RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-044 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_151 python-lpbuildd_151 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.2 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 14 Sep 12:03:57 ntpdate[1789]: adjust time server 10.211.37.1 offset 0.013031 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=xenial --arch=amd64 PACKAGEBUILD-13374425 /home/buildd/filecache-default/e4c0063eff90e17a3bbe5bc75217617f6b0962e3 Creating target for build PACKAGEBUILD-13374425 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=xenial --arch=amd64 PACKAGEBUILD-13374425 Starting target for build PACKAGEBUILD-13374425 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=xenial --arch=amd64 PACKAGEBUILD-13374425 'deb http://ppa.launchpad.net/gt1/libmaus2/ubuntu xenial main' 'deb http://ppa.launchpad.net/gt1/staden-io-lib-trunk-tischler/ubuntu xenial main' 'deb http://ftpmaster.internal/ubuntu xenial main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu xenial-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu xenial-updates main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-13374425 RUN: /usr/share/launchpad-buildd/slavebin/in-target add-trusted-keys --backend=chroot --series=xenial --arch=amd64 PACKAGEBUILD-13374425 Adding trusted keys to build-PACKAGEBUILD-13374425 OK /etc/apt/trusted.gpg -------------------- pub 1024D/437D05B5 2004-09-12 uid Ubuntu Archive Automatic Signing Key sub 2048g/79164387 2004-09-12 pub 1024D/FBB75451 2004-12-30 uid Ubuntu CD Image Automatic Signing Key pub 4096R/C0B21F32 2012-05-11 uid Ubuntu Archive Automatic Signing Key (2012) pub 4096R/EFE21092 2012-05-11 uid Ubuntu CD Image Automatic Signing Key (2012) pub 1024R/65778D86 2013-02-26 uid Launchpad PPA for German Tischler RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=xenial --arch=amd64 PACKAGEBUILD-13374425 Updating target for build PACKAGEBUILD-13374425 Hit:1 http://ftpmaster.internal/ubuntu xenial InRelease Get:2 http://ppa.launchpad.net/gt1/libmaus2/ubuntu xenial InRelease [17.5 kB] Get:3 http://ppa.launchpad.net/gt1/staden-io-lib-trunk-tischler/ubuntu xenial InRelease [17.6 kB] Get:4 http://ftpmaster.internal/ubuntu xenial-security InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu xenial-updates InRelease [102 kB] Get:6 http://ppa.launchpad.net/gt1/libmaus2/ubuntu xenial/main amd64 Packages [860 B] Get:7 http://ppa.launchpad.net/gt1/libmaus2/ubuntu xenial/main Translation-en [572 B] Get:8 http://ppa.launchpad.net/gt1/staden-io-lib-trunk-tischler/ubuntu xenial/main amd64 Packages [852 B] Get:9 http://ppa.launchpad.net/gt1/staden-io-lib-trunk-tischler/ubuntu xenial/main Translation-en [272 B] Get:10 http://ftpmaster.internal/ubuntu xenial-security/main amd64 Packages [356 kB] Get:11 http://ftpmaster.internal/ubuntu xenial-security/main Translation-en [156 kB] Get:12 http://ftpmaster.internal/ubuntu xenial-security/restricted amd64 Packages [7420 B] Get:13 http://ftpmaster.internal/ubuntu xenial-security/restricted Translation-en [2428 B] Get:14 http://ftpmaster.internal/ubuntu xenial-security/universe amd64 Packages [168 kB] Get:15 http://ftpmaster.internal/ubuntu xenial-security/universe Translation-en [88.3 kB] Get:16 http://ftpmaster.internal/ubuntu xenial-security/multiverse amd64 Packages [2748 B] Get:17 http://ftpmaster.internal/ubuntu xenial-security/multiverse Translation-en [1232 B] Get:18 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 Packages [637 kB] Get:19 http://ftpmaster.internal/ubuntu xenial-updates/main Translation-en [263 kB] Get:20 http://ftpmaster.internal/ubuntu xenial-updates/restricted amd64 Packages [8048 B] Get:21 http://ftpmaster.internal/ubuntu xenial-updates/restricted Translation-en [2688 B] Get:22 http://ftpmaster.internal/ubuntu xenial-updates/universe amd64 Packages [540 kB] Get:23 http://ftpmaster.internal/ubuntu xenial-updates/universe Translation-en [214 kB] Get:24 http://ftpmaster.internal/ubuntu xenial-updates/multiverse amd64 Packages [15.5 kB] Get:25 http://ftpmaster.internal/ubuntu xenial-updates/multiverse Translation-en [7540 B] Fetched 2712 kB in 0s (2725 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt apt-transport-https base-files bash binutils bsdutils coreutils cpp-5 dpkg dpkg-dev g++-5 gcc-5 gcc-5-base gnupg gpgv grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcilkrts5 libcurl3-gnutls libdbus-1-3 libdpkg-perl libfdisk1 libgcc-5-dev libgcrypt20 libgnutls30 libgomp1 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libitm1 libk5crypto3 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 liblsan0 libmount1 libmpx0 libnettle6 libp11-kit0 libprocps4 libquadmath0 libroken18-heimdal librtmp1 libsmartcols1 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base mount multiarch-support openssl passwd procps systemd systemd-sysv tar tzdata util-linux zlib1g 87 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 57.7 MB of archives. After this operation, 96.3 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 base-files amd64 9.4ubuntu4.5 [68.4 kB] Get:2 http://ftpmaster.internal/ubuntu xenial-security/main amd64 bash amd64 4.3-14ubuntu1.2 [583 kB] Get:3 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 bsdutils amd64 1:2.27.1-6ubuntu3.3 [52.0 kB] Get:4 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 coreutils amd64 8.25-2ubuntu3~16.04 [1174 kB] Get:5 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 dpkg amd64 1.18.4ubuntu1.2 [2085 kB] Get:6 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 grep amd64 2.25-1~16.04.1 [153 kB] Get:7 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 init-system-helpers all 1.29ubuntu4 [32.3 kB] Get:8 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 init amd64 1.29ubuntu4 [4624 B] Get:9 http://ftpmaster.internal/ubuntu xenial-security/main amd64 login amd64 1:4.2-3.1ubuntu5.3 [304 kB] Get:10 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libsystemd0 amd64 229-4ubuntu19 [205 kB] Get:11 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 systemd amd64 229-4ubuntu19 [3811 kB] Get:12 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libc6-dev amd64 2.23-0ubuntu9 [2082 kB] Get:13 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libc-dev-bin amd64 2.23-0ubuntu9 [68.6 kB] Get:14 http://ftpmaster.internal/ubuntu xenial-security/main amd64 linux-libc-dev amd64 4.4.0-93.116 [836 kB] Get:15 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libc6 amd64 2.23-0ubuntu9 [2586 kB] Get:16 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libapparmor1 amd64 2.10.95-0ubuntu2.7 [31.2 kB] Get:17 http://ftpmaster.internal/ubuntu xenial-security/main amd64 passwd amd64 1:4.2-3.1ubuntu5.3 [779 kB] Get:18 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libuuid1 amd64 2.27.1-6ubuntu3.3 [15.7 kB] Get:19 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libblkid1 amd64 2.27.1-6ubuntu3.3 [107 kB] Get:20 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libkmod2 amd64 22-1ubuntu5 [39.9 kB] Get:21 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libmount1 amd64 2.27.1-6ubuntu3.3 [114 kB] Get:22 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 lsb-base all 9.20160110ubuntu0.2 [13.7 kB] Get:23 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 util-linux amd64 2.27.1-6ubuntu3.3 [849 kB] Get:24 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 mount amd64 2.27.1-6ubuntu3.3 [121 kB] Get:25 http://ftpmaster.internal/ubuntu xenial-security/main amd64 tar amd64 1.28-2.1ubuntu0.1 [209 kB] Get:26 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libc-bin amd64 2.23-0ubuntu9 [627 kB] Get:27 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.4 [95.3 kB] Get:28 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.4 [244 kB] Get:29 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.4 [55.0 kB] Get:30 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.4 [27.4 kB] Get:31 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.4 [8912 B] Get:32 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.4 [264 kB] Get:33 http://ftpmaster.internal/ubuntu xenial-security/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.4 [105 kB] Get:34 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.4 [40.1 kB] Get:35 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.4 [9766 B] Get:36 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.4 [131 kB] Get:37 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-2ubuntu4.1 [51.2 kB] Get:38 http://ftpmaster.internal/ubuntu xenial-security/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.4 [8300 kB] Get:39 http://ftpmaster.internal/ubuntu xenial-security/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.4 [8577 kB] Get:40 http://ftpmaster.internal/ubuntu xenial-security/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.4 [7653 kB] Get:41 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.4 [38.8 kB] Get:42 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.4 [2311 kB] Get:43 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.4 [1426 kB] Get:44 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.4 [2237 kB] Get:45 http://ftpmaster.internal/ubuntu xenial-security/main amd64 gcc-5-base amd64 5.4.0-6ubuntu1~16.04.4 [16.8 kB] Get:46 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libstdc++6 amd64 5.4.0-6ubuntu1~16.04.4 [393 kB] Get:47 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libapt-pkg5.0 amd64 1.2.24 [707 kB] Get:48 http://ftpmaster.internal/ubuntu xenial-security/main amd64 gpgv amd64 1.4.20-1ubuntu3.1 [165 kB] Get:49 http://ftpmaster.internal/ubuntu xenial-security/main amd64 gnupg amd64 1.4.20-1ubuntu3.1 [626 kB] Get:50 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 apt amd64 1.2.24 [1043 kB] Get:51 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 systemd-sysv amd64 229-4ubuntu19 [12.4 kB] Get:52 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libfdisk1 amd64 2.27.1-6ubuntu3.3 [138 kB] Get:53 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libgcrypt20 amd64 1.6.5-2ubuntu0.3 [338 kB] Get:54 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libsmartcols1 amd64 2.27.1-6ubuntu3.3 [63.4 kB] Get:55 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libudev1 amd64 229-4ubuntu19 [55.0 kB] Get:56 http://ftpmaster.internal/ubuntu xenial-security/main amd64 multiarch-support amd64 2.23-0ubuntu9 [6826 B] Get:57 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libprocps4 amd64 2:3.3.10-4ubuntu2.3 [32.8 kB] Get:58 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 procps amd64 2:3.3.10-4ubuntu2.3 [222 kB] Get:59 http://ftpmaster.internal/ubuntu xenial-security/main amd64 tzdata all 2016j-0ubuntu0.16.04 [168 kB] Get:60 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB] Get:61 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB] Get:62 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libidn11 amd64 1.32-3ubuntu1.1 [45.6 kB] Get:63 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB] Get:64 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.2 [43.3 kB] Get:65 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.3 [548 kB] Get:66 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.8 [1081 kB] Get:67 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2 [120 kB] Get:68 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2 [273 kB] Get:69 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2 [30.8 kB] Get:70 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2 [81.2 kB] Get:71 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB] Get:72 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB] Get:73 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB] Get:74 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB] Get:75 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB] Get:76 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB] Get:77 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB] Get:78 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB] Get:79 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB] Get:80 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.2 [160 kB] Get:81 http://ftpmaster.internal/ubuntu xenial-security/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB] Get:82 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libcurl3-gnutls amd64 7.47.0-1ubuntu2.2 [184 kB] Get:83 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 apt-transport-https amd64 1.2.24 [26.1 kB] Get:84 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libdbus-1-3 amd64 1.10.6-1ubuntu3.3 [161 kB] Get:85 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.8 [492 kB] Get:86 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.2 [584 kB] Get:87 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.2 [195 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.7 MB in 2s (24.2 MB/s) (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12184 files and directories currently installed.) Preparing to unpack .../systemd-sysv_229-4ubuntu19_amd64.deb ... Unpacking systemd-sysv (229-4ubuntu19) over (229-4ubuntu4) ... Setting up systemd-sysv (229-4ubuntu19) ... (Reading database ... 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Processing triggers for systemd (229-4ubuntu19) ... Setting up libc-dev-bin (2.23-0ubuntu9) ... Setting up linux-libc-dev:amd64 (4.4.0-93.116) ... Setting up libc6-dev:amd64 (2.23-0ubuntu9) ... Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up cpp-5 (5.4.0-6ubuntu1~16.04.4) ... Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up binutils (2.26.1-1ubuntu1~16.04.4) ... Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up gcc-5 (5.4.0-6ubuntu1~16.04.4) ... Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up g++-5 (5.4.0-6ubuntu1~16.04.4) ... Setting up libprocps4:amd64 (2:3.3.10-4ubuntu2.3) ... Setting up procps (2:3.3.10-4ubuntu2.3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Setting up tzdata (2016j-0ubuntu0.16.04) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Sep 14 12:04:25 UTC 2017. Universal Time is now: Thu Sep 14 12:04:25 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... Setting up libidn11:amd64 (1.32-3ubuntu1.1) ... Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.2) ... Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.3) ... Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.8) ... Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2) ... Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2) ... Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2) ... Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2) ... Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... Setting up libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.2) ... Setting up apt-transport-https (1.2.24) ... Setting up libdbus-1-3:amd64 (1.10.6-1ubuntu3.3) ... Setting up openssl (1.0.2g-1ubuntu4.8) ... Setting up libdpkg-perl (1.18.4ubuntu1.2) ... Setting up dpkg-dev (1.18.4ubuntu1.2) ... Processing triggers for libc-bin (2.23-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13374425 amd64 xenial -c chroot:build-PACKAGEBUILD-13374425 --arch=amd64 --dist=xenial --nolog -A 'libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1.dsc' Initiating build PACKAGEBUILD-13374425 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-044.buildd +==============================================================================+ | libmaus2 2.0.381-1+706+201709141202~ubuntu16.04.1 (amd64) 14 Sep 2017 12:04 | +==============================================================================+ Package: libmaus2 Version: 2.0.381-1+706+201709141202~ubuntu16.04.1 Source Version: 2.0.381-1+706+201709141202~ubuntu16.04.1 Distribution: xenial Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/libmaus2-HSQrOA/libmaus2-2.0.381' with '<>' I: NOTICE: Log filtering will replace 'build/libmaus2-HSQrOA' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13374425/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-BtnvxF/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-BtnvxF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BtnvxF/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-BtnvxF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BtnvxF/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-BtnvxF/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (251 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-BtnvxF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12196 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), dh-autoreconf, dh-exec, autoconf (>= 2.61), automake (>= 1.10), libtool (>= 2.2.6), pkg-config (>= 0.22), zlib1g-dev (>= 1.2.3), libsnappy-dev (>= 1.0.3), seqan-dev (>= 1.2), staden-io-lib-trunk-dev (>= 1.13.0), libgnutls-dev (>= 2.12.14), yasm (>= 1.1.0), nettle-dev (>= 2.4), liblzma-dev (>= 5.1.0) Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, dh-exec, autoconf (>= 2.61), automake (>= 1.10), libtool (>= 2.2.6), pkg-config (>= 0.22), zlib1g-dev (>= 1.2.3), libsnappy-dev (>= 1.0.3), seqan-dev (>= 1.2), staden-io-lib-trunk-dev (>= 1.13.0), libgnutls-dev (>= 2.12.14), yasm (>= 1.1.0), nettle-dev (>= 2.4), liblzma-dev (>= 5.1.0) dpkg-deb: building package 'sbuild-build-depends-libmaus2-dummy' in '/<>/resolver-nYa9Zi/apt_archive/sbuild-build-depends-libmaus2-dummy.deb'. Ign:1 copy:/<>/resolver-nYa9Zi/apt_archive ./ InRelease Get:2 copy:/<>/resolver-nYa9Zi/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-nYa9Zi/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-nYa9Zi/apt_archive ./ Sources [347 B] Get:5 copy:/<>/resolver-nYa9Zi/apt_archive ./ Packages [664 B] Fetched 3130 B in 0s (140 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libmaus2 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libcurl3 libcurl4-openssl-dev libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dev libgnutls-openssl27 libgnutlsxx28 libicu55 libidn11-dev liblzma-dev libmagic1 libp11-kit-dev libpipeline1 libsigsegv2 libsnappy-dev libsnappy1v5 libtasn1-6-dev libtimedate-perl libtool libunistring0 libxml2 m4 man-db nettle-dev pkg-config po-debconf seqan-dev staden-io-lib-trunk staden-io-lib-trunk-dev yasm zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libcurl4-doc libcurl3-dbg libkrb5-dev libldap2-dev librtmp-dev libssl-dev gmp-doc libgmp10-doc libmpfr-dev gnutls-doc gnutls-bin guile-gnutls liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libtasn1-doc libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libcurl3 libcurl4-openssl-dev libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dev libgnutls-openssl27 libgnutlsxx28 libicu55 libidn11-dev liblzma-dev libmagic1 libp11-kit-dev libpipeline1 libsigsegv2 libsnappy-dev libsnappy1v5 libtasn1-6-dev libtimedate-perl libtool libunistring0 libxml2 m4 man-db nettle-dev pkg-config po-debconf sbuild-build-depends-libmaus2-dummy seqan-dev staden-io-lib-trunk staden-io-lib-trunk-dev yasm zlib1g-dev 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After this operation, 100 MB of additional disk space will be used. Get:1 copy:/<>/resolver-nYa9Zi/apt_archive ./ sbuild-build-depends-libmaus2-dummy 0.invalid.0 [912 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB] Get:3 http://ppa.launchpad.net/gt1/staden-io-lib-trunk-tischler/ubuntu xenial/main amd64 staden-io-lib-trunk amd64 1.13.10+583~ubuntu16.04.1 [212 kB] Get:4 http://ppa.launchpad.net/gt1/staden-io-lib-trunk-tischler/ubuntu xenial/main amd64 staden-io-lib-trunk-dev amd64 1.13.10+583~ubuntu16.04.1 [289 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:10 http://ftpmaster.internal/ubuntu xenial/main amd64 libmagic1 amd64 1:5.25-2ubuntu1 [216 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main amd64 file amd64 1:5.25-2ubuntu1 [21.2 kB] Get:12 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libgnutls-openssl27 amd64 3.4.10-4ubuntu1.3 [22.0 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3 [6412 B] Get:14 http://ftpmaster.internal/ubuntu xenial/main amd64 gettext-base amd64 0.19.7-2ubuntu3 [47.9 kB] Get:15 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu1 [1119 kB] Get:16 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libicu55 amd64 55.1-7ubuntu0.2 [7659 kB] Get:17 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.2 [697 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main amd64 autopoint all 0.19.7-2ubuntu3 [406 kB] Get:23 http://ftpmaster.internal/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/main amd64 gettext amd64 0.19.7-2ubuntu3 [1076 kB] Get:25 http://ftpmaster.internal/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:26 http://ftpmaster.internal/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB] Get:27 http://ftpmaster.internal/ubuntu xenial/main amd64 libarchive-zip-perl all 1.56-2 [84.1 kB] Get:28 http://ftpmaster.internal/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] Get:29 http://ftpmaster.internal/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:30 http://ftpmaster.internal/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B] Get:31 http://ftpmaster.internal/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB] Get:32 http://ftpmaster.internal/ubuntu xenial/main amd64 libtool all 2.4.6-0.1 [193 kB] Get:33 http://ftpmaster.internal/ubuntu xenial/main amd64 dh-autoreconf all 11 [15.8 kB] Get:34 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libcurl3 amd64 7.47.0-1ubuntu2.2 [186 kB] Get:35 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libcurl4-openssl-dev amd64 7.47.0-1ubuntu2.2 [262 kB] Get:36 http://ftpmaster.internal/ubuntu xenial/main amd64 libgmpxx4ldbl amd64 2:6.1.0+dfsg-2 [8948 B] Get:37 http://ftpmaster.internal/ubuntu xenial/main amd64 libgmp-dev amd64 2:6.1.0+dfsg-2 [314 kB] Get:38 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libgnutlsxx28 amd64 3.4.10-4ubuntu1.3 [13.7 kB] Get:39 http://ftpmaster.internal/ubuntu xenial-security/main amd64 nettle-dev amd64 3.2-1ubuntu0.16.04.1 [939 kB] Get:40 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4.1 [168 kB] Get:41 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libtasn1-6-dev amd64 4.7-3ubuntu0.16.04.2 [85.8 kB] Get:42 http://ftpmaster.internal/ubuntu xenial-updates/main amd64 libp11-kit-dev amd64 0.23.2-5~ubuntu16.04.1 [56.5 kB] Get:43 http://ftpmaster.internal/ubuntu xenial/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] Get:44 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libidn11-dev amd64 1.32-3ubuntu1.1 [519 kB] Get:45 http://ftpmaster.internal/ubuntu xenial-security/main amd64 libgnutls-dev amd64 3.4.10-4ubuntu1.3 [552 kB] Get:46 http://ftpmaster.internal/ubuntu xenial/universe amd64 yasm amd64 1.3.0-2 [351 kB] Get:47 http://ftpmaster.internal/ubuntu xenial/main amd64 dh-exec amd64 0.23 [24.5 kB] Get:48 http://ftpmaster.internal/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] Get:49 http://ftpmaster.internal/ubuntu xenial/main amd64 libsnappy1v5 amd64 1.1.3-2 [16.0 kB] Get:50 http://ftpmaster.internal/ubuntu xenial/main amd64 libsnappy-dev amd64 1.1.3-2 [24.0 kB] Get:51 http://ftpmaster.internal/ubuntu xenial/universe amd64 seqan-dev all 1.4.1+dfsg-2 [2238 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.7 MB in 0s (42.4 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12196 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-7_amd64.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_amd64.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.1-2_amd64.deb ... 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Preparing to unpack .../seqan-dev_1.4.1+dfsg-2_all.deb ... Unpacking seqan-dev (1.4.1+dfsg-2) ... Selecting previously unselected package sbuild-build-depends-libmaus2-dummy. Preparing to unpack .../sbuild-build-depends-libmaus2-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-libmaus2-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu9) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libsigsegv2:amd64 (2.10-4) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libmagic1:amd64 (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libgnutls-openssl27:amd64 (3.4.10-4ubuntu1.3) ... Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu1) ... No schema files found: doing nothing. Setting up libicu55:amd64 (55.1-7ubuntu0.2) ... Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.2) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.56-2) ... Setting up libfile-stripnondeterminism-perl (0.015-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up libcurl3:amd64 (7.47.0-1ubuntu2.2) ... Setting up libcurl4-openssl-dev:amd64 (7.47.0-1ubuntu2.2) ... Setting up libgmpxx4ldbl:amd64 (2:6.1.0+dfsg-2) ... Setting up libgmp-dev:amd64 (2:6.1.0+dfsg-2) ... Setting up libgnutlsxx28:amd64 (3.4.10-4ubuntu1.3) ... Setting up nettle-dev (3.2-1ubuntu0.16.04.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... Setting up libtasn1-6-dev:amd64 (4.7-3ubuntu0.16.04.2) ... Setting up libp11-kit-dev:amd64 (0.23.2-5~ubuntu16.04.1) ... Setting up pkg-config (0.29.1-0ubuntu1) ... Setting up libidn11-dev (1.32-3ubuntu1.1) ... Setting up libgnutls-dev:amd64 (3.4.10-4ubuntu1.3) ... Setting up staden-io-lib-trunk (1.13.10+583~ubuntu16.04.1) ... Setting up staden-io-lib-trunk-dev (1.13.10+583~ubuntu16.04.1) ... Setting up yasm (1.3.0-2) ... Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... Setting up libsnappy1v5:amd64 (1.1.3-2) ... Setting up libsnappy-dev:amd64 (1.1.3-2) ... Setting up seqan-dev (1.4.1+dfsg-2) ... Setting up debhelper (9.20160115ubuntu3) ... Setting up dh-autoreconf (11) ... Setting up dh-exec (0.23) ... Setting up sbuild-build-depends-libmaus2-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.015-1) ... Processing triggers for libc-bin (2.23-0ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-93-generic amd64 (x86_64) Toolchain package versions: binutils_2.26.1-1ubuntu1~16.04.4 dpkg-dev_1.18.4ubuntu1.2 g++-5_5.4.0-6ubuntu1~16.04.4 gcc-5_5.4.0-6ubuntu1~16.04.4 libc6-dev_2.23-0ubuntu9 libstdc++-5-dev_5.4.0-6ubuntu1~16.04.4 libstdc++6_5.4.0-6ubuntu1~16.04.4 linux-libc-dev_4.4.0-93.116 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.2.24 apt-transport-https_1.2.24 autoconf_2.69-9 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20150820.1 base-files_9.4ubuntu4.5 base-passwd_3.5.39 bash_4.3-14ubuntu1.2 binutils_2.26.1-1ubuntu1~16.04.4 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3.3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu3~16.04 cpp_4:5.3.1-1ubuntu1 cpp-5_5.4.0-6ubuntu1~16.04.4 dash_0.5.8-2.1ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20160115ubuntu3 debianutils_4.7 dh-autoreconf_11 dh-exec_0.23 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu10 dpkg_1.18.4ubuntu1.2 dpkg-dev_1.18.4ubuntu1.2 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1ubuntu1 g++-5_5.4.0-6ubuntu1~16.04.4 gcc_4:5.3.1-1ubuntu1 gcc-5_5.4.0-6ubuntu1~16.04.4 gcc-5-base_5.4.0-6ubuntu1~16.04.4 gcc-6-base_6.0.1-0ubuntu1 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3.1 gpgv_1.4.20-1ubuntu3.1 grep_2.25-1~16.04.1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.29ubuntu4 init-system-helpers_1.29ubuntu4 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2.7 libapt-pkg5.0_1.2.24 libarchive-zip-perl_1.56-2 libasan2_5.4.0-6ubuntu1~16.04.4 libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_5.4.0-6ubuntu1~16.04.4 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblkid1_2.27.1-6ubuntu3.3 libbz2-1.0_1.0.6-8 libc-bin_2.23-0ubuntu9 libc-dev-bin_2.23-0ubuntu9 libc6_2.23-0ubuntu9 libc6-dev_2.23-0ubuntu9 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.4.0-6ubuntu1~16.04.4 libcilkrts5_5.4.0-6ubuntu1~16.04.4 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3_7.47.0-1ubuntu2.2 libcurl3-gnutls_7.47.0-1ubuntu2.2 libcurl4-openssl-dev_7.47.0-1ubuntu2.2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1ubuntu3.3 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu10 libdpkg-perl_1.18.4ubuntu1.2 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-6ubuntu3.3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.015-1 libgcc-5-dev_5.4.0-6ubuntu1~16.04.4 libgcc1_1:6.0.1-0ubuntu1 libgcrypt20_1.6.5-2ubuntu0.3 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.2-0ubuntu1 libgmp-dev_2:6.1.0+dfsg-2 libgmp10_2:6.1.0+dfsg-2 libgmpxx4ldbl_2:6.1.0+dfsg-2 libgnutls-dev_3.4.10-4ubuntu1.3 libgnutls-openssl27_3.4.10-4ubuntu1.3 libgnutls30_3.4.10-4ubuntu1.3 libgnutlsxx28_3.4.10-4ubuntu1.3 libgomp1_5.4.0-6ubuntu1~16.04.4 libgpg-error0_1.21-2ubuntu1 libgssapi-krb5-2_1.13.2+dfsg-5ubuntu2 libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1 libhogweed4_3.2-1ubuntu0.16.04.1 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1 libicu55_55.1-7ubuntu0.2 libidn11_1.32-3ubuntu1.1 libidn11-dev_1.32-3ubuntu1.1 libisl15_0.16.1-1 libitm1_5.4.0-6ubuntu1~16.04.4 libk5crypto3_1.13.2+dfsg-5ubuntu2 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu5 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1 libkrb5-3_1.13.2+dfsg-5ubuntu2 libkrb5support0_1.13.2+dfsg-5ubuntu2 libldap-2.4-2_2.4.42+dfsg-2ubuntu3.2 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_5.4.0-6ubuntu1~16.04.4 liblz4-1_0.0~r131-2ubuntu2 liblzma-dev_5.1.1alpha+20120614-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-6ubuntu3.3 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libmpx0_5.4.0-6ubuntu1~16.04.4 libncurses5_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnettle6_3.2-1ubuntu0.16.04.1 libnih-dbus1_1.0.3-4.3ubuntu1 libnih1_1.0.3-4.3ubuntu1 libp11-kit-dev_0.23.2-5~ubuntu16.04.1 libp11-kit0_0.23.2-5~ubuntu16.04.1 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.1-9 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1ubuntu1 libprocps4_2:3.3.10-4ubuntu2.3 libquadmath0_5.4.0-6ubuntu1~16.04.4 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1 librtmp1_2.4+20151223.gitfa8646d-1ubuntu0.1 libsasl2-2_2.1.26.dfsg1-14build1 libsasl2-modules-db_2.1.26.dfsg1-14build1 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.4-3build2 libsemanage-common_2.3-1build3 libsemanage1_2.3-1build3 libsepol1_2.4-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-6ubuntu3.3 libsnappy-dev_1.1.3-2 libsnappy1v5_1.1.3-2 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4.8 libstdc++-5-dev_5.4.0-6ubuntu1~16.04.4 libstdc++6_5.4.0-6ubuntu1~16.04.4 libsystemd0_229-4ubuntu19 libtasn1-6_4.7-3ubuntu0.16.04.2 libtasn1-6-dev_4.7-3ubuntu0.16.04.2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1ubuntu1 libtool_2.4.6-0.1 libtsan0_5.4.0-6ubuntu1~16.04.4 libubsan0_5.4.0-6ubuntu1~16.04.4 libudev1_229-4ubuntu19 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3.3 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1 libxml2_2.9.3+dfsg1-1ubuntu0.2 linux-libc-dev_4.4.0-93.116 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5.3 lsb-base_9.20160110ubuntu0.2 m4_1.4.17-5 make_4.1-6 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-6ubuntu3.3 multiarch-support_2.23-0ubuntu9 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 nettle-dev_3.2-1ubuntu0.16.04.1 openssl_1.0.2g-1ubuntu4.8 optipng_0.7.6-1 passwd_1:4.2-3.1ubuntu5.3 patch_2.7.5-1 perl_5.22.1-9 perl-base_5.22.1-9 perl-modules-5.22_5.22.1-9 pkg-config_0.29.1-0ubuntu1 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-2 procps_2:3.3.10-4ubuntu2.3 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libmaus2-dummy_0.invalid.0 sed_4.2.2-7 sensible-utils_0.0.9 seqan-dev_1.4.1+dfsg-2 staden-io-lib-trunk_1.13.10+583~ubuntu16.04.1 staden-io-lib-trunk-dev_1.13.10+583~ubuntu16.04.1 systemd_229-4ubuntu19 systemd-sysv_229-4ubuntu19 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.3ubuntu2 tar_1.28-2.1ubuntu0.1 tzdata_2016j-0ubuntu0.16.04 ubuntu-keyring_2012.05.19 util-linux_2.27.1-6ubuntu3.3 xz-utils_5.1.1alpha+20120614-2ubuntu2 yasm_1.3.0-2 zlib1g_1:1.2.8.dfsg-2ubuntu4.1 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- dpkg-source: warning: extracting unsigned source package (libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1.dsc) dpkg-source: info: extracting libmaus2 in libmaus2-2.0.381 dpkg-source: info: unpacking libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13374425 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13374425 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13374425 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: source package libmaus2 dpkg-buildpackage: source version 2.0.381-1+706+201709141202~ubuntu16.04.1 dpkg-buildpackage: source distribution xenial dpkg-source --before-build libmaus2-2.0.381 dpkg-buildpackage: host architecture amd64 dpkg-source: info: using options from libmaus2-2.0.381/debian/source/options: --single-debian-patch dpkg-source: warning: --single-debian-patch is not a valid option for Dpkg::Source::Package::V3::Native fakeroot debian/rules clean dh clean --with autoreconf --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel dh_autoreconf_clean -O--parallel dh_clean -O--parallel rm -f debian/debhelper-build-stamp rm -f debian/libmaus2.substvars rm -f debian/libmaus2.*.debhelper rm -rf debian/libmaus2/ rm -f debian/libmaus2-dev.substvars rm -f debian/libmaus2-dev.*.debhelper rm -rf debian/libmaus2-dev/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build dh build --with autoreconf --parallel dh_testdir -O--parallel dh_update_autotools_config -O--parallel dh_autoreconf -O--parallel find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:6: installing './compile' configure.ac:4: installing './config.guess' configure.ac:4: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --with-snappy --with-seqan --with-io_lib --with-gnutls --with-nettle --with-yasm --with-lzma --disable-ssse3 --disable-sse4 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-snappy --with-seqan --with-io_lib --with-gnutls --with-nettle --with-yasm --with-lzma --disable-ssse3 --disable-sse4 configure: WARNING: unrecognized options: --disable-maintainer-mode, --with-seqan configure: Configuring for source in directory . checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking how to create a pax tar archive... gnutar checking dependency style of gcc... none checking whether we are cross compiling... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of g++... none checking whether host cpu is x86_64... yes checking whether host os is GNU/Linux... yes checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... yes checking size of unsigned long... 8 checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib... yes checking for zlib... yes checking whether we can compile a zlib program... yes checking snappy.h usability... yes checking snappy.h presence... yes checking for snappy.h... yes checking whether we can compile a program using snappy... yes checking for ANSI C header files... (cached) yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for unistd.h... (cached) yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking for stdint.h... (cached) yes checking for dlfcn.h... (cached) yes checking for dlopen... no checking for dlerror... no checking for dlsym... no checking for dlclose... no checking for dlopen in -ldl... yes checking for dlerror in -ldl... yes checking for dlsym in -ldl... yes checking for dlclose in -ldl... yes checking whether we found the dlopen function anywhere... yes checking whether we found the dlerror function anywhere... yes checking whether we found the dlsym function anywhere... yes checking whether we found the dlclose function anywhere... yes checking whether we found all the functions required for dynamic modules somewhere... yes checking whether we need the dl library for any of the dl functions... yes checking for aio_suspend in -lrt... yes checking for backtrace... yes checking for setrlimit... yes checking for fcntl... yes checking whether the C++ compiler supports the -std=gnu++0x flag... yes checking whether the C++ compiler supports the -msse4 flag... yes checking whether the C++ compiler supports the -msse2 flag... yes checking whether the C++ compiler supports the -mssse3 flag... yes checking whether the C++ compiler supports the -msse4.1 flag... yes checking whether the C++ compiler supports the -mavx flag... yes checking whether the C++ compiler supports the -mavx2 flag... yes checking smmintrin.h usability... yes checking smmintrin.h presence... yes checking for smmintrin.h... yes checking immintrin.h usability... yes checking immintrin.h presence... yes checking for immintrin.h... yes checking whether the C++ compiler supports _mm_load_si128... yes checking whether the C++ compiler supports _mm_loadu_si128... yes checking whether the C++ compiler supports _mm_store_si128... yes checking whether the C++ compiler supports _mm_andnot_si128... yes checking whether the C++ compiler supports _mm_or_si128... yes checking whether the C++ compiler supports _mm_cmpeq_epi8... yes checking whether the C++ compiler supports _mm_adds_epu8... yes checking whether the C++ compiler supports _mm_min_epu8... yes checking whether the C++ compiler supports _mm_shuffle_epi8... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... yes checking whether the C++ compiler supports _mm_cmpeq_epi16... yes checking whether the C++ compiler supports _mm_adds_epu16... yes checking whether the C++ compiler supports _mm_min_epu16... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... yes checking whether the C++ compiler supports _mm256_load_si256... yes checking whether the C++ compiler supports _mm256_loadu_si256... yes checking whether the C++ compiler supports _mm256_store_si256... yes checking whether the C++ compiler supports _mm256_andnot_si256... yes checking whether the C++ compiler supports _mm256_or_si256... yes checking whether the C++ compiler supports _mm256_cmpeq_epi8... yes checking whether the C++ compiler supports _mm256_adds_epu8... yes checking whether the C++ compiler supports _mm256_shuffle_epi8... yes checking whether the C++ compiler supports _mm256_min_epu8... yes checking whether the C++ compiler supports _mm256_permute2f128_si256... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... yes checking whether the C++ compiler supports _mm256_cmpeq_epi16... yes checking whether the C++ compiler supports _mm256_adds_epu16... yes checking whether the C++ compiler supports _mm256_min_epu16... yes checking whether the C++ compiler supports _mm256_max_epu16... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... yes checking whether the C++ compiler supports _mm256_and_si256... yes checking whether the C++ compiler supports _mm256_i32gather_epi32... yes checking whether the C++ compiler supports _mm256_extractf128_si256... yes checking whether the C++ compiler supports _mm256_set1_epi8... yes checking whether the C++ compiler supports _mm_extract_epi8... yes checking whether the C++ compiler supports all intrinsics required for one to many global alignment using AVX2... yes checking cstdint usability... yes checking cstdint presence... yes checking for cstdint... yes checking whether the C++ compiler supports the -msse4 flag... yes checking for mmap... yes checking for mmap flag MAP_HUGETLB... yes checking whether the C++ compiler supports the -W flag... yes checking whether the C++ compiler supports the -Wall flag... yes checking whether the C++ compiler supports the -Wabi flag... yes checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether std::unique_ptr exists... yes checking whether std::shared_ptr exists... yes checking boost/interprocess/smart_ptr/unique_ptr.hpp usability... no checking boost/interprocess/smart_ptr/unique_ptr.hpp presence... no checking for boost/interprocess/smart_ptr/unique_ptr.hpp... no checking boost/shared_ptr.hpp usability... no checking boost/shared_ptr.hpp presence... no checking for boost/shared_ptr.hpp... no checking whether std::unordered_map exists... yes checking whether std::unordered_set exists... yes checking boost/unordered_map.hpp usability... no checking boost/unordered_map.hpp presence... no checking for boost/unordered_map.hpp... no checking boost/unordered_set.hpp usability... no checking boost/unordered_set.hpp presence... no checking for boost/unordered_set.hpp... no checking whether std::move exists... yes checking whether boost::move exists... no checking for sys/types.h... (cached) yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking for windows.h... (cached) no checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking whether byte ordering is bigendian... no checking whether we can compile a program using posix regex... yes checking whether we can compile a program using statfs... yes checking whether struct statfs has field f_iosize... no checking whether struct statfs has field f_bsize... yes checking whether the C++ compiler supports the -pthread flag... yes checking for pthread spin lock support... yes checking for sem_post... yes checking for sem_wait... yes checking for sem_init... yes checking for sem_destroy... yes checking for sem_timedwait... yes checking for pthread_setname_np... yes checking for pthread_set_name_np... no checking for pthread_getname_np... yes checking for pthread_get_name_np... no checking for pthread_setaffinity_np... yes checking for prctl... yes checking for pthread_setaffinity_np support... checking whether the C++ compiler supports __sync_fetch_and_add... yes checking whether the C++ compiler supports __sync_add_and_fetch... yes checking whether the C++ compiler supports __sync_fetch_and_and... yes checking whether the C++ compiler supports __sync_fetch_and_or... yes checking whether the C++ compiler supports __sync_fetch_and_sub... yes checking whether the C++ compiler supports __sync_bool_compare_and_swap... yes checking whether the C++ compiler supports __sync_lock_test_and_set... yes checking whether the C++ compiler supports __sync_lock_release... yes checking whether the C++ compiler supports __sync_val_compare_and_swap... yes checking whether the C++ compiler supports synchronous lock operations... yes checking whether posix_memalign is present... yes checking whether getpagesize is present... yes checking io_lib/scram.h usability... yes checking io_lib/scram.h presence... yes checking for io_lib/scram.h... yes checking for scram_open... yes checking for scram_open_cram_via_callbacks... yes checking for scram_close... yes checking for scram_get_header... yes checking for scram_get_seq... yes checking for scram_set_option... yes checking for scram_open_cram_via_callbacks... (cached) yes checking for cram_index_load_via_callbacks... yes checking for cram_allocate_encoder... yes checking for cram_deallocate_encoder... yes checking for cram_enque_compression_block... yes checking for cram_process_work_package... yes checking whether we can compile a program using io_lib... yes checking whether we can compile a program using scram_open_cram_via_callbacks in io_lib... yes checking whether we can compile a program using cram_index_load_via_callbacks in io_lib... yes checking whether MSG_CMSG_CLOEXEC is defined... yes checking for liblzma... yes checking lzma.h usability... yes checking lzma.h presence... yes checking for lzma.h... yes checking whether we can compile a program using the lzma library... yes checking for gnutls... yes checking whether we can compile a gnutls program... yes checking for nettle... yes checking whether we can compile a nettle program... yes checking whether we can compile a program including nettle/sha3.h... yes checking libkern/OSAtomic.h usability... no checking libkern/OSAtomic.h presence... no checking for libkern/OSAtomic.h... no checking for unsigned __int128... yes checking whether we can compile a program using the gmp library... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating libmaus2.pc config.status: creating libmaus2digests.pc config.status: creating libmaus2irods.pc config.status: creating libmaus2seqchksumsfactory.pc config.status: creating libmaus2fftw.pc config.status: creating ubuntu.sh config.status: creating src/libmaus2/LibMausConfig.hpp config.status: creating test/Makefile config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode, --with-seqan make[1]: Leaving directory '/<>' dh_auto_build -O--parallel make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' /usr/bin/yasm -f x64 -f elf64 -X gnu -g dwarf2 -D LINUX -o sha256_sse4.o /<>/src/libmaus2/digest/sha256_sse4.asm /usr/bin/yasm -f x64 -f elf64 -X gnu -g dwarf2 -D LINUX -o sha256_avx1.o /<>/src/libmaus2/digest/sha256_avx1.asm /usr/bin/yasm -f x64 -f elf64 -X gnu -g dwarf2 -D LINUX -o sha512_avx.o /<>/src/libmaus2/digest/sha512_avx.asm /usr/bin/yasm -f x64 -f elf64 -X gnu -g dwarf2 -D LINUX -o sha512_sse4.o /<>/src/libmaus2/digest/sha512_sse4.asm g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse4 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_sse4_a-CRC32C_sse42.o `test -f 'libmaus2/digest/CRC32C_sse42.cpp' || echo './'`libmaus2/digest/CRC32C_sse42.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse4 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_sse4_a-DigestFactory_CRC32C_SSE42.o `test -f 'libmaus2/digest/DigestFactory_CRC32C_SSE42.cpp' || echo './'`libmaus2/digest/DigestFactory_CRC32C_SSE42.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2_la-md5.lo `test -f 'libmaus2/digest/md5.cpp' || echo './'`libmaus2/digest/md5.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/libmaus2_la-I386CacheLineSize.lo `test -f 'libmaus2/util/I386CacheLineSize.cpp' || echo './'`libmaus2/util/I386CacheLineSize.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/digest/md5.cpp -fPIC -DPIC -o libmaus2/digest/.libs/libmaus2_la-md5.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/I386CacheLineSize.cpp -fPIC -DPIC -o libmaus2/util/.libs/libmaus2_la-I386CacheLineSize.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/digest/md5.cpp -o libmaus2/digest/libmaus2_la-md5.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/I386CacheLineSize.cpp -o libmaus2/util/libmaus2_la-I386CacheLineSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/math/libmaus2_la-primes16.lo `test -f 'libmaus2/math/primes16.cpp' || echo './'`libmaus2/math/primes16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/math/primes16.cpp -fPIC -DPIC -o libmaus2/math/.libs/libmaus2_la-primes16.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/math/primes16.cpp -o libmaus2/math/libmaus2_la-primes16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/libmaus2_la-OutputFileNameTools.lo `test -f 'libmaus2/util/OutputFileNameTools.cpp' || echo './'`libmaus2/util/OutputFileNameTools.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2_la-CigarStringParser.lo `test -f 'libmaus2/bambam/CigarStringParser.cpp' || echo './'`libmaus2/bambam/CigarStringParser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/libmaus2_la-OutputFileNameTools.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-CigarStringParser.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -o libmaus2/util/libmaus2_la-OutputFileNameTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/libmaus2_la-Phred.lo `test -f 'libmaus2/fastx/Phred.cpp' || echo './'`libmaus2/fastx/Phred.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2_la-CollatingBamDecoder.lo `test -f 'libmaus2/bambam/CollatingBamDecoder.cpp' || echo './'`libmaus2/bambam/CollatingBamDecoder.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/libmaus2_la-Phred.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -o libmaus2/fastx/libmaus2_la-Phred.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2_la-ReadEndsContainer.lo `test -f 'libmaus2/bambam/ReadEndsContainer.cpp' || echo './'`libmaus2/bambam/ReadEndsContainer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/CollatingBamDecoder.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-CollatingBamDecoder.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2_la-ReadEnds.lo `test -f 'libmaus2/bambam/ReadEnds.cpp' || echo './'`libmaus2/bambam/ReadEnds.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-ReadEndsContainer.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-ReadEnds.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -o 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compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -fPIC -DPIC -o libmaus2/aio/.libs/libmaus2_la-OutputStreamFactoryContainer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/libmaus2_la-TraceBlock.lo `test -f 'libmaus2/dazzler/align/TraceBlock.cpp' || echo 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|| echo './'`libmaus2/dazzler/align/ApproximateRun.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/libmaus2_la-ApproximateRun.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -o libmaus2/dazzler/align/libmaus2_la-TraceBlock.o >/dev/null 2>&1 libtool: 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'libmaus2/dazzler/align/OverlapMeta.cpp' || echo './'`libmaus2/dazzler/align/OverlapMeta.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/libmaus2_la-OverlapMeta.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -o libmaus2/aio/libmaus2_la-OutputStreamFactoryContainer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -o libmaus2/dazzler/align/libmaus2_la-OverlapMeta.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_la-DalignerLocalAlignment.lo `test -f 'libmaus2/lcs/DalignerLocalAlignment.cpp' || echo './'`libmaus2/lcs/DalignerLocalAlignment.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/DalignerLocalAlignment.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-DalignerLocalAlignment.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/libmaus2_la-Tandem.lo `test 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'libmaus2/dazzler/align/TandemVector.cpp' || echo './'`libmaus2/dazzler/align/TandemVector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/libmaus2_la-TandemVector.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/DalignerLocalAlignment.cpp -o libmaus2/lcs/libmaus2_la-DalignerLocalAlignment.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -o libmaus2/dazzler/align/libmaus2_la-Tandem.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -o libmaus2/dazzler/align/libmaus2_la-TandemVector.o >/dev/null 2>&1 libtool: 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libmaus2/fastx/libmaus2_la-DNAIndexMetaData.lo `test -f 'libmaus2/fastx/DNAIndexMetaData.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaData.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaData.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2_la-PileVectorElement.lo `test -f 'libmaus2/bambam/PileVectorElement.cpp' || echo './'`libmaus2/bambam/PileVectorElement.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-PileVectorElement.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c 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libmaus2/digest/libmaus2_la-SHA3_256.lo `test -f 'libmaus2/digest/SHA3_256.cpp' || echo './'`libmaus2/digest/SHA3_256.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -fPIC -DPIC -o libmaus2/digest/.libs/libmaus2_la-SHA3_256.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataBigBand.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBand.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBand.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaDataBigBand.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c 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-std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaDataBigBandBiDir.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -o libmaus2/digest/libmaus2_la-SHA3_256.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c 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-fPIC -DPIC -o libmaus2/rank/.libs/libmaus2_la-DNARankBiDirRange.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_la-NNPTraceElement.lo `test -f 'libmaus2/lcs/NNPTraceElement.cpp' || echo './'`libmaus2/lcs/NNPTraceElement.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -fPIC -DPIC -o 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-DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/libmaus2_la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/libmaus2_la-FastAToCompact4BigBand.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o 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--mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/libmaus2_la-HugePages.lo `test -f 'libmaus2/util/HugePages.cpp' || echo './'`libmaus2/util/HugePages.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/HugePages.cpp -fPIC -DPIC -o libmaus2/util/.libs/libmaus2_la-HugePages.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lz/libmaus2_la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/libmaus2_la-ZlibInterface.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor 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'./'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86GlobalAlignmentX128_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 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'./'`libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_simd_align_256_la-AlignmentOneAgainstManyAVX2.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c -o libmaus2/bambam/libmaus2_scram_mod_la-Scram.lo `test -f 'libmaus2/bambam/Scram.c' || echo './'`libmaus2/bambam/Scram.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor 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'libmaus2/irods/IRodsSystem.cpp' || echo './'`libmaus2/irods/IRodsSystem.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/irods/libmaus2_irods_a-IRodsFileBase.o `test -f 'libmaus2/irods/IRodsFileBase.cpp' || echo './'`libmaus2/irods/IRodsFileBase.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2seqchksumsfactory_a-ChecksumsFactory.o `test -f 'libmaus2/bambam/ChecksumsFactory.cpp' || echo './'`libmaus2/bambam/ChecksumsFactory.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 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'./'`libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtMergeSort.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -o 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"libmaus2_simd_align_128.la" && ln -s "../libmaus2_simd_align_128.la" "libmaus2_simd_align_128.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -msse2 -mssse3 -msse4.1 -mavx2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:381:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_simd_align_256.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo 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-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/5/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.381 libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so.2" && ln -s "libmaus2_simd_align_256.so.2.0.381" "libmaus2_simd_align_256.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so" && ln -s "libmaus2_simd_align_256.so.2.0.381" "libmaus2_simd_align_256.so") libtool: link: ar cru .libs/libmaus2_simd_align_256.a libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/libmaus2_simd_align_256_la-AlignmentOneAgainstManyAVX2.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libmaus2_simd_align_256.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_256.la" && ln -s "../libmaus2_simd_align_256.la" "libmaus2_simd_align_256.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -lstaden-read -Wl,-Bsymbolic-functions -Wl,-z,relro -lrt -lz -llzma -module -shared -export-dynamic -avoid-version -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_scram_mod.la -rpath /usr/lib/x86_64-linux-gnu/libmaus2/2.0.381 libmaus2/bambam/libmaus2_scram_mod_la-Scram.lo -lstaden-read -lrt -lz -llzma -lrt -lz -llzma libtool: link: gcc -shared -fPIC -DPIC libmaus2/bambam/.libs/libmaus2_scram_mod_la-Scram.o /usr/lib/x86_64-linux-gnu/libstaden-read.so -lrt -lz -llzma -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_scram_mod.so -o .libs/libmaus2_scram_mod.so libtool: link: ( cd ".libs" && rm -f "libmaus2_scram_mod.la" && ln -s "../libmaus2_scram_mod.la" "libmaus2_scram_mod.la" ) g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testAIO.o test/testAIO.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbitbtree.o test/testbitbtree.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testBitIO.o test/testBitIO.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtComputeSSA.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong 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-DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testarraydecode.o test/testarraydecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsnappy-testsnappy.o `test -f 'test/testsnappy.cpp' || echo './'`test/testsnappy.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsnappyconcat-testsnappyconcat.o `test -f 'test/testsnappyconcat.cpp' || echo './'`test/testsnappyconcat.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbwtmergeinternal.o test/testbwtmergeinternal.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastarewrite.o test/testfastarewrite.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastarecode.o test/testfastarecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o 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'./'`test/testgamma.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcompact.o test/testcompact.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbytetocompact.o test/testbytetocompact.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testscramtosam-testscramtosam.o `test -f 'test/testscramtosam.cpp' || echo './'`test/testscramtosam.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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libmaus2/lcs/.libs/libmaus2_la-AlignerFactory.o libmaus2/lcs/.libs/libmaus2_la-BandedAlignerFactory.o libmaus2/aio/.libs/libmaus2_la-InputStreamInstance.o libmaus2/lcs/.libs/libmaus2_la-DalignerNP.o libmaus2/aio/.libs/libmaus2_la-OutputStreamInstance.o libmaus2/aio/.libs/libmaus2_la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/.libs/libmaus2_la-TraceBlock.o libmaus2/dazzler/align/.libs/libmaus2_la-ApproximateRun.o libmaus2/suffixsort/.libs/libmaus2_la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/.libs/libmaus2_la-OverlapMeta.o libmaus2/lcs/.libs/libmaus2_la-DalignerLocalAlignment.o libmaus2/dazzler/align/.libs/libmaus2_la-Tandem.o libmaus2/dazzler/align/.libs/libmaus2_la-TandemVector.o libmaus2/math/.libs/libmaus2_la-GmpInteger.o libmaus2/math/.libs/libmaus2_la-GmpFloat.o libmaus2/dazzler/align/.libs/libmaus2_la-TracePoint.o libmaus2/lz/.libs/libmaus2_la-XzDecoder.o libmaus2/util/.libs/libmaus2_la-ArgParser.o libmaus2/lcs/.libs/libmaus2_la-FragmentEnvelopeYScore.o libmaus2/lcs/.libs/libmaus2_la-FragmentEnvelopeFragment.o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaDataSequence.o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaData.o libmaus2/bambam/.libs/libmaus2_la-PileVectorElement.o libmaus2/digest/.libs/libmaus2_la-SHA3_256.o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaDataBigBand.o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaDataBigBandBiDir.o libmaus2/lcs/.libs/libmaus2_la-EnvelopeFragment.o libmaus2/rank/.libs/libmaus2_la-DNARankBiDirRange.o libmaus2/lcs/.libs/libmaus2_la-NNPTraceElement.o libmaus2/lcs/.libs/libmaus2_la-NNPTraceContainer.o libmaus2/lcs/.libs/libmaus2_la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtComputeSSA.o libmaus2/fastx/.libs/libmaus2_la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtMergeSortResult.o libmaus2/util/.libs/libmaus2_la-HugePages.o libmaus2/lz/.libs/libmaus2_la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtSelectSSA.o libmaus2/aio/.libs/libmaus2_la-FileRemoval.o libmaus2/rank/.libs/libmaus2_la-DNARankMEM.o libmaus2/lcs/.libs/libmaus2_la-ChainAddQueueElement.o libmaus2/lcs/.libs/libmaus2_la-Chain.o libmaus2/lcs/.libs/libmaus2_la-ChainNode.o libmaus2/lcs/.libs/libmaus2_la-ChainNodeInfo.o libmaus2/lcs/.libs/libmaus2_la-ChainRemoveQueueElement.o libmaus2/lcs/.libs/libmaus2_la-ChainSplayTreeNode.o libmaus2/timing/.libs/libmaus2_la-RealTimeClock.o libmaus2/aio/.libs/libmaus2_la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/.libs/libmaus2_la-OverlapHeader.o libmaus2/bambam/.libs/libmaus2_la-BamAlignment.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-MergeStrategyMergeInput.o libmaus2/util/.libs/libmaus2_la-Command.o libmaus2/util/.libs/libmaus2_la-CommandContainer.o libmaus2/aio/.libs/libmaus2_la-InputOutputStreamInstance.o libmaus2/dazzler/align/.libs/libmaus2_la-OverlapInfo.o -L/lib -ldl -lsnappy -lgnutls -lnettle -lgmp -lrt -lz -llzma -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/5/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2.so.2 -o .libs/libmaus2.so.2.0.381 test/testavx.cpp:20:20: warning: ‘std::__cxx11::string numString(uint64_t, uint64_t)’ defined but not used [-Wunused-function] static std::string numString(uint64_t const from, uint64_t const to) ^ libtool: link: (cd ".libs" && rm -f "libmaus2.so.2" && ln -s "libmaus2.so.2.0.381" "libmaus2.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2.so" && ln -s "libmaus2.so.2.0.381" "libmaus2.so") libtool: link: ar cru .libs/libmaus2.a libmaus2/libmaus2_la-StaticInitialization.o libmaus2/autoarray/libmaus2_la-AutoArray.o libmaus2/bitio/libmaus2_la-CompactArray.o libmaus2/rank/libmaus2_la-RankTable.o libmaus2/rank/libmaus2_la-log2table.o libmaus2/fastx/libmaus2_la-isFastQ.o libmaus2/wavelet/libmaus2_la-toWaveletTreeBits.o libmaus2/suffixsort/libmaus2_la-divsufsort.o libmaus2/rmq/libmaus2_la-FischerSystematicSuccinctRMQ.o libmaus2/lcp/libmaus2_la-OracleLCP.o libmaus2/util/libmaus2_la-StackTrace.o libmaus2/lcs/libmaus2_la-OverlapComputation.o libmaus2/lcs/libmaus2_la-HashContainer.o libmaus2/lcs/libmaus2_la-HashContainer2.o libmaus2/digest/libmaus2_la-md5.o libmaus2/util/libmaus2_la-I386CacheLineSize.o libmaus2/math/libmaus2_la-primes16.o libmaus2/util/libmaus2_la-OutputFileNameTools.o libmaus2/select/libmaus2_la-ESelectBase.o libmaus2/bambam/libmaus2_la-CigarStringParser.o libmaus2/graph/libmaus2_la-EdgeList.o libmaus2/fastx/libmaus2_la-Phred.o libmaus2/network/libmaus2_la-sendReceiveFd.o libmaus2/lz/libmaus2_la-SnappyCompress.o libmaus2/bambam/libmaus2_la-CollatingBamDecoder.o libmaus2/bambam/libmaus2_la-ReadEndsContainer.o libmaus2/bambam/libmaus2_la-ReadEnds.o libmaus2/huffman/libmaus2_la-IndexLoaderBase.o libmaus2/bambam/libmaus2_la-BamAlignmentDecoderBase.o libmaus2/bambam/libmaus2_la-StrCmpNum.o libmaus2/huffman/libmaus2_la-KvInitResult.o libmaus2/fm/libmaus2_la-MausFmToBwaConversion.o libmaus2/util/libmaus2_la-TempFileNameGenerator.o libmaus2/util/libmaus2_la-TempFileNameGeneratorState.o libmaus2/util/libmaus2_la-ArgInfo.o libmaus2/util/libmaus2_la-Array832.o libmaus2/util/libmaus2_la-Array864.o libmaus2/util/libmaus2_la-BitList.o libmaus2/util/libmaus2_la-VarBitList.o libmaus2/util/libmaus2_la-Concat.o libmaus2/util/libmaus2_la-ConcatRequest.o libmaus2/util/libmaus2_la-ConsoleColor.o libmaus2/util/libmaus2_la-Demangle.o libmaus2/util/libmaus2_la-DynamicLoading.o libmaus2/util/libmaus2_la-GetFileSize.o libmaus2/util/libmaus2_la-Histogram.o libmaus2/util/libmaus2_la-HistogramSet.o libmaus2/util/libmaus2_la-IncreasingList.o libmaus2/util/libmaus2_la-IntervalTree.o libmaus2/util/libmaus2_la-GenericIntervalTree.o libmaus2/util/libmaus2_la-LogPipe.o libmaus2/util/libmaus2_la-LogPipeMultiplex.o libmaus2/util/libmaus2_la-LogPipeMultiplexGeneric.o libmaus2/util/libmaus2_la-LookupIntervalTree.o libmaus2/digest/libmaus2_la-md5_interface.o libmaus2/util/libmaus2_la-MemLimit.o libmaus2/util/libmaus2_la-MemUsage.o libmaus2/util/libmaus2_la-NearestNeighbourDictionary.o libmaus2/util/libmaus2_la-NegativeDifferenceArray32.o libmaus2/util/libmaus2_la-NegativeDifferenceArray64.o libmaus2/util/libmaus2_la-nstat.o libmaus2/util/libmaus2_la-PositiveDifferenceArray32.o libmaus2/util/libmaus2_la-PositiveDifferenceArray64.o libmaus2/util/libmaus2_la-PosixExecute.o libmaus2/util/libmaus2_la-PosixFileDescriptor.o libmaus2/util/libmaus2_la-PosixInputFile.o libmaus2/util/libmaus2_la-SaturatingCounter.o libmaus2/util/libmaus2_la-StringSerialisation.o libmaus2/util/libmaus2_la-SuccinctBorderArray.o libmaus2/util/libmaus2_la-Terminal.o libmaus2/util/libmaus2_la-OctetString.o libmaus2/util/libmaus2_la-Utf8String.o libmaus2/util/libmaus2_la-Utf8BlockIndexDecoder.o libmaus2/util/libmaus2_la-Utf8BlockIndex.o libmaus2/util/libmaus2_la-Utf8DecoderBuffer.o libmaus2/util/libmaus2_la-Utf8DecoderWrapper.o libmaus2/suffixtree/libmaus2_la-CompressedSuffixTree.o libmaus2/bambam/libmaus2_la-AlignmentValidity.o libmaus2/bambam/libmaus2_la-BamFlagBase.o libmaus2/bambam/libmaus2_la-ReadGroup.o libmaus2/bambam/libmaus2_la-DuplicationMetrics.o libmaus2/bambam/libmaus2_la-BamDefaultAdapters.o libmaus2/bambam/libmaus2_la-BamRange.o libmaus2/graph/libmaus2_la-GraphEdge.o libmaus2/bambam/libmaus2_la-BamIndexBinChunk.o libmaus2/bambam/libmaus2_la-BamIndexLinearChunk.o libmaus2/huffman/libmaus2_la-HuffmanTree.o libmaus2/bambam/libmaus2_la-BamAlignmentDecoderInfo.o libmaus2/lz/libmaus2_la-Lz4Base.o libmaus2/lz/libmaus2_la-Lz4Compress.o libmaus2/lz/libmaus2_la-Lz4DecoderBuffer.o libmaus2/lz/libmaus2_la-lz4.o libmaus2/fm/libmaus2_la-BidirectionalIndexInterval.o libmaus2/fm/libmaus2_la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/libmaus2_la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/libmaus2_la-FastALineParserLineInfo.o libmaus2/fastx/libmaus2_la-FastAMatchTable.o libmaus2/lcs/libmaus2_la-EditDistanceResult.o libmaus2/fastx/libmaus2_la-FastABgzfIndexEntry.o libmaus2/fastx/libmaus2_la-FastABgzfIndex.o libmaus2/parallel/libmaus2_la-ThreadWorkPackage.o libmaus2/parallel/libmaus2_la-SimpleThreadWorkPackage.o libmaus2/lz/libmaus2_la-RAZFIndex.o libmaus2/fastx/libmaus2_la-FastAIndexEntry.o libmaus2/fastx/libmaus2_la-FastAIndex.o libmaus2/network/libmaus2_la-HttpAbsoluteUrl.o libmaus2/hashing/libmaus2_la-Crc32.o libmaus2/hashing/libmaus2_la-MurmurHash3.o libmaus2/lz/libmaus2_la-IGzipDeflate.o libmaus2/lcs/libmaus2_la-LocalBaseConstants.o libmaus2/lcs/libmaus2_la-LocalEditDistanceResult.o libmaus2/bambam/libmaus2_la-BamHeaderParserStateBase.o libmaus2/bambam/libmaus2_la-GeneFlatFile.o libmaus2/bambam/libmaus2_la-GeneFlatFileEntry.o libmaus2/trie/libmaus2_la-SimpleTrie.o libmaus2/network/libmaus2_la-GnuTLSInit.o libmaus2/network/libmaus2_la-GnuTLSSocket.o libmaus2/bambam/libmaus2_la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/libmaus2_la-FactorMatchInfo.o libmaus2/alignment/libmaus2_la-KmerInfo.o libmaus2/bambam/libmaus2_la-SamInfoBase.o libmaus2/digest/libmaus2_la-SHA1.o libmaus2/digest/libmaus2_la-SHA2_224.o libmaus2/digest/libmaus2_la-SHA2_256.o libmaus2/digest/libmaus2_la-SHA2_384.o libmaus2/digest/libmaus2_la-SHA2_512.o libmaus2/digest/libmaus2_la-CRC32.o libmaus2/digest/libmaus2_la-CRC32C_Core.o libmaus2/digest/libmaus2_la-CRC32C.o libmaus2/digest/libmaus2_la-CRC32_Core.o libmaus2/bambam/parallel/libmaus2_la-ValidationFragment.o libmaus2/bambam/parallel/libmaus2_la-GenericInputControlStreamInfo.o libmaus2/fastx/libmaus2_la-NameInfoBase.o libmaus2/bambam/parallel/libmaus2_la-RefIdInterval.o libmaus2/fastx/libmaus2_la-RefPathToken.o libmaus2/fastx/libmaus2_la-RefPathTokenVector.o libmaus2/dazzler/db/libmaus2_la-FastaInfo.o libmaus2/dazzler/db/libmaus2_la-IndexBase.o libmaus2/dazzler/db/libmaus2_la-DatabaseFile.o libmaus2/dazzler/db/libmaus2_la-Read.o libmaus2/dazzler/align/libmaus2_la-Path.o libmaus2/dazzler/align/libmaus2_la-Overlap.o libmaus2/lcs/libmaus2_la-AlignmentStatistics.o libmaus2/fastx/libmaus2_la-SingleWordDNABitBuffer.o libmaus2/util/libmaus2_la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/libmaus2_la-AlignerFactory.o libmaus2/lcs/libmaus2_la-BandedAlignerFactory.o libmaus2/aio/libmaus2_la-InputStreamInstance.o libmaus2/lcs/libmaus2_la-DalignerNP.o libmaus2/aio/libmaus2_la-OutputStreamInstance.o libmaus2/aio/libmaus2_la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/libmaus2_la-TraceBlock.o libmaus2/dazzler/align/libmaus2_la-ApproximateRun.o libmaus2/suffixsort/libmaus2_la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/libmaus2_la-OverlapMeta.o libmaus2/lcs/libmaus2_la-DalignerLocalAlignment.o libmaus2/dazzler/align/libmaus2_la-Tandem.o libmaus2/dazzler/align/libmaus2_la-TandemVector.o libmaus2/math/libmaus2_la-GmpInteger.o libmaus2/math/libmaus2_la-GmpFloat.o libmaus2/dazzler/align/libmaus2_la-TracePoint.o libmaus2/lz/libmaus2_la-XzDecoder.o libmaus2/util/libmaus2_la-ArgParser.o libmaus2/lcs/libmaus2_la-FragmentEnvelopeYScore.o libmaus2/lcs/libmaus2_la-FragmentEnvelopeFragment.o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataSequence.o libmaus2/fastx/libmaus2_la-DNAIndexMetaData.o libmaus2/bambam/libmaus2_la-PileVectorElement.o libmaus2/digest/libmaus2_la-SHA3_256.o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataBigBand.o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataBigBandBiDir.o libmaus2/lcs/libmaus2_la-EnvelopeFragment.o libmaus2/rank/libmaus2_la-DNARankBiDirRange.o libmaus2/lcs/libmaus2_la-NNPTraceElement.o libmaus2/lcs/libmaus2_la-NNPTraceContainer.o libmaus2/lcs/libmaus2_la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/libmaus2_la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtComputeSSA.o libmaus2/fastx/libmaus2_la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtMergeSortResult.o libmaus2/util/libmaus2_la-HugePages.o libmaus2/lz/libmaus2_la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtSelectSSA.o libmaus2/aio/libmaus2_la-FileRemoval.o libmaus2/rank/libmaus2_la-DNARankMEM.o libmaus2/lcs/libmaus2_la-ChainAddQueueElement.o libmaus2/lcs/libmaus2_la-Chain.o libmaus2/lcs/libmaus2_la-ChainNode.o libmaus2/lcs/libmaus2_la-ChainNodeInfo.o libmaus2/lcs/libmaus2_la-ChainRemoveQueueElement.o libmaus2/lcs/libmaus2_la-ChainSplayTreeNode.o libmaus2/timing/libmaus2_la-RealTimeClock.o libmaus2/aio/libmaus2_la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/libmaus2_la-OverlapHeader.o libmaus2/bambam/libmaus2_la-BamAlignment.o libmaus2/suffixsort/bwtb3m/libmaus2_la-MergeStrategyMergeInput.o libmaus2/util/libmaus2_la-Command.o libmaus2/util/libmaus2_la-CommandContainer.o libmaus2/aio/libmaus2_la-InputOutputStreamInstance.o libmaus2/dazzler/align/libmaus2_la-OverlapInfo.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libmaus2.a libtool: link: ( cd ".libs" && rm -f "libmaus2.la" && ln -s "../libmaus2.la" "libmaus2.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testAIO test/testAIO.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbitbtree test/testbitbtree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testBitIO test/testBitIO.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbtree test/testbtree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong 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-rdynamic -o .libs/testdl test/testdl.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastarewrite test/testfastarewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdifenc test/testdifenc.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp 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-pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastarecode test/testfastarecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastarewrite test/testfastarewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamrange test/testbamrange.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamtofastq test/testbamtofastq-testbamtofastq.o -ldl ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamdamage test/testbamdamage-testbamdamage.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lsnappy -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testgamma test/testgamma-testgamma.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: 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./.libs/libmaus2_simd_align_256.so -lsnappy -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcompact test/testcompact.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbytetocompact test/testbytetocompact.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testscramtosam test/testscramtosam-testscramtosam.o libmaus2_irods.a libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testpacdecode test/testpacdecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcompact test/testcompact.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbytetocompact test/testbytetocompact.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testscramtosam test/testscramtosam-testscramtosam.o libmaus2_irods.a ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testutf8split test/testutf8split.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcirchash test/testcirchash-testcirchash.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lsnappy -ldl -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testpacdecode test/testpacdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testrmmtree test/testrmmtree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testutf8split test/testutf8split.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcst test/testcst.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcirchash test/testcirchash-testcirchash.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -ldl -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testrmmtree test/testrmmtree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamcmp test/testbamcmp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcst test/testcst.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong 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-Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testrazdec test/testrazdec-testrazdec.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -lgnutls -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testhttp test/testhttp-testhttp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfaindex test/testfaindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -lgnutls -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testftp test/testftp-testftp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testrlhist test/testrlhist.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastablockrecode test/testfastablockrecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g 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-pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdiag test/testdiag-testdiag.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testrlhist test/testrlhist.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlinuxstreamingwrite test/testlinuxstreamingwrite-testlinuxstreamingwrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testnumcpus test/testnumcpus.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdiag test/testdiag-testdiag.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlinuxstreamingwrite test/testlinuxstreamingwrite-testlinuxstreamingwrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testgeneflatfile test/testgeneflatfile-testgeneflatfile.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -lgnutls -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testurlinputstream test/testurlinputstream-testurlinputstream.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsimpletrie test/testsimpletrie.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgeneflatfile test/testgeneflatfile-testgeneflatfile.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -lgnutls -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testgnutls test/testgnutls-testgnutls.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testurlinputstream test/testurlinputstream-testurlinputstream.o -lgnutls ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsimpletrie test/testsimpletrie.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlru test/testlru.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbytecnt test/testbytecnt.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o teststronglyconnectedcomponents test/teststronglyconnectedcomponents.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgnutls test/testgnutls-testgnutls.o -lgnutls ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlru test/testlru.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testtopologicalsorting test/testtopologicalsorting.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/teststronglyconnectedcomponents test/teststronglyconnectedcomponents.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbytecnt test/testbytecnt.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlinebuffer test/testlinebuffer-testlinebuffer.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsamdecoder test/testsamdecoder-testsamdecoder.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testtopologicalsorting test/testtopologicalsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsamdecoder test/testsamdecoder-testsamdecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlinebuffer test/testlinebuffer-testlinebuffer.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testunsignedinteger test/testunsignedinteger-testunsignedinteger.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testmd5 test/testmd5-testmd5.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsha test/testsha-testsha.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lnettle libmaus2digests.a libmaus2digests_sse4.a -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread 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./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbammateerase test/testbammateerase.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -L/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lsnappy -ldl libmaus2seqchksumsfactory.a libmaus2digests.a libmaus2digests_sse4.a -lgmp -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -ldl -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbammateerase test/testbammateerase.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o -L/lib ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -ldl libmaus2seqchksumsfactory.a libmaus2digests.a libmaus2digests_sse4.a -lgmp -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testmapperm test/testmapperm-testmapperm.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lsnappy -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastqtobam test/testfastqtobam-testfastqtobam.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testmapperm test/testmapperm-testmapperm.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastqtobam test/testfastqtobam-testfastqtobam.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsamrecoding test/testsamrecoding-testsamrecoding.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdazzlerdb test/testdazzlerdb-testdazzlerdb.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testnd test/testnd-testnd.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsamrecoding test/testsamrecoding-testsamrecoding.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdazzlerdb test/testdazzlerdb-testdazzlerdb.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testnd test/testnd-testnd.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastashred test/testfastashred-testfastashred.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testalignerspeed test/testalignerspeed-testalignerspeed.o libmaus2.la 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.libs/testalignerspeed test/testalignerspeed-testalignerspeed.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testxz test/testxz-testxz.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastasingleline test/testfastasingleline-testfastasingleline.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdazzlerindex test/testdazzlerindex-testdazzlerindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testargparser test/testargparser-testargparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma libtool: link: 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test/testfragmentenvelope-testfragmentenvelope.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdazzlerindex test/testdazzlerindex-testdazzlerindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testargparser test/testargparser-testargparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 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-Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testavx test/testavx-testavx.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlognormal test/testlognormal-testlognormal.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread libtool: link: g++ -mavx2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testavx test/testavx-testavx.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -lz -llzma -fopenmp -pthread make[3]: Leaving directory '/<>/src' Making all in test make[3]: Entering directory '/<>/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -O--parallel make -j4 check make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/src' Making check in test make[2]: Entering directory '/<>/test' make check-TESTS make[3]: Entering directory '/<>/test' make[4]: Entering directory '/<>/test' PASS: testargparser.sh PASS: testarrayinput.sh PASS: testarraydecode.sh PASS: testautoarray2d.sh PASS: testbitbtree.sh PASS: testdnarank.sh PASS: testintervaltree.sh PASS: testAIO.sh PASS: testBitIO.sh PASS: testRank.sh ============================================================================ Testsuite summary for libmaus2 2.0.381 ============================================================================ # TOTAL: 10 # PASS: 10 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/test' make[3]: Leaving directory '/<>/test' make[2]: Leaving directory '/<>/test' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' fakeroot debian/rules binary dh binary --with autoreconf --parallel dh_testroot -O--parallel dh_prep -O--parallel rm -f debian/libmaus2.substvars rm -f debian/libmaus2.*.debhelper rm -rf debian/libmaus2/ rm -f debian/libmaus2-dev.substvars rm -f debian/libmaus2-dev.*.debhelper rm -rf debian/libmaus2-dev/ dh_auto_install -O--parallel install -d debian/libmaus2 install -d debian/libmaus2-dev make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /usr/bin/install -c -m 644 libmaus2digests.a libmaus2digests_sse4.a libmaus2_irods.a libmaus2seqchksumsfactory.a libmaus2fftw.a '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.381' /bin/bash ../libtool --mode=install /usr/bin/install -c libmaus2_scram_mod.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.381' /usr/bin/install -c -m 644 libmaus2/LibMausConfig.hpp '/<>/debian/tmp/usr/include/libmaus2/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/AsynchronousBufferReader.hpp libmaus2/aio/AsynchronousWriter.hpp libmaus2/aio/AsynchronousReader.hpp libmaus2/aio/OutputBuffer8.hpp libmaus2/aio/OutputBuffer84Bit.hpp libmaus2/aio/TerminatedOutputBuffer84Bit.hpp libmaus2/aio/OutputBuffer.hpp libmaus2/aio/OutputFile8Array.hpp libmaus2/aio/GenericInput.hpp libmaus2/aio/MetaOutputFile8Array.hpp libmaus2/aio/SynchronousOutputFile8Array.hpp libmaus2/aio/MetaOutputBuffer8.hpp libmaus2/aio/SynchronousOutputBuffer8.hpp libmaus2/aio/BlockSynchronousOutputBuffer8.hpp libmaus2/aio/GenericOutput.hpp libmaus2/aio/MemInBuffer.hpp libmaus2/aio/MemOutBuffer.hpp libmaus2/aio/BufferedOutput.hpp libmaus2/aio/FileFragment.hpp libmaus2/aio/AsynchronousFastReaderBase.hpp libmaus2/aio/SynchronousFastReaderBase.hpp libmaus2/aio/LimitedGenericInput.hpp libmaus2/aio/SynchronousGenericInput.hpp libmaus2/aio/LimitedSynchronousGenericInput.hpp libmaus2/aio/ReorderConcatGenericInput.hpp libmaus2/aio/GetLength.hpp libmaus2/aio/CompactDecoder4.hpp libmaus2/aio/CompactEncoder4.hpp libmaus2/aio/WriteCompactArray.hpp libmaus2/aio/SynchronousGenericOutput.hpp libmaus2/aio/SynchronousOutputBuffer8Posix.hpp libmaus2/aio/SynchronousGenericOutputPosix.hpp libmaus2/aio/PutOutputIterator.hpp libmaus2/aio/CheckedInputStream.hpp libmaus2/aio/CheckedOutputStream.hpp libmaus2/aio/CircularBuffer.hpp libmaus2/aio/CircularWrapper.hpp libmaus2/aio/IStreamWrapper.hpp libmaus2/aio/CheckedInputStreamAtOffset.hpp libmaus2/aio/Buffer.hpp '/<>/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/SingleFileFragmentMerge.hpp libmaus2/aio/CheckedInputOutputStream.hpp libmaus2/aio/PosixFdInput.hpp libmaus2/aio/PosixFdInputWrapper.hpp libmaus2/aio/PosixFdInputStream.hpp libmaus2/aio/PosixFdOutputStreamBuffer.hpp libmaus2/aio/PosixFdOutputStream.hpp libmaus2/aio/PosixFdInputStreamBuffer.hpp libmaus2/aio/LinuxStreamingPosixFdOutputStreamBuffer.hpp libmaus2/aio/LinuxStreamingPosixFdOutputStream.hpp libmaus2/aio/IsKnownLocalFileSystem.hpp libmaus2/aio/LineSplittingPosixFdOutputStreamBuffer.hpp libmaus2/aio/LineSplittingPosixFdOutputStream.hpp libmaus2/aio/NamedTemporaryFile.hpp libmaus2/aio/NamedTemporaryFileTypeInfo.hpp libmaus2/aio/NamedTemporaryFileAllocator.hpp libmaus2/aio/InputStreamWrapper.hpp libmaus2/aio/InputStream.hpp libmaus2/aio/InputStreamFactory.hpp libmaus2/aio/PosixFdInputStreamFactory.hpp libmaus2/aio/InputStreamFactoryContainer.hpp libmaus2/aio/OutputStreamWrapper.hpp libmaus2/aio/OutputStream.hpp libmaus2/aio/OutputStreamFactory.hpp libmaus2/aio/OutputStreamFactoryContainer.hpp libmaus2/aio/PosixFdOutputStreamFactory.hpp libmaus2/aio/InputOutputStreamFactoryContainer.hpp libmaus2/aio/InputOutputStreamFactory.hpp libmaus2/aio/InputOutputStream.hpp libmaus2/aio/StdInputOutputStreamFactory.hpp libmaus2/aio/InputOutputStreamWrapper.hpp libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp libmaus2/aio/PosixFdInputOutputStream.hpp libmaus2/aio/PosixFdInputOutputStreamFactory.hpp libmaus2/aio/MemoryFileAdapter.hpp libmaus2/aio/MemoryFileContainer.hpp libmaus2/aio/MemoryFile.hpp libmaus2/aio/MemoryInputOutputStreamBuffer.hpp libmaus2/aio/MemoryInputOutputStreamFactory.hpp libmaus2/aio/MemoryInputOutputStream.hpp '/<>/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/MemoryInputStreamBuffer.hpp libmaus2/aio/MemoryInputStreamFactory.hpp libmaus2/aio/MemoryInputStream.hpp libmaus2/aio/MemoryOutputStreamBuffer.hpp libmaus2/aio/MemoryOutputStreamFactory.hpp libmaus2/aio/MemoryOutputStream.hpp libmaus2/aio/FileRemoval.hpp libmaus2/aio/InputStreamPointerWrapper.hpp libmaus2/aio/InputStreamInstance.hpp libmaus2/aio/InputStreamInstanceAtOffset.hpp libmaus2/aio/OutputStreamPointerWrapper.hpp libmaus2/aio/OutputStreamInstance.hpp libmaus2/aio/ConcatInputStreamBuffer.hpp libmaus2/aio/ConcatInputStream.hpp libmaus2/aio/SplitWriter.hpp libmaus2/aio/ArrayInputStreamBuffer.hpp libmaus2/aio/ArrayInputStream.hpp libmaus2/aio/ArrayFile.hpp libmaus2/aio/ArrayFileSet.hpp libmaus2/aio/StreamLock.hpp libmaus2/aio/ArrayFileContainer.hpp libmaus2/aio/ArrayInputStreamFactory.hpp libmaus2/aio/PairFileDecoder.hpp libmaus2/aio/SizeMonitorThread.hpp libmaus2/aio/DebugLineOutputStreamBuffer.hpp libmaus2/aio/DebugLineOutputStream.hpp libmaus2/aio/TempFileArray.hpp libmaus2/aio/SerialisedPeeker.hpp libmaus2/aio/InputOutputStreamPointerWrapper.hpp libmaus2/aio/InputOutputStreamInstance.hpp '/<>/debian/tmp/usr/include/libmaus2/aio' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/alignment' libtool: install: /usr/bin/install -c .libs/libmaus2.so.2.0.381 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 /usr/bin/install -c -m 644 libmaus2/alignment/KmerTuple.hpp libmaus2/alignment/FactorMatchInfo.hpp libmaus2/alignment/KmerInfo.hpp libmaus2/alignment/FactorMatchInfoPosComparator.hpp libmaus2/alignment/FMIIntervalComparator.hpp libmaus2/alignment/BamLineInfo.hpp libmaus2/alignment/SimpleLocalAligner.hpp '/<>/debian/tmp/usr/include/libmaus2/alignment' libtool: install: /usr/bin/install -c .libs/libmaus2_scram_mod.so /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.381/libmaus2_scram_mod.so /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/autoarray/' libtool: install: /usr/bin/install -c .libs/libmaus2_scram_mod.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.381/libmaus2_scram_mod.la /usr/bin/install -c -m 644 libmaus2/autoarray/AutoArray.hpp libmaus2/autoarray/AutoArray2d.hpp libmaus2/autoarray/AutoArrayMultiMap.hpp libmaus2/autoarray/GenericAlignedAllocation.hpp '/<>/debian/tmp/usr/include/libmaus2/autoarray/' libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu/libmaus2/2.0.381' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/DecoderBase.hpp libmaus2/bambam/Chromosome.hpp libmaus2/bambam/BamAlignmentDecoderBase.hpp libmaus2/bambam/BamFormatAuxiliary.hpp libmaus2/bambam/EncoderBase.hpp libmaus2/bambam/BamHeader.hpp libmaus2/bambam/BamAlignment.hpp libmaus2/bambam/BamDecoder.hpp libmaus2/bambam/BamAlignmentComparator.hpp libmaus2/bambam/MergeQueueElement.hpp libmaus2/bambam/CollatingBamDecoder.hpp libmaus2/bambam/CigarOperation.hpp libmaus2/bambam/CigarStringParser.hpp libmaus2/bambam/BamSeqEncodeTable.hpp libmaus2/bambam/BamAlignmentEncoderBase.hpp libmaus2/bambam/BamFlagBase.hpp libmaus2/bambam/BamWriter.hpp libmaus2/bambam/HeaderLine.hpp libmaus2/bambam/ProgramHeaderLineSet.hpp libmaus2/bambam/ReadEnds.hpp libmaus2/bambam/ReadEndsHeapPairComparator.hpp libmaus2/bambam/CompactReadEndsBase.hpp libmaus2/bambam/CompactReadEndsComparator.hpp libmaus2/bambam/SortedFragDecoder.hpp libmaus2/bambam/ReadEndsContainer.hpp libmaus2/bambam/DuplicationMetrics.hpp libmaus2/bambam/OpticalComparator.hpp libmaus2/bambam/BamAlignmentHeapComparator.hpp libmaus2/bambam/BamAlignmentNameComparator.hpp libmaus2/bambam/BamAlignmentPosComparator.hpp libmaus2/bambam/BamEntryContainer.hpp libmaus2/bambam/Scram.h libmaus2/bambam/AlignmentValidity.hpp libmaus2/bambam/ScramDecoder.hpp libmaus2/bambam/ScramEncoder.hpp libmaus2/bambam/SnappyAlignmentMergeInput.hpp libmaus2/bambam/BamAlignmentPrinter.hpp libmaus2/bambam/BamAlignmentSortingCircularHashEntryOverflow.hpp libmaus2/bambam/CircularHashCollatingBamDecoder.hpp libmaus2/bambam/BamToFastqOutputFileSet.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/BamAlignmentDecoder.hpp libmaus2/bambam/CollatingBamDecoderAlignmentInputCallback.hpp libmaus2/bambam/ReadGroup.hpp libmaus2/bambam/BamAuxFilterVector.hpp libmaus2/bambam/BamDefaultAdapters.hpp libmaus2/bambam/AdapterOffsetStrand.hpp libmaus2/bambam/AdapterFilter.hpp libmaus2/bambam/BamIndexBin.hpp libmaus2/bambam/BamIndexLinear.hpp libmaus2/bambam/BamIndexRef.hpp libmaus2/bambam/BamIndex.hpp libmaus2/bambam/BamRange.hpp libmaus2/bambam/BamRangeParser.hpp libmaus2/bambam/BamRangeDecoder.hpp libmaus2/bambam/BamParallelRewrite.hpp libmaus2/bambam/BamAlignmentExpungeCallback.hpp libmaus2/bambam/StrCmpNum.hpp libmaus2/bambam/BamCatHeader.hpp libmaus2/bambam/BamCat.hpp libmaus2/bambam/BamMergeCoordinate.hpp libmaus2/bambam/BamMergeTemplate.hpp libmaus2/bambam/BamMergeQueryName.hpp libmaus2/bambam/BamIndexBinChunk.hpp libmaus2/bambam/BamIndexLinearChunk.hpp libmaus2/bambam/BamIndexGenerator.hpp libmaus2/bambam/BgzfDeflateOutputCallbackBamIndex.hpp libmaus2/bambam/BamAlignmentInputCallbackBam.hpp libmaus2/bambam/BamAlignmentInputCallbackSnappy.hpp libmaus2/bambam/BamHeaderUpdate.hpp libmaus2/bambam/DupSetCallback.hpp libmaus2/bambam/DupSetCallbackSet.hpp libmaus2/bambam/DupSetCallbackStream.hpp libmaus2/bambam/DupSetCallbackVector.hpp libmaus2/bambam/BamAlignmentListNode.hpp libmaus2/bambam/BamAlignmentPairListNode.hpp libmaus2/bambam/ReadEndsListNode.hpp libmaus2/bambam/BamAlignmentFreeList.hpp libmaus2/bambam/BamAlignmentPairFreeList.hpp libmaus2/bambam/ReadEndsFreeList.hpp libmaus2/bambam/DupMarkBase.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/BamAlignmentSnappyInput.hpp libmaus2/bambam/BamAlignmentInputPositionUpdateCallback.hpp libmaus2/bambam/BamAlignmentInputPositionCallbackNull.hpp libmaus2/bambam/BamBlockWriterBase.hpp libmaus2/bambam/BamBlockWriterBaseFactory.hpp libmaus2/bambam/BamAlignmentDecoderInfo.hpp libmaus2/bambam/BamAlignmentDecoderFactory.hpp libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp libmaus2/bambam/BamIndexMetaInfo.hpp libmaus2/bambam/MdStringComputationContext.hpp libmaus2/bambam/BamAlignmentFilter.hpp libmaus2/bambam/BamAlignmentReadGroupFilter.hpp libmaus2/bambam/MdNmRecalculation.hpp libmaus2/bambam/CramRange.hpp libmaus2/bambam/ChromosomeVectorMerge.hpp libmaus2/bambam/BamHeaderLowMem.hpp libmaus2/bambam/GeneFlatFile.hpp libmaus2/bambam/GeneFlatFileEntry.hpp libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp libmaus2/bambam/BamStreamingMarkDuplicates.hpp libmaus2/bambam/BamHeaderParserStateBase.hpp libmaus2/bambam/BamHeaderParserState.hpp libmaus2/bambam/BamAlignmentReg2Bin.hpp libmaus2/bambam/SamInfoBase.hpp libmaus2/bambam/SamInfo.hpp libmaus2/bambam/SamPrintableTable.hpp libmaus2/bambam/SamZPrintableTable.hpp libmaus2/bambam/SamDecoder.hpp libmaus2/bambam/SamDecoderWrapper.hpp libmaus2/bambam/BamAlignmentFixedSizeData.hpp libmaus2/bambam/BamAuxSortingBufferEntry.hpp libmaus2/bambam/BamAuxSortingBuffer.hpp libmaus2/bambam/ReadEndsContainerBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp libmaus2/bambam/ReadEndsStreamDecoderBase.hpp libmaus2/bambam/ReadEndsStreamDecoderFileBase.hpp libmaus2/bambam/ReadEndsStreamDecoder.hpp libmaus2/bambam/ReadEndsBasePointerComparator.hpp libmaus2/bambam/ReadEndsBase.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/ReadEndsBaseLongHashAttributeComparator.hpp libmaus2/bambam/ReadEndsBaseShortHashAttributeComparator.hpp libmaus2/bambam/ScramInputContainer.hpp libmaus2/bambam/SamEncoder.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfoBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfo.hpp libmaus2/bambam/ReadEndsBlockIndexSet.hpp libmaus2/bambam/DupSetCallbackSharedVector.hpp libmaus2/bambam/SamInfoAllocator.hpp libmaus2/bambam/SamInfoTypeInfo.hpp libmaus2/bambam/RgInfo.hpp libmaus2/bambam/SeqChksumPrimeNumbers.hpp libmaus2/bambam/SeqChksumUpdateContext.hpp libmaus2/bambam/ChecksumsInterface.hpp libmaus2/bambam/ChecksumsFactory.hpp libmaus2/bambam/ChecksumsInterfaceAllocator.hpp libmaus2/bambam/ChecksumsInterfaceTypeInfo.hpp libmaus2/bambam/StrCmpNumRecode.hpp libmaus2/bambam/PileVectorElement.hpp libmaus2/bambam/CigarStringReader.hpp libmaus2/bambam/BamAlignmentHashComparator.hpp libmaus2/bambam/CigarRunLengthDecoder.hpp libmaus2/bambam/CigarDecoder.hpp libmaus2/bambam/BamNumericalIndexGenerator.hpp libmaus2/bambam/BamNumericalIndexDecoder.hpp libmaus2/bambam/BamNumericalIndexBase.hpp libmaus2/bambam/BamPeeker.hpp libmaus2/bambam/OptName.hpp libmaus2/bambam/OptNameReader.hpp libmaus2/bambam/BamAccessor.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' ( cd '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' && ranlib libmaus2digests.a ) /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/bitbtree' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/AddPendingCompressBufferWriteInterface.hpp libmaus2/bambam/parallel/AddWritePendingBgzfBlockInterface.hpp libmaus2/bambam/parallel/AlignmentBlockCompressPackage.hpp libmaus2/bambam/parallel/AlignmentBlockCompressPackageReturnInterface.hpp libmaus2/bambam/parallel/AlignmentBufferAllocator.hpp libmaus2/bambam/parallel/AlignmentBufferHeapComparator.hpp libmaus2/bambam/parallel/AlignmentBuffer.hpp libmaus2/bambam/parallel/AlignmentBufferReinsertInterface.hpp libmaus2/bambam/parallel/AlignmentBufferReturnInterface.hpp libmaus2/bambam/parallel/AlignmentBufferTypeInfo.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferAddPendingInterface.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferAllocator.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferCoordinateComparator.hpp libmaus2/bambam/parallel/AlignmentRewriteBuffer.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferPosComparator.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferReinsertForFillingInterface.hpp libmaus2/bambam/parallel/AlignmentRewritePosMergeSortPackage.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortBaseSortPackage.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContextBaseBlockSortedInterface.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContext.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContextMergePackageFinished.hpp libmaus2/bambam/parallel/BaseMergeSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BaseSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BaseSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BgzfInflateZStreamBaseGetInterface.hpp libmaus2/bambam/parallel/BgzfInflateZStreamBaseReturnInterface.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackage.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BgzfOutputBlockWrittenInterface.hpp libmaus2/bambam/parallel/BlockCompressPackageDispatcher.hpp libmaus2/bambam/parallel/CompressBufferAllocator.hpp libmaus2/bambam/parallel/CompressBufferHeapComparator.hpp libmaus2/bambam/parallel/CompressBuffer.hpp libmaus2/bambam/parallel/CompressionPendingElement.hpp libmaus2/bambam/parallel/ControlInputInfo.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackageDispatcher.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackage.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/DecompressBlockWorkPackageDispatcher.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bitbtree/bitbtree.hpp '/<>/debian/tmp/usr/include/libmaus2/bitbtree' libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2.so.2.0.381 libmaus2.so.2 || { rm -f libmaus2.so.2 && ln -s libmaus2.so.2.0.381 libmaus2.so.2; }; }) ( cd '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' && ranlib libmaus2digests_sse4.a ) /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/bitio' libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2.so.2.0.381 libmaus2.so || { rm -f libmaus2.so && ln -s libmaus2.so.2.0.381 libmaus2.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.la /usr/bin/install -c -m 644 libmaus2/bambam/parallel/DecompressBlockWorkPackage.hpp libmaus2/bambam/parallel/DecompressBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/DecompressedBlockAddPendingInterface.hpp libmaus2/bambam/parallel/DecompressedBlockAllocator.hpp libmaus2/bambam/parallel/DecompressedBlock.hpp libmaus2/bambam/parallel/DecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/DecompressedBlockTypeInfo.hpp libmaus2/bambam/parallel/DecompressedPendingObjectHeapComparator.hpp libmaus2/bambam/parallel/DecompressedPendingObject.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferAllocator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferFragment.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferHeapComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBuffer.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitchHelper.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitch.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteFragmentCompleteInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextBaseBlockSortedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContext.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextMergePackageFinished.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortFinishedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferTypeInfo.hpp libmaus2/bambam/parallel/GetBgzfDeflateZStreamBaseInterface.hpp libmaus2/bambam/parallel/InputBlockAddPendingInterface.hpp libmaus2/bambam/parallel/InputBlockAllocator.hpp libmaus2/bambam/parallel/InputBlock.hpp libmaus2/bambam/parallel/InputBlockReturnInterface.hpp libmaus2/bambam/parallel/InputBlockTypeInfo.hpp libmaus2/bambam/parallel/InputBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/InputBlockWorkPackage.hpp libmaus2/bambam/parallel/InputBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/MergeSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ParseBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ParseBlockWorkPackage.hpp libmaus2/bambam/parallel/ParsedBlockAddPendingInterface.hpp libmaus2/bambam/parallel/ParsedBlockStallInterface.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.so.2.0.381 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2_simd_align_128.so.2.0.381 libmaus2_simd_align_128.so.2 || { rm -f libmaus2_simd_align_128.so.2 && ln -s libmaus2_simd_align_128.so.2.0.381 libmaus2_simd_align_128.so.2; }; }) /usr/bin/install -c -m 644 libmaus2/bitio/BitIO.hpp libmaus2/bitio/BitIOOutput.hpp libmaus2/bitio/CompactArray.hpp libmaus2/bitio/CompactArrayBase.hpp libmaus2/bitio/OutputBuffer.hpp libmaus2/bitio/BitIOInput.hpp libmaus2/bitio/getBits.hpp libmaus2/bitio/ReverseTable.hpp libmaus2/bitio/CompactQueue.hpp libmaus2/bitio/putBits.hpp libmaus2/bitio/SwapWordBitBlock.hpp libmaus2/bitio/swapBitBlocksByReversal.hpp libmaus2/bitio/putBit.hpp libmaus2/bitio/getBit.hpp libmaus2/bitio/readElias.hpp libmaus2/bitio/BitWriter.hpp libmaus2/bitio/CheckedBitWriter.hpp libmaus2/bitio/FastWriteBitWriter.hpp libmaus2/bitio/BitVector.hpp libmaus2/bitio/SignedCompactArray.hpp libmaus2/bitio/BufferIterator.hpp libmaus2/bitio/BitVectorConcat.hpp libmaus2/bitio/CompactSparseArray.hpp libmaus2/bitio/CompactOffsetArray.hpp libmaus2/bitio/CompactOffsetOneArray.hpp libmaus2/bitio/ArrayDecode.hpp libmaus2/bitio/BitStreamFileDecoder.hpp libmaus2/bitio/Clz.hpp libmaus2/bitio/CompactDecoderBuffer.hpp libmaus2/bitio/Ctz.hpp libmaus2/bitio/CompactArrayWriter.hpp libmaus2/bitio/CompactArrayWriterFile.hpp libmaus2/bitio/PacDecoderBuffer.hpp libmaus2/bitio/MarkerFastWriteBitWriter.hpp libmaus2/bitio/BitVectorInput.hpp libmaus2/bitio/BitVectorOutput.hpp '/<>/debian/tmp/usr/include/libmaus2/bitio' libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2_simd_align_128.so.2.0.381 libmaus2_simd_align_128.so || { rm -f libmaus2_simd_align_128.so && ln -s libmaus2_simd_align_128.so.2.0.381 libmaus2_simd_align_128.so; }; }) ( cd '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' && ranlib libmaus2_irods.a ) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.la /usr/bin/install -c -m 644 libmaus2/bambam/parallel/ParseInfoHeaderCompleteCallback.hpp libmaus2/bambam/parallel/ParseInfo.hpp libmaus2/bambam/parallel/ParsePackageReturnInterface.hpp libmaus2/bambam/parallel/PushBackSpace.hpp libmaus2/bambam/parallel/PutBgzfDeflateZStreamBaseInterface.hpp libmaus2/bambam/parallel/RequeReadInterface.hpp libmaus2/bambam/parallel/ReturnBgzfOutputBufferInterface.hpp libmaus2/bambam/parallel/ReturnCompressionPendingElementInterface.hpp libmaus2/bambam/parallel/ReturnRewriteBufferInterface.hpp libmaus2/bambam/parallel/RewriteBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/RewriteBlockWorkPackage.hpp libmaus2/bambam/parallel/RewritePackageReturnInterface.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectFinishedInterface.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectHeapComparator.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObject.hpp libmaus2/bambam/parallel/SortControl.hpp libmaus2/bambam/parallel/SortFinishedInterface.hpp libmaus2/bambam/parallel/ValidateBlockAddPendingInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentAddPendingInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentPackageReturnInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackage.hpp libmaus2/bambam/parallel/ValidateBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ValidateBlockWorkPackage.hpp libmaus2/bambam/parallel/ValidatePackageReturnInterface.hpp libmaus2/bambam/parallel/ValidationFragment.hpp libmaus2/bambam/parallel/WriteBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/WriteBlockWorkPackage.hpp libmaus2/bambam/parallel/WriteBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/WritePendingObjectHeapComparator.hpp libmaus2/bambam/parallel/WritePendingObject.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferNameComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackage.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.so.2.0.381 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/bp' libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2_simd_align_256.so.2.0.381 libmaus2_simd_align_256.so.2 || { rm -f libmaus2_simd_align_256.so.2 && ln -s libmaus2_simd_align_256.so.2.0.381 libmaus2_simd_align_256.so.2; }; }) ( cd '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' && ranlib libmaus2seqchksumsfactory.a ) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2_simd_align_256.so.2.0.381 libmaus2_simd_align_256.so || { rm -f libmaus2_simd_align_256.so && ln -s libmaus2_simd_align_256.so.2.0.381 libmaus2_simd_align_256.so; }; }) /usr/bin/install -c -m 644 libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/ReadEndsContainerAllocator.hpp libmaus2/bambam/parallel/ReadEndsContainerTypeInfo.hpp libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp libmaus2/bambam/parallel/AddDuplicationMetricsInterface.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushFinishedInterface.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushFinishedInterface.hpp libmaus2/bambam/parallel/ReadEndsMergeRequest.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackage.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/MemInputBlock.hpp libmaus2/bambam/parallel/GenericInputBamParseObject.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageBlockParsedInterface.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackage.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBase.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackage.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageMemInputBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkSubBlockDecompressionFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputBlock.hpp libmaus2/bambam/parallel/GenericInputControlMergeBlockFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlMergeHeapEntry.hpp libmaus2/bambam/parallel/GenericInputControlMergeRequeue.hpp libmaus2/bambam/parallel/GenericInputControlReadAddPendingInterface.hpp libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.la libtool: install: /usr/bin/install -c .libs/libmaus2.a /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.a /usr/bin/install -c -m 644 libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlSetMergeStallSlotInterface.hpp libmaus2/bambam/parallel/GenericInputControlStreamInfo.hpp libmaus2/bambam/parallel/GenericInputControlSubBlockPendingHeapComparator.hpp libmaus2/bambam/parallel/GenericInputControlSubBlockPending.hpp libmaus2/bambam/parallel/GenericInputHeapComparator.hpp libmaus2/bambam/parallel/GenericInputMergeDecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackage.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputMergeWorkRequest.hpp libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp libmaus2/bambam/parallel/GenericInputSingleData.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlCompressionPending.hpp libmaus2/bambam/parallel/GenericInputControlCompressionPendingHeapComparator.hpp libmaus2/bambam/parallel/GenericInputControlGetCompressorInterface.hpp libmaus2/bambam/parallel/GenericInputControlPutCompressorInterface.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageBlockWrittenInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackage.hpp libmaus2/bambam/parallel/GenericInputBlockSubBlockInfo.hpp libmaus2/bambam/parallel/GenericInputBlockFillResult.hpp libmaus2/bambam/parallel/GenericInputBlockTypeInfo.hpp libmaus2/bambam/parallel/GenericInputBlockAllocator.hpp libmaus2/bambam/parallel/DecompressedBlockHeapComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageReturnInterface.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bp/BalancedParenthesesBase.hpp libmaus2/bp/BalancedParentheses.hpp '/<>/debian/tmp/usr/include/libmaus2/bp' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/btree' /usr/bin/install -c -m 644 libmaus2/btree/btree.hpp '/<>/debian/tmp/usr/include/libmaus2/btree' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/FragmentAlignmentBufferPosComparator.hpp libmaus2/bambam/parallel/SamParsePending.hpp libmaus2/bambam/parallel/SamParsePendingHeapComparator.hpp libmaus2/bambam/parallel/SamParseWorkPackage.hpp libmaus2/bambam/parallel/BlockSortControlBase.hpp libmaus2/bambam/parallel/SamParsePutSamInfoInterface.hpp libmaus2/bambam/parallel/SamParseGetSamInfoInterface.hpp libmaus2/bambam/parallel/SamParseFragmentParsedInterface.hpp libmaus2/bambam/parallel/SamParseDecompressedBlockFinishedInterface.hpp libmaus2/bambam/parallel/SamParseWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/SamParseWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BlockSortControl.hpp libmaus2/bambam/parallel/BlockMergeControl.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackage.hpp libmaus2/bambam/parallel/FastQInputDescBase.hpp libmaus2/bambam/parallel/FastqToBamControlInputBlockHeapComparator.hpp libmaus2/bambam/parallel/FastqToBamControlSubReadPending.hpp libmaus2/bambam/parallel/FastqToBamControlSubReadPendingHeapComparator.hpp libmaus2/bambam/parallel/DecompressedBlockReorderHeapComparator.hpp libmaus2/bambam/parallel/FastQInputDesc.hpp libmaus2/bambam/parallel/FastqInputPackage.hpp libmaus2/bambam/parallel/FastqInputPackageReturnInterface.hpp libmaus2/bambam/parallel/FastqInputPackageAddPendingInterface.hpp libmaus2/bambam/parallel/FastqInputPackageDispatcher.hpp libmaus2/bambam/parallel/FastqParsePackage.hpp libmaus2/bambam/parallel/FastqParsePackageReturnInterface.hpp libmaus2/bambam/parallel/FastqParsePackageFinishedInterface.hpp libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp libmaus2/bambam/parallel/FastqToBamControl.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageReturnInterface.hpp libmaus2/bambam/parallel/ChecksumsInterfaceGetInterface.hpp libmaus2/bambam/parallel/ChecksumsInterfacePutInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackage.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockFinishedInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BamBlockIndexingWorkPackage.hpp libmaus2/bambam/parallel/BamBlockIndexingWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BamBlockIndexingBlockFinishedInterface.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/clustering' /usr/bin/install -c -m 644 libmaus2/clustering/HashCreation.hpp libmaus2/clustering/HashCreationBase.hpp libmaus2/clustering/ProduceEdgeRequest.hpp libmaus2/clustering/KmerBase.hpp libmaus2/clustering/KMeans.hpp '/<>/debian/tmp/usr/include/libmaus2/clustering' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/BamBlockIndexingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/CramInterface.h libmaus2/bambam/parallel/CramOutputBlock.hpp libmaus2/bambam/parallel/CramOutputBlockSizeComparator.hpp libmaus2/bambam/parallel/SamEncoderObject.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackage.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageReturnInterface.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageFinishedInterface.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageDispatcher.hpp libmaus2/bambam/parallel/CramPassPointerObject.hpp libmaus2/bambam/parallel/CramPassPointerObjectComparator.hpp libmaus2/bambam/parallel/CramPassPointerObjectTypeInfo.hpp libmaus2/bambam/parallel/CramPassPointerObjectAllocator.hpp libmaus2/bambam/parallel/ScramCramEncoding.hpp libmaus2/bambam/parallel/CramOutputBlockIdComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferQueryNameComparator.hpp libmaus2/bambam/parallel/CramEncodingWorkPackage.hpp libmaus2/bambam/parallel/SamEncodingWorkPackage.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageWrapper.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackage.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackageReturnInterface.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumComputedInterface.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackageDispatcher.hpp libmaus2/bambam/parallel/CramEncodingWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageWrapperReturnInterface.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BlockMergeControlTypeBase.hpp libmaus2/bambam/parallel/CramEncodingSupportData.hpp libmaus2/bambam/parallel/CramEncodingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/RefIdInterval.hpp '/<>/debian/tmp/usr/include/libmaus2/bambam/parallel/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/cumfreq' /usr/bin/install -c -m 644 libmaus2/cumfreq/DynamicCumulativeFrequencies.hpp libmaus2/cumfreq/SlowCumFreq.hpp '/<>/debian/tmp/usr/include/libmaus2/cumfreq' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/dazzler/align' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/dazzler/db' /usr/bin/install -c -m 644 libmaus2/dazzler/align/AlignmentFile.hpp libmaus2/dazzler/align/Path.hpp libmaus2/dazzler/align/Overlap.hpp libmaus2/dazzler/align/TraceBlock.hpp libmaus2/dazzler/align/TraceBlockVectorCache.hpp libmaus2/dazzler/align/ApproximateRun.hpp libmaus2/dazzler/align/ApproximateRunPartContainer.hpp libmaus2/dazzler/align/SortingOverlapOutputBuffer.hpp libmaus2/dazzler/align/OverlapHeapComparator.hpp libmaus2/dazzler/align/SortingOverlapBlockInput.hpp libmaus2/dazzler/align/SortingOverlapOutputBufferMerger.hpp libmaus2/dazzler/align/AlignmentSplitWriter.hpp libmaus2/dazzler/align/OverlapMeta.hpp libmaus2/dazzler/align/OverlapIndexerBase.hpp libmaus2/dazzler/align/OverlapIndexer.hpp libmaus2/dazzler/align/AlignmentWriter.hpp libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp libmaus2/dazzler/align/AlignmentFileRegion.hpp libmaus2/dazzler/align/CompactRunPartContainer.hpp libmaus2/dazzler/align/Tandem.hpp libmaus2/dazzler/align/TandemVector.hpp libmaus2/dazzler/align/TandemVectorPartContainer.hpp libmaus2/dazzler/align/TracePoint.hpp libmaus2/dazzler/align/OverlapParser.hpp libmaus2/dazzler/align/OverlapData.hpp libmaus2/dazzler/align/SimpleOverlapParser.hpp libmaus2/dazzler/align/SimpleOverlapVectorParser.hpp libmaus2/dazzler/align/LASToBamConverterBase.hpp libmaus2/dazzler/align/RefMapEntry.hpp libmaus2/dazzler/align/RefMapEntryVector.hpp libmaus2/dazzler/align/TrueOverlapStats.hpp libmaus2/dazzler/align/TrueOverlap.hpp libmaus2/dazzler/align/AlignmentWriterArray.hpp libmaus2/dazzler/align/OverlapProperCheck.hpp libmaus2/dazzler/align/DalignerIndexDecoder.hpp libmaus2/dazzler/align/AlignmentFileDecoder.hpp libmaus2/dazzler/align/OverlapHeader.hpp libmaus2/dazzler/align/GraphDecoderContextAllocator.hpp libmaus2/dazzler/align/GraphDecoderContext.hpp libmaus2/dazzler/align/GraphDecoderContextTypeInfo.hpp '/<>/debian/tmp/usr/include/libmaus2/dazzler/align' /usr/bin/install -c -m 644 libmaus2/dazzler/db/IndexBase.hpp libmaus2/dazzler/db/FastaInfo.hpp libmaus2/dazzler/db/DatabaseFile.hpp libmaus2/dazzler/db/InputBase.hpp libmaus2/dazzler/db/GetByteCounter.hpp libmaus2/dazzler/db/Read.hpp libmaus2/dazzler/db/OutputBase.hpp libmaus2/dazzler/db/TrackAnnoInterface.hpp libmaus2/dazzler/db/TrackAnno.hpp libmaus2/dazzler/db/Track.hpp libmaus2/dazzler/db/InqualContainer.hpp libmaus2/dazzler/db/PartTrackContainer.hpp libmaus2/dazzler/db/ReadLRUContainer.hpp libmaus2/dazzler/db/SatsContainer.hpp libmaus2/dazzler/db/ReadContainer.hpp libmaus2/dazzler/db/StringTrackWriter.hpp '/<>/debian/tmp/usr/include/libmaus2/dazzler/db' /usr/bin/install -c -m 644 libmaus2/dazzler/align/GraphDecoder.hpp libmaus2/dazzler/align/GraphEncoder.hpp libmaus2/dazzler/align/OverlapInfo.hpp libmaus2/dazzler/align/OverlapInfoIndexer.hpp '/<>/debian/tmp/usr/include/libmaus2/dazzler/align' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/dazzler/stringgraph' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/deleter' /usr/bin/install -c -m 644 libmaus2/deleter/Deleter.hpp '/<>/debian/tmp/usr/include/libmaus2/deleter' /usr/bin/install -c -m 644 libmaus2/dazzler/stringgraph/Edge.hpp libmaus2/dazzler/stringgraph/OverlapNode.hpp libmaus2/dazzler/stringgraph/StringGraph.hpp libmaus2/dazzler/stringgraph/ContainmentInfo.hpp libmaus2/dazzler/stringgraph/TraversalElement.hpp '/<>/debian/tmp/usr/include/libmaus2/dazzler/stringgraph' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/digest' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/eta' /usr/bin/install -c -m 644 libmaus2/digest/DigestBase.hpp libmaus2/digest/SHA1.hpp libmaus2/digest/SHA2_224.hpp libmaus2/digest/SHA2_256.hpp libmaus2/digest/SHA2_384.hpp libmaus2/digest/SHA2_512.hpp libmaus2/digest/CRC32.hpp libmaus2/digest/Digests.hpp libmaus2/digest/Null.hpp libmaus2/digest/SHA2_256_sse4.hpp libmaus2/digest/sha256.h libmaus2/digest/sha512.h libmaus2/digest/SHA2_512_sse4.hpp libmaus2/digest/CRC32C_sse42.hpp libmaus2/digest/CRC32C_Core.hpp libmaus2/digest/CRC32C.hpp libmaus2/digest/CRC32_Core.hpp libmaus2/digest/DigestInterface.hpp libmaus2/digest/DigestFactory.hpp libmaus2/digest/DigestFactoryContainer.hpp libmaus2/digest/DigestFactory_SHA2_ASM.hpp libmaus2/digest/DigestFactory_CRC32C_SSE42.hpp libmaus2/digest/DigestFactoryInterface.hpp libmaus2/digest/md5.hpp libmaus2/digest/md5.h libmaus2/digest/MurmurHash3_x64_128.hpp libmaus2/digest/SHA3_256.hpp '/<>/debian/tmp/usr/include/libmaus2/digest' /usr/bin/install -c -m 644 libmaus2/eta/LinearETA.hpp '/<>/debian/tmp/usr/include/libmaus2/eta' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/exception' /usr/bin/install -c -m 644 libmaus2/exception/LibMausException.hpp '/<>/debian/tmp/usr/include/libmaus2/exception' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/fastx' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/fm' /usr/bin/install -c -m 644 libmaus2/fastx/CharTermTable.hpp libmaus2/fastx/SpaceTable.hpp libmaus2/fastx/CharBuffer.hpp libmaus2/fastx/Pattern.hpp libmaus2/fastx/acgtnMap.hpp libmaus2/fastx/FastAReader.hpp libmaus2/fastx/PatternBlock.hpp libmaus2/fastx/FastIDBlock.hpp libmaus2/fastx/FastQReader.hpp libmaus2/fastx/FASTQEntry.hpp libmaus2/fastx/isFastQ.hpp libmaus2/fastx/MultiWordDNABitBuffer.hpp libmaus2/fastx/SingleWordDNABitBuffer.hpp libmaus2/fastx/FastInterval.hpp libmaus2/fastx/FastAReaderSplit.hpp libmaus2/fastx/FastQReaderSplit.hpp libmaus2/fastx/ConcatWriter.hpp libmaus2/fastx/FastFirstToLastReverseAdapter.hpp libmaus2/fastx/FastServer.hpp libmaus2/fastx/FastClient.hpp libmaus2/fastx/CompactFastDecoderBase.hpp libmaus2/fastx/CompactFastDecoder.hpp libmaus2/fastx/CompactFastEncoder.hpp libmaus2/fastx/CompactReadContainer.hpp libmaus2/fastx/SocketFastAReader.hpp libmaus2/fastx/SocketFastQReader.hpp libmaus2/fastx/SubSamplingFastReader.hpp libmaus2/fastx/SlashStrip.hpp libmaus2/fastx/FirstWhiteSpaceSlashStrip.hpp libmaus2/fastx/Phred.hpp libmaus2/fastx/FastQElement.hpp libmaus2/fastx/ComputeFastXIntervals.hpp libmaus2/fastx/FqWeightQuantiser.hpp libmaus2/fastx/CompactFastQHeader.hpp libmaus2/fastx/CompactFastQContext.hpp libmaus2/fastx/CompactFastQDecoderBase.hpp libmaus2/fastx/CompactFastQContainerDictionary.hpp libmaus2/fastx/CompactFastQContainer.hpp libmaus2/fastx/CompactFastQContainerDictionaryCreator.hpp libmaus2/fastx/CompactFastQBlockGenerator.hpp '/<>/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fm/FM.hpp libmaus2/fm/SampledSA.hpp libmaus2/fm/SampledISA.hpp libmaus2/fm/MausFmToBwaConversion.hpp libmaus2/fm/BidirectionalIndexInterval.hpp libmaus2/fm/BidirectionalIndexIntervalSymbol.hpp libmaus2/fm/DictionaryInfo.hpp libmaus2/fm/DictionaryInfoImpCompactHuffmanWaveletTree.hpp libmaus2/fm/BidirectionalDnaIndexTemplate.hpp libmaus2/fm/KmerCache.hpp libmaus2/fm/FA4CompactSampledSuffixArray.hpp '/<>/debian/tmp/usr/include/libmaus2/fm' /usr/bin/install -c -m 644 libmaus2/fastx/CompactFastQSingleBlockReader.hpp libmaus2/fastx/CompactFastQMultiBlockReader.hpp libmaus2/fastx/CompactFastTerminator.hpp libmaus2/fastx/CompactFastReplace.hpp libmaus2/fastx/QReorder.hpp libmaus2/fastx/StreamFastReaderBase.hpp libmaus2/fastx/StreamFastQReader.hpp libmaus2/fastx/GzipStreamFastQReader.hpp libmaus2/fastx/GzipFileFastQReader.hpp libmaus2/fastx/FastQBgzfWriter.hpp libmaus2/fastx/StreamFastAReader.hpp libmaus2/fastx/FastALineParserLineInfo.hpp libmaus2/fastx/FastADefinedBasesTable.hpp libmaus2/fastx/FastAMapTable.hpp libmaus2/fastx/FastAMatchTable.hpp libmaus2/fastx/FastALineParser.hpp libmaus2/fastx/FastAStreamWrapper.hpp libmaus2/fastx/FastAStream.hpp libmaus2/fastx/FastAStreamSet.hpp libmaus2/fastx/BgzfFastAIndexEntry.hpp libmaus2/fastx/BgzfFastAIndexEntryNameComparator.hpp libmaus2/fastx/BgzfFastAIndexEntryIdComparator.hpp libmaus2/fastx/FastABgzfIndexEntry.hpp libmaus2/fastx/FastABgzfIndex.hpp libmaus2/fastx/FastABgzfDecoder.hpp libmaus2/fastx/FastABgzfDecoderBuffer.hpp libmaus2/fastx/FastAIndexEntry.hpp libmaus2/fastx/FastAIndex.hpp libmaus2/fastx/FastAInfo.hpp libmaus2/fastx/FastATwoBitTable.hpp libmaus2/fastx/FastABPConstants.hpp libmaus2/fastx/FastABPGenerator.hpp libmaus2/fastx/FastaBPSequenceDecoder.hpp libmaus2/fastx/FastaBPDecoder.hpp libmaus2/fastx/NameInfoBase.hpp libmaus2/fastx/NameInfo.hpp libmaus2/fastx/RefPathToken.hpp libmaus2/fastx/RefPathTokenVector.hpp libmaus2/fastx/RefPathTokenVectorSequence.hpp libmaus2/fastx/RefPathLookup.hpp '/<>/debian/tmp/usr/include/libmaus2/fastx' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/install -c -m 644 libmaus2/fastx/DNAIndexMetaDataSequence.hpp libmaus2/fastx/DNAIndexMetaData.hpp libmaus2/fastx/DNAIndexMetaDataBigBand.hpp libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.hpp libmaus2/fastx/CoordinateCache.hpp libmaus2/fastx/LineBufferFastAReader.hpp libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp libmaus2/fastx/FastAToCompact4BigBand.hpp libmaus2/fastx/FastAIndexGenerator.hpp libmaus2/fastx/CoordinateCacheBiDir.hpp libmaus2/fastx/KmerFreqInWindowStats.hpp libmaus2/fastx/ReadContainer.hpp libmaus2/fastx/KmerRepeatDetector.hpp libmaus2/fastx/FastaPeeker.hpp libmaus2/fastx/KmerCount.hpp '/<>/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/gamma/GammaEncoder.hpp libmaus2/gamma/GammaDecoder.hpp libmaus2/gamma/GammaGapEncoder.hpp libmaus2/gamma/GammaGapDecoder.hpp libmaus2/gamma/GammaRLDecoder.hpp libmaus2/gamma/GammaRLEncoder.hpp libmaus2/gamma/SparseGammaGapEncoder.hpp libmaus2/gamma/SparseGammaGapDecoder.hpp libmaus2/gamma/SparseGammaGapMerge.hpp libmaus2/gamma/SparseGammaGapFile.hpp libmaus2/gamma/SparseGammaGapMultiFile.hpp libmaus2/gamma/SparseGammaGapFileSet.hpp libmaus2/gamma/SparseGammaGapFileLevelSet.hpp libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.hpp libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp libmaus2/gamma/SparseGammaGapConcatDecoder.hpp libmaus2/gamma/SparseGammaGapMultiFileSet.hpp libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp libmaus2/gamma/SparseGammaGapBlockEncoder.hpp libmaus2/gamma/GammaDifferenceEncoder.hpp libmaus2/gamma/GammaDifferenceDecoder.hpp libmaus2/gamma/GammaDifferenceMerge.hpp libmaus2/gamma/GammaDifferenceOutputBuffer.hpp libmaus2/gamma/GammaEncoderBase.hpp libmaus2/gamma/SimpleGammaEncoderData.hpp libmaus2/gamma/SimpleGammaEncoder.hpp libmaus2/gamma/GammaDecoderBase.hpp libmaus2/gamma/SimpleGammaDecoderData.hpp libmaus2/gamma/SimpleGammaDecoder.hpp libmaus2/gamma/SimpleGammaEncoderArray.hpp libmaus2/gamma/GammaPartitionEncoder.hpp libmaus2/gamma/GammaIntervalEncoder.hpp libmaus2/gamma/GammaPartitionDecoder.hpp libmaus2/gamma/GammaIntervalDecoder.hpp libmaus2/gamma/GammaPDEncoder.hpp libmaus2/gamma/GammaPDDecoder.hpp libmaus2/gamma/GammaPDIndexDecoderBase.hpp libmaus2/gamma/GammaPDIndexDecoder.hpp libmaus2/gamma/Interval.hpp '/<>/debian/tmp/usr/include/libmaus2/gamma/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/geometry' /usr/bin/install -c -m 644 libmaus2/gamma/FlaggedInterval.hpp libmaus2/gamma/GammaFlaggedPartitionDecoder.hpp libmaus2/gamma/GammaFlaggedPartitionEncoder.hpp libmaus2/gamma/GammaFlaggedIntervalDecoder.hpp libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp '/<>/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/install -c -m 644 libmaus2/geometry/RangeSet.hpp libmaus2/geometry/IntervalTree.hpp '/<>/debian/tmp/usr/include/libmaus2/geometry' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/graph' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/hashing' /usr/bin/install -c -m 644 libmaus2/graph/TripleEdge.hpp libmaus2/graph/TripleEdgeInput.hpp libmaus2/graph/TripleEdgeOutput.hpp libmaus2/graph/TripleEdgeOutputMerge.hpp libmaus2/graph/TripleEdgeOperations.hpp libmaus2/graph/TripleEdgeBuffer.hpp libmaus2/graph/TripleEdgeBufferSet.hpp libmaus2/graph/TripleEdgeOutputSet.hpp libmaus2/graph/U64Buffer.hpp libmaus2/graph/TripleIOTest.hpp libmaus2/graph/EdgeList.hpp libmaus2/graph/EdgeBuffer.hpp libmaus2/graph/EdgeListLocalFlush.hpp libmaus2/graph/EdgeListLocalLockedFlush.hpp libmaus2/graph/EdgeListLocked.hpp libmaus2/graph/EdgeBufferLocal.hpp libmaus2/graph/EdgeBufferLocalLocked.hpp libmaus2/graph/EdgeListLockedSet.hpp libmaus2/graph/LocalEdgeSet.hpp libmaus2/graph/TripleEdgeCompact.hpp libmaus2/graph/FilteredGraphTypes.hpp libmaus2/graph/GraphEdge.hpp libmaus2/graph/GraphEdgeBuffer.hpp libmaus2/graph/GraphEdgeBlockBuffer.hpp libmaus2/graph/GraphEdgeHeapComparator.hpp libmaus2/graph/GraphEdgeMerge.hpp libmaus2/graph/StronglyConnectedComponents.hpp libmaus2/graph/IdentityTargetProjector.hpp libmaus2/graph/ReachableVertices.hpp libmaus2/graph/TopologicalSorting.hpp libmaus2/graph/POGraph.hpp '/<>/debian/tmp/usr/include/libmaus2/graph' /usr/bin/install -c -m 644 libmaus2/hashing/hash.hpp libmaus2/hashing/CircularHash.hpp libmaus2/hashing/ConstantStringHash.hpp libmaus2/hashing/Crc32.hpp libmaus2/hashing/MurmurHash3.h '/<>/debian/tmp/usr/include/libmaus2/hashing' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/hdf5' /usr/bin/install -c -m 644 libmaus2/hdf5/HDF5MuteErrorHandler.hpp libmaus2/hdf5/HDF5Handle.hpp '/<>/debian/tmp/usr/include/libmaus2/hdf5' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/huffman' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/index/' /usr/bin/install -c -m 644 libmaus2/index/ExternalMemoryIndexGenerator.hpp libmaus2/index/ExternalMemoryIndexRecord.hpp libmaus2/index/ExternalMemoryIndexDecoder.hpp libmaus2/index/ExternalMemoryIndexDecoderFindLargestSmallerResult.hpp '/<>/debian/tmp/usr/include/libmaus2/index/' /usr/bin/install -c -m 644 libmaus2/huffman/CompressTable.hpp libmaus2/huffman/DecodeTable.hpp libmaus2/huffman/EncodeTable.hpp libmaus2/huffman/hufEncodeString.hpp libmaus2/huffman/HuffmanBase.hpp libmaus2/huffman/huffman.hpp libmaus2/huffman/HuffmanSorting.hpp libmaus2/huffman/HuffmanTreeInnerNode.hpp libmaus2/huffman/HuffmanTreeLeafComparator.hpp libmaus2/huffman/HuffmanTreeLeaf.hpp libmaus2/huffman/HuffmanTreeNode.hpp libmaus2/huffman/CanonicalEncoder.hpp libmaus2/huffman/RLDecoder.hpp libmaus2/huffman/RLEncoder.hpp libmaus2/huffman/HuffmanEncoderFile.hpp libmaus2/huffman/IndexLoader.hpp libmaus2/huffman/GapDecoder.hpp libmaus2/huffman/GapEncoder.hpp libmaus2/huffman/FileStreamBaseType.hpp libmaus2/huffman/BitInputBuffer.hpp libmaus2/huffman/PairAddSecond.hpp libmaus2/huffman/IndexEntry.hpp libmaus2/huffman/IndexLoaderBase.hpp libmaus2/huffman/RLDecoderIndexBase.hpp libmaus2/huffman/GapDecoderIndexBase.hpp libmaus2/huffman/IndexDecoderDataArray.hpp libmaus2/huffman/HuffmanInputFile.hpp libmaus2/huffman/KvInitResult.hpp libmaus2/huffman/HuffmanTree.hpp libmaus2/huffman/SymCountEncoder.hpp libmaus2/huffman/SymCountDecoder.hpp libmaus2/huffman/SymCount.hpp libmaus2/huffman/IndexWriter.hpp libmaus2/huffman/SymCountRun.hpp libmaus2/huffman/RLInitType.hpp libmaus2/huffman/RLRun.hpp libmaus2/huffman/LFInfo.hpp libmaus2/huffman/LFSupportDecoder.hpp libmaus2/huffman/LFSupportEncoder.hpp libmaus2/huffman/LFSupportBitDecoder.hpp '/<>/debian/tmp/usr/include/libmaus2/huffman' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/irods' /usr/bin/install -c -m 644 libmaus2/irods/IRodsFileBase.hpp libmaus2/irods/IRodsSystem.hpp libmaus2/irods/IRodsCommProvider.hpp libmaus2/irods/IRodsInputStreamBuffer.hpp libmaus2/irods/IRodsInputStream.hpp libmaus2/irods/IRodsInputStreamFactory.hpp '/<>/debian/tmp/usr/include/libmaus2/irods' /usr/bin/install -c -m 644 libmaus2/huffman/LFSetBit.hpp libmaus2/huffman/LFSetBitDecoder.hpp libmaus2/huffman/LFSetBitEncoder.hpp libmaus2/huffman/LFValueEncoder.hpp libmaus2/huffman/LFValueDecoder.hpp libmaus2/huffman/LFValue.hpp libmaus2/huffman/LFPhiPairDecoder.hpp libmaus2/huffman/LFPhiPairEncoder.hpp libmaus2/huffman/LFPhiPair.hpp libmaus2/huffman/LFPhiPairLCP.hpp libmaus2/huffman/LFPhiPairLCPDecoder.hpp libmaus2/huffman/LFPhiPairLCPEncoder.hpp libmaus2/huffman/LFRankLCP.hpp libmaus2/huffman/LFRankLCPDecoder.hpp libmaus2/huffman/LFRankLCPEncoder.hpp libmaus2/huffman/SymBit.hpp libmaus2/huffman/SymBitDecoder.hpp libmaus2/huffman/SymBitEncoder.hpp libmaus2/huffman/SymBitRun.hpp libmaus2/huffman/LFRankPos.hpp libmaus2/huffman/LFRankPosEncoder.hpp libmaus2/huffman/LFRankPosDecoder.hpp libmaus2/huffman/LFSymRankPos.hpp libmaus2/huffman/LFSymRankPosDecoder.hpp libmaus2/huffman/LFSymRankPosEncoder.hpp libmaus2/huffman/InputAdapter.hpp libmaus2/huffman/OutputAdapter.hpp '/<>/debian/tmp/usr/include/libmaus2/huffman' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/lcp' /usr/bin/install -c -m 644 libmaus2/lcp/LCP.hpp libmaus2/lcp/OracleLCP.hpp libmaus2/lcp/SuccinctLCP.hpp libmaus2/lcp/WaveletLCPResult.hpp libmaus2/lcp/WaveletLCP.hpp libmaus2/lcp/ComputeSuccinctLCPResult.hpp libmaus2/lcp/PLCPBitDecoder.hpp '/<>/debian/tmp/usr/include/libmaus2/lcp' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/lcs' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/lf' /usr/bin/install -c -m 644 libmaus2/lf/LF.hpp libmaus2/lf/HuffmanLF.hpp libmaus2/lf/LFZero.hpp libmaus2/lf/DArray.hpp libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp libmaus2/lf/LFBase.hpp libmaus2/lf/QuickLF.hpp libmaus2/lf/MultiRankLF.hpp libmaus2/lf/MultiRankCacheLF.hpp libmaus2/lf/ImpCacheLineRankLF.hpp libmaus2/lf/ImpCacheLineRankLFNonZero.hpp libmaus2/lf/ImpHuffmanWaveletLF.hpp libmaus2/lf/ImpWTLF.hpp libmaus2/lf/RLIndexLF.hpp '/<>/debian/tmp/usr/include/libmaus2/lf' /usr/bin/install -c -m 644 libmaus2/lcs/SuffixArrayLCS.hpp libmaus2/lcs/LCSRef.hpp libmaus2/lcs/LCSDynamic.hpp libmaus2/lcs/SuffixPrefix.hpp libmaus2/lcs/OverlapComputation.hpp libmaus2/lcs/LCS.hpp libmaus2/lcs/GenericEditDistance.hpp libmaus2/lcs/EditDistanceResult.hpp libmaus2/lcs/BaseConstants.hpp libmaus2/lcs/PenaltyConstants.hpp libmaus2/lcs/TraceContainer.hpp libmaus2/lcs/GenericAlignmentPrint.hpp libmaus2/lcs/SuffixPrefixResult.hpp libmaus2/lcs/SuffixPrefixAlignmentPrint.hpp libmaus2/lcs/OffsetElement.hpp libmaus2/lcs/HashContainer.hpp libmaus2/lcs/HashContainer2.hpp libmaus2/lcs/DistNodeType.hpp libmaus2/lcs/OverlapComputationBlockRequest.hpp libmaus2/lcs/OverlapOrientation.hpp libmaus2/lcs/OrientationWeightEncoding.hpp libmaus2/lcs/CheckOverlapResult.hpp libmaus2/lcs/CheckOverlapResultIdComparator.hpp libmaus2/lcs/CheckOverlapResultIdHeapComparator.hpp libmaus2/lcs/CheckOverlapResultInput.hpp libmaus2/lcs/CheckOverlapResultInputPushBack.hpp libmaus2/lcs/CheckOverlapResultMergeInput.hpp libmaus2/lcs/CheckOverlapScoreComparatorGreater.hpp libmaus2/lcs/CheckOverlapResultOperations.hpp libmaus2/lcs/HammingOverlapDetection.hpp libmaus2/lcs/AlignmentPrint.hpp libmaus2/lcs/AlignmentTraceContainer.hpp libmaus2/lcs/EditDistance.hpp libmaus2/lcs/BandedEditDistance.hpp libmaus2/lcs/MetaEditDistance.hpp libmaus2/lcs/EditDistanceTraceContainer.hpp libmaus2/lcs/EditDistancePriorityType.hpp libmaus2/lcs/LocalBaseConstants.hpp libmaus2/lcs/LocalPenaltyConstants.hpp libmaus2/lcs/LocalAlignmentTraceContainer.hpp '/<>/debian/tmp/usr/include/libmaus2/lcs' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/lru' /usr/bin/install -c -m 644 libmaus2/lcs/LocalEditDistanceTraceContainer.hpp libmaus2/lcs/LocalAlignmentPrint.hpp libmaus2/lcs/LocalEditDistance.hpp libmaus2/lcs/LocalEditDistanceResult.hpp libmaus2/lcs/MetaLocalEditDistance.hpp libmaus2/lcs/BandedLocalEditDistance.hpp libmaus2/lcs/ND.hpp libmaus2/lcs/NDextend.hpp libmaus2/lcs/AlignmentStatistics.hpp libmaus2/lcs/NDextendAllPass.hpp libmaus2/lcs/NDextendACGTPass.hpp libmaus2/lcs/NDextend1234Pass.hpp libmaus2/lcs/BitVectorResultCallbackInterface.hpp libmaus2/lcs/BitVector.hpp libmaus2/lcs/SimdX86GlobalAlignmentConstants128.hpp libmaus2/lcs/SimdX86GlobalAlignmentConstants256.hpp libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8_undef.hpp libmaus2/lcs/Aligner.hpp libmaus2/lcs/AlignerFactory.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.hpp '/<>/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_undef.hpp libmaus2/lcs/BandedAligner.hpp libmaus2/lcs/BandedAlignerFactory.hpp libmaus2/lcs/NP.hpp libmaus2/lcs/NPL.hpp libmaus2/lcs/NNP.hpp libmaus2/lcs/NNPCor.hpp libmaus2/lcs/NNPTraceElement.hpp libmaus2/lcs/NNPTraceContainer.hpp libmaus2/lcs/NNPAlignResult.hpp libmaus2/lcs/DalignerNP.hpp libmaus2/lcs/DalignerLocalAlignment.hpp libmaus2/lcs/FragmentEnvelopeYScore.hpp libmaus2/lcs/FragmentEnvelopeFragment.hpp libmaus2/lcs/FragmentEnvelope.hpp libmaus2/lcs/EnvelopeFragment.hpp libmaus2/lcs/ScoreBandedAligner.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreTemplate.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentScoreConstants256.hpp libmaus2/lcs/NNPLocalAligner.hpp libmaus2/lcs/ChainAddQueueElementHeapComparator.hpp libmaus2/lcs/ChainNode.hpp libmaus2/lcs/ChainRemoveQueueElement.hpp libmaus2/lcs/ChainAddQueueElement.hpp libmaus2/lcs/ChainNodeInfo.hpp libmaus2/lcs/ChainSplayTreeNodeComparator.hpp libmaus2/lcs/ChainAlignment.hpp libmaus2/lcs/ChainNodeInfoSet.hpp libmaus2/lcs/ChainSplayTreeNode.hpp libmaus2/lcs/Chain.hpp libmaus2/lcs/ChainRemoveQueueElementComparator.hpp libmaus2/lcs/ChainLeftMostComparator.hpp libmaus2/lcs/SMEMProcessor.hpp libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp '/<>/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lru/LRU.hpp libmaus2/lru/SparseLRU.hpp libmaus2/lru/SparseLRUFileBunch.hpp libmaus2/lru/FileBunchLRU.hpp '/<>/debian/tmp/usr/include/libmaus2/lru' /usr/bin/install -c -m 644 libmaus2/lcs/AlignmentOneAgainstManyInterface.hpp libmaus2/lcs/AlignmentOneAgainstManyGeneric.hpp libmaus2/lcs/AlignmentOneAgainstManyFactory.hpp '/<>/debian/tmp/usr/include/libmaus2/lcs' ( cd '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' && ranlib libmaus2fftw.a ) libtool: install: chmod 644 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.a libtool: install: ranlib /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.a /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/lz/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/math' /usr/bin/install -c -m 644 libmaus2/math/isqrt.hpp libmaus2/math/bitsPerNum.hpp libmaus2/math/MetaLog.hpp libmaus2/math/lowbits.hpp libmaus2/math/numbits.hpp libmaus2/math/gcd.hpp libmaus2/math/binom.hpp libmaus2/math/primes16.hpp libmaus2/math/ilog.hpp libmaus2/math/DoubleCode.hpp libmaus2/math/iabs.hpp libmaus2/math/IPower.hpp libmaus2/math/Log.hpp libmaus2/math/ipow.hpp libmaus2/math/IntegerInterval.hpp libmaus2/math/DecimalNumberParser.hpp libmaus2/math/UnsignedInteger.hpp libmaus2/math/Rational.hpp libmaus2/math/BernoulliNumber.hpp libmaus2/math/Faulhaber.hpp libmaus2/math/RepetetiveKmerFreqEstimate.hpp libmaus2/math/GmpInteger.hpp libmaus2/math/GmpFloat.hpp libmaus2/math/Convolution.hpp libmaus2/math/GeneralisedBernoulli.hpp libmaus2/math/GeneralisedClusterBernoulli.hpp libmaus2/math/ClusteredBernoulli.hpp libmaus2/math/RationalPolynomialSupport.hpp libmaus2/math/ConstantSumCombinatorics.hpp '/<>/debian/tmp/usr/include/libmaus2/math' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/network' /usr/bin/install -c -m 644 libmaus2/lz/Inflate.hpp libmaus2/lz/Deflate.hpp libmaus2/lz/GzipHeader.hpp libmaus2/lz/StreamWrapper.hpp libmaus2/lz/GzipSingleStream.hpp libmaus2/lz/GzipStream.hpp libmaus2/lz/GzipStreamWrapper.hpp libmaus2/lz/BufferedGzipStream.hpp libmaus2/lz/StdOstreamSink.hpp libmaus2/lz/IstreamSource.hpp libmaus2/lz/SnappyCompress.hpp libmaus2/lz/BgzfInflate.hpp libmaus2/lz/BgzfInflateWrapper.hpp libmaus2/lz/BgzfInflateStream.hpp libmaus2/lz/BgzfDeflate.hpp libmaus2/lz/BgzfInflateBase.hpp libmaus2/lz/BgzfInflateBlock.hpp libmaus2/lz/BgzfInflateParallel.hpp libmaus2/lz/BgzfInflateParallelWrapper.hpp libmaus2/lz/BgzfInflateParallelStream.hpp libmaus2/lz/BgzfDeflateBase.hpp libmaus2/lz/BgzfInflateBlockIdComparator.hpp libmaus2/lz/BgzfInflateBlockIdInfo.hpp libmaus2/lz/BgzfInflateParallelContext.hpp libmaus2/lz/BgzfInflateParallelThread.hpp libmaus2/lz/BgzfDeflateBlockIdInfo.hpp libmaus2/lz/BgzfDeflateBlockIdComparator.hpp libmaus2/lz/BgzfDeflateParallelContext.hpp libmaus2/lz/BgzfDeflateParallelThread.hpp libmaus2/lz/BgzfConstants.hpp libmaus2/lz/BgzfDeflateHeaderFunctions.hpp libmaus2/lz/BgzfDeflateInputBufferBase.hpp libmaus2/lz/BgzfDeflateOutputBufferBase.hpp libmaus2/lz/BgzfDeflateZStreamBase.hpp libmaus2/lz/BgzfInflateHeaderBase.hpp libmaus2/lz/BgzfInflateZStreamBase.hpp libmaus2/lz/BgzfRecode.hpp libmaus2/lz/BgzfThreadOpBase.hpp libmaus2/lz/BgzfInflateDeflateParallel.hpp libmaus2/lz/BgzfInflateDeflateParallelThread.hpp '/<>/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/network/Socket.hpp libmaus2/network/GetHostName.hpp libmaus2/network/SocketFastReaderBase.hpp libmaus2/network/Interface.hpp libmaus2/network/GetDottedAddress.hpp libmaus2/network/UDPSocket.hpp libmaus2/network/GenericServer.hpp libmaus2/network/SocketOutputBuffer8.hpp libmaus2/network/SocketOutputBuffer8Set.hpp libmaus2/network/sendReceiveFd.h libmaus2/network/SocketPair.hpp libmaus2/network/FileDescriptorPasser.hpp libmaus2/network/SocketInputStreamBuffer.hpp libmaus2/network/SocketInputStream.hpp libmaus2/network/HttpAbsoluteUrl.hpp libmaus2/network/SocketInputOutputInterface.hpp libmaus2/network/FtpUrl.hpp libmaus2/network/HttpBody.hpp libmaus2/network/HttpHeader.hpp libmaus2/network/FtpSocket.hpp libmaus2/network/UrlBase.hpp libmaus2/network/HttpHeaderWrapper.hpp libmaus2/network/HttpBodyWrapper.hpp libmaus2/network/FtpSocketWrapper.hpp libmaus2/network/HttpSocketInputStreamBuffer.hpp libmaus2/network/HttpSocketInputStream.hpp libmaus2/network/FtpSocketInputStreamBuffer.hpp libmaus2/network/FtpSocketInputStream.hpp libmaus2/network/FileUrl.hpp libmaus2/network/UrlInputStreamBufferWrapper.hpp libmaus2/network/UrlInputStream.hpp libmaus2/network/GnuTLSInit.hpp libmaus2/network/GnuTLSSocket.hpp libmaus2/network/SingleFileServer.hpp libmaus2/network/UrlInputStreamFactory.hpp '/<>/debian/tmp/usr/include/libmaus2/network' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/parallel' /usr/bin/install -c -m 644 libmaus2/parallel/OMPLock.hpp libmaus2/parallel/PosixMutex.hpp libmaus2/parallel/PosixSpinLock.hpp libmaus2/parallel/PosixSemaphore.hpp libmaus2/parallel/SynchronousQueue.hpp libmaus2/parallel/TerminatableSynchronousQueue.hpp libmaus2/parallel/PosixMutexArray.hpp libmaus2/parallel/PosixThread.hpp libmaus2/parallel/Pipe.hpp libmaus2/parallel/SynchronousHeap.hpp libmaus2/parallel/TerminatableSynchronousHeap.hpp libmaus2/parallel/SynchronousReorderSet.hpp libmaus2/parallel/TerminatableSynchronousReorderSet.hpp libmaus2/parallel/SynchronousCounter.hpp libmaus2/parallel/PosixProcess.hpp libmaus2/parallel/OMPNumThreadsScope.hpp libmaus2/parallel/LockedBool.hpp libmaus2/parallel/ThreadWorkPackage.hpp libmaus2/parallel/ThreadWorkPackageComparator.hpp libmaus2/parallel/ThreadPoolInterfaceEnqueTermInterface.hpp libmaus2/parallel/ThreadWorkPackageDispatcher.hpp libmaus2/parallel/ThreadPoolInterface.hpp libmaus2/parallel/ThreadPoolThread.hpp libmaus2/parallel/ThreadPool.hpp libmaus2/parallel/SimpleThreadPool.hpp libmaus2/parallel/SimpleThreadPoolInterfaceEnqueTermInterface.hpp libmaus2/parallel/SimpleThreadPoolInterface.hpp libmaus2/parallel/SimpleThreadPoolThread.hpp libmaus2/parallel/SimpleThreadPoolWorkPackageFreeList.hpp libmaus2/parallel/SimpleThreadWorkPackageComparator.hpp libmaus2/parallel/SimpleThreadWorkPackageDispatcher.hpp libmaus2/parallel/SimpleThreadWorkPackage.hpp libmaus2/parallel/LockedQueue.hpp libmaus2/parallel/NumCpus.hpp libmaus2/parallel/LockedFreeList.hpp libmaus2/parallel/LockedHeap.hpp libmaus2/parallel/LockedCounter.hpp libmaus2/parallel/LockedGrowingFreeList.hpp libmaus2/parallel/PosixConditionSemaphore.hpp libmaus2/parallel/NamedPosixSemaphore.hpp '/<>/debian/tmp/usr/include/libmaus2/parallel' /usr/bin/install -c -m 644 libmaus2/lz/BgzfDeflateParallel.hpp libmaus2/lz/BgzfVirtualOffset.hpp libmaus2/lz/BgzfInflateDeflateParallelWrapper.hpp libmaus2/lz/BgzfInflateDeflateParallelInputStream.hpp libmaus2/lz/BgzfDeflateOutputCallback.hpp libmaus2/lz/BgzfDeflateOutputCallbackMD5.hpp libmaus2/lz/BgzfParallelRecodeDeflateBase.hpp libmaus2/lz/BgzfRecodeParallel.hpp libmaus2/lz/BgzfDeflateZStreamBaseFlushInfo.hpp libmaus2/lz/Lz4Base.hpp libmaus2/lz/Lz4CompressStreamBuffer.hpp libmaus2/lz/Lz4CompressWrapper.hpp libmaus2/lz/Lz4Decoder.hpp libmaus2/lz/Lz4Index.hpp libmaus2/lz/Lz4Compress.hpp libmaus2/lz/Lz4CompressStream.hpp libmaus2/lz/Lz4DecoderBuffer.hpp libmaus2/lz/GzipOutputStreamBuffer.hpp libmaus2/lz/GzipOutputStream.hpp libmaus2/lz/BgzfInflateInfo.hpp libmaus2/lz/BgzfStreamWrapper.hpp libmaus2/lz/CompressorObject.hpp libmaus2/lz/CompressorObjectFactory.hpp libmaus2/lz/SimpleCompressedOutputStream.hpp libmaus2/lz/SnappyCompressorObject.hpp libmaus2/lz/SnappyCompressorObjectFactory.hpp libmaus2/lz/DecompressorObject.hpp libmaus2/lz/DecompressorObjectFactory.hpp libmaus2/lz/SnappyDecompressorObject.hpp libmaus2/lz/SnappyDecompressorObjectFactory.hpp libmaus2/lz/SimpleCompressedInputStream.hpp libmaus2/lz/SimpleCompressedConcatInputStreamFragment.hpp libmaus2/lz/SimpleCompressedConcatInputStream.hpp libmaus2/lz/SnappyInputStreamArrayFile.hpp libmaus2/lz/SnappyInputStreamArray.hpp libmaus2/lz/SnappyStringInputStream.hpp libmaus2/lz/SnappyOffsetFileInputStream.hpp libmaus2/lz/SnappyFileInputStream.hpp libmaus2/lz/SnappyInputStream.hpp libmaus2/lz/SnappyFileOutputStream.hpp '/<>/debian/tmp/usr/include/libmaus2/lz/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/quantisation/' /usr/bin/install -c -m 644 libmaus2/quantisation/Quantiser.hpp libmaus2/quantisation/ClusterComputation.hpp libmaus2/quantisation/KmeansDataType.hpp '/<>/debian/tmp/usr/include/libmaus2/quantisation/' /usr/bin/install -c -m 644 libmaus2/parallel/SimpleSemaphoreInterface.hpp libmaus2/parallel/TimedSemaphoreInterface.hpp '/<>/debian/tmp/usr/include/libmaus2/parallel' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/random' /usr/bin/install -c -m 644 libmaus2/lz/SnappyOutputStream.hpp libmaus2/lz/SimpleCompressedStreamInterval.hpp libmaus2/lz/ZlibCompressorObjectFactory.hpp libmaus2/lz/ZlibDecompressorObjectFactory.hpp libmaus2/lz/ZlibCompressorObject.hpp libmaus2/lz/ZlibDecompressorObject.hpp libmaus2/lz/SimpleCompressedStreamNamedInterval.hpp libmaus2/lz/SimpleCompressedInputBlock.hpp libmaus2/lz/SimpleCompressedInputBlockConcat.hpp libmaus2/lz/SimpleCompressedInputBlockConcatBlock.hpp libmaus2/lz/RAZFConstants.hpp libmaus2/lz/RAZFDecoderBuffer.hpp libmaus2/lz/RAZFDecoder.hpp libmaus2/lz/RAZFIndex.hpp libmaus2/lz/IGzipDeflate.hpp libmaus2/lz/IsGzip.hpp libmaus2/lz/BufferedGzipStreamWrapper.hpp libmaus2/lz/StreamWrapperBuffer.hpp libmaus2/lz/BufferedGzipStreamBuffer.hpp libmaus2/lz/PlainOrGzipStreamBufferWrapper.hpp libmaus2/lz/PlainOrGzipStream.hpp libmaus2/lz/LineSplittingGzipOutputStreamBuffer.hpp libmaus2/lz/LineSplittingGzipOutputStream.hpp libmaus2/lz/CompressorObjectFreeListAllocator.hpp libmaus2/lz/SnappyCompressorObjectFreeListAllocator.hpp libmaus2/lz/SnappyCompressorObjectFactoryWrapper.hpp libmaus2/lz/ZlibCompressorObjectFactoryWrapper.hpp libmaus2/lz/ZlibCompressorObjectFreeListAllocator.hpp libmaus2/lz/CompressorObjectFreeListAllocatorFactory.hpp libmaus2/lz/BgzfDeflateOutputBufferBaseTypeInfo.hpp libmaus2/lz/BgzfDeflateOutputBufferBaseAllocator.hpp libmaus2/lz/BgzfDeflateZStreamBaseAllocator.hpp libmaus2/lz/BgzfDeflateZStreamBaseTypeInfo.hpp libmaus2/lz/BgzfInflateZStreamBaseAllocator.hpp libmaus2/lz/BgzfInflateZStreamBaseTypeInfo.hpp libmaus2/lz/XzDecoder.hpp libmaus2/lz/XzInputStreamBuffer.hpp libmaus2/lz/XzInputStream.hpp libmaus2/lz/BlockInflate.hpp libmaus2/lz/ConcatBlockInflate.hpp '/<>/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lz/ZlibInterface.hpp libmaus2/lz/BgzfInflateFile.hpp '/<>/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/random/Random.hpp libmaus2/random/UniformUnitRandom.hpp libmaus2/random/GaussianRandom.hpp libmaus2/random/DNABaseNoiseSpiker.hpp libmaus2/random/Poisson.hpp libmaus2/random/LogNormalRandom.hpp '/<>/debian/tmp/usr/include/libmaus2/random' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/rank' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/rl' /usr/bin/install -c -m 644 libmaus2/rank/ChooseCache.hpp libmaus2/rank/CodeBase.hpp libmaus2/rank/DecodeCache.hpp libmaus2/rank/ERank222BAppend.hpp libmaus2/rank/ERank222B.hpp libmaus2/rank/ERank222BP.hpp libmaus2/rank/ERank222.hpp libmaus2/rank/ERank22B.hpp libmaus2/rank/ERank22.hpp libmaus2/rank/ERank2.hpp libmaus2/rank/ERank3C.hpp libmaus2/rank/ERank3.hpp libmaus2/rank/ERankBase.hpp libmaus2/rank/ERank.hpp libmaus2/rank/log2table.hpp libmaus2/rank/popcnt.hpp libmaus2/rank/RankTable.hpp libmaus2/rank/Proc01.hpp libmaus2/rank/EncodeCache.hpp libmaus2/rank/CacheLineRank.hpp libmaus2/rank/ImpCacheLineRank.hpp libmaus2/rank/ERank222BBase.hpp libmaus2/rank/ERank222BAppendDynamic.hpp libmaus2/rank/RunLengthBitVectorBase.hpp libmaus2/rank/RunLengthBitVector.hpp libmaus2/rank/RunLengthBitVectorGenerator.hpp libmaus2/rank/RunLengthBitVectorStream.hpp libmaus2/rank/RunLengthBitVectorGeneratorBase.hpp libmaus2/rank/RunLengthBitVectorGeneratorGammaBase.hpp libmaus2/rank/FastRank.hpp libmaus2/rank/BSwapBase.hpp libmaus2/rank/DNARank.hpp libmaus2/rank/DNARankKmerCache.hpp libmaus2/rank/DNARankBiDir.hpp libmaus2/rank/DNARankBiDirRange.hpp libmaus2/rank/DNARankMEM.hpp libmaus2/rank/DNARankMEMPosComparator.hpp libmaus2/rank/DNARankSMEMContext.hpp libmaus2/rank/DNARankSMEMComputation.hpp libmaus2/rank/DNARankGetPosition.hpp '/<>/debian/tmp/usr/include/libmaus2/rank' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/regex/' /usr/bin/install -c -m 644 libmaus2/rl/RLIndex.hpp '/<>/debian/tmp/usr/include/libmaus2/rl' /usr/bin/install -c -m 644 libmaus2/regex/PosixRegex.hpp '/<>/debian/tmp/usr/include/libmaus2/regex/' /usr/bin/install -c -m 644 libmaus2/rank/DNARankBiDirRangeSizeComparator.hpp libmaus2/rank/DNARankSuffixTreeNodeEnumeratorQueueElement.hpp libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp '/<>/debian/tmp/usr/include/libmaus2/rank' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/rmq' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/select' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/serialize/' /usr/bin/install -c -m 644 libmaus2/rmq/FischerSystematicSuccinctRMQ.hpp libmaus2/rmq/QuickDynamicRMQ.hpp libmaus2/rmq/CartesianTree.hpp libmaus2/rmq/RMMTree.hpp '/<>/debian/tmp/usr/include/libmaus2/rmq' /usr/bin/install -c -m 644 libmaus2/select/ESelect222B.hpp libmaus2/select/ESelectBase.hpp libmaus2/select/ESelectSimple.hpp libmaus2/select/ImpCacheLineSelectSupport.hpp '/<>/debian/tmp/usr/include/libmaus2/select' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/suffixsort' /usr/bin/install -c -m 644 libmaus2/serialize/Serialize.hpp '/<>/debian/tmp/usr/include/libmaus2/serialize/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/sorting' /usr/bin/install -c -m 644 libmaus2/suffixsort/SkewSuffixSort.hpp libmaus2/suffixsort/divsufsort.hpp libmaus2/suffixsort/SAIS_Mori.hpp libmaus2/suffixsort/SuccinctFactorList.hpp libmaus2/suffixsort/SAISUtils.hpp libmaus2/suffixsort/OSInduce.hpp libmaus2/suffixsort/CircularBwt.hpp libmaus2/suffixsort/CircularSuffixComparator.hpp libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp libmaus2/suffixsort/BwtMergeZBlock.hpp libmaus2/suffixsort/BwtMergeTempFileNameSetVector.hpp libmaus2/suffixsort/BwtMergeBlockSortResult.hpp libmaus2/suffixsort/BwtMergeZBlockRequest.hpp libmaus2/suffixsort/BwtMergeZBlockRequestVector.hpp libmaus2/suffixsort/GapMergePacket.hpp libmaus2/suffixsort/BwtMergeEnumBase.hpp libmaus2/suffixsort/ByteInputTypes.hpp libmaus2/suffixsort/CompactInputTypes.hpp libmaus2/suffixsort/PacInputTypes.hpp libmaus2/suffixsort/PacTermInputTypes.hpp libmaus2/suffixsort/Utf8InputTypes.hpp libmaus2/suffixsort/Lz4InputTypes.hpp libmaus2/suffixsort/GapArrayByteDecoderBuffer.hpp libmaus2/suffixsort/GapArrayByte.hpp libmaus2/suffixsort/GapArrayByteDecoder.hpp libmaus2/suffixsort/GapArrayByteOverflowKeyAccessor.hpp libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp libmaus2/suffixsort/SmallestRotation.hpp '/<>/debian/tmp/usr/include/libmaus2/suffixsort' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/suffixsort/bwtb3m' /usr/bin/install -c -m 644 libmaus2/sorting/sorting.hpp libmaus2/sorting/ParallelRadixSort.hpp libmaus2/sorting/SerialRadixSort64.hpp libmaus2/sorting/PairFileSorting.hpp libmaus2/sorting/InPlaceParallelSort.hpp libmaus2/sorting/MergingReadBack.hpp libmaus2/sorting/SortingBufferedOutputFile.hpp libmaus2/sorting/MergeStepBinSearchResult.hpp libmaus2/sorting/ParallelStableSort.hpp libmaus2/sorting/SemiExternalKeyTupleSort.hpp libmaus2/sorting/InterleavedRadixSort.hpp libmaus2/sorting/ParallelRunLengthRadixUnsort.hpp libmaus2/sorting/ParallelRunLengthRadixSort.hpp libmaus2/sorting/ParallelExternalRadixSort.hpp '/<>/debian/tmp/usr/include/libmaus2/sorting' /usr/bin/install -c -m 644 libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalSmallBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeExternalBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp libmaus2/suffixsort/bwtb3m/BaseBlockSorting.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortOptions.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp '/<>/debian/tmp/usr/include/libmaus2/suffixsort/bwtb3m' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/suffixtree' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/sv' /usr/bin/install -c -m 644 libmaus2/suffixtree/CompressedSuffixTree.hpp '/<>/debian/tmp/usr/include/libmaus2/suffixtree' /usr/bin/install -c -m 644 libmaus2/sv/sv.hpp '/<>/debian/tmp/usr/include/libmaus2/sv' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/timing' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/trie' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/types/' /usr/bin/install -c -m 644 libmaus2/timing/RealTimeClock.hpp '/<>/debian/tmp/usr/include/libmaus2/timing' /usr/bin/install -c -m 644 libmaus2/trie/TrieState.hpp libmaus2/trie/SimpleTrie.hpp '/<>/debian/tmp/usr/include/libmaus2/trie' /usr/bin/install -c -m 644 libmaus2/types/types.hpp '/<>/debian/tmp/usr/include/libmaus2/types/' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/uint' /usr/bin/install -c -m 644 libmaus2/uint/uint.hpp '/<>/debian/tmp/usr/include/libmaus2/uint' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/util' /bin/mkdir -p '/<>/debian/tmp/usr/include/libmaus2/wavelet' /usr/bin/install -c -m 644 libmaus2/wavelet/toWaveletTreeBits.hpp libmaus2/wavelet/WaveletTree.hpp libmaus2/wavelet/HuffmanWaveletTree.hpp libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp libmaus2/wavelet/DynamicWaveletTree.hpp libmaus2/wavelet/ExternalWaveletGenerator.hpp libmaus2/wavelet/ImpWaveletTree.hpp libmaus2/wavelet/ImpExternalWaveletGenerator.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorHuffmanParallel.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp libmaus2/wavelet/ImpHuffmanWaveletTree.hpp libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp libmaus2/wavelet/RlToHwtBase.hpp libmaus2/wavelet/RlToHwtTermRequest.hpp '/<>/debian/tmp/usr/include/libmaus2/wavelet' /usr/bin/install -c -m 644 libmaus2/util/stringFunctions.hpp libmaus2/util/BitList.hpp libmaus2/util/VarBitList.hpp libmaus2/util/VarList.hpp libmaus2/util/IntervalTree.hpp libmaus2/util/LookupIntervalTree.hpp libmaus2/util/StringSerialisation.hpp libmaus2/util/NumberSerialisation.hpp libmaus2/util/GetFileSize.hpp libmaus2/util/unique_ptr.hpp libmaus2/util/shared_ptr.hpp libmaus2/util/TempFileNameGenerator.hpp libmaus2/util/TempFileNameGeneratorState.hpp libmaus2/util/Demangle.hpp libmaus2/util/BitsPerNum.hpp libmaus2/util/ArgInfo.hpp libmaus2/util/Concat.hpp libmaus2/util/ConcatRequest.hpp libmaus2/util/PosixExecute.hpp libmaus2/util/StackTrace.hpp libmaus2/util/CompactNumberArray.hpp libmaus2/util/ArrayIterator.hpp libmaus2/util/OffsetArray.hpp libmaus2/util/Array832.hpp libmaus2/util/Array864.hpp libmaus2/util/NegativeDifferenceArray32.hpp libmaus2/util/NegativeDifferenceArray64.hpp libmaus2/util/PositiveDifferenceArray32.hpp libmaus2/util/PositiveDifferenceArray64.hpp libmaus2/util/UniqueIndex.hpp libmaus2/util/Terminal.hpp libmaus2/util/nstat.hpp libmaus2/util/WriteableString.hpp libmaus2/util/LogPipe.hpp libmaus2/util/MoveStack.hpp libmaus2/util/LongestIncreasingSubsequence.hpp libmaus2/util/utf8.hpp libmaus2/util/MemLimit.hpp libmaus2/util/Histogram.hpp libmaus2/util/IncreasingList.hpp '/<>/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/GenericSerialisation.hpp libmaus2/util/ConsoleColor.hpp libmaus2/util/LogPipeMultiplex.hpp libmaus2/util/LogPipeMultiplexGeneric.hpp libmaus2/util/iterator.hpp libmaus2/util/SaturatingCounter.hpp libmaus2/util/I386CacheLineSize.hpp libmaus2/util/IncreasingStack.hpp libmaus2/util/NearestNeighbourDictionary.hpp libmaus2/util/MemUsage.hpp libmaus2/util/unordered_set.hpp libmaus2/util/unordered_map.hpp libmaus2/util/ReverseByteOrder.hpp libmaus2/util/SimpleBloomFilter.hpp libmaus2/util/SimpleCountingHash.hpp libmaus2/util/SimpleHashMap.hpp libmaus2/util/SimpleHashSet.hpp libmaus2/util/OutputFileNameTools.hpp libmaus2/util/LELoad.hpp libmaus2/util/GetObject.hpp libmaus2/util/PutObject.hpp libmaus2/util/PutObjectReverse.hpp libmaus2/util/CountPutObject.hpp libmaus2/util/CountPutIterator.hpp libmaus2/util/PosixFileDescriptor.hpp libmaus2/util/AlphaDigitTable.hpp libmaus2/util/AlphaTable.hpp libmaus2/util/DigitTable.hpp libmaus2/util/TempFileRemovalContainer.hpp libmaus2/util/DynamicLoading.hpp libmaus2/util/Object.hpp libmaus2/util/KMP.hpp libmaus2/util/NumberMapSerialisation.hpp libmaus2/util/Utf8BlockIndex.hpp libmaus2/util/Utf8DecoderBuffer.hpp libmaus2/util/Utf8String.hpp libmaus2/util/UnsignedCharVariant.hpp libmaus2/util/CountGetObject.hpp libmaus2/util/HistogramSet.hpp libmaus2/util/GenericIntervalTree.hpp '/<>/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/PosixInputFile.hpp libmaus2/util/OctetString.hpp libmaus2/util/Utf8StringPairAdapter.hpp libmaus2/util/Utf8BlockIndexDecoder.hpp libmaus2/util/Utf8DecoderWrapper.hpp libmaus2/util/TempFileContainer.hpp libmaus2/util/FileTempFileContainer.hpp libmaus2/util/MemTempFileContainer.hpp libmaus2/util/ImpCompactNumberArray.hpp libmaus2/util/ContainerGetObject.hpp libmaus2/util/PushBuffer.hpp libmaus2/util/SuccinctBorderArray.hpp libmaus2/util/LineAccessor.hpp libmaus2/util/StringMapCompare.hpp libmaus2/util/FreeList.hpp libmaus2/util/ToUpperTable.hpp libmaus2/util/BorderArray.hpp libmaus2/util/SimpleHashMapConstants.hpp libmaus2/util/SimpleHashMapKeyPrint.hpp libmaus2/util/GrowingFreeList.hpp libmaus2/util/SimpleHashMapHashCompute.hpp libmaus2/util/SimpleHashMapInsDel.hpp libmaus2/util/SimpleHashMapNumberCast.hpp libmaus2/util/SimpleHashSetInsDel.hpp libmaus2/util/LineBuffer.hpp libmaus2/util/UnsignedIntegerIndexIterator.hpp libmaus2/util/FiniteSizeHeap.hpp libmaus2/util/UnitNum.hpp libmaus2/util/NotDigitOrTermTable.hpp libmaus2/util/ArgInfoParseBase.hpp libmaus2/util/ReverseAdapter.hpp libmaus2/util/MemoryStatistics.hpp libmaus2/util/LongestIncreasingSubsequenceExtendedResult.hpp libmaus2/util/ArgParser.hpp libmaus2/util/PrefixSums.hpp libmaus2/util/NumberToString.hpp libmaus2/util/SplayTree.hpp libmaus2/util/Queue.hpp libmaus2/util/ContainerElementFreeList.hpp libmaus2/util/HugePages.hpp '/<>/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/HugePageAllocator.hpp libmaus2/util/StringAllocTypes.hpp libmaus2/util/Destructable.hpp libmaus2/util/SimpleQueue.hpp libmaus2/util/SimpleHashMapDisplaceMaskFunction.hpp libmaus2/util/Command.hpp libmaus2/util/CommandContainer.hpp libmaus2/util/Enumerator.hpp libmaus2/util/LocalTempContainer.hpp libmaus2/util/ContainerDescription.hpp libmaus2/util/ContainerDescriptionList.hpp '/<>/debian/tmp/usr/include/libmaus2/util' libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.a /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a libtool: install: ranlib /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.a /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a libtool: install: ranlib /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in test make[2]: Entering directory '/<>/test' make[3]: Entering directory '/<>/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/test' make[2]: Leaving directory '/<>/test' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/libmaus2' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libmaus2.pc libmaus2digests.pc libmaus2seqchksumsfactory.pc libmaus2fftw.pc '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 ChangeLog '/<>/debian/tmp/usr/share/doc/libmaus2' make install-data-hook make[4]: Entering directory '/<>' cd /<>/debian/tmp/usr/share/doc/libmaus2 && mv ChangeLog changelog && gzip -f -n -9 changelog make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -O--parallel install -d debian/libmaus2/usr/lib/x86_64-linux-gnu/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.so.2 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 debian/libmaus2/usr/lib/x86_64-linux-gnu// install -d debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.381/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.381/libmaus2_scram_mod.so debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.381// install -d debian/libmaus2/usr/share/doc/libmaus2/ cp --reflink=auto -a debian/tmp/usr/share/doc/libmaus2/changelog.gz debian/libmaus2/usr/share/doc/libmaus2// install -d debian/libmaus2-dev/usr/include/ cp --reflink=auto -a debian/tmp/usr/include/libmaus2 debian/libmaus2-dev/usr/include// install -d debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.so debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2digests.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2digests_sse4.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2seqchksumsfactory.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// install -d debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2.pc debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/pkgconfig/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2digests.pc debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/pkgconfig/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2fftw.pc debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/pkgconfig/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2seqchksumsfactory.pc debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/pkgconfig/ dh_installdocs -O--parallel install -p -m0644 debian/copyright debian/libmaus2/usr/share/doc/libmaus2/copyright install -d debian/libmaus2-dev/usr/share/doc/libmaus2-dev install -p -m0644 debian/copyright debian/libmaus2-dev/usr/share/doc/libmaus2-dev/copyright dh_installchangelogs -O--parallel install -p -m0644 debian/changelog debian/libmaus2/usr/share/doc/libmaus2/changelog.Debian install -p -m0644 debian/changelog debian/libmaus2-dev/usr/share/doc/libmaus2-dev/changelog.Debian dh_lintian -O--parallel install -d debian/libmaus2/usr/share/lintian/overrides install -p -m0644 debian/libmaus2.lintian-overrides debian/libmaus2/usr/share/lintian/overrides/libmaus2 dh_perl -O--parallel dh_link -O--parallel rm -f debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2 ln -sf libmaus2_simd_align_128.so.2.0.381 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2 rm -f debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2 ln -sf libmaus2_simd_align_256.so.2.0.381 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2 rm -f debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2 ln -sf libmaus2.so.2.0.381 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2 rm -f debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2.so ln -sf libmaus2.so.2.0.381 debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2.so rm -f debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so ln -sf libmaus2_simd_align_128.so.2.0.381 debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so rm -f debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so ln -sf libmaus2_simd_align_256.so.2.0.381 debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so dh_strip_nondeterminism -O--parallel dh_compress -O--parallel cd debian/libmaus2 chmod a-x usr/share/doc/libmaus2/changelog.Debian gzip -9nf usr/share/doc/libmaus2/changelog.Debian cd '/<>' cd debian/libmaus2-dev chmod a-x usr/share/doc/libmaus2-dev/changelog.Debian gzip -9nf usr/share/doc/libmaus2-dev/changelog.Debian cd '/<>' dh_fixperms -O--parallel find debian/libmaus2 -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libmaus2 ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libmaus2/usr/share/doc -type f ! -regex 'debian/libmaus2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libmaus2/usr/share/man debian/libmaus2/usr/man/ debian/libmaus2/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2/usr/lib/x86_64-linux-gnu/perl5/5.22 debian/libmaus2/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/libmaus2 -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libmaus2/usr/share/lintian/overrides -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libmaus2-dev ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libmaus2-dev/usr/share/doc -type f ! -regex 'debian/libmaus2-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libmaus2-dev/usr/share/man debian/libmaus2-dev/usr/man/ debian/libmaus2-dev/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/perl5/5.22 debian/libmaus2-dev/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/libmaus2-dev -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_strip -O--parallel dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.381/libmaus2_scram_mod.so strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2digests.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2digests_sse4.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2seqchksumsfactory.a dh_makeshlibs -O--parallel rm -f debian/libmaus2/DEBIAN/shlibs install -d debian/libmaus2/DEBIAN echo 'libmaus2 2 libmaus2' >>debian/libmaus2/DEBIAN/shlibs echo 'libmaus2_simd_align_128 2 libmaus2' >>debian/libmaus2/DEBIAN/shlibs echo 'libmaus2_simd_align_256 2 libmaus2' >>debian/libmaus2/DEBIAN/shlibs install -d debian/.debhelper/generated/libmaus2 mv -f debian/.debhelper/generated/libmaus2/triggers.new debian/.debhelper/generated/libmaus2/triggers install -p -m0644 debian/libmaus2.shlibs debian/libmaus2/DEBIAN/shlibs chmod 0644 debian/libmaus2/DEBIAN/shlibs chown 0:0 debian/libmaus2/DEBIAN/shlibs rm -f debian/libmaus2-dev/DEBIAN/shlibs dh_shlibdeps -O--parallel dpkg-shlibdeps -Tdebian/libmaus2.substvars debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.381/libmaus2_scram_mod.so debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray22AutoArray_peakmemusageE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_unlock used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_lock used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util10StackTraceC2Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTVN8libmaus24util10StackTraceE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util8Demangle12demangleNameENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray16AutoArray_maxmemE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNK8libmaus24util10StackTrace8toStringB5cxx11Eb used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23aio10StreamLock8cerrlockE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTIN8libmaus24util10StackTraceE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _ZTIN8libmaus24util10StackTraceE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTVN8libmaus24util10StackTraceE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util8Demangle12demangleNameENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_lock used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_unlock used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23aio10StreamLock8cerrlockE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util10StackTraceD2Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray18AutoArray_memusageE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray16AutoArray_maxmemE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNK8libmaus24util10StackTrace8toStringB5cxx11Eb used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol pthread_spin_lock used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol sem_post used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol sem_trywait used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23lcs34SimdX86BandedGlobalAlignmentX128_8C1Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol sem_wait used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_join used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23lcs28SimdX86GlobalAlignmentY256_8C1Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23lcs34SimdX86BandedGlobalAlignmentY256_8C1Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23lcs29SimdX86GlobalAlignmentX128_16C1Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23lcs29SimdX86GlobalAlignmentY256_16C1Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 found in none of the libraries dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.381/libmaus2_scram_mod.so was not linked against libpthread.so.0 (it uses none of the library's symbols) install -d debian/libmaus2-dev/DEBIAN dh_installdeb -O--parallel install -p -m0644 debian/libmaus2.shlibs debian/libmaus2/DEBIAN/shlibs install -p -m0644 debian/.debhelper/generated/libmaus2/triggers debian/libmaus2/DEBIAN/triggers dh_gencontrol -O--parallel echo misc:Depends= >> debian/libmaus2.substvars echo misc:Pre-Depends= >> debian/libmaus2.substvars dpkg-gencontrol -plibmaus2 -ldebian/changelog -Tdebian/libmaus2.substvars -Pdebian/libmaus2 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/libmaus2/DEBIAN/control chown 0:0 debian/libmaus2/DEBIAN/control echo misc:Depends= >> debian/libmaus2-dev.substvars echo misc:Pre-Depends= >> debian/libmaus2-dev.substvars dpkg-gencontrol -plibmaus2-dev -ldebian/changelog -Tdebian/libmaus2-dev.substvars -Pdebian/libmaus2-dev dpkg-gencontrol: warning: Depends field of package libmaus2-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/libmaus2-dev/DEBIAN/control chown 0:0 debian/libmaus2-dev/DEBIAN/control dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: libmaus2 libmaus2-dev dh_gencontrol debug symbol wrapper: packages to act on: libmaus2 libmaus2-dev dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: no debian/libmaus2-dbgsym, skipping package libmaus2 dh_gencontrol debug symbol wrapper: no debian/libmaus2-dev-dbgsym, skipping package libmaus2-dev dh_md5sums -O--parallel (cd debian/libmaus2 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/libmaus2/DEBIAN/md5sums chown 0:0 debian/libmaus2/DEBIAN/md5sums (cd debian/libmaus2-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/libmaus2-dev/DEBIAN/md5sums chown 0:0 debian/libmaus2-dev/DEBIAN/md5sums dh_builddeb -O--parallel dpkg-deb --build debian/libmaus2 .. dpkg-deb --build debian/libmaus2-dev .. INFO: pkgstriptranslations version 129 INFO: pkgstriptranslations version 129 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package 'libmaus2' in '../libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.deb'. INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package 'libmaus2-dev' in '../libmaus2-dev_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build libmaus2-2.0.381 dpkg-source: info: using options from libmaus2-2.0.381/debian/source/options: --single-debian-patch dpkg-source: warning: --single-debian-patch is not a valid option for Dpkg::Source::Package::V3::Native dpkg-buildpackage: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170914-1244 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.changes: ---------------------------------------------------------------- Format: 1.8 Date: Thu, 14 Sep 2017 12:02:06 +0000 Source: libmaus2 Binary: libmaus2 libmaus2-dev Architecture: amd64 Version: 2.0.381-1+706+201709141202~ubuntu16.04.1 Distribution: xenial Urgency: low Maintainer: Launchpad Build Daemon Changed-By: German Tischler Description: libmaus2 - libmaus2 is a collection of data structures and algorithms libmaus2-dev - Development files for libmaus2 (headers, libraries and pkg-config Changes: libmaus2 (2.0.381-1+706+201709141202~ubuntu16.04.1) xenial; urgency=low . * Auto build. Checksums-Sha1: f84416387cf926115e4575fbc9b5b21757319a0a 2859238 libmaus2-dev_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.deb 7389dc952c589437d165ffea36122d36cebaa1e3 1217264 libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.deb Checksums-Sha256: 8a2ae61a478027ed49b6bb96a16ea59a5f020c6403bc42f1d6ccd9979b164d2e 2859238 libmaus2-dev_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.deb ed85a959d60226427888d00fb2973b5ccf298b69d767475a3e9a5f61b4e15178 1217264 libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.deb Files: f67cfe6f747f50453471250265072b11 2859238 libdevel optional libmaus2-dev_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.deb 8570813a2c439813e520efde640cc4e3 1217264 libs optional libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libmaus2-dev_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.deb --------------------------------------------------------------- new debian package, version 2.0. size 2859238 bytes: control archive=46361 bytes. 1139 bytes, 22 lines control 143710 bytes, 1621 lines md5sums Package: libmaus2-dev Source: libmaus2 Version: 2.0.381-1+706+201709141202~ubuntu16.04.1 Architecture: amd64 Maintainer: German Tischler Installed-Size: 37008 Depends: libmaus2 (= 2.0.381-1+706+201709141202~ubuntu16.04.1), pkg-config (>= 0.22), zlib1g-dev (>= 1.2.3), libsnappy-dev (>= 1.0.3), seqan-dev (>= 1.2), libgnutls-dev (>= 2.12.14), liblzma-dev (>= 5.1.0) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/gt1/libmaus2 Description: Development files for libmaus2 (headers, libraries and pkg-config files) libmaus2 contains a collection of data structures and algorithms, many of which have applications in bio-informatics. In particular this includes . - I/O classes (single byte and UTF-8) - bitio classes (input, output and various forms of bit level manipulation) - text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) - BAM sequence alignment files input/output (simple and collating) . and many lower level support classes. This package contains the header files and libraries required for developing applications based on libmaus2. drwxr-xr-x root/root 0 2017-09-14 12:43 ./ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/include/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/include/libmaus2/ -rw-r--r-- root/root 2270 2017-09-14 12:43 ./usr/include/libmaus2/LibMausConfig.hpp drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/include/libmaus2/aio/ -rw-r--r-- root/root 3024 2017-09-14 12:43 ./usr/include/libmaus2/aio/ArrayFile.hpp -rw-r--r-- root/root 4312 2017-09-14 12:43 ./usr/include/libmaus2/aio/ArrayFileContainer.hpp -rw-r--r-- root/root 3011 2017-09-14 12:43 ./usr/include/libmaus2/aio/ArrayFileSet.hpp -rw-r--r-- root/root 1582 2017-09-14 12:43 ./usr/include/libmaus2/aio/ArrayInputStream.hpp -rw-r--r-- root/root 6634 2017-09-14 12:43 ./usr/include/libmaus2/aio/ArrayInputStreamBuffer.hpp -rw-r--r-- root/root 2379 2017-09-14 12:43 ./usr/include/libmaus2/aio/ArrayInputStreamFactory.hpp -rw-r--r-- root/root 8996 2017-09-14 12:43 ./usr/include/libmaus2/aio/AsynchronousBufferReader.hpp -rw-r--r-- root/root 4318 2017-09-14 12:43 ./usr/include/libmaus2/aio/AsynchronousFastReaderBase.hpp -rw-r--r-- root/root 12350 2017-09-14 12:43 ./usr/include/libmaus2/aio/AsynchronousReader.hpp -rw-r--r-- root/root 5963 2017-09-14 12:43 ./usr/include/libmaus2/aio/AsynchronousWriter.hpp -rw-r--r-- root/root 17938 2017-09-14 12:43 ./usr/include/libmaus2/aio/BlockSynchronousOutputBuffer8.hpp -rw-r--r-- root/root 1801 2017-09-14 12:43 ./usr/include/libmaus2/aio/Buffer.hpp -rw-r--r-- root/root 11541 2017-09-14 12:43 ./usr/include/libmaus2/aio/BufferedOutput.hpp -rw-r--r-- root/root 6776 2017-09-14 12:43 ./usr/include/libmaus2/aio/CheckedInputOutputStream.hpp -rw-r--r-- root/root 5739 2017-09-14 12:43 ./usr/include/libmaus2/aio/CheckedInputStream.hpp -rw-r--r-- root/root 2501 2017-09-14 12:43 ./usr/include/libmaus2/aio/CheckedInputStreamAtOffset.hpp -rw-r--r-- root/root 3475 2017-09-14 12:43 ./usr/include/libmaus2/aio/CheckedOutputStream.hpp -rw-r--r-- root/root 11294 2017-09-14 12:43 ./usr/include/libmaus2/aio/CircularBuffer.hpp -rw-r--r-- root/root 15933 2017-09-14 12:43 ./usr/include/libmaus2/aio/CircularWrapper.hpp -rw-r--r-- root/root 7422 2017-09-14 12:43 ./usr/include/libmaus2/aio/CompactDecoder4.hpp -rw-r--r-- root/root 2372 2017-09-14 12:43 ./usr/include/libmaus2/aio/CompactEncoder4.hpp -rw-r--r-- root/root 1493 2017-09-14 12:43 ./usr/include/libmaus2/aio/ConcatInputStream.hpp -rw-r--r-- root/root 8646 2017-09-14 12:43 ./usr/include/libmaus2/aio/ConcatInputStreamBuffer.hpp -rw-r--r-- root/root 1510 2017-09-14 12:43 ./usr/include/libmaus2/aio/DebugLineOutputStream.hpp -rw-r--r-- root/root 1831 2017-09-14 12:43 ./usr/include/libmaus2/aio/DebugLineOutputStreamBuffer.hpp -rw-r--r-- root/root 7311 2017-09-14 12:43 ./usr/include/libmaus2/aio/FileFragment.hpp -rw-r--r-- root/root 1196 2017-09-14 12:43 ./usr/include/libmaus2/aio/FileRemoval.hpp -rw-r--r-- root/root 4571 2017-09-14 12:43 ./usr/include/libmaus2/aio/GenericInput.hpp -rw-r--r-- root/root 4270 2017-09-14 12:43 ./usr/include/libmaus2/aio/GenericOutput.hpp -rw-r--r-- root/root 1936 2017-09-14 12:43 ./usr/include/libmaus2/aio/GetLength.hpp -rw-r--r-- root/root 1832 2017-09-14 12:43 ./usr/include/libmaus2/aio/IStreamWrapper.hpp -rw-r--r-- root/root 1636 2017-09-14 12:43 ./usr/include/libmaus2/aio/InputOutputStream.hpp -rw-r--r-- root/root 1505 2017-09-14 12:43 ./usr/include/libmaus2/aio/InputOutputStreamFactory.hpp -rw-r--r-- root/root 6156 2017-09-14 12:43 ./usr/include/libmaus2/aio/InputOutputStreamFactoryContainer.hpp -rw-r--r-- root/root 1339 2017-09-14 12:43 ./usr/include/libmaus2/aio/InputOutputStreamInstance.hpp -rw-r--r-- root/root 1234 2017-09-14 12:43 ./usr/include/libmaus2/aio/InputOutputStreamPointerWrapper.hpp -rw-r--r-- root/root 1748 2017-09-14 12:43 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./usr/include/libmaus2/aio/LimitedSynchronousGenericInput.hpp -rw-r--r-- root/root 2106 2017-09-14 12:43 ./usr/include/libmaus2/aio/LineSplittingPosixFdOutputStream.hpp -rw-r--r-- root/root 6160 2017-09-14 12:43 ./usr/include/libmaus2/aio/LineSplittingPosixFdOutputStreamBuffer.hpp -rw-r--r-- root/root 1842 2017-09-14 12:43 ./usr/include/libmaus2/aio/LinuxStreamingPosixFdOutputStream.hpp -rw-r--r-- root/root 5955 2017-09-14 12:43 ./usr/include/libmaus2/aio/LinuxStreamingPosixFdOutputStreamBuffer.hpp -rw-r--r-- root/root 2009 2017-09-14 12:43 ./usr/include/libmaus2/aio/MemInBuffer.hpp -rw-r--r-- root/root 1704 2017-09-14 12:43 ./usr/include/libmaus2/aio/MemOutBuffer.hpp -rw-r--r-- root/root 6607 2017-09-14 12:43 ./usr/include/libmaus2/aio/MemoryFile.hpp -rw-r--r-- root/root 3964 2017-09-14 12:43 ./usr/include/libmaus2/aio/MemoryFileAdapter.hpp -rw-r--r-- root/root 4362 2017-09-14 12:43 ./usr/include/libmaus2/aio/MemoryFileContainer.hpp -rw-r--r-- root/root 1533 2017-09-14 12:43 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./usr/include/libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp -rw-r--r-- root/root 74099 2017-09-14 12:43 ./usr/include/libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp -rw-r--r-- root/root 89588 2017-09-14 12:43 ./usr/include/libmaus2/wavelet/WaveletTree.hpp -rw-r--r-- root/root 1251 2017-09-14 12:43 ./usr/include/libmaus2/wavelet/toWaveletTreeBits.hpp drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/lib/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 15273148 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2.a lrwxrwxrwx root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2.so -> libmaus2.so.2.0.381 -rw-r--r-- root/root 276428 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a lrwxrwxrwx root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so -> libmaus2_simd_align_128.so.2.0.381 -rw-r--r-- root/root 435180 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a lrwxrwxrwx root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so -> libmaus2_simd_align_256.so.2.0.381 -rw-r--r-- root/root 233068 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2digests.a -rw-r--r-- root/root 89028 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2digests_sse4.a -rw-r--r-- root/root 11183308 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2seqchksumsfactory.a drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 403 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2.pc -rw-r--r-- root/root 349 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2digests.pc -rw-r--r-- root/root 315 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2fftw.pc -rw-r--r-- root/root 389 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2seqchksumsfactory.pc drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/share/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/share/doc/libmaus2-dev/ -rw-r--r-- root/root 5549 2017-09-14 12:02 ./usr/share/doc/libmaus2-dev/changelog.Debian.gz -rw-r--r-- root/root 15652 2017-09-14 12:02 ./usr/share/doc/libmaus2-dev/copyright libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1_amd64.deb ----------------------------------------------------------- new debian package, version 2.0. size 1217264 bytes: control archive=1171 bytes. 984 bytes, 20 lines control 650 bytes, 8 lines md5sums 129 bytes, 3 lines shlibs 60 bytes, 2 lines triggers Package: libmaus2 Version: 2.0.381-1+706+201709141202~ubuntu16.04.1 Architecture: amd64 Maintainer: German Tischler Installed-Size: 4756 Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.4), libgmp10, libgnutls30 (>= 3.4.2), libgomp1 (>= 4.9), liblzma5 (>= 5.1.1alpha+20120614), libnettle6, libsnappy1v5, libstdc++6 (>= 5.2), staden-io-lib-trunk Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/gt1/libmaus2 Description: libmaus2 is a collection of data structures and algorithms libmaus2 contains a collection of data structures and algorithms, many of which have applications in bio-informatics. In particular this includes . - I/O classes (single byte and UTF-8) - bitio classes (input, output and various forms of bit level manipulation) - text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) - BAM sequence alignment files input/output (simple and collating) . and many lower level support classes. drwxr-xr-x root/root 0 2017-09-14 12:43 ./ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/lib/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2.so.2 -> libmaus2.so.2.0.381 -rw-r--r-- root/root 4588424 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.381 drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2/2.0.381/ -rw-r--r-- root/root 14432 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2/2.0.381/libmaus2_scram_mod.so lrwxrwxrwx root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2 -> libmaus2_simd_align_128.so.2.0.381 -rw-r--r-- root/root 76208 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.381 lrwxrwxrwx root/root 0 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2 -> libmaus2_simd_align_256.so.2.0.381 -rw-r--r-- root/root 121280 2017-09-14 12:43 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.381 drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/share/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/share/doc/libmaus2/ -rw-r--r-- root/root 5549 2017-09-14 12:02 ./usr/share/doc/libmaus2/changelog.Debian.gz -rw-r--r-- root/root 25643 2017-09-14 12:43 ./usr/share/doc/libmaus2/changelog.gz -rw-r--r-- root/root 15652 2017-09-14 12:02 ./usr/share/doc/libmaus2/copyright drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-09-14 12:43 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 59 2017-09-14 12:02 ./usr/share/lintian/overrides/libmaus2 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 2221932 Build-Time: 2365 Distribution: xenial Host Architecture: amd64 Install-Time: 12 Job: libmaus2_2.0.381-1+706+201709141202~ubuntu16.04.1.dsc Machine Architecture: amd64 Package: libmaus2 Package-Time: 2379 Source-Version: 2.0.381-1+706+201709141202~ubuntu16.04.1 Space: 2221932 Status: successful Version: 2.0.381-1+706+201709141202~ubuntu16.04.1 -------------------------------------------------------------------------------- Finished at 20170914-1244 Build needed 00:39:39, 2221932k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=xenial --arch=amd64 PACKAGEBUILD-13374425 Scanning for processes to kill in build PACKAGEBUILD-13374425 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=xenial --arch=amd64 PACKAGEBUILD-13374425 Stopping target for build PACKAGEBUILD-13374425 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=xenial --arch=amd64 PACKAGEBUILD-13374425 Removing build PACKAGEBUILD-13374425