.dir/DiscreteGamma.cc.o" "CMakeFiles/prime-phylo.dir/Probability.cc.o" "CMakeFiles/prime-phylo.dir/Tokenizer.cc.o" "CMakeFiles/prime-phylo.dir/TimeEstimator.cc.o" "CMakeFiles/prime-phylo.dir/BranchSwapping.cc.o" "CMakeFiles/prime-phylo.dir/DiscTree.cc.o" "CMakeFiles/prime-phylo.dir/EdgeDiscPtMaps.cc.o" "CMakeFiles/prime-phylo.dir/EdgeDiscTree.cc.o" "CMakeFiles/prime-phylo.dir/EpochPtMaps.cc.o" "CMakeFiles/prime-phylo.dir/EpochPtSet.cc.o" "CMakeFiles/prime-phylo.dir/EpochTree.cc.o" "CMakeFiles/prime-phylo.dir/InvMRCA.cc.o" "CMakeFiles/prime-phylo.dir/Node.cc.o" "CMakeFiles/prime-phylo.dir/NodeMap.cc.o" "CMakeFiles/prime-phylo.dir/NodeNodeMap.cc.o" "CMakeFiles/prime-phylo.dir/RandomTreeGenerator.cc.o" "CMakeFiles/prime-phylo.dir/StrStrMap.cc.o" "CMakeFiles/prime-phylo.dir/Tree.cc.o" "CMakeFiles/prime-phylo.dir/TreeAnalysis.cc.o" 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"CMakeFiles/prime-phylo.dir/NormalDensity.cc.o" "CMakeFiles/prime-phylo.dir/UniformDensity.cc.o" "CMakeFiles/prime-phylo.dir/VarRateModel.cc.o" "CMakeFiles/prime-phylo.dir/SiteRateHandler.cc.o" "CMakeFiles/prime-phylo.dir/DummyMCMC.cc.o" "CMakeFiles/prime-phylo.dir/MCMCModel.cc.o" "CMakeFiles/prime-phylo.dir/StdMCMCModel.cc.o" "CMakeFiles/prime-phylo.dir/MCMCObject.cc.o" "CMakeFiles/prime-phylo.dir/SimpleMCMC.cc.o" "CMakeFiles/prime-phylo.dir/SimpleMCMCPostSample.cc.o" "CMakeFiles/prime-phylo.dir/SimpleML.cc.o" "CMakeFiles/prime-phylo.dir/mcmc/MCMCSampler.cc.o" "CMakeFiles/prime-phylo.dir/mcmc/GSRSampler.cc.o" "CMakeFiles/prime-phylo.dir/mcmc/PosteriorSampler.cc.o" "CMakeFiles/prime-phylo.dir/SimpleObserver.cc.o" "CMakeFiles/prime-phylo.dir/MpiMCMC.cc.o" "CMakeFiles/prime-phylo.dir/MultiGSR.cc.o" "CMakeFiles/prime-phylo.dir/MpiMultiGSR.cc.o" "CMakeFiles/prime-phylo.dir/BDTreeGenerator.cc.o" "CMakeFiles/prime-phylo.dir/BirthDeathMCMC.cc.o" "CMakeFiles/prime-phylo.dir/BirthDeathProbs.cc.o" "CMakeFiles/prime-phylo.dir/CongruentGuestTreeTimeMCMC.cc.o" "CMakeFiles/prime-phylo.dir/DiscBirthDeathProbs.cc.o" "CMakeFiles/prime-phylo.dir/EdgeDiscBDMCMC.cc.o" "CMakeFiles/prime-phylo.dir/EdgeDiscBDProbs.cc.o" "CMakeFiles/prime-phylo.dir/EdgeDiscGSR.cc.o" "CMakeFiles/prime-phylo.dir/EpochBDTMCMC.cc.o" "CMakeFiles/prime-phylo.dir/EpochBDTProbs.cc.o" "CMakeFiles/prime-phylo.dir/EpochDLTRS.cc.o" "CMakeFiles/prime-phylo.dir/GammaMap.cc.o" "CMakeFiles/prime-phylo.dir/GuestTreeModel.cc.o" "CMakeFiles/prime-phylo.dir/EnumerateReconciliationModel.cc.o" "CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathMCMC.cc.o" "CMakeFiles/prime-phylo.dir/fastGEM_BirthDeathProbs.cc.o" "CMakeFiles/prime-phylo.dir/fastGEM.cc.o" "CMakeFiles/prime-phylo.dir/LambdaMap.cc.o" "CMakeFiles/prime-phylo.dir/MaxReconciledTreeModel.cc.o" "CMakeFiles/prime-phylo.dir/PerturbationObservable.cc.o" "CMakeFiles/prime-phylo.dir/ReconciledTreeModel.cc.o" "CMakeFiles/prime-phylo.dir/ReconciledTreeTimeModel.cc.o" "CMakeFiles/prime-phylo.dir/ReconciledTreeTimeMCMC.cc.o" "CMakeFiles/prime-phylo.dir/ReconciliationModel.cc.o" "CMakeFiles/prime-phylo.dir/ReconciliationSampler.cc.o" "CMakeFiles/prime-phylo.dir/ReconciliationTimeModel.cc.o" "CMakeFiles/prime-phylo.dir/ReconciliationTimeMCMC.cc.o" "CMakeFiles/prime-phylo.dir/ReconciliationTimeSampler.cc.o" "CMakeFiles/prime-phylo.dir/ReconciliationTreeGenerator.cc.o" "CMakeFiles/prime-phylo.dir/DLRSOrthoCalculator.cc.o" "CMakeFiles/prime-phylo.dir/SetOfNodes.cc.o" "CMakeFiles/prime-phylo.dir/TopTimeMCMC.cc.o" "CMakeFiles/prime-phylo.dir/HybridBranchSwapping.cc.o" "CMakeFiles/prime-phylo.dir/HybridTree.cc.o" "CMakeFiles/prime-phylo.dir/HybridTreeIO.cc.o" "CMakeFiles/prime-phylo.dir/HybridTreeInputOutput.cc.o" "CMakeFiles/prime-phylo.dir/BDHybridTreeGenerator.cc.o" "CMakeFiles/prime-phylo.dir/BirthDeathInHybridProbs.cc.o" "CMakeFiles/prime-phylo.dir/BirthDeathInHybridMCMC.cc.o" "CMakeFiles/prime-phylo.dir/HybridBDTreeGenerator.cc.o" "CMakeFiles/prime-phylo.dir/HybridGuestTreeMCMC.cc.o" "CMakeFiles/prime-phylo.dir/HybridGuestTreeModel.cc.o" "CMakeFiles/prime-phylo.dir/HybridHostTreeMCMC.cc.o" "CMakeFiles/prime-phylo.dir/HybridHostTreeModel.cc.o" "CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeMCMC.cc.o" "CMakeFiles/prime-phylo.dir/EnumHybridGuestTreeModel.cc.o" "CMakeFiles/prime-phylo.dir/CacheSubstitutionModel.cc.o" "CMakeFiles/prime-phylo.dir/FastCacheSubstitutionModel.cc.o" "CMakeFiles/prime-phylo.dir/MatrixCache.cc.o" "CMakeFiles/prime-phylo.dir/TransitionHandler.cc.o" "CMakeFiles/prime-phylo.dir/MatrixTransitionHandler.cc.o" "CMakeFiles/prime-phylo.dir/SeqIO.cc.o" "CMakeFiles/prime-phylo.dir/SequenceGenerator.cc.o" "CMakeFiles/prime-phylo.dir/SequenceType.cc.o" "CMakeFiles/prime-phylo.dir/SequenceData.cc.o" "CMakeFiles/prime-phylo.dir/SubstitutionModel.cc.o" "CMakeFiles/prime-phylo.dir/SubstitutionMCMC.cc.o" "CMakeFiles/prime-phylo.dir/LA_Vector.cc.o" "CMakeFiles/prime-phylo.dir/LA_Matrix.cc.o" "CMakeFiles/prime-phylo.dir/LA_DiagonalMatrix.cc.o"   -L/usr/lib/s390x-linux-gnu/liblapack.so  -L/usr/lib/s390x-linux-gnu/libblas.so  -Wl,-rpath,/usr/lib/s390x-linux-gnu/liblapack.so:/usr/lib/s390x-linux-gnu/libblas.so:/usr/lib/s390x-linux-gnu/openmpi/lib:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile: -llapack -lblas -lxml2 /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libboost_mpi.so.1.83.0 /usr/lib/s390x-linux-gnu/libboost_serialization.so.1.83.0 ../sfile/libprime-phylo-sfile.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 81%] Built target prime-phylo
make  -f src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build.make src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/depend
make  -f src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/build.make src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/depend
make  -f src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/build.make src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/depend
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cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeDLRS /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/DependInfo.cmake "--color="
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeDTLSR /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeDTLSR/CMakeFiles/primeDTLSR.dir/DependInfo.cmake "--color="
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[ 82%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM
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[ 83%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize
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[ 83%] Building CXX object src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/primeDLRS.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeDLRS && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeDLRS -I/<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -MD -MT src/cxx/applications/primeDLRS/CMakeFiles/primeDLRS.dir/primeDLRS.cc.o -MF CMakeFiles/primeDLRS.dir/primeDLRS.cc.o.d -o CMakeFiles/primeDLRS.dir/primeDLRS.cc.o -c /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/applications/primeGEM /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/DependInfo.cmake "--color="
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/treesize /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize/CMakeFiles/treesize.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
make  -f src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build.make src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
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make  -f src/cxx/tools/treesize/CMakeFiles/treesize.dir/build.make src/cxx/tools/treesize/CMakeFiles/treesize.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 83%] Building CXX object src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/troyo.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM -I/<<PKGBUILDDIR>>/src/cxx/applications/primeGEM -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -MD -MT src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/troyo.cc.o -MF CMakeFiles/primeGEM.dir/troyo.cc.o.d -o CMakeFiles/primeGEM.dir/troyo.cc.o -c /<<PKGBUILDDIR>>/src/cxx/applications/primeGEM/troyo.cc
[ 83%] Building CXX object src/cxx/tools/treesize/CMakeFiles/treesize.dir/treesize.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize -I/<<PKGBUILDDIR>>/src/cxx/tools/treesize -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -MD -MT src/cxx/tools/treesize/CMakeFiles/treesize.dir/treesize.cc.o -MF CMakeFiles/treesize.dir/treesize.cc.o.d -o CMakeFiles/treesize.dir/treesize.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc:8:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc: In function ‘int main(int, char**)’:
/<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc:55:13: warning: enumeration value ‘input_format__NULL’ not handled in switch [-Wswitch]
   55 |       switch(args_info.input_format_arg)
      |             ^
/<<PKGBUILDDIR>>/src/cxx/tools/treesize/treesize.cc:90:18: warning: catching polymorphic type ‘class beep::AnError’ by value [-Wcatch-value=]
   90 |   catch (AnError e) {
      |                  ^
[ 84%] Building C object src/cxx/tools/treesize/CMakeFiles/treesize.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize -I/<<PKGBUILDDIR>>/src/cxx/tools/treesize -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -MD -MT src/cxx/tools/treesize/CMakeFiles/treesize.dir/cmdline.c.o -MF CMakeFiles/treesize.dir/cmdline.c.o.d -o CMakeFiles/treesize.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize/cmdline.c
[ 85%] Linking CXX executable treesize
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/treesize && /usr/bin/cmake -E cmake_link_script CMakeFiles/treesize.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/treesize.dir/treesize.cc.o CMakeFiles/treesize.dir/cmdline.c.o -o treesize  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime:/usr/lib/s390x-linux-gnu/openmpi/lib:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/s390x-linux-gnu/libboost_mpi.so.1.83.0 /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libboost_serialization.so.1.83.0 ../../libraries/sfile/libprime-phylo-sfile.so 
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:76:18: warning: ‘virtual void beep::EdgeWeightHandler::init(beep::EdgeWeightModel&)’ was hidden [-Woverloaded-virtual=]
   76 |     virtual void init(EdgeWeightModel& erm);
      |                  ^~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:140:18: note:   by ‘virtual void beep::EdgeTimeRateHandler::init(beep::EdgeRateModel&)’
  140 |     virtual void init(EdgeRateModel& erm);
      |                  ^~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochPtMaps.hh:9,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochDLTRS.hh:11,
                 from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:11:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochTree.hh:54:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochTree::MIN_SPLICE_DELTA’ of non-integral type [-fpermissive]
   54 |         static const Real MIN_SPLICE_DELTA = 0.0001;
      |                           ^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:13:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:359:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C2’ of non-integral type [-fpermissive]
  359 |         static const Real C2 =       1.0 /      5.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:360:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C3’ of non-integral type [-fpermissive]
  360 |         static const Real C3 =       3.0 /     10.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:361:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C4’ of non-integral type [-fpermissive]
  361 |         static const Real C4 =       4.0 /      5.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:362:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::C5’ of non-integral type [-fpermissive]
  362 |         static const Real C5 =       8.0 /      9.0;
      |                           ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:363:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A21’ of non-integral type [-fpermissive]
  363 |         static const Real A21 =      1.0 /      5.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:364:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A31’ of non-integral type [-fpermissive]
  364 |         static const Real A31 =      3.0 /     40.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:365:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A32’ of non-integral type [-fpermissive]
  365 |         static const Real A32 =      9.0 /     40.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:366:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A41’ of non-integral type [-fpermissive]
  366 |         static const Real A41 =     44.0 /     45.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:367:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A42’ of non-integral type [-fpermissive]
  367 |         static const Real A42 =    -56.0 /     15.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:368:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A43’ of non-integral type [-fpermissive]
  368 |         static const Real A43 =     32.0 /      9.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:369:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A51’ of non-integral type [-fpermissive]
  369 |         static const Real A51 =  19372.0 /   6561.0;
      |                           ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:370:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A52’ of non-integral type [-fpermissive]
  370 |     static const Real A52 = -25360.0 /   2187.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:371:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A53’ of non-integral type [-fpermissive]
  371 |     static const Real A53 =  64448.0 /   6561.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:372:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A54’ of non-integral type [-fpermissive]
  372 |     static const Real A54 =   -212.0 /    729.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:373:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A61’ of non-integral type [-fpermissive]
  373 |     static const Real A61 =   9017.0 /   3168.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:374:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A62’ of non-integral type [-fpermissive]
  374 |     static const Real A62 =   -355.0 /     33.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:375:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A63’ of non-integral type [-fpermissive]
  375 |     static const Real A63 =  46732.0 /   5247.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:376:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A64’ of non-integral type [-fpermissive]
  376 |     static const Real A64 =     49.0 /    176.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:377:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A65’ of non-integral type [-fpermissive]
  377 |     static const Real A65 =  -5103.0 /  18656.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:378:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A71’ of non-integral type [-fpermissive]
  378 |     static const Real A71 =     35.0 /    384.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:379:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A73’ of non-integral type [-fpermissive]
  379 |     static const Real A73 =    500.0 /   1113.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:380:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A74’ of non-integral type [-fpermissive]
  380 |     static const Real A74 =    125.0 /    192.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:381:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A75’ of non-integral type [-fpermissive]
  381 |     static const Real A75 =  -2187.0 /   6784.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:382:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::A76’ of non-integral type [-fpermissive]
  382 |     static const Real A76 =     11.0 /     84.0;
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:383:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E1’ of non-integral type [-fpermissive]
  383 |     static const Real E1 =      71.0 /  57600.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:384:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E3’ of non-integral type [-fpermissive]
  384 |     static const Real E3 =     -71.0 /  16695.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:385:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E4’ of non-integral type [-fpermissive]
  385 |     static const Real E4 =      71.0 /   1920.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:386:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E5’ of non-integral type [-fpermissive]
  386 |     static const Real E5 =  -17253.0 / 339200.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:387:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E6’ of non-integral type [-fpermissive]
  387 |     static const Real E6 =      22.0 /    525.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:388:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::E7’ of non-integral type [-fpermissive]
  388 |     static const Real E7 =      -1.0 /     40.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:391:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D1’ of non-integral type [-fpermissive]
  391 |     static const Real D1 =  -12715105075.0 /  11282082432.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:392:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D3’ of non-integral type [-fpermissive]
  392 |     static const Real D3 =   87487479700.0 /  32700410799.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:393:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D4’ of non-integral type [-fpermissive]
  393 |     static const Real D4 =  -10690763975.0 /   1880347072.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:394:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D5’ of non-integral type [-fpermissive]
  394 |     static const Real D5 =  701980252875.0 / 199316789632.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:395:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D6’ of non-integral type [-fpermissive]
  395 |     static const Real D6 =   -1453857185.0 /    822651844.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/ODESolver.hh:396:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::ODESolver::D7’ of non-integral type [-fpermissive]
  396 |     static const Real D7 =      69997945.0 /     29380423.0;
      |                       ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:50:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochBDTProbs::REL_TOL’ of non-integral type [-fpermissive]
   50 |         static const Real REL_TOL = 1e-6;
      |                           ^~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EpochBDTProbs.hh:55:27: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::EpochBDTProbs::ABS_TOL’ of non-integral type [-fpermissive]
   55 |         static const Real ABS_TOL = 1e-6;
      |                           ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_positive.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:15:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:55:17: note:   by ‘virtual beep::Probability beep::GammaDensity::operator()(const beep::Real&) const’
   55 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:16:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:89:25: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const double beep::InvGaussDensity::pi’ of non-integral type [-fpermissive]
   89 |     static const double pi = 3.14159265358979; //!< math.constant \f$\pi\f$
      |                         ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:55:17: note:   by ‘virtual beep::Probability beep::InvGaussDensity::operator()(const beep::Real&) const’
   55 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:17:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::LogNormDensity::pi’ of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathMCMC.hh:7,
                 from /<<PKGBUILDDIR>>/src/cxx/applications/primeGEM/troyo.cc:2:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathProbs.hh:49:30: warning: ‘virtual beep::BirthDeathProbs& beep::BirthDeathProbs::operator=(const beep::BirthDeathProbs&)’ was hidden [-Woverloaded-virtual=]
   49 |     virtual BirthDeathProbs& operator=(const BirthDeathProbs& dsp);
      |                              ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/BirthDeathMCMC.hh:23:9: note:   by ‘beep::BirthDeathMCMC& beep::BirthDeathMCMC::operator=(const beep::BirthDeathMCMC&)’
   23 |   class BirthDeathMCMC : public StdMCMCModel,
      |         ^~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:23:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::SiteRateHandler::MAX’ of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/applications/primeGEM/troyo.cc: In function ‘int main(int, char**)’:
/<<PKGBUILDDIR>>/src/cxx/applications/primeGEM/troyo.cc:197:25: warning: catching polymorphic type ‘class beep::AnError’ by value [-Wcatch-value=]
  197 |           catch(AnError e)
      |                         ^
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDTLSR/idolatrous.cc:28:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/UniformDensity.hh:63:17: note:   by ‘virtual beep::Probability beep::UniformDensity::operator()(const beep::Real&) const’
   63 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_positive.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:28,
                 from /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/GammaDensity.hh:55:17: note:   by ‘virtual beep::Probability beep::GammaDensity::operator()(const beep::Real&) const’
   55 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscGSR.hh:29:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:31:43: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   31 | class EdgeDiscPtMapIterator : public std::iterator<std::forward_iterator_tag, T>
      |                                           ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/algorithm:60,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepOption.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc:1:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator(beep::EdgeDiscPtMap<T>*, beep::EdgeDiscretizer::Point)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:42:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   42 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator()’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:54:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   54 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh: In copy constructor ‘beep::EdgeDiscPtMapIterator<T>::EdgeDiscPtMapIterator(const beep::EdgeDiscPtMapIterator<T>&)’:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeDiscPtMapIterator.hh:64:22: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   64 |                 std::iterator<std::forward_iterator_tag, T>(),
      |                      ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc:10:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh: At global scope:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:76:18: warning: ‘virtual void beep::EdgeWeightHandler::init(beep::EdgeWeightModel&)’ was hidden [-Woverloaded-virtual=]
   76 |     virtual void init(EdgeWeightModel& erm);
      |                  ^~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/EdgeWeightHandler.hh:140:18: note:   by ‘virtual void beep::EdgeTimeRateHandler::init(beep::EdgeRateModel&)’
  140 |     virtual void init(EdgeRateModel& erm);
      |                  ^~~~
[ 85%] Built target treesize
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc:13:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:89:25: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const double beep::InvGaussDensity::pi’ of non-integral type [-fpermissive]
   89 |     static const double pi = 3.14159265358979; //!< math.constant \f$\pi\f$
      |                         ^~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/InvGaussDensity.hh:55:17: note:   by ‘virtual beep::Probability beep::InvGaussDensity::operator()(const beep::Real&) const’
   55 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
make  -f src/cxx/tools/showtree/CMakeFiles/showtree.dir/build.make src/cxx/tools/showtree/CMakeFiles/showtree.dir/depend
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc:14:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/LogNormDensity.hh:81:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::LogNormDensity::pi’ of non-integral type [-fpermissive]
   81 |     static const Real pi = 3.14159265358979; //! math. constant \f$ \pi \f$.
      |                       ^~
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 85%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/showtree /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree/CMakeFiles/showtree.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
make  -f src/cxx/tools/showtree/CMakeFiles/showtree.dir/build.make src/cxx/tools/showtree/CMakeFiles/showtree.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 86%] Building CXX object src/cxx/tools/showtree/CMakeFiles/showtree.dir/showtree.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree -I/<<PKGBUILDDIR>>/src/cxx/tools/showtree -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -MD -MT src/cxx/tools/showtree/CMakeFiles/showtree.dir/showtree.cc.o -MF CMakeFiles/showtree.dir/showtree.cc.o.d -o CMakeFiles/showtree.dir/showtree.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc:22:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/SiteRateHandler.hh:83:23: warning: ‘constexpr’ needed for in-class initialization of static data member ‘const beep::Real beep::SiteRateHandler::MAX’ of non-integral type [-fpermissive]
   83 |     static const Real MAX = 1e10; //!< rates do not change for alpha > MAX.
      |                       ^~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Density2P_common.hh:52:17: warning: ‘virtual beep::Probability beep::Density2P_common::operator()(const beep::Real&, const beep::Real&) const’ was hidden [-Woverloaded-virtual=]
   52 |     Probability operator()(const Real& x, const Real& interval) const;
      |                 ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/applications/primeDLRS/primeDLRS.cc:28:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/UniformDensity.hh:63:17: note:   by ‘virtual beep::Probability beep::UniformDensity::operator()(const beep::Real&) const’
   63 |     Probability operator()(const Real& x) const;
      |                 ^~~~~~~~
[ 87%] Building C object src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM -I/<<PKGBUILDDIR>>/src/cxx/applications/primeGEM -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -MD -MT src/cxx/applications/primeGEM/CMakeFiles/primeGEM.dir/cmdline.c.o -MF CMakeFiles/primeGEM.dir/cmdline.c.o.d -o CMakeFiles/primeGEM.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM/cmdline.c
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc:3:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.hh:64:21: warning: ‘virtual beep::TreeIO& beep::TreeIO::operator=(const beep::TreeIO&)’ was hidden [-Woverloaded-virtual=]
   64 |     virtual TreeIO& operator=(const TreeIO &io);
      |                     ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTreeIO.hh:39:19: note:   by ‘beep::HybridTreeIO& beep::HybridTreeIO::operator=(const beep::HybridTreeIO&)’
   39 |     HybridTreeIO& operator=(const HybridTreeIO& io);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:4,
                 from /<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc:4:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:333:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, int) const’ was hidden [-Woverloaded-virtual=]
  333 |     virtual std::string subtree4os(Node* v, int indent) const;
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:329:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool, bool) const’ was hidden [-Woverloaded-virtual=]
  329 |     virtual std::string subtree4os(Node *v, std::string indent_left,
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:327:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, int, bool, bool, bool, bool) const’ was hidden [-Woverloaded-virtual=]
  327 |     virtual std::string subtree4os(Node *v, int indent, bool useET,
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc: In function ‘void outputSingleTree(beep::Tree&, beep::TreeIOTraits&, gengetopt_args_info&)’:
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc:30:20: warning: variable ‘nw’ set but not used [-Wunused-but-set-variable]
   30 |   bool et, nt, bl, nw;
      |                    ^~
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc: In function ‘int main(int, char**)’:
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc:174:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<beep::Tree>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  174 |               if(args_info.tree_number_arg >= Tvec.size())
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/tools/showtree/showtree.cc:198:18: warning: catching polymorphic type ‘class beep::AnError’ by value [-Wcatch-value=]
  198 |   catch (AnError e)
      |                  ^
[ 87%] Linking CXX executable primeGEM
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeGEM && /usr/bin/cmake -E cmake_link_script CMakeFiles/primeGEM.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/primeGEM.dir/troyo.cc.o CMakeFiles/primeGEM.dir/cmdline.c.o -o primeGEM  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime:/usr/lib/s390x-linux-gnu/openmpi/lib:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/s390x-linux-gnu/libboost_mpi.so.1.83.0 /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libboost_serialization.so.1.83.0 ../../libraries/sfile/libprime-phylo-sfile.so 
[ 87%] Building C object src/cxx/tools/showtree/CMakeFiles/showtree.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree -I/<<PKGBUILDDIR>>/src/cxx/tools/showtree -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -MD -MT src/cxx/tools/showtree/CMakeFiles/showtree.dir/cmdline.c.o -MF CMakeFiles/showtree.dir/cmdline.c.o.d -o CMakeFiles/showtree.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree/cmdline.c
[ 88%] Linking CXX executable showtree
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/showtree && /usr/bin/cmake -E cmake_link_script CMakeFiles/showtree.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/showtree.dir/showtree.cc.o CMakeFiles/showtree.dir/cmdline.c.o -o showtree  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime:/usr/lib/s390x-linux-gnu/openmpi/lib:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/s390x-linux-gnu/libboost_mpi.so.1.83.0 /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libboost_serialization.so.1.83.0 ../../libraries/sfile/libprime-phylo-sfile.so 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 88%] Built target primeGEM
make  -f src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build.make src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 89%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/reconcile /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
make  -f src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build.make src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 90%] Building CXX object src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/Rootalyzer.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile -I/<<PKGBUILDDIR>>/src/cxx/tools/reconcile -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -MD -MT src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/Rootalyzer.cc.o -MF CMakeFiles/reconcile.dir/Rootalyzer.cc.o.d -o CMakeFiles/reconcile.dir/Rootalyzer.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/reconcile/Rootalyzer.cc
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 90%] Built target showtree
make  -f src/cxx/tools/reroot/CMakeFiles/reroot.dir/build.make src/cxx/tools/reroot/CMakeFiles/reroot.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 91%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reroot && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reroot/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reroot
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/reroot /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reroot /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reroot/CMakeFiles/reroot.dir/DependInfo.cmake "--color="
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[ 91%] Building CXX object src/cxx/tools/reroot/CMakeFiles/reroot.dir/reroot.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reroot && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reroot -I/<<PKGBUILDDIR>>/src/cxx/tools/reroot -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -MD -MT src/cxx/tools/reroot/CMakeFiles/reroot.dir/reroot.cc.o -MF CMakeFiles/reroot.dir/reroot.cc.o.d -o CMakeFiles/reroot.dir/reroot.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc
[ 92%] Linking CXX executable primeDTLSR
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeDTLSR && /usr/bin/cmake -E cmake_link_script CMakeFiles/primeDTLSR.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/primeDTLSR.dir/idolatrous.cc.o -o primeDTLSR  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile:/usr/lib/s390x-linux-gnu/openmpi/lib: ../../libraries/prime/libprime-phylo.so ../../libraries/sfile/libprime-phylo-sfile.so -llapack -lblas -lxml2 /usr/lib/s390x-linux-gnu/libboost_mpi.so.1.83.0 /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libboost_serialization.so.1.83.0 
[ 92%] Building CXX object src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/reconcile.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile -I/<<PKGBUILDDIR>>/src/cxx/tools/reconcile -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -MD -MT src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/reconcile.cc.o -MF CMakeFiles/reconcile.dir/reconcile.cc.o.d -o CMakeFiles/reconcile.dir/reconcile.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc
[ 93%] Linking CXX executable primeDLRS
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/applications/primeDLRS && /usr/bin/cmake -E cmake_link_script CMakeFiles/primeDLRS.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/primeDLRS.dir/primeDLRS.cc.o -o primeDLRS  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile:/usr/lib/s390x-linux-gnu/openmpi/lib: ../../libraries/prime/libprime-phylo.so ../../libraries/sfile/libprime-phylo-sfile.so -llapack -lblas -lxml2 /usr/lib/s390x-linux-gnu/libboost_mpi.so.1.83.0 /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libboost_serialization.so.1.83.0 
In file included from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BeepVector.hh:13,
                 from /<<PKGBUILDDIR>>/src/cxx/libraries/prime/BranchSwapping.hh:5,
                 from /<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc:10:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc:14:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc: In function ‘int main(int, char**)’:
/<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc:76:13: warning: enumeration value ‘input_format__NULL’ not handled in switch [-Wswitch]
   76 |       switch(args_info.input_format_arg)
      |             ^
/<<PKGBUILDDIR>>/src/cxx/tools/reroot/reroot.cc:181:18: warning: catching polymorphic type ‘class beep::AnError’ by value [-Wcatch-value=]
  181 |   catch (AnError e) {
      |                  ^
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc: In function ‘int main(int, char**)’:
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc:37:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   37 |   char *ofilename = "mpr.out";
      |                     ^~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc:128:18: warning: catching polymorphic type ‘class beep::AnError’ by value [-Wcatch-value=]
  128 |   catch (AnError e) {
      |                  ^
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc: In function ‘void populateGsMap(beep::Tree, beep::StrStrMap&)’:
/<<PKGBUILDDIR>>/src/cxx/tools/reconcile/reconcile.cc:157:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  157 |     for (int i = 0; i < gtree.getNumberOfNodes(); i++) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
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[ 93%] Built target primeDTLSR
make  -f src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/build.make src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 93%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 94%] Building CXX object src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames -I/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -MD -MT src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o -MF CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o.d -o CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 94%] Built target primeDLRS
make  -f src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/build.make src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 94%] Generating cmdline.c, cmdline.h
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/chainsaw && /usr/bin/gengetopt -i /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/chainsaw/cmdline.ggo --file-name=cmdline --output-dir=/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/chainsaw
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/cxx/tools/chainsaw /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/chainsaw /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 95%] Building CXX object src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/chainsaw.cc.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/chainsaw && /usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/chainsaw -I/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -MD -MT src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/chainsaw.cc.o -MF CMakeFiles/chainsaw.dir/chainsaw.cc.o.d -o CMakeFiles/chainsaw.dir/chainsaw.cc.o -c /<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc
[ 96%] Building C object src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile -I/<<PKGBUILDDIR>>/src/cxx/tools/reconcile -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -MD -MT src/cxx/tools/reconcile/CMakeFiles/reconcile.dir/cmdline.c.o -MF CMakeFiles/reconcile.dir/cmdline.c.o.d -o CMakeFiles/reconcile.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile/cmdline.c
In file included from /<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc:7:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:58:19: warning: ‘virtual beep::Tree& beep::Tree::operator=(const beep::Tree&)’ was hidden [-Woverloaded-virtual=]
   58 |     virtual Tree& operator=(const Tree& T);
      |                   ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc:9:
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:24:17: note:   by ‘beep::HybridTree& beep::HybridTree::operator=(const beep::HybridTree&)’
   24 |     HybridTree& operator=(const HybridTree& T);
      |                 ^~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:333:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, int) const’ was hidden [-Woverloaded-virtual=]
  333 |     virtual std::string subtree4os(Node* v, int indent) const;
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:329:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool, bool) const’ was hidden [-Woverloaded-virtual=]
  329 |     virtual std::string subtree4os(Node *v, std::string indent_left,
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/Tree.hh:327:25: warning: ‘virtual std::string beep::Tree::subtree4os(beep::Node*, int, bool, bool, bool, bool) const’ was hidden [-Woverloaded-virtual=]
  327 |     virtual std::string subtree4os(Node *v, int indent, bool useET,
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/libraries/prime/HybridTree.hh:108:17: note:   by ‘std::string beep::HybridTree::subtree4os(beep::Node*, std::string, std::string, bool, bool, bool) const’
  108 |     std::string subtree4os(Node *v, std::string indent_left,
      |                 ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc: In function ‘int main(int, char**)’:
/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc:51:11: warning: enumeration value ‘input_format__NULL’ not handled in switch [-Wswitch]
   51 |     switch(args_info.input_format_arg)
      |           ^
/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames/tree2leafnames.cc:95:18: warning: catching polymorphic type ‘class beep::AnError’ by value [-Wcatch-value=]
   95 |   catch (AnError e) {
      |                  ^
[ 96%] Linking CXX executable reconcile
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reconcile && /usr/bin/cmake -E cmake_link_script CMakeFiles/reconcile.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/reconcile.dir/Rootalyzer.cc.o CMakeFiles/reconcile.dir/reconcile.cc.o CMakeFiles/reconcile.dir/cmdline.c.o -o reconcile  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime:/usr/lib/s390x-linux-gnu/openmpi/lib:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/s390x-linux-gnu/libboost_mpi.so.1.83.0 /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libboost_serialization.so.1.83.0 ../../libraries/sfile/libprime-phylo-sfile.so 
[ 97%] Building C object src/cxx/tools/reroot/CMakeFiles/reroot.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reroot && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reroot -I/<<PKGBUILDDIR>>/src/cxx/tools/reroot -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -MD -MT src/cxx/tools/reroot/CMakeFiles/reroot.dir/cmdline.c.o -MF CMakeFiles/reroot.dir/cmdline.c.o.d -o CMakeFiles/reroot.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/reroot/cmdline.c
[ 98%] Building C object src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames -I/<<PKGBUILDDIR>>/src/cxx/tools/tree2leafnames -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -MD -MT src/cxx/tools/tree2leafnames/CMakeFiles/tree2leafnames.dir/cmdline.c.o -MF CMakeFiles/tree2leafnames.dir/cmdline.c.o.d -o CMakeFiles/tree2leafnames.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames/cmdline.c
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/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/reroot.dir/reroot.cc.o CMakeFiles/reroot.dir/cmdline.c.o -o reroot  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime:/usr/lib/s390x-linux-gnu/openmpi/lib:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/s390x-linux-gnu/libboost_mpi.so.1.83.0 /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libboost_serialization.so.1.83.0 ../../libraries/sfile/libprime-phylo-sfile.so 
[ 99%] Linking CXX executable tree2leafnames
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/tree2leafnames && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree2leafnames.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/tree2leafnames.dir/tree2leafnames.cc.o CMakeFiles/tree2leafnames.dir/cmdline.c.o -o tree2leafnames  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime:/usr/lib/s390x-linux-gnu/openmpi/lib:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/s390x-linux-gnu/libboost_mpi.so.1.83.0 /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libboost_serialization.so.1.83.0 ../../libraries/sfile/libprime-phylo-sfile.so 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
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[ 99%] Building C object src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/cmdline.c.o
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/chainsaw && /usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/chainsaw -I/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries -isystem /usr/lib/s390x-linux-gnu/openmpi/include -isystem /usr/lib/s390x-linux-gnu/openmpi/include/openmpi -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -fexceptions -g -MD -MT src/cxx/tools/chainsaw/CMakeFiles/chainsaw.dir/cmdline.c.o -MF CMakeFiles/chainsaw.dir/cmdline.c.o.d -o CMakeFiles/chainsaw.dir/cmdline.c.o -c /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/tools/chainsaw/cmdline.c
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[ 99%] Built target tree2leafnames
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc: In function ‘beep::Tree ReadGuestTree(gengetopt_args_info&, std::vector<beep::SetOfNodes>*, beep::StrStrMap*)’:
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc:90:9: warning: enumeration value ‘guest_tree_format__NULL’ not handled in switch [-Wswitch]
   90 |   switch(ai.guest_tree_format_arg)
      |         ^
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc: In function ‘beep::Tree ReadHostTree(gengetopt_args_info&)’:
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc:114:9: warning: enumeration value ‘host_tree_format__NULL’ not handled in switch [-Wswitch]
  114 |   switch(ai.host_tree_format_arg)
      |         ^
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc: In function ‘int main(int, char**)’:
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc:163:24: warning: catching polymorphic type ‘class beep::AnError’ by value [-Wcatch-value=]
  163 |         catch (AnError e) {
      |                        ^
/<<PKGBUILDDIR>>/src/cxx/tools/chainsaw/chainsaw.cc:188:18: warning: catching polymorphic type ‘class beep::AnError’ by value [-Wcatch-value=]
  188 |   catch (AnError e) {
      |                  ^
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
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[100%] Linking CXX executable chainsaw
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/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/prime-phylo-1.0.11-10ubuntu1 -fpermissive -Wdate-time -D_FORTIFY_SOURCE=3 -Wreorder -Wall -fexceptions -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/chainsaw.dir/chainsaw.cc.o CMakeFiles/chainsaw.dir/cmdline.c.o -o chainsaw  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/prime:/usr/lib/s390x-linux-gnu/openmpi/lib:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/src/cxx/libraries/sfile: ../../libraries/prime/libprime-phylo.so -llapack -lblas -lxml2 /usr/lib/s390x-linux-gnu/libboost_mpi.so.1.83.0 /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libboost_serialization.so.1.83.0 ../../libraries/sfile/libprime-phylo-sfile.so 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[100%] Built target chainsaw
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
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   dh_auto_test -a -O--buildsystem=cmake
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	cd obj-s390x-linux-gnu && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/prime-phylo AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
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Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Debug"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/chainsaw.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/mcmc_analysis.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/primeDLRS.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/primeDTLSR.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/primeGEM.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/reconcile.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/reroot.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/showtree.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/tree2leafnames.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/share/man/man1/treesize.1
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo.so
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo.so" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo-sfile.so
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo-sfile.so" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeGEM
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeGEM" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDTLSR
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDTLSR" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDLRS
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/primeDLRS" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/treesize
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/treesize" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/showtree
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/showtree" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reconcile
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reconcile" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reroot
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/reroot" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/tree2leafnames
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/tree2leafnames" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/chainsaw
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/chainsaw" to "/usr/lib/prime-phylo"
-- Installing: /<<PKGBUILDDIR>>/debian/prime-phylo/usr/bin/mcmc_analysis
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
   dh_installdocs -a -O--buildsystem=cmake
   dh_installchangelogs -a -O--buildsystem=cmake
   dh_installexamples -a -O--buildsystem=cmake
   dh_installman -a -O--buildsystem=cmake
   dh_installsystemduser -a -O--buildsystem=cmake
   dh_perl -a -O--buildsystem=cmake
   dh_link -a -O--buildsystem=cmake
   dh_strip_nondeterminism -a -O--buildsystem=cmake
   dh_compress -a -O--buildsystem=cmake
   dh_fixperms -a -O--buildsystem=cmake
   dh_missing -a -O--buildsystem=cmake
   dh_dwz -a -O--buildsystem=cmake
   dh_strip -a -O--buildsystem=cmake
debugedit: debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo-sfile.so: Unknown DWARF DW_FORM_0x1f20
75e36b56d199fcc08321b7ae93895e4504023113
debugedit: debian/prime-phylo/usr/lib/prime-phylo/libprime-phylo.so: Unknown DWARF DW_FORM_0x1f20
bf0c4f1167ecaaf05fee0e5b096b79aea3488af2
debugedit: debian/prime-phylo/usr/bin/showtree: Unknown DWARF DW_FORM_0x1f20
5e6766bd9c6f67bd615a2402b95f580cdeb2b86d
debugedit: debian/prime-phylo/usr/bin/reconcile: Unknown DWARF DW_FORM_0x1f21
02604be5f67fe3498bc3cfd5192fd3c76589f725
debugedit: debian/prime-phylo/usr/bin/primeGEM: Unknown DWARF DW_FORM_0x1f20
03dfc53f84fa1a19563d2771d106b25a8c0a6e55
debugedit: debian/prime-phylo/usr/bin/primeDLRS: Unknown DWARF DW_FORM_0x1f20
a8e4dfa25ada7d11de8240aba51f090ceb570a37
debugedit: debian/prime-phylo/usr/bin/reroot: Unknown DWARF DW_FORM_0x1f21
e8d36d86896d04b4a0eed0a35d82fadc1f86a51d
debugedit: debian/prime-phylo/usr/bin/primeDTLSR: Unknown DWARF DW_FORM_0x1f20
5778d906d86656c46c78ae152c87ce651903ce04
debugedit: debian/prime-phylo/usr/bin/treesize: Unknown DWARF DW_FORM_0x1f20
4179d5fa6bf5fa3a91e941dbfed3e68906d5dd51
debugedit: debian/prime-phylo/usr/bin/tree2leafnames: Unknown DWARF DW_FORM_0x1f20
12d1dbeed24eac9e4ca67940b31e8a57a1505e26
debugedit: debian/prime-phylo/usr/bin/chainsaw: Unknown DWARF DW_FORM_0x1f20
8102b9957c5638241ed430ec4e2ff40b7cc36e8b
   debian/rules override_dh_makeshlibs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_makeshlibs -pprime-phylo -Xprime-phylo.so -Xprime-phylo-sfile.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_shlibdeps -a -O--buildsystem=cmake
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libprime-phylo-sfile.so'
   dh_installdeb -a -O--buildsystem=cmake
   dh_gencontrol -a -O--buildsystem=cmake
   dh_md5sums -a -O--buildsystem=cmake
   dh_builddeb -a -O--buildsystem=cmake
INFO: pkgstriptranslations version 154
INFO: Disabling pkgstriptranslations for PPA build
INFO: Disabling pkgmaintainermangler for PPA build
INFO: Disabling pkgstripfiles for PPA build
dpkg-deb: building package 'prime-phylo' in '../prime-phylo_1.0.11-10ubuntu1_s390x.deb'.
 dpkg-genbuildinfo --build=any -O../prime-phylo_1.0.11-10ubuntu1_s390x.buildinfo
 dpkg-genchanges --build=any -mLaunchpad Build Daemon <buildd@bos02-s390x-019.buildd> -O../prime-phylo_1.0.11-10ubuntu1_s390x.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-04-11T22:19:27Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


prime-phylo_1.0.11-10ubuntu1_s390x.changes:
-------------------------------------------

Format: 1.8
Date: Thu, 11 Apr 2024 16:13:48 -0600
Source: prime-phylo
Binary: prime-phylo
Built-For-Profiles: noudeb
Architecture: s390x
Version: 1.0.11-10ubuntu1
Distribution: noble
Urgency: medium
Maintainer: Launchpad Build Daemon <buildd@bos02-s390x-019.buildd>
Changed-By: Zixing Liu <zixing.liu@canonical.com>
Description:
 prime-phylo - bayesian estimation of gene trees taking the species tree into ac
Launchpad-Bugs-Fixed: 2061032
Changes:
 prime-phylo (1.0.11-10ubuntu1) noble; urgency=medium
 .
   * debian/patches/fix-ftbfs-with-gcc13.patch: Fix missing headers and
     missing prototypes.  Closes LP: #2061032.
Checksums-Sha1:
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Checksums-Sha256:
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Files:
 6025efe2a1e246897aa8a4208f976bbe 9438 science optional prime-phylo_1.0.11-10ubuntu1_s390x.buildinfo
 720001eeca083d69707d08a2c542c9da 837230 science optional prime-phylo_1.0.11-10ubuntu1_s390x.deb
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
/<<BUILDDIR>>/prime-phylo_1.0.11-10ubuntu1_s390x.changes.new could not be renamed to /<<BUILDDIR>>/prime-phylo_1.0.11-10ubuntu1_s390x.changes: Illegal seek
Distribution field may be wrong!!!
+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: prime-phylo
Binary: prime-phylo
Architecture: s390x
Version: 1.0.11-10ubuntu1
Checksums-Md5:
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Checksums-Sha1:
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Checksums-Sha256:
 ec0ac5cc24d78a4158c0d460f99847304bdfff879c9d0e18fa3e8d808d1efbeb 837230 prime-phylo_1.0.11-10ubuntu1_s390x.deb
Build-Origin: Ubuntu
Build-Architecture: s390x
Build-Date: Thu, 11 Apr 2024 22:19:27 +0000
Build-Path: /<<PKGBUILDDIR>>
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 merged-usr-via-aliased-dirs
 usr-local-has-programs
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Environment:
 DEB_BUILD_OPTIONS="noautodbgsym parallel=4"
 DEB_BUILD_PROFILES="noudeb"
 LANG="C.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1712873628"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


prime-phylo_1.0.11-10ubuntu1_s390x.deb
--------------------------------------

 new Debian package, version 2.0.
 size 837230 bytes: control archive=1757 bytes.
    1180 bytes,    20 lines      control
    2025 bytes,    31 lines      md5sums
 Package: prime-phylo
 Version: 1.0.11-10ubuntu1
 Architecture: s390x
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Installed-Size: 2778
 Depends: perl:any, libblas3 | libblas.so.3, libboost-mpi1.83.0 (>= 1.83.0), libboost-serialization1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libopenmpi3t64 (>= 4.1.6), libstdc++6 (>= 13.1), libxml2 (>= 2.7.4)
 Suggests: njplot, treeviewx, muscle, probalign, mafft, python3-biopython, mrbayes, phyml, raxml
 Section: science
 Priority: optional
 Homepage: http://prime.sbc.su.se
 Description: bayesian estimation of gene trees taking the species tree into account
  PrIME (Probabilistic Integrated Models of Evolution) is a package
  supporting inference of evolutionary parameters in a Bayesian framework
  using Markov chain Monte Carlo simulation. A distinguishing feature of
  PrIME is that the species tree is taken into account when analyzing gene
  trees.
  .
  The input data to PrIME is a multiple sequence alignment in FASTA format
  and the output data contains trees in Newick format.
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

drwxr-xr-x root/root         0 2024-04-11 22:13 ./
drwxr-xr-x root/root         0 2024-04-11 22:13 ./usr/
drwxr-xr-x root/root         0 2024-04-11 22:13 ./usr/bin/
-rwxr-xr-x root/root     39472 2024-04-11 22:13 ./usr/bin/chainsaw
-rwxr-xr-x root/root     33128 2012-12-17 15:52 ./usr/bin/mcmc_analysis
-rwxr-xr-x root/root    104728 2024-04-11 22:13 ./usr/bin/primeDLRS
-rwxr-xr-x root/root    104728 2024-04-11 22:13 ./usr/bin/primeDTLSR
-rwxr-xr-x root/root     48208 2024-04-11 22:13 ./usr/bin/primeGEM
lrwxrwxrwx root/root         0 2024-04-11 22:13 ./usr/bin/primeGSRf -> primeDLRS
-rwxr-xr-x root/root     47560 2024-04-11 22:13 ./usr/bin/reconcile
-rwxr-xr-x root/root     51952 2024-04-11 22:13 ./usr/bin/reroot
-rwxr-xr-x root/root     35648 2024-04-11 22:13 ./usr/bin/showtree
-rwxr-xr-x root/root     27024 2024-04-11 22:13 ./usr/bin/tree2leafnames
-rwxr-xr-x root/root     27064 2024-04-11 22:13 ./usr/bin/treesize
drwxr-xr-x root/root         0 2024-04-11 22:13 ./usr/lib/
drwxr-xr-x root/root         0 2024-04-11 22:13 ./usr/lib/prime-phylo/
-rw-r--r-- root/root     51216 2024-04-11 22:13 ./usr/lib/prime-phylo/libprime-phylo-sfile.so
-rw-r--r-- root/root   2218264 2024-04-11 22:13 ./usr/lib/prime-phylo/libprime-phylo.so
drwxr-xr-x root/root         0 2024-04-11 22:13 ./usr/share/
drwxr-xr-x root/root         0 2024-04-11 22:13 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-04-11 22:13 ./usr/share/doc/prime-phylo/
-rw-r--r-- root/root       381 2012-12-17 15:52 ./usr/share/doc/prime-phylo/README
-rw-r--r-- root/root       532 2024-04-11 22:09 ./usr/share/doc/prime-phylo/README.test
-rw-r--r-- root/root       869 2024-04-11 22:13 ./usr/share/doc/prime-phylo/changelog.Debian.gz
-rw-r--r-- root/root      7287 2024-04-11 22:09 ./usr/share/doc/prime-phylo/copyright
drwxr-xr-x root/root         0 2024-04-11 22:13 ./usr/share/doc/prime-phylo/examples/
-rw-r--r-- root/root       393 2024-04-11 22:09 ./usr/share/doc/prime-phylo/examples/gse
-rw-r--r-- root/root       162 2024-04-11 22:09 ./usr/share/doc/prime-phylo/examples/hostfile
-rw-r--r-- root/root      3513 2024-04-11 22:09 ./usr/share/doc/prime-phylo/examples/seqfile
-rw-r--r-- root/root        14 2024-04-11 22:09 ./usr/share/doc/prime-phylo/examples/treefile
-rw-r--r-- root/root       974 2024-04-11 22:09 ./usr/share/doc/prime-phylo/run-unit-test
drwxr-xr-x root/root         0 2024-04-11 22:13 ./usr/share/man/
drwxr-xr-x root/root         0 2024-04-11 22:13 ./usr/share/man/man1/
-rw-r--r-- root/root       653 2024-04-11 22:13 ./usr/share/man/man1/chainsaw.1.gz
-rw-r--r-- root/root      1284 2024-04-11 22:13 ./usr/share/man/man1/mcmc_analysis.1.gz
-rw-r--r-- root/root      2154 2024-04-11 22:13 ./usr/share/man/man1/primeDLRS.1.gz
-rw-r--r-- root/root      1992 2024-04-11 22:13 ./usr/share/man/man1/primeDTLSR.1.gz
-rw-r--r-- root/root       987 2024-04-11 22:13 ./usr/share/man/man1/primeGEM.1.gz
lrwxrwxrwx root/root         0 2024-04-11 22:13 ./usr/share/man/man1/primeGSRf.1.gz -> primeDLRS.1.gz
-rw-r--r-- root/root       654 2024-04-11 22:13 ./usr/share/man/man1/reconcile.1.gz
-rw-r--r-- root/root       886 2024-04-11 22:13 ./usr/share/man/man1/reroot.1.gz
-rw-r--r-- root/root       904 2024-04-11 22:13 ./usr/share/man/man1/showtree.1.gz
-rw-r--r-- root/root       494 2024-04-11 22:13 ./usr/share/man/man1/tree2leafnames.1.gz
-rw-r--r-- root/root       608 2024-04-11 22:13 ./usr/share/man/man1/treesize.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not removing build depends: as requested

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: s390x
Build Type: any
Build-Space: 205924
Build-Time: 151
Distribution: noble
Host Architecture: s390x
Install-Time: 16
Job: prime-phylo_1.0.11-10ubuntu1.dsc
Machine Architecture: s390x
Package: prime-phylo
Package-Time: 168
Source-Version: 1.0.11-10ubuntu1
Space: 205924
Status: successful
Version: 1.0.11-10ubuntu1
--------------------------------------------------------------------------------
Finished at 2024-04-11T22:19:27Z
Build needed 00:02:48, 205924k disk space
RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-28050322
Scanning for processes to kill in build PACKAGEBUILD-28050322