ESyS-Particle

Merge lp:esys-particle/esys-particle-win into lp:esys-particle

  1. esys-particle-win
  2. Merge into trunk
Proposed by Li Zhiyong
Status: Rejected
Rejected by: Dion Weatherley
Proposed branch: lp:esys-particle/esys-particle-win
Merge into: lp:esys-particle
Diff against target: 154343 lines (+148681/-0)
1113 files modified
trunk/AUTHORS (+33/-0)
trunk/CMakeLists.txt (+89/-0)
trunk/COPYING (+11/-0)
trunk/COPYRIGHT (+11/-0)
trunk/ChangeLog (+15/-0)
trunk/Config/Cpp.am (+14/-0)
trunk/Config/Python.am (+45/-0)
trunk/Config/ax_boost_base.m4 (+219/-0)
trunk/Config/ax_boost_filesystem.m4 (+112/-0)
trunk/Config/ax_boost_python.m4 (+91/-0)
trunk/Config/cppunit.m4 (+80/-0)
trunk/Config/pkg.m4 (+58/-0)
trunk/Config/python.m4 (+193/-0)
trunk/Config/rules.am (+58/-0)
trunk/Doc/FileFormat.ps (+2861/-0)
trunk/Doc/FileFormat.tex (+144/-0)
trunk/Doc/FileFormat.txt (+11/-0)
trunk/Doc/Manual/distutils.sty (+33/-0)
trunk/Doc/Manual/dump-file.tex (+2/-0)
trunk/Doc/Manual/fancyhdr.sty (+329/-0)
trunk/Doc/Manual/fncychap.sty (+433/-0)
trunk/Doc/Manual/geo-file.tex (+135/-0)
trunk/Doc/Manual/howto.cls (+107/-0)
trunk/Doc/Manual/ltxmarkup.sty (+40/-0)
trunk/Doc/Manual/manual.cls (+153/-0)
trunk/Doc/Manual/pypaper.sty (+18/-0)
trunk/Doc/Manual/python.ist (+11/-0)
trunk/Doc/Manual/python.sty (+1309/-0)
trunk/Doc/Manual/underscore.sty (+232/-0)
trunk/Doc/Manual/userman.tex (+1009/-0)
trunk/Doc/Refman/refman.tex (+676/-0)
trunk/Doxyfile (+1428/-0)
trunk/Fields/CMakeLists.txt (+158/-0)
trunk/Fields/CheckedScalarInteractionFieldSlave.h (+49/-0)
trunk/Fields/CheckedScalarInteractionFieldSlave.hpp (+186/-0)
trunk/Fields/CheckedScalarInteractionFieldSlaveTagged.h (+48/-0)
trunk/Fields/CheckedScalarInteractionFieldSlaveTagged.hpp (+120/-0)
trunk/Fields/CheckedVectorInteractionFieldSlave.h (+48/-0)
trunk/Fields/FieldMaster.cpp (+154/-0)
trunk/Fields/FieldMaster.h (+79/-0)
trunk/Fields/FieldSlave.cpp (+18/-0)
trunk/Fields/FieldSlave.h (+40/-0)
trunk/Fields/Fields_dll.h (+14/-0)
trunk/Fields/InteractionFieldMaster.cpp (+513/-0)
trunk/Fields/InteractionFieldMaster.h (+75/-0)
trunk/Fields/InteractionFieldSlave.h (+52/-0)
trunk/Fields/InteractionFieldSlave.hpp (+49/-0)
trunk/Fields/Makefile.am (+81/-0)
trunk/Fields/MaxTrigger.cpp (+51/-0)
trunk/Fields/MaxTrigger.h (+45/-0)
trunk/Fields/ParticleFieldMaster.cpp (+621/-0)
trunk/Fields/ParticleFieldMaster.h (+90/-0)
trunk/Fields/ScalarInteractionFieldSlave.h (+49/-0)
trunk/Fields/ScalarInteractionFieldSlave.hpp (+137/-0)
trunk/Fields/ScalarInteractionFieldSlaveTagged.h (+48/-0)
trunk/Fields/ScalarInteractionFieldSlaveTagged.hpp (+104/-0)
trunk/Fields/ScalarParticleDistributionMaster.cpp (+119/-0)
trunk/Fields/ScalarParticleDistributionMaster.h (+49/-0)
trunk/Fields/ScalarParticleFieldSlave.h (+50/-0)
trunk/Fields/ScalarParticleFieldSlave.hpp (+125/-0)
trunk/Fields/ScalarParticleFieldSlaveTagged.h (+48/-0)
trunk/Fields/ScalarParticleFieldSlaveTagged.hpp (+129/-0)
trunk/Fields/ScalarTriangleFieldMaster.cpp (+156/-0)
trunk/Fields/ScalarTriangleFieldMaster.h (+53/-0)
trunk/Fields/ScalarTriangleFieldSlave.cpp (+72/-0)
trunk/Fields/ScalarTriangleFieldSlave.h (+56/-0)
trunk/Fields/TriggeredVectorParticleFieldMaster.cpp (+122/-0)
trunk/Fields/TriggeredVectorParticleFieldMaster.h (+50/-0)
trunk/Fields/VectorEdge2DFieldSlave.cpp (+78/-0)
trunk/Fields/VectorEdge2DFieldSlave.h (+54/-0)
trunk/Fields/VectorInteractionFieldMaster.cpp (+414/-0)
trunk/Fields/VectorInteractionFieldMaster.h (+74/-0)
trunk/Fields/VectorInteractionFieldSlave.h (+50/-0)
trunk/Fields/VectorInteractionFieldSlave.hpp (+127/-0)
trunk/Fields/VectorParticleFieldSlave.h (+46/-0)
trunk/Fields/VectorParticleFieldSlave.hpp (+55/-0)
trunk/Fields/VectorParticleFieldSlaveTagged.h (+45/-0)
trunk/Fields/VectorParticleFieldSlaveTagged.hpp (+64/-0)
trunk/Fields/VectorTriangleFieldMaster.cpp (+156/-0)
trunk/Fields/VectorTriangleFieldMaster.h (+54/-0)
trunk/Fields/VectorTriangleFieldSlave.cpp (+72/-0)
trunk/Fields/VectorTriangleFieldSlave.h (+55/-0)
trunk/Fields/VectorWallFieldSlave.h (+40/-0)
trunk/Fields/VectorWallFieldSlave.hpp (+50/-0)
trunk/Fields/WallFieldMaster.cpp (+177/-0)
trunk/Fields/WallFieldMaster.h (+50/-0)
trunk/Fields/WallFieldSlave.cpp (+35/-0)
trunk/Fields/WallFieldSlave.h (+44/-0)
trunk/Fields/field_const.h (+39/-0)
trunk/Foundation/BoundingBox.cpp (+14/-0)
trunk/Foundation/BoundingBox.h (+58/-0)
trunk/Foundation/BoundingBox.hpp (+89/-0)
trunk/Foundation/BoundingSphere.cpp (+15/-0)
trunk/Foundation/BoundingSphere.h (+63/-0)
trunk/Foundation/BoundingSphere.hpp (+92/-0)
trunk/Foundation/CMakeLists.txt (+139/-0)
trunk/Foundation/Counter.cpp (+134/-0)
trunk/Foundation/Counter.h (+82/-0)
trunk/Foundation/Error.h (+35/-0)
trunk/Foundation/Foundation_dll.h (+14/-0)
trunk/Foundation/Functional.h (+83/-0)
trunk/Foundation/Makefile.am (+68/-0)
trunk/Foundation/Matrix3.cpp (+236/-0)
trunk/Foundation/Matrix3.h (+103/-0)
trunk/Foundation/Matrix3.hpp (+326/-0)
trunk/Foundation/PathSearcher.cpp (+60/-0)
trunk/Foundation/PathSearcher.h (+42/-0)
trunk/Foundation/PathUtil.cpp (+63/-0)
trunk/Foundation/PathUtil.h (+24/-0)
trunk/Foundation/Quaternion.cpp (+320/-0)
trunk/Foundation/Quaternion.h (+112/-0)
trunk/Foundation/Quaternion.hpp (+322/-0)
trunk/Foundation/RingBuffer.h (+42/-0)
trunk/Foundation/RingBuffer.hpp (+40/-0)
trunk/Foundation/Rng.cpp (+25/-0)
trunk/Foundation/Rng.h (+86/-0)
trunk/Foundation/Rng.hpp (+52/-0)
trunk/Foundation/Runnable.cpp (+22/-0)
trunk/Foundation/Runnable.h (+32/-0)
trunk/Foundation/StlIterator.h (+126/-0)
trunk/Foundation/StringUtil.cpp (+14/-0)
trunk/Foundation/StringUtil.h (+200/-0)
trunk/Foundation/Timer.cpp (+285/-0)
trunk/Foundation/Timer.h (+125/-0)
trunk/Foundation/console.cpp (+425/-0)
trunk/Foundation/console.h (+158/-0)
trunk/Foundation/cube_eq.cpp (+96/-0)
trunk/Foundation/cube_eq.h (+44/-0)
trunk/Foundation/quadtuple.h (+51/-0)
trunk/Foundation/quintuple.h (+51/-0)
trunk/Foundation/realdist.cpp (+94/-0)
trunk/Foundation/realdist.h (+40/-0)
trunk/Foundation/t_list.h (+118/-0)
trunk/Foundation/t_list.hpp (+338/-0)
trunk/Foundation/triplet.h (+50/-0)
trunk/Foundation/vec3.cpp (+33/-0)
trunk/Foundation/vec3.h (+145/-0)
trunk/Foundation/vec3.hpp (+326/-0)
trunk/Geometry/AEdge.cpp (+92/-0)
trunk/Geometry/AEdge.h (+43/-0)
trunk/Geometry/ARandomAssembly.cpp (+244/-0)
trunk/Geometry/ARandomAssembly.h (+73/-0)
trunk/Geometry/BasicInteraction.cpp (+39/-0)
trunk/Geometry/BasicInteraction.h (+86/-0)
trunk/Geometry/BlockGenerator.cpp (+154/-0)
trunk/Geometry/BlockGenerator.h (+94/-0)
trunk/Geometry/BoxPacker.cpp (+14/-0)
trunk/Geometry/BoxPacker.h (+79/-0)
trunk/Geometry/BoxPacker.hpp (+158/-0)
trunk/Geometry/CMakeLists.txt (+256/-0)
trunk/Geometry/CMakeLists.txt.bk08202011 (+258/-0)
trunk/Geometry/CircleBoxVolCalculator.cpp (+21/-0)
trunk/Geometry/CircleBoxVolCalculator.h (+49/-0)
trunk/Geometry/CircularNeighbourTable.cpp (+21/-0)
trunk/Geometry/CircularNeighbourTable.h (+118/-0)
trunk/Geometry/CircularNeighbourTable.hpp (+322/-0)
trunk/Geometry/ClosePackBlock.cpp (+15/-0)
trunk/Geometry/ClosePackBlock.h (+89/-0)
trunk/Geometry/ClosePackBlock.hpp (+119/-0)
trunk/Geometry/ClosePackIterator.cpp (+35/-0)
trunk/Geometry/ClosePackIterator.h (+129/-0)
trunk/Geometry/ClosePackIterator.hpp (+196/-0)
trunk/Geometry/ClosePackOrientation.h (+38/-0)
trunk/Geometry/Corner.cpp (+122/-0)
trunk/Geometry/Corner.h (+64/-0)
trunk/Geometry/Corner2D.cpp (+130/-0)
trunk/Geometry/Corner2D.h (+57/-0)
trunk/Geometry/CubicBlock.cpp (+15/-0)
trunk/Geometry/CubicBlock.h (+44/-0)
trunk/Geometry/CubicBlock.hpp (+35/-0)
trunk/Geometry/CubicBlockIterator.cpp (+21/-0)
trunk/Geometry/CubicBlockIterator.h (+62/-0)
trunk/Geometry/CubicBlockIterator.hpp (+109/-0)
trunk/Geometry/CubicBoxPacker.cpp (+14/-0)
trunk/Geometry/CubicBoxPacker.h (+81/-0)
trunk/Geometry/CubicBoxPacker.hpp (+126/-0)
trunk/Geometry/DistConnections.cpp (+14/-0)
trunk/Geometry/DistConnections.h (+165/-0)
trunk/Geometry/DistConnections.hpp (+275/-0)
trunk/Geometry/Edge.cpp (+189/-0)
trunk/Geometry/Edge.h (+58/-0)
trunk/Geometry/Edge2D.cpp (+164/-0)
trunk/Geometry/Edge2D.h (+79/-0)
trunk/Geometry/FaultedBlock2d.cpp (+251/-0)
trunk/Geometry/FaultedBlock2d.h (+55/-0)
trunk/Geometry/GeometryInfo.cpp (+333/-0)
trunk/Geometry/GeometryInfo.h (+128/-0)
trunk/Geometry/Geometry_dll.h (+14/-0)
trunk/Geometry/GougeBlock3D.cpp (+888/-0)
trunk/Geometry/GougeBlock3D.h (+288/-0)
trunk/Geometry/GougeConfig.cpp (+14/-0)
trunk/Geometry/GougeConfig.h (+520/-0)
trunk/Geometry/GougeConfig.hpp (+1153/-0)
trunk/Geometry/Grain.cpp (+14/-0)
trunk/Geometry/Grain.h (+64/-0)
trunk/Geometry/Grain.hpp (+90/-0)
trunk/Geometry/GrainCollection.cpp (+14/-0)
trunk/Geometry/GrainCollection.h (+162/-0)
trunk/Geometry/GrainCollection.hpp (+154/-0)
trunk/Geometry/GrainRandomBoxPacker.cpp (+14/-0)
trunk/Geometry/GrainRandomBoxPacker.h (+121/-0)
trunk/Geometry/GrainRandomBoxPacker.hpp (+217/-0)
trunk/Geometry/GranularGougeBlock3D.cpp (+193/-0)
trunk/Geometry/GranularGougeBlock3D.h (+68/-0)
trunk/Geometry/GridIterator.cpp (+52/-0)
trunk/Geometry/GridIterator.h (+286/-0)
trunk/Geometry/HexagBlock.cpp (+15/-0)
trunk/Geometry/HexagBlock.h (+43/-0)
trunk/Geometry/HexagBlock.hpp (+35/-0)
trunk/Geometry/HexagBlockIterator.cpp (+21/-0)
trunk/Geometry/HexagBlockIterator.h (+62/-0)
trunk/Geometry/HexagBlockIterator.hpp (+79/-0)
trunk/Geometry/IntersectionVolCalculator.cpp (+22/-0)
trunk/Geometry/IntersectionVolCalculator.h (+238/-0)
trunk/Geometry/IntersectionVolCalculator.hpp (+1188/-0)
trunk/Geometry/LayeredBlock.cpp (+45/-0)
trunk/Geometry/LayeredBlock.h (+45/-0)
trunk/Geometry/Line.cpp (+33/-0)
trunk/Geometry/Line.h (+41/-0)
trunk/Geometry/LineSegment.cpp (+84/-0)
trunk/Geometry/LineSegment.h (+43/-0)
trunk/Geometry/Makefile.am (+75/-0)
trunk/Geometry/NeighbourTable.cpp (+21/-0)
trunk/Geometry/NeighbourTable.h (+118/-0)
trunk/Geometry/NeighbourTable.hpp (+327/-0)
trunk/Geometry/Packer.cpp (+14/-0)
trunk/Geometry/Packer.h (+98/-0)
trunk/Geometry/Packer.hpp (+156/-0)
trunk/Geometry/PackerGenerators.cpp (+14/-0)
trunk/Geometry/PackerGenerators.h (+180/-0)
trunk/Geometry/PackerGenerators.hpp (+209/-0)
trunk/Geometry/PaddedBlock3D.cpp (+247/-0)
trunk/Geometry/PaddedBlock3D.h (+44/-0)
trunk/Geometry/ParticleCollection.cpp (+15/-0)
trunk/Geometry/ParticleCollection.h (+169/-0)
trunk/Geometry/ParticleCollection.hpp (+154/-0)
trunk/Geometry/ParticleComparer.cpp (+14/-0)
trunk/Geometry/ParticleComparer.h (+40/-0)
trunk/Geometry/ParticleComparer.hpp (+47/-0)
trunk/Geometry/ParticleFitter.cpp (+22/-0)
trunk/Geometry/ParticleFitter.h (+514/-0)
trunk/Geometry/ParticleGenerator.cpp (+60/-0)
trunk/Geometry/ParticleGenerator.h (+56/-0)
trunk/Geometry/Plane.cpp (+100/-0)
trunk/Geometry/Plane.h (+66/-0)
trunk/Geometry/PointCloud.cpp (+109/-0)
trunk/Geometry/PointCloud.h (+48/-0)
trunk/Geometry/RandomAssembly2D.cpp (+230/-0)
trunk/Geometry/RandomAssembly2D.h (+62/-0)
trunk/Geometry/RandomAssembly3D.cpp (+247/-0)
trunk/Geometry/RandomAssembly3D.h (+62/-0)
trunk/Geometry/RandomBlock.cpp (+247/-0)
trunk/Geometry/RandomBlock.h (+62/-0)
trunk/Geometry/RandomBlock3D.cpp (+269/-0)
trunk/Geometry/RandomBlock3D.h (+66/-0)
trunk/Geometry/RandomBlockGenerator.cpp (+229/-0)
trunk/Geometry/RandomBlockGenerator.h (+86/-0)
trunk/Geometry/RandomBoxPacker.cpp (+14/-0)
trunk/Geometry/RandomBoxPacker.h (+190/-0)
trunk/Geometry/RandomBoxPacker.hpp (+501/-0)
trunk/Geometry/RandomSpherePacker.cpp (+14/-0)
trunk/Geometry/RandomSpherePacker.h (+179/-0)
trunk/Geometry/RandomSpherePacker.hpp (+412/-0)
trunk/Geometry/RectPatch.cpp (+103/-0)
trunk/Geometry/RectPatch.h (+39/-0)
trunk/Geometry/RegularBlockGenerator.cpp (+53/-0)
trunk/Geometry/RegularBlockGenerator.h (+53/-0)
trunk/Geometry/RoughPaddedBlock3d.cpp (+229/-0)
trunk/Geometry/RoughPaddedBlock3d.h (+56/-0)
trunk/Geometry/SimpleBlock.cpp (+15/-0)
trunk/Geometry/SimpleBlock.h (+95/-0)
trunk/Geometry/SimpleBlock.hpp (+134/-0)
trunk/Geometry/SimpleNTable.cpp (+250/-0)
trunk/Geometry/SimpleNTable.h (+86/-0)
trunk/Geometry/SimpleNTable3D.cpp (+248/-0)
trunk/Geometry/SimpleNTable3D.h (+81/-0)
trunk/Geometry/SimpleParticle.cpp (+17/-0)
trunk/Geometry/SimpleParticle.h (+79/-0)
trunk/Geometry/SimpleParticle.hpp (+128/-0)
trunk/Geometry/SimpleParticleData.cpp (+180/-0)
trunk/Geometry/SimpleParticleData.h (+92/-0)
trunk/Geometry/SimpleParticleData.hpp (+195/-0)
trunk/Geometry/SphAggGougeBlock.cpp (+266/-0)
trunk/Geometry/SphAggGougeBlock.h (+86/-0)
trunk/Geometry/SphAggGougeBlock.hpp (+50/-0)
trunk/Geometry/Sphere.h (+40/-0)
trunk/Geometry/Sphere2d.cpp (+239/-0)
trunk/Geometry/Sphere2d.h (+43/-0)
trunk/Geometry/Sphere3d.cpp (+210/-0)
trunk/Geometry/Sphere3d.h (+39/-0)
trunk/Geometry/SphereBlockGenerator.cpp (+351/-0)
trunk/Geometry/SphereBlockGenerator.h (+75/-0)
trunk/Geometry/SphereBoxVolCalculator.cpp (+21/-0)
trunk/Geometry/SphereBoxVolCalculator.h (+49/-0)
trunk/Geometry/SphereFitter.cpp (+14/-0)
trunk/Geometry/SphereFitter.h (+749/-0)
trunk/Geometry/SphereFitter.hpp (+19/-0)
trunk/Geometry/SphereNeighbours.cpp (+14/-0)
trunk/Geometry/SphereNeighbours.h (+153/-0)
trunk/Geometry/SphereNeighbours.hpp (+276/-0)
trunk/Geometry/SplitBlock.cpp (+94/-0)
trunk/Geometry/SplitBlock.h (+40/-0)
trunk/Geometry/SplitBlock3D.cpp (+158/-0)
trunk/Geometry/SplitBlock3D.h (+42/-0)
trunk/Geometry/Triangle.cpp (+317/-0)
trunk/Geometry/Triangle.h (+98/-0)
trunk/Geometry/Vec3L.cpp (+21/-0)
trunk/Geometry/Vec3L.h (+165/-0)
trunk/Geometry/VtkXmlWriter.cpp (+346/-0)
trunk/Geometry/vtkxmlwriter.h (+100/-0)
trunk/INSTALL (+15/-0)
trunk/MainBE/CMakeLists.txt (+54/-0)
trunk/MainBE/Makefile.am (+36/-0)
trunk/MainBE/Worker.cpp (+83/-0)
trunk/MainBE/version.h (+21/-0)
trunk/Makefile.am (+22/-0)
trunk/Model/ABCDamping.h (+50/-0)
trunk/Model/ABCDamping.hpp (+96/-0)
trunk/Model/ABCDampingIGP.cpp (+63/-0)
trunk/Model/ABCDampingIGP.h (+45/-0)
trunk/Model/AdhesiveFriction.cpp (+124/-0)
trunk/Model/AdhesiveFriction.h (+66/-0)
trunk/Model/BCorner2DInteraction.cpp (+140/-0)
trunk/Model/BCorner2DInteraction.h (+63/-0)
trunk/Model/BEdge2DInteraction.cpp (+116/-0)
trunk/Model/BEdge2DInteraction.h (+68/-0)
trunk/Model/BMesh2DIP.h (+74/-0)
trunk/Model/BMesh2DInteraction.h (+35/-0)
trunk/Model/BMesh2DInteractionCpData.cpp (+63/-0)
trunk/Model/BMesh2DInteractionCpData.h (+57/-0)
trunk/Model/BTriMeshIP.cpp (+91/-0)
trunk/Model/BTriMeshIP.h (+89/-0)
trunk/Model/BTriMeshInteraction.h (+32/-0)
trunk/Model/BTriMeshInteractionCpData.cpp (+80/-0)
trunk/Model/BTriMeshInteractionCpData.h (+43/-0)
trunk/Model/BTriangleInteraction.cpp (+116/-0)
trunk/Model/BTriangleInteraction.h (+69/-0)
trunk/Model/BWallInteraction.cpp (+15/-0)
trunk/Model/BWallInteraction.h (+46/-0)
trunk/Model/BWallInteraction.hpp (+62/-0)
trunk/Model/BWallInteractionGroup.cpp (+67/-0)
trunk/Model/BWallInteractionGroup.h (+91/-0)
trunk/Model/BWallInteractionGroup.hpp (+197/-0)
trunk/Model/BasicParticle.cpp (+46/-0)
trunk/Model/BasicParticle.h (+81/-0)
trunk/Model/BodyForceGroup.cpp (+63/-0)
trunk/Model/BodyForceGroup.h (+119/-0)
trunk/Model/BodyForceGroup.hpp (+66/-0)
trunk/Model/BondedInteraction.cpp (+311/-0)
trunk/Model/BondedInteraction.h (+128/-0)
trunk/Model/BondedInteractionCpData.cpp (+100/-0)
trunk/Model/BondedInteractionCpData.h (+69/-0)
trunk/Model/CMakeLists.txt (+360/-0)
trunk/Model/CMakeLists.txt.bk (+397/-0)
trunk/Model/CappedBondedInteraction.cpp (+189/-0)
trunk/Model/CappedBondedInteraction.h (+93/-0)
trunk/Model/Damping.h (+88/-0)
trunk/Model/Damping.hpp (+225/-0)
trunk/Model/DampingIGP.cpp (+75/-0)
trunk/Model/DampingIGP.h (+63/-0)
trunk/Model/ECorner2DInteraction.cpp (+60/-0)
trunk/Model/ECorner2DInteraction.h (+50/-0)
trunk/Model/ECornerInteraction.cpp (+67/-0)
trunk/Model/ECornerInteraction.h (+51/-0)
trunk/Model/EEdge2DInteraction.cpp (+65/-0)
trunk/Model/EEdge2DInteraction.h (+49/-0)
trunk/Model/EEdgeInteraction.cpp (+74/-0)
trunk/Model/EEdgeInteraction.h (+49/-0)
trunk/Model/EMesh2DInteraction.h (+27/-0)
trunk/Model/ETriMeshIP.h (+72/-0)
trunk/Model/ETriMeshInteraction.h (+30/-0)
trunk/Model/ETriangleInteraction.cpp (+69/-0)
trunk/Model/ETriangleInteraction.h (+52/-0)
trunk/Model/EWallInteraction.cpp (+15/-0)
trunk/Model/EWallInteraction.h (+47/-0)
trunk/Model/EWallInteraction.hpp (+112/-0)
trunk/Model/EWallInteractionGroup.cpp (+62/-0)
trunk/Model/EWallInteractionGroup.h (+84/-0)
trunk/Model/EWallInteractionGroup.hpp (+165/-0)
trunk/Model/ElasticInteraction.cpp (+171/-0)
trunk/Model/ElasticInteraction.h (+86/-0)
trunk/Model/ElasticInteractionGroup.cpp (+33/-0)
trunk/Model/ElasticInteractionGroup.h (+60/-0)
trunk/Model/ElasticInteractionGroup.hpp (+139/-0)
trunk/Model/FractalFriction.cpp (+218/-0)
trunk/Model/FractalFriction.h (+78/-0)
trunk/Model/FrictionInteraction.cpp (+669/-0)
trunk/Model/FrictionInteraction.h (+123/-0)
trunk/Model/HertzianElasticInteraction.cpp (+137/-0)
trunk/Model/HertzianElasticInteraction.h (+74/-0)
trunk/Model/HertzianViscoElasticFrictionInteraction.cpp (+745/-0)
trunk/Model/HertzianViscoElasticFrictionInteraction.h (+154/-0)
trunk/Model/HertzianViscoElasticInteraction.cpp (+182/-0)
trunk/Model/HertzianViscoElasticInteraction.h (+86/-0)
trunk/Model/IGParam.cpp (+31/-0)
trunk/Model/IGParam.h (+53/-0)
trunk/Model/Interaction.cpp (+97/-0)
trunk/Model/Interaction.h (+118/-0)
trunk/Model/InteractionGroup.h (+73/-0)
trunk/Model/InteractionGroup.hpp (+17/-0)
trunk/Model/InteractionParam.cpp (+35/-0)
trunk/Model/InteractionParam.h (+46/-0)
trunk/Model/LinearDashpotInteraction.cpp (+133/-0)
trunk/Model/LinearDashpotInteraction.h (+74/-0)
trunk/Model/LocalDamping.h (+81/-0)
trunk/Model/LocalDamping.hpp (+218/-0)
trunk/Model/LocalDampingIGP.cpp (+66/-0)
trunk/Model/LocalDampingIGP.h (+55/-0)
trunk/Model/Makefile.am (+185/-0)
trunk/Model/Mesh2D.cpp (+251/-0)
trunk/Model/Mesh2D.h (+85/-0)
trunk/Model/Mesh2D.hpp (+51/-0)
trunk/Model/MeshData.cpp (+119/-0)
trunk/Model/MeshData.h (+54/-0)
trunk/Model/MeshData2D.cpp (+95/-0)
trunk/Model/MeshData2D.h (+53/-0)
trunk/Model/Particle.cpp (+499/-0)
trunk/Model/Particle.h (+193/-0)
trunk/Model/RotBondedInteraction.cpp (+684/-0)
trunk/Model/RotBondedInteraction.h (+174/-0)
trunk/Model/RotDamping.h (+84/-0)
trunk/Model/RotDamping.hpp (+185/-0)
trunk/Model/RotElasticInteraction.cpp (+188/-0)
trunk/Model/RotElasticInteraction.h (+91/-0)
trunk/Model/RotElasticInteractionGroup.cpp (+50/-0)
trunk/Model/RotElasticInteractionGroup.h (+59/-0)
trunk/Model/RotElasticInteractionGroup.hpp (+131/-0)
trunk/Model/RotFricInteraction.cpp (+580/-0)
trunk/Model/RotFricInteraction.h (+154/-0)
trunk/Model/RotLocalDamping.h (+81/-0)
trunk/Model/RotLocalDamping.hpp (+218/-0)
trunk/Model/RotPairInteraction.cpp (+70/-0)
trunk/Model/RotPairInteraction.h (+73/-0)
trunk/Model/RotParticle.cpp (+502/-0)
trunk/Model/RotParticle.h (+241/-0)
trunk/Model/RotParticleVi.cpp (+598/-0)
trunk/Model/RotParticleVi.h (+246/-0)
trunk/Model/RotThermBondedInteraction.cpp (+1005/-0)
trunk/Model/RotThermBondedInteraction.h (+160/-0)
trunk/Model/RotThermElasticInteraction.cpp (+244/-0)
trunk/Model/RotThermElasticInteraction.h (+106/-0)
trunk/Model/RotThermElasticInteractionGroup.cpp (+55/-0)
trunk/Model/RotThermElasticInteractionGroup.h (+54/-0)
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To merge this branch: bzr merge lp:esys-particle/esys-particle-win
Reviewer Review Type Date Requested Status
Dion Weatherley Disapprove
Review via email: mp+162941@code.launchpad.net
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Revision history for this message
Dion Weatherley (d-weatherley) wrote :

The Windows port of ESyS-Particle is still experimental and not yet approved for merging with the main development trunk. Further benchmarking and validation testing is required prior to consideration for incorporation in the trunk.

review: Disapprove
Revision history for this message
Anton Gladky (gladky-anton) wrote :

Hi Dion,

is it possible to merge CMakeLists.txt files from windows-branch? I
started to write it myself, but then found windows-port with the same
files. I think it would be good, if we merge only those files.

But it is up to you, of course.

Anton

PS Actually, esys-particle is available in main archive of new released
Debian Wheezy.
http://packages.qa.debian.org/e/esys-particle.html

2013/5/8 Dion Weatherley <email address hidden>:
> The proposal to merge lp:esys-particle/esys-particle-win into lp:esys-particle has been updated.
>
> Status: Needs review => Rejected
>
> For more details, see:
> https://code.launchpad.net/~esys-p-dev/esys-particle/esys-particle-win/+merge/162941
> --
> https://code.launchpad.net/~esys-p-dev/esys-particle/esys-particle-win/+merge/162941
> You are subscribed to branch lp:esys-particle.

Revision history for this message
Feng Chen (fchen3-gmail) wrote :

Hi, All:

0. Personally I do not think there will be much difference between the windows and Linux version, the major differences are some platform dependent calls.
1. Can we call for volunteers to make comparisons of results between the windows version and Linux version?
2. Parallel version in windows version might work..., at least for the direct shear test in ESyS-Particle manual
3. We might start to work on this merge-migration since this will quickly benefit entire group of ESyS-Particle users/developers
4. Can we make a list-to-do for necessary steps in order to do the migration?

Feng

Revision history for this message
Anton Gladky (gladky-anton) wrote :

Hi

2013/5/8 Feng Chen <email address hidden>:
> 0. Personally I do not think there will be much difference between the windows and Linux version, the major differences are some platform dependent calls.

Linux version is not functional yet. I did not finish that. So, if
Windows-one works, we can use it.

Anton

Revision history for this message
Feng Chen (fchen3-gmail) wrote :

Hi, Anton:

Do you mean CMake only? I believe use CMake in the Linux version should not be very different from the windows version.

Feng

Revision history for this message
Anton Gladky (gladky-anton) wrote :

2013/5/8 Feng Chen <email address hidden>

> Do you mean CMake only? I believe use CMake in the Linux version should
> not be very different from the windows version.
>
Yes, but linux-version of cmake for esys-particle is not ready yet.

Anton

Revision history for this message
Dion Weatherley (d-weatherley) wrote :

Hi Feng and Anton,

Just to be clear, I am very supportive of merging of the two branches but feel it should be done carefully and systematically. Here are a few of my thoughts:

> 0. [...] the major differences are some platform dependent calls.

Feng, could you please provide a list/description of the changes you had to make to the core trunk source code, aside from the switch to CMake build system?

> 1. Can we call for volunteers to make comparisons of results between the windows version and Linux version?
> 2. Parallel version in windows version might work...

Certainly would be nice to have someone do systematic comparisons and testing. Any volunteers or suggestions on who may have time for this?

> 4. Can we make a list-to-do for necessary steps in order to do the migration?

This is a good starting point. Top of the list would be to ascertain whether the esys-particle-win CMake build system will work under linux. Perhaps someone could try building esys-particle-win on ubuntu and see how far we get?

I've created a Blueprint for this merge discussion:
https://blueprints.launchpad.net/esys-particle/+spec/esys-p-win-merge
Let's move our discussions to there and start populating a to-do list under "Work Items".

Cheers,

Dion

Unmerged revisions

8. By Feng Chen

Modified BuildInstructions.docx and BuildInstructions.pdf in section 2.3.1, added screenshot for "Open Visual Studio Command Prompt" (Figure 2)

7. By Feng Chen

fix cmake command, minor change in CMakeLists.txt for VS2010 solution file generation

6. By Feng Chen <email address hidden> <email address hidden>

update build instructions

5. By Feng Chen

change to NMake Makefiles

4. By Feng Chen

Updated BuildInstructions.pdf, removed ReleaseNotes, this file is the same file as in the gengeo-win

3. By Feng Chen

first comit

2. By Feng Chen

first release of esys-particle-win

1. By Feng Chen

test

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1=== added directory 'trunk'
2=== added file 'trunk/AUTHORS'
3--- trunk/AUTHORS 1970-01-01 00:00:00 +0000
4+++ trunk/AUTHORS 2013-05-08 08:43:26 +0000
5@@ -0,0 +1,33 @@
6+#############################################################
7+## ##
8+## Copyright (c) 2003-2011 by The University of Queensland ##
9+## Earth Systems Science Computational Centre (ESSCC) ##
10+## http://www.uq.edu.au/esscc ##
11+## ##
12+## Primary Business: Brisbane, Queensland, Australia ##
13+## Licensed under the Open Software License version 3.0 ##
14+## http://www.opensource.org/licenses/osl-3.0.php ##
15+## ##
16+#############################################################
17+
18+ESyS-Particle is a community Open Source Software project.
19+
20+ESyS-Particle software contributors include:
21+
22+S. Abe (2000-)
23+C. Altinay (2008-)
24+V. Boros (2009-)
25+F. Chen (2010)
26+M. Griffa (2011)
27+W. Hancock (2008-)
28+L. Heredia (2009)
29+S. Latham (2005-2007)
30+P. Mora (1994-)
31+W. Pettersson (2008-2011)
32+D. Place (1994-2002)
33+P. Richeri (2009)
34+G. Tancredi (2009)
35+Y. Wang (2002-2008)
36+D. Weatherley (2007-)
37+
38+For further information about ESyS-Particle authors, email d.weatherley@uq.edu.au
39
40=== added file 'trunk/BuildInstructions.pdf'
41Binary files trunk/BuildInstructions.pdf 1970-01-01 00:00:00 +0000 and trunk/BuildInstructions.pdf 2013-05-08 08:43:26 +0000 differ
42=== added file 'trunk/CMakeLists.txt'
43--- trunk/CMakeLists.txt 1970-01-01 00:00:00 +0000
44+++ trunk/CMakeLists.txt 2013-05-08 08:43:26 +0000
45@@ -0,0 +1,89 @@
46+cmake_minimum_required(VERSION 2.6)
47+
48+project(ESyS-Particle-v2.1)
49+
50+set(CMAKE_BUILD_TYPE Release)
51+
52+# set(TOP_SRC_DIR "C:/SVWork/DEMDev/ESyS-Particle-2.1_vc9")
53+set(TOP_SRC_DIR ${CMAKE_CURRENT_SOURCE_DIR})
54+# set(TOP_BUILD_DIR ${TOP_SRC_DIR}/build)
55+set(TOP_BUILD_DIR ${CMAKE_CURRENT_BINARY_DIR})
56+
57+set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${TOP_BUILD_DIR}/output)
58+set(LIBRARY_OUTPUT_PATH ${TOP_BUILD_DIR}/lib)
59+set(EXECUTABLE_OUTPUT_PATH ${TOP_BUILD_DIR}/exe)
60+
61+set(OMPI_INCLUDES "C:/Program Files (x86)/OpenMPI_v1.5.3-win32/include")
62+set(OMPI_LIB_PATH "C:/Program Files (x86)/OpenMPI_v1.5.3-win32/lib")
63+set(OMPI_CORE_LIBS "libmpi.lib" "libmpi_cxx.lib" "libopen-pal.lib" "libopen-rte.lib")
64+
65+# set(PYTHON_INCLUDES "C:/Python27/include")
66+# set(PYTHON_LIB_PATH "C:/Python27/libs")
67+
68+set(PYTHON_INCLUDES "C:/Python-2.7.2/Include" "C:/Python-2.7.2/PC")
69+set(PYTHON_LIB_PATH "C:/Python-2.7.2/PCbuild")
70+
71+set(BOOST_INCLUDES "C:/Program Files (x86)/boost/boost_1_47")
72+set(BOOST_LIB_PATH "C:/Program Files (x86)/boost/boost_1_47/lib")
73+
74+SET(ESYS_INCLUDES
75+ ${TOP_SRC_DIR}/Foundation
76+ ${TOP_SRC_DIR}/Geometry
77+ ${TOP_SRC_DIR}/Parallel
78+ ${TOP_SRC_DIR}/Model
79+ ${TOP_SRC_DIR}/pis
80+ )
81+SET(ESYS_LIB_PATH )
82+
83+cmake_policy(SET CMP0015 OLD)
84+
85+ADD_DEFINITIONS(-DWIN32 -DWINDOWS)
86+ADD_DEFINITIONS(-DNOMINMAX -D_USE_MATH_DEFINES -D_CRT_SECURE_NO_WARNINGS)
87+ADD_DEFINITIONS(-wd4251 -wd4244 -wd4800 -wd4305 -wd4819 -wd4101)
88+ADD_DEFINITIONS(-DOMPI_IMPORTS -DOPAL_IMPORTS -DORTE_IMPORTS)
89+
90+include_directories(${TOP_SRC_DIR} ${OMPI_INCLUDES} ${BOOST_INCLUDES} ${ESYS_INCLUDES} ${PYTHON_INCLUDES})
91+link_directories(${OMPI_LIB_PATH} ${BOOST_LIB_PATH} ${ESYS_LIB_PATH} ${PYTHON_LIB_PATH})
92+
93+add_subdirectory(Foundation)
94+add_subdirectory(Geometry)
95+add_subdirectory(tml)
96+add_subdirectory(ntable)
97+add_subdirectory(ppa)
98+add_subdirectory(pis)
99+add_subdirectory(Fields)
100+add_subdirectory(ParallelModel)
101+add_subdirectory(MainBE)
102+add_subdirectory(Python)
103+add_subdirectory(Tools)
104+
105+
106+########### install files ###############
107+
108+
109+
110+
111+#original Makefile.am contents follow:
112+
113+##############################################################
114+### ##
115+### Copyright (c) 2003-2011 by The University of Queensland ##
116+### Earth Systems Science Computational Centre (ESSCC) ##
117+### http://www.uq.edu.au/esscc ##
118+### ##
119+### Primary Business: Brisbane, Queensland, Australia ##
120+### Licensed under the Open Software License version 3.0 ##
121+### http://www.opensource.org/licenses/osl-3.0.php ##
122+### ##
123+##############################################################
124+#
125+###
126+#
127+#include $(top_srcdir)/Config/Cpp.am
128+#
129+#SUBDIRS = libltdl Foundation ntable tml ppa pis Geometry Model Fields Parallel MainBE Tools Python
130+#
131+#ACLOCAL_AMFLAGS = -I Config
132+#
133+#EXTRA_DIST = Config/pkg.m4 Config/cppunit.m4 Config/libtool.m4
134+#
135
136=== added file 'trunk/COPYING'
137--- trunk/COPYING 1970-01-01 00:00:00 +0000
138+++ trunk/COPYING 2013-05-08 08:43:26 +0000
139@@ -0,0 +1,11 @@
140+#############################################################
141+## ##
142+## Copyright (c) 2003-2011 by The University of Queensland ##
143+## Earth Systems Science Computational Centre (ESSCC) ##
144+## http://www.uq.edu.au/esscc ##
145+## ##
146+## Primary Business: Brisbane, Queensland, Australia ##
147+## Licensed under the Open Software License version 3.0 ##
148+## http://www.opensource.org/licenses/osl-3.0.php ##
149+## ##
150+#############################################################
151
152=== added file 'trunk/COPYRIGHT'
153--- trunk/COPYRIGHT 1970-01-01 00:00:00 +0000
154+++ trunk/COPYRIGHT 2013-05-08 08:43:26 +0000
155@@ -0,0 +1,11 @@
156+#############################################################
157+## ##
158+## Copyright (c) 2003-2011 by The University of Queensland ##
159+## Earth Systems Science Computational Centre (ESSCC) ##
160+## http://www.uq.edu.au/esscc ##
161+## ##
162+## Primary Business: Brisbane, Queensland, Australia ##
163+## Licensed under the Open Software License version 3.0 ##
164+## http://www.opensource.org/licenses/osl-3.0.php ##
165+## ##
166+#############################################################
167
168=== added file 'trunk/ChangeLog'
169--- trunk/ChangeLog 1970-01-01 00:00:00 +0000
170+++ trunk/ChangeLog 2013-05-08 08:43:26 +0000
171@@ -0,0 +1,15 @@
172+#############################################################
173+## ##
174+## Copyright (c) 2003-2011 by The University of Queensland ##
175+## Earth Systems Science Computational Centre (ESSCC) ##
176+## http://www.uq.edu.au/esscc ##
177+## ##
178+## Primary Business: Brisbane, Queensland, Australia ##
179+## Licensed under the Open Software License version 3.0 ##
180+## http://www.opensource.org/licenses/osl-3.0.php ##
181+## ##
182+#############################################################
183+
184+For information on source code changes, please visit the
185+ESyS-Particle SVN repository browser:
186+https://svn.esscc.uq.edu.au/listing.php?repname=esys3++(contains+Esys-particle)&path=%2Flsm%2F&rev=0&sc=0
187
188=== added directory 'trunk/Config'
189=== added file 'trunk/Config/Cpp.am'
190--- trunk/Config/Cpp.am 1970-01-01 00:00:00 +0000
191+++ trunk/Config/Cpp.am 2013-05-08 08:43:26 +0000
192@@ -0,0 +1,14 @@
193+#############################################################
194+## ##
195+## Copyright (c) 2003-2011 by The University of Queensland ##
196+## Earth Systems Science Computational Centre (ESSCC) ##
197+## http://www.uq.edu.au/esscc ##
198+## ##
199+## Primary Business: Brisbane, Queensland, Australia ##
200+## Licensed under the Open Software License version 3.0 ##
201+## http://www.opensource.org/licenses/osl-3.0.php ##
202+## ##
203+#############################################################
204+
205+AM_CPPFLAGS = "-I$(top_srcdir)" $(BOOST_CPPFLAGS)
206+AM_LDFLAGS = -release $(PACKAGE_VERSION)
207\ No newline at end of file
208
209=== added file 'trunk/Config/Python.am'
210--- trunk/Config/Python.am 1970-01-01 00:00:00 +0000
211+++ trunk/Config/Python.am 2013-05-08 08:43:26 +0000
212@@ -0,0 +1,45 @@
213+#############################################################
214+## ##
215+## Copyright (c) 2003-2011 by The University of Queensland ##
216+## Earth Systems Science Computational Centre (ESSCC) ##
217+## http://www.uq.edu.au/esscc ##
218+## ##
219+## Primary Business: Brisbane, Queensland, Australia ##
220+## Licensed under the Open Software License version 3.0 ##
221+## http://www.opensource.org/licenses/osl-3.0.php ##
222+## ##
223+#############################################################
224+
225+##
226+#
227+# Begin $(top_srcdir)/Config/Python.am
228+#
229+##
230+include $(top_srcdir)/Config/Cpp.am
231+
232+lsmdatadocdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)
233+pythonapidocdir = $(lsmdatadocdir)/pythonapi
234+
235+esysdir = $(pythondir)/esys
236+lsmdir = $(esysdir)/lsm
237+
238+lsmdocdir = $(lsmdir)/doc
239+lsmbenchmarksdir = $(lsmdir)/benchmarks
240+lsmbenchmarkscompressdir = $(lsmbenchmarksdir)/compress
241+lsmbenchmarksgouge2ddir = $(lsmbenchmarksdir)/gouge2d
242+lsmexamplesdir = $(lsmdir)/examples
243+lsmexamplessimpledir = $(lsmexamplesdir)/simple
244+lsmexampleswavepropdir= $(lsmexamplesdir)/waveprop
245+lsmtoolsdir = $(lsmdir)/tools
246+lsmutildir = $(lsmdir)/util
247+lsmgeometrydir = $(lsmdir)/geometry
248+lsmsimdir = $(lsmdir)/sim
249+lsmsimcoupleddir = $(lsmsimdir)/coupled
250+lsmvisdir = $(lsmdir)/vis
251+lsmviscoredir = $(lsmvisdir)/core
252+lsmvisvtkdir = $(lsmvisdir)/vtk
253+lsmvispovraydir = $(lsmvisdir)/povray
254+
255+PYTHON_DLL_EXT = .so
256+
257+AM_CPPFLAGS += $(PYTHON_CPPFLAGS)
258
259=== added file 'trunk/Config/ax_boost_base.m4'
260--- trunk/Config/ax_boost_base.m4 1970-01-01 00:00:00 +0000
261+++ trunk/Config/ax_boost_base.m4 2013-05-08 08:43:26 +0000
262@@ -0,0 +1,219 @@
263+# ===========================================================================
264+# http://www.nongnu.org/autoconf-archive/ax_boost_base.html
265+# ===========================================================================
266+#
267+# SYNOPSIS
268+#
269+# AX_BOOST_BASE([MINIMUM-VERSION])
270+#
271+# DESCRIPTION
272+#
273+# Test for the Boost C++ libraries of a particular version (or newer)
274+#
275+# If no path to the installed boost library is given the macro searchs
276+# under /usr, /usr/local, /opt and /opt/local and evaluates the
277+# $BOOST_ROOT environment variable. Further documentation is available at
278+# <http://randspringer.de/boost/index.html>.
279+#
280+# This macro calls:
281+#
282+# AC_SUBST(BOOST_CPPFLAGS) / AC_SUBST(BOOST_LDFLAGS)
283+#
284+# And sets:
285+#
286+# HAVE_BOOST
287+#
288+# LICENSE
289+#
290+# Copyright (c) 2008 Thomas Porschberg <thomas@randspringer.de>
291+#
292+# Copying and distribution of this file, with or without modification, are
293+# permitted in any medium without royalty provided the copyright notice
294+# and this notice are preserved.
295+
296+AC_DEFUN([AX_BOOST_BASE],
297+[
298+AC_ARG_WITH([boost],
299+ AS_HELP_STRING([--with-boost@<:@=DIR@:>@], [use boost (default is yes) - it is possible to specify the root directory for boost (optional)]),
300+ [
301+ if test "$withval" = "no"; then
302+ want_boost="no"
303+ elif test "$withval" = "yes"; then
304+ want_boost="yes"
305+ ac_boost_path=""
306+ else
307+ want_boost="yes"
308+ ac_boost_path="$withval"
309+ fi
310+ ],
311+ [want_boost="yes"])
312+
313+
314+AC_ARG_WITH([boost-libdir],
315+ AS_HELP_STRING([--with-boost-libdir=LIB_DIR],
316+ [Force given directory for boost libraries. Note that this will overwrite library path detection, so use this parameter only if default library detection fails and you know exactly where your boost libraries are located.]),
317+ [
318+ if test -d $withval
319+ then
320+ ac_boost_lib_path="$withval"
321+ else
322+ AC_MSG_ERROR(--with-boost-libdir expected directory name)
323+ fi
324+ ],
325+ [ac_boost_lib_path=""]
326+)
327+
328+if test "x$want_boost" = "xyes"; then
329+ boost_lib_version_req=ifelse([$1], ,1.20.0,$1)
330+ boost_lib_version_req_shorten=`expr $boost_lib_version_req : '\([[0-9]]*\.[[0-9]]*\)'`
331+ boost_lib_version_req_major=`expr $boost_lib_version_req : '\([[0-9]]*\)'`
332+ boost_lib_version_req_minor=`expr $boost_lib_version_req : '[[0-9]]*\.\([[0-9]]*\)'`
333+ boost_lib_version_req_sub_minor=`expr $boost_lib_version_req : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
334+ if test "x$boost_lib_version_req_sub_minor" = "x" ; then
335+ boost_lib_version_req_sub_minor="0"
336+ fi
337+ WANT_BOOST_VERSION=`expr $boost_lib_version_req_major \* 100000 \+ $boost_lib_version_req_minor \* 100 \+ $boost_lib_version_req_sub_minor`
338+ AC_MSG_CHECKING(for boostlib >= $boost_lib_version_req)
339+ succeeded=no
340+
341+ dnl first we check the system location for boost libraries
342+ dnl this location ist chosen if boost libraries are installed with the --layout=system option
343+ dnl or if you install boost with RPM
344+ if test "$ac_boost_path" != ""; then
345+ BOOST_LDFLAGS="-L$ac_boost_path/lib"
346+ BOOST_CPPFLAGS="-I$ac_boost_path/include"
347+ else
348+ for ac_boost_path_tmp in /usr /usr/local /opt /opt/local ; do
349+ if test -d "$ac_boost_path_tmp/include/boost" && test -r "$ac_boost_path_tmp/include/boost"; then
350+ BOOST_LDFLAGS="-L$ac_boost_path_tmp/lib"
351+ BOOST_CPPFLAGS="-I$ac_boost_path_tmp/include"
352+ break;
353+ fi
354+ done
355+ fi
356+
357+ dnl overwrite ld flags if we have required special directory with
358+ dnl --with-boost-libdir parameter
359+ if test "$ac_boost_lib_path" != ""; then
360+ BOOST_LDFLAGS="-L$ac_boost_lib_path"
361+ fi
362+
363+ CPPFLAGS_SAVED="$CPPFLAGS"
364+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
365+ export CPPFLAGS
366+
367+ LDFLAGS_SAVED="$LDFLAGS"
368+ LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
369+ export LDFLAGS
370+
371+ AC_LANG_PUSH(C++)
372+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
373+ @%:@include <boost/version.hpp>
374+ ]], [[
375+ #if BOOST_VERSION >= $WANT_BOOST_VERSION
376+ // Everything is okay
377+ #else
378+ # error Boost version is too old
379+ #endif
380+ ]])],[
381+ AC_MSG_RESULT(yes)
382+ succeeded=yes
383+ found_system=yes
384+ ],[
385+ ])
386+ AC_LANG_POP([C++])
387+
388+
389+
390+ dnl if we found no boost with system layout we search for boost libraries
391+ dnl built and installed without the --layout=system option or for a staged(not installed) version
392+ if test "x$succeeded" != "xyes"; then
393+ _version=0
394+ if test "$ac_boost_path" != ""; then
395+ if test -d "$ac_boost_path" && test -r "$ac_boost_path"; then
396+ for i in `ls -d $ac_boost_path/include/boost-* 2>/dev/null`; do
397+ _version_tmp=`echo $i | sed "s#$ac_boost_path##" | sed 's/\/include\/boost-//' | sed 's/_/./'`
398+ V_CHECK=`expr $_version_tmp \> $_version`
399+ if test "$V_CHECK" = "1" ; then
400+ _version=$_version_tmp
401+ fi
402+ VERSION_UNDERSCORE=`echo $_version | sed 's/\./_/'`
403+ BOOST_CPPFLAGS="-I$ac_boost_path/include/boost-$VERSION_UNDERSCORE"
404+ done
405+ fi
406+ else
407+ for ac_boost_path in /usr /usr/local /opt /opt/local ; do
408+ if test -d "$ac_boost_path" && test -r "$ac_boost_path"; then
409+ for i in `ls -d $ac_boost_path/include/boost-* 2>/dev/null`; do
410+ _version_tmp=`echo $i | sed "s#$ac_boost_path##" | sed 's/\/include\/boost-//' | sed 's/_/./'`
411+ V_CHECK=`expr $_version_tmp \> $_version`
412+ if test "$V_CHECK" = "1" ; then
413+ _version=$_version_tmp
414+ best_path=$ac_boost_path
415+ fi
416+ done
417+ fi
418+ done
419+
420+ VERSION_UNDERSCORE=`echo $_version | sed 's/\./_/'`
421+ BOOST_CPPFLAGS="-I$best_path/include/boost-$VERSION_UNDERSCORE"
422+ if test "$ac_boost_lib_path" = ""
423+ then
424+ BOOST_LDFLAGS="-L$best_path/lib"
425+ fi
426+
427+ if test "x$BOOST_ROOT" != "x"; then
428+ if test -d "$BOOST_ROOT" && test -r "$BOOST_ROOT" && test -d "$BOOST_ROOT/stage/lib" && test -r "$BOOST_ROOT/stage/lib"; then
429+ version_dir=`expr //$BOOST_ROOT : '.*/\(.*\)'`
430+ stage_version=`echo $version_dir | sed 's/boost_//' | sed 's/_/./g'`
431+ stage_version_shorten=`expr $stage_version : '\([[0-9]]*\.[[0-9]]*\)'`
432+ V_CHECK=`expr $stage_version_shorten \>\= $_version`
433+ if test "$V_CHECK" = "1" -a "$ac_boost_lib_path" = "" ; then
434+ AC_MSG_NOTICE(We will use a staged boost library from $BOOST_ROOT)
435+ BOOST_CPPFLAGS="-I$BOOST_ROOT"
436+ BOOST_LDFLAGS="-L$BOOST_ROOT/stage/lib"
437+ fi
438+ fi
439+ fi
440+ fi
441+
442+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
443+ export CPPFLAGS
444+ LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
445+ export LDFLAGS
446+
447+ AC_LANG_PUSH(C++)
448+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
449+ @%:@include <boost/version.hpp>
450+ ]], [[
451+ #if BOOST_VERSION >= $WANT_BOOST_VERSION
452+ // Everything is okay
453+ #else
454+ # error Boost version is too old
455+ #endif
456+ ]])],[
457+ AC_MSG_RESULT(yes)
458+ succeeded=yes
459+ found_system=yes
460+ ],[
461+ ])
462+ AC_LANG_POP([C++])
463+ fi
464+
465+ if test "$succeeded" != "yes" ; then
466+ if test "$_version" = "0" ; then
467+ AC_MSG_ERROR([[We could not detect the boost libraries (version $boost_lib_version_req_shorten or higher). If you have a staged boost library (still not installed) please specify \$BOOST_ROOT in your environment and do not give a PATH to --with-boost option. If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation.]])
468+ else
469+ AC_MSG_NOTICE([Your boost libraries seem too old (version $_version).])
470+ fi
471+ else
472+ AC_SUBST(BOOST_CPPFLAGS)
473+ AC_SUBST(BOOST_LDFLAGS)
474+ AC_DEFINE(HAVE_BOOST,,[define if the Boost library is available])
475+ fi
476+
477+ CPPFLAGS="$CPPFLAGS_SAVED"
478+ LDFLAGS="$LDFLAGS_SAVED"
479+fi
480+
481+])
482
483=== added file 'trunk/Config/ax_boost_filesystem.m4'
484--- trunk/Config/ax_boost_filesystem.m4 1970-01-01 00:00:00 +0000
485+++ trunk/Config/ax_boost_filesystem.m4 2013-05-08 08:43:26 +0000
486@@ -0,0 +1,112 @@
487+# ===========================================================================
488+# http://www.nongnu.org/autoconf-archive/ax_boost_filesystem.html
489+# ===========================================================================
490+#
491+# SYNOPSIS
492+#
493+# AX_BOOST_FILESYSTEM
494+#
495+# DESCRIPTION
496+#
497+# Test for Filesystem library from the Boost C++ libraries. The macro
498+# requires a preceding call to AX_BOOST_BASE. Further documentation is
499+# available at <http://randspringer.de/boost/index.html>.
500+#
501+# This macro calls:
502+#
503+# AC_SUBST(BOOST_FILESYSTEM_LIB)
504+#
505+# And sets:
506+#
507+# HAVE_BOOST_FILESYSTEM
508+#
509+# LICENSE
510+#
511+# Copyright (c) 2009 Thomas Porschberg <thomas@randspringer.de>
512+# Copyright (c) 2009 Michael Tindal
513+# Copyright (c) 2009 Roman Rybalko <libtorrent@romanr.info>
514+#
515+# Copying and distribution of this file, with or without modification, are
516+# permitted in any medium without royalty provided the copyright notice
517+# and this notice are preserved.
518+
519+AC_DEFUN([AX_BOOST_FILESYSTEM],
520+[
521+ AC_ARG_WITH([boost-filesystem],
522+ AS_HELP_STRING([--with-boost-filesystem@<:@=special-lib@:>@],
523+ [use the Filesystem library from boost - it is possible to specify a certain library for the linker
524+ e.g. --with-boost-filesystem=boost_filesystem-gcc-mt ]),
525+ [
526+ if test "$withval" = "no"; then
527+ want_boost="no"
528+ elif test "$withval" = "yes"; then
529+ want_boost="yes"
530+ ax_boost_user_filesystem_lib=""
531+ else
532+ want_boost="yes"
533+ ax_boost_user_filesystem_lib="$withval"
534+ fi
535+ ],
536+ [want_boost="yes"]
537+ )
538+
539+ if test "x$want_boost" = "xyes"; then
540+ AC_REQUIRE([AC_PROG_CC])
541+ CPPFLAGS_SAVED="$CPPFLAGS"
542+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
543+ #export CPPFLAGS
544+
545+ LDFLAGS_SAVED="$LDFLAGS"
546+ LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
547+ #export LDFLAGS
548+
549+ LIBS_SAVED=$LIBS
550+ LIBS="$LIBS $BOOST_SYSTEM_LIB"
551+ #export LIBS
552+
553+ AC_CACHE_CHECK(whether the Boost::Filesystem library is available,
554+ ax_cv_boost_filesystem,
555+ [AC_LANG_PUSH([C++])
556+ AC_COMPILE_IFELSE(AC_LANG_PROGRAM([[@%:@include <boost/filesystem/path.hpp>]],
557+ [[using namespace boost::filesystem;
558+ path my_path( "foo/bar/data.txt" );
559+ return 0;]]),
560+ ax_cv_boost_filesystem=yes, ax_cv_boost_filesystem=no)
561+ AC_LANG_POP([C++])
562+ ])
563+ if test "x$ax_cv_boost_filesystem" = "xyes"; then
564+ AC_DEFINE(HAVE_BOOST_FILESYSTEM,,[define if the Boost::Filesystem library is available])
565+ BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/@<:@^\/@:>@*//'`
566+ if test "x$ax_boost_user_filesystem_lib" = "x"; then
567+ for libextension in `ls $BOOSTLIBDIR/libboost_filesystem*.{so,dylib,a}* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_filesystem.*\)\.so.*$;\1;' -e 's;^lib\(boost_filesystem.*\)\.a*$;\1;' -e 's;^lib\(boost_filesystem.*\)\.dylib$;\1;'` ; do
568+ ax_lib=${libextension}
569+ AC_CHECK_LIB($ax_lib, __cxa_atexit,
570+ [BOOST_FILESYSTEM_LIB="-l$ax_lib"; AC_SUBST(BOOST_FILESYSTEM_LIB) link_filesystem="yes"; break],
571+ [link_filesystem="no"])
572+ done
573+ if test "x$link_program_options" != "xyes"; then
574+ for libextension in `ls $BOOSTLIBDIR/boost_filesystem*.{dll,a}* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_filesystem.*\)\.dll.*$;\1;' -e 's;^\(boost_filesystem.*\)\.a*$;\1;'` ; do
575+ ax_lib=${libextension}
576+ AC_CHECK_LIB($ax_lib, __cxa_atexit,
577+ [BOOST_FILESYSTEM_LIB="-l$ax_lib"; AC_SUBST(BOOST_FILESYSTEM_LIB) link_filesystem="yes"; break],
578+ [link_filesystem="no"])
579+ done
580+ fi
581+ else
582+ for ax_lib in $ax_boost_user_filesystem_lib boost_filesystem-$ax_boost_user_filesystem_lib; do
583+ AC_CHECK_LIB($ax_lib, __cxa_atexit,
584+ [BOOST_FILESYSTEM_LIB="-l$ax_lib"; AC_SUBST(BOOST_FILESYSTEM_LIB) link_filesystem="yes"; break],
585+ [link_filesystem="no"])
586+ done
587+
588+ fi
589+ if test "x$link_filesystem" != "xyes"; then
590+ AC_MSG_ERROR(Could not link against $ax_lib !)
591+ fi
592+ fi
593+
594+ CPPFLAGS="$CPPFLAGS_SAVED"
595+ LDFLAGS="$LDFLAGS_SAVED"
596+ LIBS="$LIBS_SAVED"
597+ fi
598+])
599
600=== added file 'trunk/Config/ax_boost_python.m4'
601--- trunk/Config/ax_boost_python.m4 1970-01-01 00:00:00 +0000
602+++ trunk/Config/ax_boost_python.m4 2013-05-08 08:43:26 +0000
603@@ -0,0 +1,91 @@
604+# ===========================================================================
605+# http://autoconf-archive.cryp.to/ax_boost_python.html
606+# ===========================================================================
607+#
608+# SYNOPSIS
609+#
610+# AX_BOOST_PYTHON
611+#
612+# DESCRIPTION
613+#
614+# This macro checks to see if the Boost.Python library is installed. It
615+# also attempts to guess the currect library name using several attempts.
616+# It tries to build the library name using a user supplied name or suffix
617+# and then just the raw library.
618+#
619+# If the library is found, HAVE_BOOST_PYTHON is defined and
620+# BOOST_PYTHON_LIB is set to the name of the library.
621+#
622+# This macro calls AC_SUBST(BOOST_PYTHON_LIB).
623+#
624+# In order to ensure that the Python headers are specified on the include
625+# path, this macro requires AX_PYTHON to be called.
626+#
627+# LAST MODIFICATION
628+#
629+# 2008-04-12
630+#
631+# COPYLEFT
632+#
633+# Copyright (c) 2008 Michael Tindal
634+#
635+# This program is free software; you can redistribute it and/or modify it
636+# under the terms of the GNU General Public License as published by the
637+# Free Software Foundation; either version 2 of the License, or (at your
638+# option) any later version.
639+#
640+# This program is distributed in the hope that it will be useful, but
641+# WITHOUT ANY WARRANTY; without even the implied warranty of
642+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
643+# Public License for more details.
644+#
645+# You should have received a copy of the GNU General Public License along
646+# with this program. If not, see <http://www.gnu.org/licenses/>.
647+#
648+# As a special exception, the respective Autoconf Macro's copyright owner
649+# gives unlimited permission to copy, distribute and modify the configure
650+# scripts that are the output of Autoconf when processing the Macro. You
651+# need not follow the terms of the GNU General Public License when using
652+# or distributing such scripts, even though portions of the text of the
653+# Macro appear in them. The GNU General Public License (GPL) does govern
654+# all other use of the material that constitutes the Autoconf Macro.
655+#
656+# This special exception to the GPL applies to versions of the Autoconf
657+# Macro released by the Autoconf Macro Archive. When you make and
658+# distribute a modified version of the Autoconf Macro, you may extend this
659+# special exception to the GPL to apply to your modified version as well.
660+
661+AC_DEFUN([AX_BOOST_PYTHON],
662+[AC_CACHE_CHECK(whether the Boost::Python library is available,
663+ac_cv_boost_python,
664+[AC_LANG_SAVE
665+ AC_LANG_CPLUSPLUS
666+ CPPFLAGS_SAVE=$CPPFLAGS
667+ CPPFLAGS="$BOOST_CPPFLAGS $PYTHON_CPPFLAGS $CPPFLAGS"
668+ if test x$PYTHON_INCLUDE_DIR != x; then
669+ CPPFLAGS=-I$PYTHON_INCLUDE_DIR $CPPFLAGS
670+ fi
671+ AC_COMPILE_IFELSE(AC_LANG_PROGRAM([[
672+ #include <boost/python/module.hpp>
673+ using namespace boost::python;
674+ BOOST_PYTHON_MODULE(test) { throw "Boost::Python test."; }]],
675+ [[return 0;]]),
676+ ac_cv_boost_python=yes, ac_cv_boost_python=no)
677+ AC_LANG_RESTORE
678+ CPPFLAGS=$CPPFLAGS_SAVE
679+])
680+if test "$ac_cv_boost_python" = "yes"; then
681+ AC_DEFINE(HAVE_BOOST_PYTHON,,[define if the Boost::Python library is available])
682+ ax_python_lib=boost_python
683+ AC_ARG_WITH([boost-python],AS_HELP_STRING([--with-boost-python],[specify the boost python library or suffix to use]),
684+ [if test "x$with_boost_python" != "xno"; then
685+ ax_python_lib=$with_boost_python
686+ ax_boost_python_lib=boost_python-$with_boost_python
687+ fi])
688+ LDFLAGS="$BOOST_LDFLAGS $LDFLAGS"
689+ for ax_lib in $ax_python_lib $ax_boost_python_lib boost_python boost_python-mt; do
690+ AC_CHECK_LIB($ax_lib, __cxa_atexit, [BOOST_PYTHON_LIB=-l$ax_lib break])
691+ done
692+ AC_SUBST(BOOST_PYTHON_LIB)
693+fi
694+])dnl
695
696=== added file 'trunk/Config/cppunit.m4'
697--- trunk/Config/cppunit.m4 1970-01-01 00:00:00 +0000
698+++ trunk/Config/cppunit.m4 2013-05-08 08:43:26 +0000
699@@ -0,0 +1,80 @@
700+dnl
701+dnl AM_PATH_CPPUNIT([MINIMUM-VERSION, [ACTION-IF-FOUND [, ACTION-IF-NOT-FOUND]]])
702+dnl
703+AC_DEFUN([AM_PATH_CPPUNIT],
704+[
705+
706+AC_ARG_WITH(cppunit-prefix,[ --with-cppunit-prefix=PFX Prefix where CppUnit is installed (optional)],
707+ cppunit_config_prefix="$withval", cppunit_config_prefix="")
708+AC_ARG_WITH(cppunit-exec-prefix,[ --with-cppunit-exec-prefix=PFX Exec prefix where CppUnit is installed (optional)],
709+ cppunit_config_exec_prefix="$withval", cppunit_config_exec_prefix="")
710+
711+ if test x$cppunit_config_exec_prefix != x ; then
712+ cppunit_config_args="$cppunit_config_args --exec-prefix=$cppunit_config_exec_prefix"
713+ if test x${CPPUNIT_CONFIG+set} != xset ; then
714+ CPPUNIT_CONFIG=$cppunit_config_exec_prefix/bin/cppunit-config
715+ fi
716+ fi
717+ if test x$cppunit_config_prefix != x ; then
718+ cppunit_config_args="$cppunit_config_args --prefix=$cppunit_config_prefix"
719+ if test x${CPPUNIT_CONFIG+set} != xset ; then
720+ CPPUNIT_CONFIG=$cppunit_config_prefix/bin/cppunit-config
721+ fi
722+ fi
723+
724+ AC_PATH_PROG(CPPUNIT_CONFIG, cppunit-config, no)
725+ cppunit_version_min=$1
726+
727+ AC_MSG_CHECKING(for Cppunit - version >= $cppunit_version_min)
728+ no_cppunit=""
729+ if test "$CPPUNIT_CONFIG" = "no" ; then
730+ no_cppunit=yes
731+ else
732+ CPPUNIT_CFLAGS=`$CPPUNIT_CONFIG --cflags`
733+ CPPUNIT_LIBS=`$CPPUNIT_CONFIG --libs`
734+ cppunit_version=`$CPPUNIT_CONFIG --version`
735+
736+ cppunit_major_version=`echo $cppunit_version | \
737+ sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\1/'`
738+ cppunit_minor_version=`echo $cppunit_version | \
739+ sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\2/'`
740+ cppunit_micro_version=`echo $cppunit_version | \
741+ sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\3/'`
742+
743+ cppunit_major_min=`echo $cppunit_version_min | \
744+ sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\1/'`
745+ cppunit_minor_min=`echo $cppunit_version_min | \
746+ sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\2/'`
747+ cppunit_micro_min=`echo $cppunit_version_min | \
748+ sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\3/'`
749+
750+ cppunit_version_proper=`expr \
751+ $cppunit_major_version \> $cppunit_major_min \| \
752+ $cppunit_major_version \= $cppunit_major_min \& \
753+ $cppunit_minor_version \> $cppunit_minor_min \| \
754+ $cppunit_major_version \= $cppunit_major_min \& \
755+ $cppunit_minor_version \= $cppunit_minor_min \& \
756+ $cppunit_micro_version \>= $cppunit_micro_min `
757+
758+ if test "$cppunit_version_proper" = "1" ; then
759+ AC_MSG_RESULT([$cppunit_major_version.$cppunit_minor_version.$cppunit_micro_version])
760+ else
761+ AC_MSG_RESULT(no)
762+ no_cppunit=yes
763+ fi
764+ fi
765+
766+ if test "x$no_cppunit" = x ; then
767+ ifelse([$2], , :, [$2])
768+ else
769+ CPPUNIT_CFLAGS=""
770+ CPPUNIT_LIBS=""
771+ ifelse([$3], , :, [$3])
772+ fi
773+
774+ AC_SUBST(CPPUNIT_CFLAGS)
775+ AC_SUBST(CPPUNIT_LIBS)
776+])
777+
778+
779+
780
781=== added file 'trunk/Config/pkg.m4'
782--- trunk/Config/pkg.m4 1970-01-01 00:00:00 +0000
783+++ trunk/Config/pkg.m4 2013-05-08 08:43:26 +0000
784@@ -0,0 +1,58 @@
785+
786+dnl PKG_CHECK_MODULES(GSTUFF, gtk+-2.0 >= 1.3 glib = 1.3.4, action-if, action-not)
787+dnl defines GSTUFF_LIBS, GSTUFF_CFLAGS, see pkg-config man page
788+dnl also defines GSTUFF_PKG_ERRORS on error
789+
790+AC_DEFUN([PKG_CHECK_MODULES], [
791+ succeeded=no
792+
793+ if test -z "$PKG_CONFIG"; then
794+ AC_PATH_PROG(PKG_CONFIG, pkg-config, no)
795+ fi
796+
797+ if test "$PKG_CONFIG" = "no" ; then
798+ echo "*** The pkg-config script could not be found. Make sure it is"
799+ echo "*** in your path, or set the PKG_CONFIG environment variable"
800+ echo "*** to the full path to pkg-config."
801+ echo "*** Or see http://www.freedesktop.org/software/pkgconfig to get pkg-config."
802+ else
803+ PKG_CONFIG_MIN_VERSION=0.6.0
804+ if $PKG_CONFIG --atleast-pkgconfig-version $PKG_CONFIG_MIN_VERSION; then
805+ AC_MSG_CHECKING(for $2)
806+
807+ if $PKG_CONFIG --exists "$2" ; then
808+ AC_MSG_RESULT(yes)
809+ succeeded=yes
810+
811+ AC_MSG_CHECKING($1_CFLAGS)
812+ $1_CFLAGS=`$PKG_CONFIG --cflags "$2"`
813+ AC_MSG_RESULT($$1_CFLAGS)
814+
815+ AC_MSG_CHECKING($1_LIBS)
816+ $1_LIBS=`$PKG_CONFIG --libs "$2"`
817+ AC_MSG_RESULT($$1_LIBS)
818+ else
819+ $1_CFLAGS=""
820+ $1_LIBS=""
821+ ## If we have a custom action on failure, don't print errors, but
822+ ## do set a variable so people can do so.
823+ $1_PKG_ERRORS=`$PKG_CONFIG --errors-to-stdout --print-errors "$2"`
824+ ifelse([$4], ,echo $$1_PKG_ERRORS,)
825+ fi
826+
827+ AC_SUBST($1_CFLAGS)
828+ AC_SUBST($1_LIBS)
829+ else
830+ echo "*** Your version of pkg-config is too old. You need version $PKG_CONFIG_MIN_VERSION or newer."
831+ echo "*** See http://www.freedesktop.org/software/pkgconfig"
832+ fi
833+ fi
834+
835+ if test $succeeded = yes; then
836+ ifelse([$3], , :, [$3])
837+ else
838+ ifelse([$4], , AC_MSG_ERROR([Library requirements ($2) not met; consider adjusting the PKG_CONFIG_PATH environment variable if your libraries are in a nonstandard prefix so pkg-config can find them.]), [$4])
839+ fi
840+])
841+
842+
843
844=== added file 'trunk/Config/python.m4'
845--- trunk/Config/python.m4 1970-01-01 00:00:00 +0000
846+++ trunk/Config/python.m4 2013-05-08 08:43:26 +0000
847@@ -0,0 +1,193 @@
848+## ------------------------ -*- Autoconf -*-
849+## Python file handling
850+## From Andrew Dalke
851+## Updated by James Henstridge
852+## ------------------------
853+# Copyright (C) 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2008, 2009
854+# Free Software Foundation, Inc.
855+#
856+# This file is free software; the Free Software Foundation
857+# gives unlimited permission to copy and/or distribute it,
858+# with or without modifications, as long as this notice is preserved.
859+
860+# AM_PATH_PYTHON([MINIMUM-VERSION], [ACTION-IF-FOUND], [ACTION-IF-NOT-FOUND])
861+# ---------------------------------------------------------------------------
862+# Adds support for distributing Python modules and packages. To
863+# install modules, copy them to $(pythondir), using the python_PYTHON
864+# automake variable. To install a package with the same name as the
865+# automake package, install to $(pkgpythondir), or use the
866+# pkgpython_PYTHON automake variable.
867+#
868+# The variables $(pyexecdir) and $(pkgpyexecdir) are provided as
869+# locations to install python extension modules (shared libraries).
870+# Another macro is required to find the appropriate flags to compile
871+# extension modules.
872+#
873+# If your package is configured with a different prefix to python,
874+# users will have to add the install directory to the PYTHONPATH
875+# environment variable, or create a .pth file (see the python
876+# documentation for details).
877+#
878+# If the MINIMUM-VERSION argument is passed, AM_PATH_PYTHON will
879+# cause an error if the version of python installed on the system
880+# doesn't meet the requirement. MINIMUM-VERSION should consist of
881+# numbers and dots only.
882+AC_DEFUN([AM_PATH_PYTHON],
883+ [
884+ dnl Find a Python interpreter. Python versions prior to 2.0 are not
885+ dnl supported. (2.0 was released on October 16, 2000).
886+ m4_define_default([_AM_PYTHON_INTERPRETER_LIST],
887+ [python python2 python3 python3.0 python2.6 python2.5 python2.4 python2.3 python2.2 dnl
888+python2.1 python2.0])
889+
890+ m4_if([$1],[],[
891+ dnl No version check is needed.
892+ # Find any Python interpreter.
893+ if test -z "$PYTHON"; then
894+ AC_PATH_PROGS([PYTHON], _AM_PYTHON_INTERPRETER_LIST, :)
895+ fi
896+ am_display_PYTHON=python
897+ ], [
898+ dnl A version check is needed.
899+ if test -n "$PYTHON"; then
900+ # If the user set $PYTHON, use it and don't search something else.
901+ AC_MSG_CHECKING([whether $PYTHON version >= $1])
902+ AM_PYTHON_CHECK_VERSION([$PYTHON], [$1],
903+ [AC_MSG_RESULT(yes)],
904+ [AC_MSG_ERROR(too old)])
905+ am_display_PYTHON=$PYTHON
906+ else
907+ # Otherwise, try each interpreter until we find one that satisfies
908+ # VERSION.
909+ AC_CACHE_CHECK([for a Python interpreter with version >= $1],
910+ [am_cv_pathless_PYTHON],[
911+ for am_cv_pathless_PYTHON in _AM_PYTHON_INTERPRETER_LIST none; do
912+ test "$am_cv_pathless_PYTHON" = none && break
913+ AM_PYTHON_CHECK_VERSION([$am_cv_pathless_PYTHON], [$1], [break])
914+ done])
915+ # Set $PYTHON to the absolute path of $am_cv_pathless_PYTHON.
916+ if test "$am_cv_pathless_PYTHON" = none; then
917+ PYTHON=:
918+ else
919+ AC_PATH_PROG([PYTHON], [$am_cv_pathless_PYTHON])
920+ fi
921+ am_display_PYTHON=$am_cv_pathless_PYTHON
922+ fi
923+ ])
924+
925+ if test "$PYTHON" = :; then
926+ dnl Run any user-specified action, or abort.
927+ m4_default([$3], [AC_MSG_ERROR([no suitable Python interpreter found])])
928+ else
929+
930+ dnl Query Python for its version number. Getting [:3] seems to be
931+ dnl the best way to do this; it's what "site.py" does in the standard
932+ dnl library.
933+
934+ AC_CACHE_CHECK([for $am_display_PYTHON version], [am_cv_python_version],
935+ [am_cv_python_version=`$PYTHON -c "import sys; sys.stdout.write(sys.version[[:3]])"`])
936+ AC_SUBST([PYTHON_VERSION], [$am_cv_python_version])
937+
938+ dnl Use the values of $prefix and $exec_prefix for the corresponding
939+ dnl values of PYTHON_PREFIX and PYTHON_EXEC_PREFIX. These are made
940+ dnl distinct variables so they can be overridden if need be. However,
941+ dnl general consensus is that you shouldn't need this ability.
942+
943+ AC_SUBST([PYTHON_PREFIX], ['${prefix}'])
944+ AC_SUBST([PYTHON_EXEC_PREFIX], ['${exec_prefix}'])
945+
946+ dnl At times (like when building shared libraries) you may want
947+ dnl to know which OS platform Python thinks this is.
948+
949+ AC_CACHE_CHECK([for $am_display_PYTHON platform], [am_cv_python_platform],
950+ [am_cv_python_platform=`$PYTHON -c "import sys; sys.stdout.write(sys.platform)"`])
951+ AC_SUBST([PYTHON_PLATFORM], [$am_cv_python_platform])
952+
953+
954+ dnl Set up 4 directories:
955+
956+ dnl pythondir -- where to install python scripts. This is the
957+ dnl site-packages directory, not the python standard library
958+ dnl directory like in previous automake betas. This behavior
959+ dnl is more consistent with lispdir.m4 for example.
960+ dnl Query distutils for this directory. distutils does not exist in
961+ dnl Python 1.5, so we fall back to the hardcoded directory if it
962+ dnl doesn't work.
963+ AC_CACHE_CHECK([for $am_display_PYTHON script directory],
964+ [am_cv_python_pythondir],
965+ [if test "x$prefix" = xNONE
966+ then
967+ am_py_prefix=$ac_default_prefix
968+ else
969+ am_py_prefix=$prefix
970+ fi
971+ am_cv_python_pythondir=`$PYTHON -c "import sys; from distutils import sysconfig; sys.stdout.write(sysconfig.get_python_lib(0,0,prefix='$am_py_prefix'))" 2>/dev/null ||
972+ echo "$PYTHON_PREFIX/lib/python$PYTHON_VERSION/site-packages"`
973+ case $am_cv_python_pythondir in
974+ $am_py_prefix*)
975+ am__strip_prefix=`echo "$am_py_prefix" | sed 's|.|.|g'`
976+ am_cv_python_pythondir=`echo "$am_cv_python_pythondir" | sed "s,^$am__strip_prefix,$PYTHON_PREFIX,"`
977+ ;;
978+ esac
979+ ])
980+ AC_SUBST([pythondir], [$am_cv_python_pythondir])
981+
982+ dnl pkgpythondir -- $PACKAGE directory under pythondir. Was
983+ dnl PYTHON_SITE_PACKAGE in previous betas, but this naming is
984+ dnl more consistent with the rest of automake.
985+
986+ AC_SUBST([pkgpythondir], [\${pythondir}/$PACKAGE])
987+
988+ dnl pyexecdir -- directory for installing python extension modules
989+ dnl (shared libraries)
990+ dnl Query distutils for this directory. distutils does not exist in
991+ dnl Python 1.5, so we fall back to the hardcoded directory if it
992+ dnl doesn't work.
993+ AC_CACHE_CHECK([for $am_display_PYTHON extension module directory],
994+ [am_cv_python_pyexecdir],
995+ [if test "x$exec_prefix" = xNONE
996+ then
997+ am_py_exec_prefix=$am_py_prefix
998+ else
999+ am_py_exec_prefix=$exec_prefix
1000+ fi
1001+ am_cv_python_pyexecdir=`$PYTHON -c "import sys; from distutils import sysconfig; sys.stdout.write(sysconfig.get_python_lib(1,0,prefix='$am_py_exec_prefix'))" 2>/dev/null ||
1002+ echo "$PYTHON_EXEC_PREFIX/lib/python$PYTHON_VERSION/site-packages"`
1003+ case $am_cv_python_pyexecdir in
1004+ $am_py_exec_prefix*)
1005+ am__strip_prefix=`echo "$am_py_exec_prefix" | sed 's|.|.|g'`
1006+ am_cv_python_pyexecdir=`echo "$am_cv_python_pyexecdir" | sed "s,^$am__strip_prefix,$PYTHON_EXEC_PREFIX,"`
1007+ ;;
1008+ esac
1009+ ])
1010+ AC_SUBST([pyexecdir], [$am_cv_python_pyexecdir])
1011+
1012+ dnl pkgpyexecdir -- $(pyexecdir)/$(PACKAGE)
1013+
1014+ AC_SUBST([pkgpyexecdir], [\${pyexecdir}/$PACKAGE])
1015+
1016+ dnl Run any user-specified action.
1017+ $2
1018+ fi
1019+
1020+])
1021+
1022+
1023+# AM_PYTHON_CHECK_VERSION(PROG, VERSION, [ACTION-IF-TRUE], [ACTION-IF-FALSE])
1024+# ---------------------------------------------------------------------------
1025+# Run ACTION-IF-TRUE if the Python interpreter PROG has version >= VERSION.
1026+# Run ACTION-IF-FALSE otherwise.
1027+# This test uses sys.hexversion instead of the string equivalent (first
1028+# word of sys.version), in order to cope with versions such as 2.2c1.
1029+# This supports Python 2.0 or higher. (2.0 was released on October 16, 2000).
1030+AC_DEFUN([AM_PYTHON_CHECK_VERSION],
1031+ [prog="import sys
1032+# split strings by '.' and convert to numeric. Append some zeros
1033+# because we need at least 4 digits for the hex conversion.
1034+# map returns an iterator in Python 3.0 and a list in 2.x
1035+minver = list(map(int, '$2'.split('.'))) + [[0, 0, 0]]
1036+minverhex = 0
1037+# xrange is not present in Python 3.0 and range returns an iterator
1038+for i in list(range(0, 4)): minverhex = (minverhex << 8) + minver[[i]]
1039+sys.exit(sys.hexversion < minverhex)"
1040+ AS_IF([AM_RUN_LOG([$1 -c "$prog"])], [$3], [$4])])
1041
1042=== added file 'trunk/Config/rules.am'
1043--- trunk/Config/rules.am 1970-01-01 00:00:00 +0000
1044+++ trunk/Config/rules.am 2013-05-08 08:43:26 +0000
1045@@ -0,0 +1,58 @@
1046+#############################################################
1047+## ##
1048+## Copyright (c) 2003-2011 by The University of Queensland ##
1049+## Earth Systems Science Computational Centre (ESSCC) ##
1050+## http://www.uq.edu.au/esscc ##
1051+## ##
1052+## Primary Business: Brisbane, Queensland, Australia ##
1053+## Licensed under the Open Software License version 3.0 ##
1054+## http://www.opensource.org/licenses/osl-3.0.php ##
1055+## ##
1056+#############################################################
1057+
1058+##
1059+#
1060+# Begin $(top_srcdir)/Config/rules.am
1061+#
1062+
1063+if TAU_PROFILING
1064+ include $(TAU_MAKEFILE)
1065+ AM_MAKEFLAGS = -r CC="$(TAU_CC)" CXX="$(TAU_CXX)" CPPFLAGS="$(TAU_DEFS) $(TAU_INCLUDE) $(TAU_MPI_INCLUDE)"
1066+
1067+ PDTPARSE = $(PDTDIR)/$(CONFIG_ARCH)/bin/cxxparse
1068+ TAUINSTR = $(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/bin/tau_instrumentor
1069+
1070+ EXTRA_LD_LIBS = $(TAU_LDFLAGS) $(TAU_MPI_LIBS) $(TAU_LIBS) -lpfm
1071+
1072+#
1073+# Prevent intermediate instrumented files from automatically
1074+# being deleted.
1075+#
1076+.SECONDARY: .inst_cpp .pdb
1077+
1078+#
1079+# Cancel implicit rules
1080+#
1081+%.o: %.cpp
1082+
1083+%.o:%.inst_cpp
1084+ if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \
1085+ then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
1086+
1087+%.inst_cpp: %.pdb
1088+ $(TAUINSTR) $*.pdb $*.cpp -o $@
1089+
1090+%.pdb: %.cpp
1091+ $(PDTPARSE) $< -I. $(CPPFLAGS) $(AM_CPPFLAGS)
1092+
1093+else
1094+ AM_MAKEFLAGS =
1095+ EXTRA_LD_LIBS =
1096+endif
1097+
1098+CLEANFILES = *.inst_cpp *.pdb
1099+
1100+#
1101+# End $(top_srcdir)/Config/rules.am
1102+#
1103+##
1104
1105=== added directory 'trunk/Doc'
1106=== added file 'trunk/Doc/FileFormat.pdf'
1107Binary files trunk/Doc/FileFormat.pdf 1970-01-01 00:00:00 +0000 and trunk/Doc/FileFormat.pdf 2013-05-08 08:43:26 +0000 differ
1108=== added file 'trunk/Doc/FileFormat.ps'
1109--- trunk/Doc/FileFormat.ps 1970-01-01 00:00:00 +0000
1110+++ trunk/Doc/FileFormat.ps 2013-05-08 08:43:26 +0000
1111@@ -0,0 +1,2861 @@
1112+%!PS-Adobe-2.0
1113+%%Creator: dvips(k) 5.92b Copyright 2002 Radical Eye Software
1114+%%Title: FileFormat.dvi
1115+%%Pages: 4
1116+%%PageOrder: Ascend
1117+%%BoundingBox: 0 0 596 842
1118+%%DocumentFonts: CMR17 CMR12 CMBX12 CMR10 CMTI10 CMBX10 CMSY10 CMR7 CMR6
1119+%%+ CMR8 CMTT10 CMSS10 CMMI10
1120+%%DocumentPaperSizes: a4
1121+%%EndComments
1122+%DVIPSWebPage: (www.radicaleye.com)
1123+%DVIPSCommandLine: dvips FileFormat
1124+%DVIPSParameters: dpi=600, compressed
1125+%DVIPSSource: TeX output 2004.11.08:1214
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1185+% Thomas Esser, Dec 2002. public domain
1186+%
1187+% Encoding for:
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1192+%
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1199+/period /slash /zero /one /two /three /four /five /six /seven /eight
1200+/nine /colon /semicolon /exclamdown /equal /questiondown /question /at
1201+/A /B /C /D /E /F /G /H /I /J /K /L /M /N /O /P /Q /R /S /T /U /V /W /X
1202+/Y /Z /bracketleft /quotedblleft /bracketright /circumflex /dotaccent
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1225+%
1226+% Encoding for:
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1228+%
1229+/TeX74afc74cEncoding [
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1257+
1258+%%EndProcSet
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1260+% Thomas Esser, Dec 2002. public domain
1261+%
1262+% Encoding for:
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1264+%
1265+/TeXbbad153fEncoding [
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1267+/plusminus /minusplus /circleplus /circleminus /circlemultiply
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1274+/arrowdbldown /arrowdblboth /arrownorthwest /arrowsouthwest /proportional
1275+/prime /infinity /element /owner /triangle /triangleinv /negationslash
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1308+%
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1344+%
1345+% Encoding for:
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1347+%
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1384+ne{/Metrics exch def dict begin Encoding{exch dup type/integertype ne{
1385+pop pop 1 sub dup 0 le{pop}{[}ifelse}{FontMatrix 0 get div Metrics 0 get
1386+div def}ifelse}forall Metrics/Metrics currentdict end def}{{1 index type
1387+/nametype eq{exit}if exch pop}loop}ifelse[2 index currentdict end
1388+definefont 3 -1 roll makefont/setfont cvx]cvx def}def/ObliqueSlant{dup
1389+sin S cos div neg}B/SlantFont{4 index mul add}def/ExtendFont{3 -1 roll
1390+mul exch}def/ReEncodeFont{CharStrings rcheck{/Encoding false def dup[
1391+exch{dup CharStrings exch known not{pop/.notdef/Encoding true def}if}
1392+forall Encoding{]exch pop}{cleartomark}ifelse}if/Encoding exch def}def
1393+end
1394+
1395+%%EndProcSet
1396+%%BeginFont: CMMI10
1397+%!PS-AdobeFont-1.1: CMMI10 1.100
1398+%%CreationDate: 1996 Jul 23 07:53:57
1399+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
1400+11 dict begin
1401+/FontInfo 7 dict dup begin
1402+/version (1.100) readonly def
1403+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
1404+/FullName (CMMI10) readonly def
1405+/FamilyName (Computer Modern) readonly def
1406+/Weight (Medium) readonly def
1407+/ItalicAngle -14.04 def
1408+/isFixedPitch false def
1409+end readonly def
1410+/FontName /CMMI10 def
1411+/PaintType 0 def
1412+/FontType 1 def
1413+/FontMatrix [0.001 0 0 0.001 0 0] readonly def
1414+/Encoding 256 array
1415+0 1 255 {1 index exch /.notdef put} for
1416+dup 0 /.notdef put
1417+readonly def
1418+/FontBBox{-32 -250 1048 750}readonly def
1419+/UniqueID 5087385 def
1420+currentdict end
1421+currentfile eexec
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1481+E968593534A5B60BC147353311159A020C8BEE417A4AC360C30BEEAB07A91221
1482+365C8E2704BB45FCECFA4E2598098358BF4AEAFF659D
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1490+0000000000000000000000000000000000000000000000000000000000000000
1491+cleartomark
1492+%%EndFont
1493+%%BeginFont: CMSS10
1494+%!PS-AdobeFont-1.1: CMSS10 1.0
1495+%%CreationDate: 1991 Aug 20 17:33:34
1496+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
1497+11 dict begin
1498+/FontInfo 7 dict dup begin
1499+/version (1.0) readonly def
1500+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
1501+/FullName (CMSS10) readonly def
1502+/FamilyName (Computer Modern) readonly def
1503+/Weight (Medium) readonly def
1504+/ItalicAngle 0 def
1505+/isFixedPitch false def
1506+end readonly def
1507+/FontName /CMSS10 def
1508+/PaintType 0 def
1509+/FontType 1 def
1510+/FontMatrix [0.001 0 0 0.001 0 0] readonly def
1511+/Encoding 256 array
1512+0 1 255 {1 index exch /.notdef put} for
1513+dup 0 /.notdef put
1514+readonly def
1515+/FontBBox{-61 -250 999 759}readonly def
1516+/UniqueID 5000803 def
1517+currentdict end
1518+currentfile eexec
1519+D9D66F633B846A97B686A97E45A3D0AA052A014267B7904EB3C0D3BD0B83D891
1520+016CA6CA4B712ADEB258FAAB9A130EE605E61F77FC1B738ABC7C51CD46EF8171
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1607+cleartomark
1608+%%EndFont
1609+%%BeginFont: CMTT10
1610+%!PS-AdobeFont-1.1: CMTT10 1.00B
1611+%%CreationDate: 1992 Apr 26 10:42:42
1612+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
1613+11 dict begin
1614+/FontInfo 7 dict dup begin
1615+/version (1.00B) readonly def
1616+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
1617+/FullName (CMTT10) readonly def
1618+/FamilyName (Computer Modern) readonly def
1619+/Weight (Medium) readonly def
1620+/ItalicAngle 0 def
1621+/isFixedPitch true def
1622+end readonly def
1623+/FontName /CMTT10 def
1624+/PaintType 0 def
1625+/FontType 1 def
1626+/FontMatrix [0.001 0 0 0.001 0 0] readonly def
1627+/Encoding 256 array
1628+0 1 255 {1 index exch /.notdef put} for
1629+dup 0 /.notdef put
1630+readonly def
1631+/FontBBox{-4 -235 731 800}readonly def
1632+/UniqueID 5000832 def
1633+currentdict end
1634+currentfile eexec
1635+D9D66F633B846A97B686A97E45A3D0AA052A014267B7904EB3C0D3BD0B83D891
1636+016CA6CA4B712ADEB258FAAB9A130EE605E61F77FC1B738ABC7C51CD46EF8171
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1639+469A6C558785B226332152109871A9883487DD7710949204DDCF837E6A8708B8
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1642+D0E153BAB1C17900D4FCE209622ACD19E7C74C2807D0397357ED07AB460D5204
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1647+6A0C84DD63275395A503AAE908E1C82D389FD12A21E86999799E7F24A994472E
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1890+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
1891+11 dict begin
1892+/FontInfo 7 dict dup begin
1893+/version (1.0) readonly def
1894+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
1895+/FullName (CMBX12) readonly def
1896+/FamilyName (Computer Modern) readonly def
1897+/Weight (Bold) readonly def
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1900+end readonly def
1901+/FontName /CMBX12 def
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1904+/FontMatrix [0.001 0 0 0.001 0 0] readonly def
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2108+%!PS-AdobeFont-1.1: CMR8 1.0
2109+%%CreationDate: 1991 Aug 20 16:39:40
2110+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
2111+11 dict begin
2112+/FontInfo 7 dict dup begin
2113+/version (1.0) readonly def
2114+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
2115+/FullName (CMR8) readonly def
2116+/FamilyName (Computer Modern) readonly def
2117+/Weight (Medium) readonly def
2118+/ItalicAngle 0 def
2119+/isFixedPitch false def
2120+end readonly def
2121+/FontName /CMR8 def
2122+/PaintType 0 def
2123+/FontType 1 def
2124+/FontMatrix [0.001 0 0 0.001 0 0] readonly def
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2128+readonly def
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2131+currentdict end
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2371+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
2372+11 dict begin
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2444+%%BeginFont: CMR7
2445+%!PS-AdobeFont-1.1: CMR7 1.0
2446+%%CreationDate: 1991 Aug 20 16:39:21
2447+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
2448+11 dict begin
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2450+/version (1.0) readonly def
2451+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
2452+/FullName (CMR7) readonly def
2453+/FamilyName (Computer Modern) readonly def
2454+/Weight (Medium) readonly def
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2458+/FontName /CMR7 def
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2468+currentdict end
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2527+%%EndFont
2528+%%BeginFont: CMSY10
2529+%!PS-AdobeFont-1.1: CMSY10 1.0
2530+%%CreationDate: 1991 Aug 15 07:20:57
2531+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
2532+11 dict begin
2533+/FontInfo 7 dict dup begin
2534+/version (1.0) readonly def
2535+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
2536+/FullName (CMSY10) readonly def
2537+/FamilyName (Computer Modern) readonly def
2538+/Weight (Medium) readonly def
2539+/ItalicAngle -14.035 def
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2541+end readonly def
2542+/FontName /CMSY10 def
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2549+readonly def
2550+/FontBBox{-29 -960 1116 775}readonly def
2551+/UniqueID 5000820 def
2552+currentdict end
2553+currentfile eexec
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2584+%!PS-AdobeFont-1.1: CMBX10 1.00B
2585+%%CreationDate: 1992 Feb 19 19:54:06
2586+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
2587+11 dict begin
2588+/FontInfo 7 dict dup begin
2589+/version (1.00B) readonly def
2590+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
2591+/FullName (CMBX10) readonly def
2592+/FamilyName (Computer Modern) readonly def
2593+/Weight (Bold) readonly def
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2596+end readonly def
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2607+currentdict end
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2771+%%CreationDate: 1992 Feb 19 19:56:16
2772+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
2773+11 dict begin
2774+/FontInfo 7 dict dup begin
2775+/version (1.00B) readonly def
2776+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
2777+/FullName (CMTI10) readonly def
2778+/FamilyName (Computer Modern) readonly def
2779+/Weight (Medium) readonly def
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2782+end readonly def
2783+/FontName /CMTI10 def
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2786+/FontMatrix [0.001 0 0 0.001 0 0] readonly def
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3015+%%CreationDate: 1992 Feb 19 19:54:52
3016+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
3017+11 dict begin
3018+/FontInfo 7 dict dup begin
3019+/version (1.00B) readonly def
3020+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
3021+/FullName (CMR10) readonly def
3022+/FamilyName (Computer Modern) readonly def
3023+/Weight (Medium) readonly def
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3026+end readonly def
3027+/FontName /CMR10 def
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3030+/FontMatrix [0.001 0 0 0.001 0 0] readonly def
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3037+currentdict end
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3402+cleartomark
3403+%%EndFont
3404+%%BeginFont: CMR12
3405+%!PS-AdobeFont-1.1: CMR12 1.0
3406+%%CreationDate: 1991 Aug 20 16:38:05
3407+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
3408+11 dict begin
3409+/FontInfo 7 dict dup begin
3410+/version (1.0) readonly def
3411+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
3412+/FullName (CMR12) readonly def
3413+/FamilyName (Computer Modern) readonly def
3414+/Weight (Medium) readonly def
3415+/ItalicAngle 0 def
3416+/isFixedPitch false def
3417+end readonly def
3418+/FontName /CMR12 def
3419+/PaintType 0 def
3420+/FontType 1 def
3421+/FontMatrix [0.001 0 0 0.001 0 0] readonly def
3422+/Encoding 256 array
3423+0 1 255 {1 index exch /.notdef put} for
3424+dup 0 /.notdef put
3425+readonly def
3426+/FontBBox{-34 -251 988 750}readonly def
3427+/UniqueID 5000794 def
3428+currentdict end
3429+currentfile eexec
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3554+cleartomark
3555+%%EndFont
3556+%%BeginFont: CMR17
3557+%!PS-AdobeFont-1.1: CMR17 1.0
3558+%%CreationDate: 1991 Aug 20 16:38:24
3559+% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
3560+11 dict begin
3561+/FontInfo 7 dict dup begin
3562+/version (1.0) readonly def
3563+/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
3564+/FullName (CMR17) readonly def
3565+/FamilyName (Computer Modern) readonly def
3566+/Weight (Medium) readonly def
3567+/ItalicAngle 0 def
3568+/isFixedPitch false def
3569+end readonly def
3570+/FontName /CMR17 def
3571+/PaintType 0 def
3572+/FontType 1 def
3573+/FontMatrix [0.001 0 0 0.001 0 0] readonly def
3574+/Encoding 256 array
3575+0 1 255 {1 index exch /.notdef put} for
3576+dup 0 /.notdef put
3577+readonly def
3578+/FontBBox{-33 -250 945 749}readonly def
3579+/UniqueID 5000795 def
3580+currentdict end
3581+currentfile eexec
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3973
3974=== added file 'trunk/Doc/FileFormat.tex'
3975--- trunk/Doc/FileFormat.tex 1970-01-01 00:00:00 +0000
3976+++ trunk/Doc/FileFormat.tex 2013-05-08 08:43:26 +0000
3977@@ -0,0 +1,144 @@
3978+\documentclass{article}
3979+
3980+\begin{document}
3981+\title{Geometry Input File Format for ESyS-Particle - Version 2.0.}
3982+\author{Steffen Abe}
3983+\date{\today}
3984+\maketitle
3985+
3986+\section{Introduction}
3987+The input file described here contains only the description of the model geometry. The material properties of the particles (density \dots) and interactions (spring constant, breaking distance \dots) are described elsewhere, either in a separate properties file or in the script \textit{TBD}. In order to facilitate this, both particles and predefined connections/interactions have tags.
3988+\subsubsection*{Rationale:}
3989+\begin{itemize}
3990+\item Makes it possible to change the properties
3991+independently from the geometries, for example in order to easily run a suite of simulation with identical geometries but varying material properties.
3992+\end{itemize}
3993+The input files are pure ASCII files formatted in the way described in the following sections.
3994+\subsubsection*{Rationale:}
3995+\begin{itemize}
3996+\item ASCII is preferred over binary format for portability and debuggability reasons.
3997+\item Using some ``standard'' description language, i.e. XML seems
3998+ \begin{itemize}
3999+ \item unnecessary as the files are machine generated and read, which reduces the need for flexibility and verbosity
4000+ \item a suboptimal solution with respect to file size, i.e. a million particle file would grow quite large if XML was used \footnote{It would be quite large anyway, somewhere around 40--50 byte per particle and 15--20 byte per connection, i.e. a file describing a model consisting of $10^6$ part in a fully connected regular 3D lattice would have a size around 100MB. So we may look at using compressed (libz, libbz2) files at some later stage.}
4001+ \end{itemize}
4002+\end{itemize}
4003+
4004+
4005+\section{The File Format}
4006+
4007+The geometry file specifies the overall model geometry, the particle positions and geometries, the assignment of the particles to some particle groups and the initial connectivity between particles, i.e. the bonds. In case of spherical particles the per-particle geometry is reduced to just the particle radius.
4008+\subsection{File Structure}
4009+The geometry file consist of a header and 3 content sections:
4010+\begin{enumerate}
4011+\item The ``model geometry'' section which contains the containing volume(s) of the model and definition of circular (periodic) boundary conditions
4012+\item The ``particles'' section
4013+\item The ``connections'' section
4014+\end{enumerate}
4015+\subsection{Header}
4016+The header just contains an identifier for the file type and the version of the file.
4017+\begin{verbatim}
4018+LSMGeometry 1.2
4019+\end{verbatim}
4020+where \textsf{LSMGeometry} is the identifier and \textsf{1.2} the current version number.
4021+
4022+
4023+\subsection{Model Geometry}
4024+
4025+The model geometry section contains a description of the volume(s) in which the model is contained, a definition which of the boundaries of this volume are periodic and the dimensionality of the model. In the current version the containing volume is just an axis aligned bounding box which is given by the coordinates of minimum and maximum corners. The boundaries are described by a boolean value (0,1) for each coordinate axis, where 1 stands for periodic, 0 for non-periodic. The distinction between 2D and 3D models is done between done in order to be able to calculate the correct volume of a particle from its radius, i.e. $\pi r^2$ vs. ${4 \over 3} \pi r^3$. For Version 1.1. files which have no dimensionality given, 2D is assumed.
4026+\begin{verbatim}
4027+BoundingBox min.x min.y min.z max.x max.y max.z
4028+PeriodicBoundaries x y z
4029+Dimensions [2D|3D]
4030+\end{verbatim}
4031+
4032+
4033+\subsection{Particles}
4034+
4035+The particle section of the geometry file contains beginning and end markers, a keyword for the particle type, i.e. \textsf{Simple} for simple (irrotational) spherical particles, the total number of particles and a set of data for each particle. In case of spherical particles these data consist of the position (vector), radius (float), particle id (int) and the particle tag (int). The tag is used to assign the particle to specific particle groups.
4036+\begin{verbatim}
4037+BeginParticles
4038+Simple
4039+nparticles
4040+pos0.x pos0.y pos0.z rad0 id0 tag0
4041+pos1.x pos1.y pos1.z rad1 id1 tag1
4042+pos2.x pos2.y pos2.z rad2 id2 tag2
4043+...
4044+posN.x posN.y posN.z radN idN tagN
4045+EndParticles
4046+\end{verbatim}
4047+\subsubsection{Particle Types}
4048+\begin{tabular}[h!]{|l|l|}
4049+\hline
4050+keyword & description \\
4051+\hline
4052+\hline
4053+Simple & irrotational spherical particle \\
4054+%SimpleRot & rotational spherical particle \\
4055+\hline
4056+\end{tabular}
4057+
4058+
4059+\subsection{Connectivity}
4060+
4061+A list of predefined connections between particles is necessary for the definition of particle interactions which are persistent and not dynamically formed during the simulation, i.e. bonds. The connectivity section of the geometry file contains beginning and end markers, the number of connections and for each connection the ids (int) of the two particles involved and a tag (int) which assigns the connection to a connection group. The pairs of particle ids must be ordered i.e. the first id must be less than the second one.
4062+\begin{verbatim}
4063+BeginConnect
4064+nconnect
4065+id0_1 id0_2 tag0
4066+id1_1 id1_2 tag1
4067+id2_1 id2_2 tag2
4068+...
4069+idN_1 idN_2 tagN
4070+EndConnect
4071+\end{verbatim}
4072+\textit{Should we define the syntax for n-particle ($n>2$) connections or leave that for later versions?}
4073+\label{sec:prp}
4074+\section{Example}
4075+Simple example: boundaries periodic in x, open in y and z, 8 irrotational spherical particles of radius 1.0, positioned at the corners of a cube and connected along the edges of the cube. The particles are grouped into 2 groups, representing the particles with $y=0$ and $y=2$ respectively. The tags are 0 for $y=0.0$ and 1 for $y=2.0$. The connections all belong to the same group. \textbf{Note:} The particle tags and the connection tags are independent of each other, i.e. we can use ``0'' as a connection tag even if ``0'' is already used as a particle tag.
4076+%%\newpage
4077+\begin{verbatim}
4078+LSMGeometry 1.2
4079+BoundingBox -1.0 -1.0 -1.0 3.0 3.0 3.0
4080+PeriodicBoundaries 1 0 0
4081+Dimension 3D
4082+BeginParticles
4083+Simple
4084+8
4085+0.0 0.0 0.0 1.0 0 0
4086+0.0 0.0 1.0 1.0 1 0
4087+0.0 1.0 0.0 1.0 2 1
4088+0.0 1.0 1.0 1.0 3 1
4089+1.0 0.0 0.0 1.0 4 0
4090+1.0 0.0 1.0 1.0 5 0
4091+1.0 1.0 0.0 1.0 6 1
4092+1.0 1.0 1.0 1.0 7 1
4093+EndParticles
4094+BeginConnect
4095+12
4096+0 1 0
4097+0 2 0
4098+0 4 0
4099+1 3 0
4100+1 5 0
4101+2 3 0
4102+2 6 0
4103+3 7 0
4104+4 5 0
4105+4 6 0
4106+5 7 0
4107+6 7 0
4108+EndConnect
4109+\end{verbatim}
4110+
4111+
4112+\section{History}
4113+\begin{tabular}{|r|l|}
4114+\hline
4115+10.6.2003 & initial version \\
4116+11.9.2003 & version 1.1 , changed from multiple to single tag for particles \\
4117+3.2.2004 & version 1.2., added 2D/3D indication \\
4118+17.2.2011 & SimpleRot is no longer supported by ESyS-Particle, with the Simple particle type now encompassing both rotational and irrotational particles
4119+\hline
4120+\end{tabular}
4121+\end{document}
4122
4123=== added file 'trunk/Doc/FileFormat.txt'
4124--- trunk/Doc/FileFormat.txt 1970-01-01 00:00:00 +0000
4125+++ trunk/Doc/FileFormat.txt 2013-05-08 08:43:26 +0000
4126@@ -0,0 +1,11 @@
4127+
4128+
4129+Input File Format for ESyS-Particle
4130+
4131+
4132+v0.01, 10.06.2003
4133+-------------------
4134+
4135+The input is split into 2 Files, one for geometry (.geo), one for material
4136+properties (.prp). Rationale: Makes it possible to exchange the properties
4137+independently from the
4138
4139=== added directory 'trunk/Doc/Manual'
4140=== added file 'trunk/Doc/Manual/distutils.sty'
4141--- trunk/Doc/Manual/distutils.sty 1970-01-01 00:00:00 +0000
4142+++ trunk/Doc/Manual/distutils.sty 2013-05-08 08:43:26 +0000
4143@@ -0,0 +1,33 @@
4144+%
4145+% LaTeX commands and macros needed for the two Distutils manuals,
4146+% inst.tex and dist.tex.
4147+%
4148+% $Id$
4149+%
4150+
4151+% My gripe list about the Python style files:
4152+% * I want italics in verbatim environments for variable
4153+% text (verbatim.sty?)
4154+% * I hate escaping underscores (url.sty fixes this)
4155+
4156+% '\command' is for Distutils commands which, depending on your
4157+% perspective, are just arguments to the setup script, or sub-
4158+% commands of the setup script, or the classes that implement
4159+% each "command".
4160+\newcommand{\command}[1]{\code{#1}}
4161+
4162+% '\option' is for Distutils options *in* the setup script. Command-
4163+% line options *to* the setup script are marked up in the usual
4164+% way, ie. with '\programopt' or '\longprogramopt'
4165+\newcommand{\option}[1]{\textsf{\small{#1}}}
4166+
4167+% '\filevar' is for variable components of file/path names -- eg.
4168+% when you put 'prefix' in a pathname, you mark it up with
4169+% '\filevar' so that it still looks pathname-ish, but is
4170+% distinguished from the literal part of the path. Fred says
4171+% this can be accomplished just fine with '\var', but I violently
4172+% disagree. Pistols at dawn will sort this one out.
4173+\newcommand{\filevar}[1]{{\textsl{\filenq{#1}}}}
4174+
4175+% Just while the code and docs are still under development.
4176+\newcommand{\XXX}[1]{\textbf{**#1**}}
4177
4178=== added file 'trunk/Doc/Manual/dump-file.tex'
4179--- trunk/Doc/Manual/dump-file.tex 1970-01-01 00:00:00 +0000
4180+++ trunk/Doc/Manual/dump-file.tex 2013-05-08 08:43:26 +0000
4181@@ -0,0 +1,2 @@
4182+\chapter{The Checkpoint Data Format}
4183+\label{app::dump}
4184
4185=== added file 'trunk/Doc/Manual/fancyhdr.sty'
4186--- trunk/Doc/Manual/fancyhdr.sty 1970-01-01 00:00:00 +0000
4187+++ trunk/Doc/Manual/fancyhdr.sty 2013-05-08 08:43:26 +0000
4188@@ -0,0 +1,329 @@
4189+% fancyhdr.sty version 1.99d
4190+% Fancy headers and footers for LaTeX.
4191+% Piet van Oostrum, Dept of Computer Science, University of Utrecht
4192+% Padualaan 14, P.O. Box 80.089, 3508 TB Utrecht, The Netherlands
4193+% Telephone: +31 30 2532180. Email: piet@cs.ruu.nl
4194+% ========================================================================
4195+% LICENCE: This is free software. You are allowed to use and distribute
4196+% this software in any way you like. You are also allowed to make modified
4197+% versions of it, but you can distribute a modified version only if you
4198+% clearly indicate that it is a modified version and the person(s) who
4199+% modified it. This indication should be in a prominent place, e.g. in the
4200+% top of the file. If possible a contact address, preferably by email,
4201+% should be given for these persons. If that is feasible the modifications
4202+% should be indicated in the source code.
4203+% ========================================================================
4204+% MODIFICATION HISTORY:
4205+% Sep 16, 1994
4206+% version 1.4: Correction for use with \reversemargin
4207+% Sep 29, 1994:
4208+% version 1.5: Added the \iftopfloat, \ifbotfloat and \iffloatpage commands
4209+% Oct 4, 1994:
4210+% version 1.6: Reset single spacing in headers/footers for use with
4211+% setspace.sty or doublespace.sty
4212+% Oct 4, 1994:
4213+% version 1.7: changed \let\@mkboth\markboth to
4214+% \def\@mkboth{\protect\markboth} to make it more robust
4215+% Dec 5, 1994:
4216+% version 1.8: corrections for amsbook/amsart: define \@chapapp and (more
4217+% importantly) use the \chapter/sectionmark definitions from ps@headings if
4218+% they exist (which should be true for all standard classes).
4219+% May 31, 1995:
4220+% version 1.9: The proposed \renewcommand{\headrulewidth}{\iffloatpage...
4221+% construction in the doc did not work properly with the fancyplain style.
4222+% June 1, 1995:
4223+% version 1.91: The definition of \@mkboth wasn't restored on subsequent
4224+% \pagestyle{fancy}'s.
4225+% June 1, 1995:
4226+% version 1.92: The sequence \pagestyle{fancyplain} \pagestyle{plain}
4227+% \pagestyle{fancy} would erroneously select the plain version.
4228+% June 1, 1995:
4229+% version 1.93: \fancypagestyle command added.
4230+% Dec 11, 1995:
4231+% version 1.94: suggested by Conrad Hughes <chughes@maths.tcd.ie>
4232+% CJCH, Dec 11, 1995: added \footruleskip to allow control over footrule
4233+% position (old hardcoded value of .3\normalbaselineskip is far too high
4234+% when used with very small footer fonts).
4235+% Jan 31, 1996:
4236+% version 1.95: call \@normalsize in the reset code if that is defined,
4237+% otherwise \normalsize.
4238+% this is to solve a problem with ucthesis.cls, as this doesn't
4239+% define \@currsize. Unfortunately for latex209 calling \normalsize doesn't
4240+% work as this is optimized to do very little, so there \@normalsize should
4241+% be called. Hopefully this code works for all versions of LaTeX known to
4242+% mankind.
4243+% April 25, 1996:
4244+% version 1.96: initialize \headwidth to a magic (negative) value to catch
4245+% most common cases that people change it before calling \pagestyle{fancy}.
4246+% Note it can't be initialized when reading in this file, because
4247+% \textwidth could be changed afterwards. This is quite probable.
4248+% We also switch to \MakeUppercase rather than \uppercase and introduce a
4249+% \nouppercase command for use in headers. and footers.
4250+% May 3, 1996:
4251+% version 1.97: Two changes:
4252+% 1. Undo the change in version 1.8 (using the pagestyle{headings} defaults
4253+% for the chapter and section marks. The current version of amsbook and
4254+% amsart classes don't seem to need them anymore. Moreover the standard
4255+% latex classes don't use \markboth if twoside isn't selected, and this is
4256+% confusing as \leftmark doesn't work as expected.
4257+% 2. include a call to \ps@empty in ps@@fancy. This is to solve a problem
4258+% in the amsbook and amsart classes, that make global changes to \topskip,
4259+% which are reset in \ps@empty. Hopefully this doesn't break other things.
4260+% May 7, 1996:
4261+% version 1.98:
4262+% Added % after the line \def\nouppercase
4263+% May 7, 1996:
4264+% version 1.99: This is the alpha version of fancyhdr 2.0
4265+% Introduced the new commands \fancyhead, \fancyfoot, and \fancyhf.
4266+% Changed \headrulewidth, \footrulewidth, \footruleskip to
4267+% macros rather than length parameters, In this way they can be
4268+% conditionalized and they don't consume length registers. There is no need
4269+% to have them as length registers unless you want to do calculations with
4270+% them, which is unlikely. Note that this may make some uses of them
4271+% incompatible (i.e. if you have a file that uses \setlength or \xxxx=)
4272+% May 10, 1996:
4273+% version 1.99a:
4274+% Added a few more % signs
4275+% May 10, 1996:
4276+% version 1.99b:
4277+% Changed the syntax of \f@nfor to be resistent to catcode changes of :=
4278+% Removed the [1] from the defs of \lhead etc. because the parameter is
4279+% consumed by the \@[xy]lhead etc. macros.
4280+% June 24, 1997:
4281+% version 1.99c:
4282+% corrected \nouppercase to also include the protected form of \MakeUppercase
4283+% \global added to manipulation of \headwidth.
4284+% \iffootnote command added.
4285+% Some comments added about \@fancyhead and \@fancyfoot.
4286+% Aug 24, 1998
4287+% version 1.99d
4288+% Changed the default \ps@empty to \ps@@empty in order to allow
4289+% \fancypagestyle{empty} redefinition.
4290+
4291+\let\fancy@def\gdef
4292+
4293+\def\if@mpty#1#2#3{\def\temp@ty{#1}\ifx\@empty\temp@ty #2\else#3\fi}
4294+
4295+% Usage: \@forc \var{charstring}{command to be executed for each char}
4296+% This is similar to LaTeX's \@tfor, but expands the charstring.
4297+
4298+\def\@forc#1#2#3{\expandafter\f@rc\expandafter#1\expandafter{#2}{#3}}
4299+\def\f@rc#1#2#3{\def\temp@ty{#2}\ifx\@empty\temp@ty\else
4300+ \f@@rc#1#2\f@@rc{#3}\fi}
4301+\def\f@@rc#1#2#3\f@@rc#4{\def#1{#2}#4\f@rc#1{#3}{#4}}
4302+
4303+% Usage: \f@nfor\name:=list\do{body}
4304+% Like LaTeX's \@for but an empty list is treated as a list with an empty
4305+% element
4306+
4307+\newcommand{\f@nfor}[3]{\edef\@fortmp{#2}%
4308+ \expandafter\@forloop#2,\@nil,\@nil\@@#1{#3}}
4309+
4310+% Usage: \def@ult \cs{defaults}{argument}
4311+% sets \cs to the characters from defaults appearing in argument
4312+% or defaults if it would be empty. All characters are lowercased.
4313+
4314+\newcommand\def@ult[3]{%
4315+ \edef\temp@a{\lowercase{\edef\noexpand\temp@a{#3}}}\temp@a
4316+ \def#1{}%
4317+ \@forc\tmpf@ra{#2}%
4318+ {\expandafter\if@in\tmpf@ra\temp@a{\edef#1{#1\tmpf@ra}}{}}%
4319+ \ifx\@empty#1\def#1{#2}\fi}
4320+%
4321+% \if@in <char><set><truecase><falsecase>
4322+%
4323+\newcommand{\if@in}[4]{%
4324+ \edef\temp@a{#2}\def\temp@b##1#1##2\temp@b{\def\temp@b{##1}}%
4325+ \expandafter\temp@b#2#1\temp@b\ifx\temp@a\temp@b #4\else #3\fi}
4326+
4327+\newcommand{\fancyhead}{\@ifnextchar[{\f@ncyhf h}{\f@ncyhf h[]}}
4328+\newcommand{\fancyfoot}{\@ifnextchar[{\f@ncyhf f}{\f@ncyhf f[]}}
4329+\newcommand{\fancyhf}{\@ifnextchar[{\f@ncyhf {}}{\f@ncyhf {}[]}}
4330+
4331+% The header and footer fields are stored in command sequences with
4332+% names of the form: \f@ncy<x><y><z> with <x> for [eo], <y> form [lcr]
4333+% and <z> from [hf].
4334+
4335+\def\f@ncyhf#1[#2]#3{%
4336+ \def\temp@c{}%
4337+ \@forc\tmpf@ra{#2}%
4338+ {\expandafter\if@in\tmpf@ra{eolcrhf,EOLCRHF}%
4339+ {}{\edef\temp@c{\temp@c\tmpf@ra}}}%
4340+ \ifx\@empty\temp@c\else
4341+ \ifx\PackageError\undefined
4342+ \errmessage{Illegal char `\temp@c' in fancyhdr argument:
4343+ [#2]}\else
4344+ \PackageError{Fancyhdr}{Illegal char `\temp@c' in fancyhdr argument:
4345+ [#2]}{}\fi
4346+ \fi
4347+ \f@nfor\temp@c{#2}%
4348+ {\def@ult\f@@@eo{eo}\temp@c
4349+ \def@ult\f@@@lcr{lcr}\temp@c
4350+ \def@ult\f@@@hf{hf}{#1\temp@c}%
4351+ \@forc\f@@eo\f@@@eo
4352+ {\@forc\f@@lcr\f@@@lcr
4353+ {\@forc\f@@hf\f@@@hf
4354+ {\expandafter\fancy@def\csname
4355+ f@ncy\f@@eo\f@@lcr\f@@hf\endcsname
4356+ {#3}}}}}}
4357+
4358+% Fancyheadings version 1 commands. These are more or less deprecated,
4359+% but they continue to work.
4360+
4361+\newcommand{\lhead}{\@ifnextchar[{\@xlhead}{\@ylhead}}
4362+\def\@xlhead[#1]#2{\fancy@def\f@ncyelh{#1}\fancy@def\f@ncyolh{#2}}
4363+\def\@ylhead#1{\fancy@def\f@ncyelh{#1}\fancy@def\f@ncyolh{#1}}
4364+
4365+\newcommand{\chead}{\@ifnextchar[{\@xchead}{\@ychead}}
4366+\def\@xchead[#1]#2{\fancy@def\f@ncyech{#1}\fancy@def\f@ncyoch{#2}}
4367+\def\@ychead#1{\fancy@def\f@ncyech{#1}\fancy@def\f@ncyoch{#1}}
4368+
4369+\newcommand{\rhead}{\@ifnextchar[{\@xrhead}{\@yrhead}}
4370+\def\@xrhead[#1]#2{\fancy@def\f@ncyerh{#1}\fancy@def\f@ncyorh{#2}}
4371+\def\@yrhead#1{\fancy@def\f@ncyerh{#1}\fancy@def\f@ncyorh{#1}}
4372+
4373+\newcommand{\lfoot}{\@ifnextchar[{\@xlfoot}{\@ylfoot}}
4374+\def\@xlfoot[#1]#2{\fancy@def\f@ncyelf{#1}\fancy@def\f@ncyolf{#2}}
4375+\def\@ylfoot#1{\fancy@def\f@ncyelf{#1}\fancy@def\f@ncyolf{#1}}
4376+
4377+\newcommand{\cfoot}{\@ifnextchar[{\@xcfoot}{\@ycfoot}}
4378+\def\@xcfoot[#1]#2{\fancy@def\f@ncyecf{#1}\fancy@def\f@ncyocf{#2}}
4379+\def\@ycfoot#1{\fancy@def\f@ncyecf{#1}\fancy@def\f@ncyocf{#1}}
4380+
4381+\newcommand{\rfoot}{\@ifnextchar[{\@xrfoot}{\@yrfoot}}
4382+\def\@xrfoot[#1]#2{\fancy@def\f@ncyerf{#1}\fancy@def\f@ncyorf{#2}}
4383+\def\@yrfoot#1{\fancy@def\f@ncyerf{#1}\fancy@def\f@ncyorf{#1}}
4384+
4385+\newdimen\headwidth
4386+\newcommand{\headrulewidth}{0.4pt}
4387+\newcommand{\footrulewidth}{\z@skip}
4388+\newcommand{\footruleskip}{.3\normalbaselineskip}
4389+
4390+% Fancyplain stuff shouldn't be used anymore (rather
4391+% \fancypagestyle{plain} should be used), but it must be present for
4392+% compatibility reasons.
4393+
4394+\newcommand{\plainheadrulewidth}{\z@skip}
4395+\newcommand{\plainfootrulewidth}{\z@skip}
4396+\newif\if@fancyplain \@fancyplainfalse
4397+\def\fancyplain#1#2{\if@fancyplain#1\else#2\fi}
4398+
4399+\headwidth=-123456789sp %magic constant
4400+
4401+% Command to reset various things in the headers:
4402+% a.o. single spacing (taken from setspace.sty)
4403+% and the catcode of ^^M (so that epsf files in the header work if a
4404+% verbatim crosses a page boundary)
4405+% It also defines a \nouppercase command that disables \uppercase and
4406+% \Makeuppercase. It can only be used in the headers and footers.
4407+\def\fancy@reset{\restorecr
4408+ \def\baselinestretch{1}%
4409+ \def\nouppercase##1{{\let\uppercase\relax\let\MakeUppercase\relax
4410+ \expandafter\let\csname MakeUppercase \endcsname\relax##1}}%
4411+ \ifx\undefined\@newbaseline% NFSS not present; 2.09 or 2e
4412+ \ifx\@normalsize\undefined \normalsize % for ucthesis.cls
4413+ \else \@normalsize \fi
4414+ \else% NFSS (2.09) present
4415+ \@newbaseline%
4416+ \fi}
4417+
4418+% Initialization of the head and foot text.
4419+
4420+% The default values still contain \fancyplain for compatibility.
4421+\fancyhf{} % clear all
4422+% lefthead empty on ``plain'' pages, \rightmark on even, \leftmark on odd pages
4423+% evenhead empty on ``plain'' pages, \leftmark on even, \rightmark on odd pages
4424+\fancyhead[el,or]{\fancyplain{}{\sl\rightmark}}
4425+\fancyhead[er,ol]{\fancyplain{}{\sl\leftmark}}
4426+\fancyfoot[c]{\rm\thepage} % page number
4427+
4428+% Put together a header or footer given the left, center and
4429+% right text, fillers at left and right and a rule.
4430+% The \lap commands put the text into an hbox of zero size,
4431+% so overlapping text does not generate an errormessage.
4432+% These macros have 5 parameters:
4433+% 1. \@lodd or \@rodd % This determines at which side the header will stick
4434+% out.
4435+% 2. \f@ncyolh, \f@ncyelh, \f@ncyolf or \f@ncyelf. This is the left component.
4436+% 3. \f@ncyoch, \f@ncyech, \f@ncyocf or \f@ncyecf. This is the middle comp.
4437+% 4. \f@ncyorh, \f@ncyerh, \f@ncyorf or \f@ncyerf. This is the right component.
4438+% 5. \@lodd or \@rodd % This determines at which side the header will stick
4439+% out. This is the reverse of parameter nr. 1. One of them is always
4440+% \relax and the other one is \hss (after expansion).
4441+
4442+\def\@fancyhead#1#2#3#4#5{#1\hbox to\headwidth{\fancy@reset\vbox{\hbox
4443+{\rlap{\parbox[b]{\headwidth}{\raggedright#2\strut}}\hfill
4444+\parbox[b]{\headwidth}{\centering#3\strut}\hfill
4445+\llap{\parbox[b]{\headwidth}{\raggedleft#4\strut}}}\headrule}}#5}
4446+
4447+\def\@fancyfoot#1#2#3#4#5{#1\hbox to\headwidth{\fancy@reset\vbox{\footrule
4448+\hbox{\rlap{\parbox[t]{\headwidth}{\raggedright#2\strut}}\hfill
4449+\parbox[t]{\headwidth}{\centering#3\strut}\hfill
4450+\llap{\parbox[t]{\headwidth}{\raggedleft#4\strut}}}}}#5}
4451+
4452+\def\headrule{{\if@fancyplain\let\headrulewidth\plainheadrulewidth\fi
4453+\hrule\@height\headrulewidth\@width\headwidth \vskip-\headrulewidth}}
4454+
4455+\def\footrule{{\if@fancyplain\let\footrulewidth\plainfootrulewidth\fi
4456+\vskip-\footruleskip\vskip-\footrulewidth
4457+\hrule\@width\headwidth\@height\footrulewidth\vskip\footruleskip}}
4458+
4459+\def\ps@fancy{%
4460+\@ifundefined{@chapapp}{\let\@chapapp\chaptername}{}%for amsbook
4461+%
4462+% Define \MakeUppercase for old LaTeXen.
4463+% Note: we used \def rather than \let, so that \let\uppercase\relax (from
4464+% the version 1 documentation) will still work.
4465+%
4466+\@ifundefined{MakeUppercase}{\def\MakeUppercase{\uppercase}}{}%
4467+\@ifundefined{chapter}{\def\sectionmark##1{\markboth
4468+{\MakeUppercase{\ifnum \c@secnumdepth>\z@
4469+ \thesection\hskip 1em\relax \fi ##1}}{}}%
4470+\def\subsectionmark##1{\markright {\ifnum \c@secnumdepth >\@ne
4471+ \thesubsection\hskip 1em\relax \fi ##1}}}%
4472+{\def\chaptermark##1{\markboth {\MakeUppercase{\ifnum \c@secnumdepth>\m@ne
4473+ \@chapapp\ \thechapter. \ \fi ##1}}{}}%
4474+\def\sectionmark##1{\markright{\MakeUppercase{\ifnum \c@secnumdepth >\z@
4475+ \thesection. \ \fi ##1}}}}%
4476+%\csname ps@headings\endcsname % use \ps@headings defaults if they exist
4477+\ps@@fancy
4478+\gdef\ps@fancy{\@fancyplainfalse\ps@@fancy}%
4479+% Initialize \headwidth if the user didn't
4480+%
4481+\ifdim\headwidth<0sp
4482+%
4483+% This catches the case that \headwidth hasn't been initialized and the
4484+% case that the user added something to \headwidth in the expectation that
4485+% it was initialized to \textwidth. We compensate this now. This loses if
4486+% the user intended to multiply it by a factor. But that case is more
4487+% likely done by saying something like \headwidth=1.2\textwidth.
4488+% The doc says you have to change \headwidth after the first call to
4489+% \pagestyle{fancy}. This code is just to catch the most common cases were
4490+% that requirement is violated.
4491+%
4492+ \global\advance\headwidth123456789sp\global\advance\headwidth\textwidth
4493+\fi}
4494+\def\ps@fancyplain{\ps@fancy \let\ps@plain\ps@plain@fancy}
4495+\def\ps@plain@fancy{\@fancyplaintrue\ps@@fancy}
4496+\let\ps@@empty\ps@empty
4497+\def\ps@@fancy{%
4498+\ps@@empty % This is for amsbook/amsart, which do strange things with \topskip
4499+\def\@mkboth{\protect\markboth}%
4500+\def\@oddhead{\@fancyhead\@lodd\f@ncyolh\f@ncyoch\f@ncyorh\@rodd}%
4501+\def\@oddfoot{\@fancyfoot\@lodd\f@ncyolf\f@ncyocf\f@ncyorf\@rodd}%
4502+\def\@evenhead{\@fancyhead\@rodd\f@ncyelh\f@ncyech\f@ncyerh\@lodd}%
4503+\def\@evenfoot{\@fancyfoot\@rodd\f@ncyelf\f@ncyecf\f@ncyerf\@lodd}%
4504+}
4505+\def\@lodd{\if@reversemargin\hss\else\relax\fi}
4506+\def\@rodd{\if@reversemargin\relax\else\hss\fi}
4507+
4508+\newif\iffootnote
4509+\let\latex@makecol\@makecol
4510+\def\@makecol{\ifvoid\footins\footnotetrue\else\footnotefalse\fi
4511+\let\topfloat\@toplist\let\botfloat\@botlist\latex@makecol}
4512+\def\iftopfloat#1#2{\ifx\topfloat\empty #2\else #1\fi}
4513+\def\ifbotfloat#1#2{\ifx\botfloat\empty #2\else #1\fi}
4514+\def\iffloatpage#1#2{\if@fcolmade #1\else #2\fi}
4515+
4516+\newcommand{\fancypagestyle}[2]{%
4517+ \@namedef{ps@#1}{\let\fancy@def\def#2\relax\ps@fancy}}
4518
4519=== added file 'trunk/Doc/Manual/fncychap.sty'
4520--- trunk/Doc/Manual/fncychap.sty 1970-01-01 00:00:00 +0000
4521+++ trunk/Doc/Manual/fncychap.sty 2013-05-08 08:43:26 +0000
4522@@ -0,0 +1,433 @@
4523+%%% Derived from the original fncychap.sty,
4524+%%% but changed ``TWELV'' to ``TWELVE''.
4525+
4526+%%% Copyright Ulf A. Lindgren
4527+%%% Department of Applied Electronics
4528+%%% Chalmers University of Technology
4529+%%% S-412 96 Gothenburg, Sweden
4530+%%% E-mail lindgren@ae.chalmers.se
4531+%%%
4532+%%% Note Permission is granted to modify this file under
4533+%%% the condition that it is saved using another
4534+%%% file and package name.
4535+%%%
4536+%%% Revision 1.1
4537+%%%
4538+%%% Jan. 8th Modified package name base date option
4539+%%% Jan. 22th Modified FmN and FmTi for error in book.cls
4540+%%% \MakeUppercase{#}->{\MakeUppercase#}
4541+%%% Apr. 6th Modified Lenny option to prevent undesired
4542+%%% skip of line.
4543+%%% Nov. 8th Fixed \@chapapp for AMS
4544+%%% Feb. 11th Fixed appendix problem related to Bjarne
4545+%%% Last modified Feb. 11th 1998
4546+
4547+\NeedsTeXFormat{LaTeX2e}[1995/12/01]
4548+\ProvidesPackage{fncychap}
4549+ [1997/04/06 v1.11
4550+ LaTeX package (Revised chapters)]
4551+
4552+%%%% DEFINITION OF Chapapp variables
4553+\newcommand{\CNV}{\huge\bfseries}
4554+\newcommand{\ChNameVar}[1]{\renewcommand{\CNV}{#1}}
4555+
4556+
4557+%%%% DEFINITION OF TheChapter variables
4558+\newcommand{\CNoV}{\huge\bfseries}
4559+\newcommand{\ChNumVar}[1]{\renewcommand{\CNoV}{#1}}
4560+
4561+\newif\ifUCN
4562+\UCNfalse
4563+\newif\ifLCN
4564+\LCNfalse
4565+\def\ChNameLowerCase{\LCNtrue\UCNfalse}
4566+\def\ChNameUpperCase{\UCNtrue\LCNfalse}
4567+\def\ChNameAsIs{\UCNfalse\LCNfalse}
4568+
4569+%%%%% Fix for AMSBook 971008
4570+
4571+\@ifundefined{@chapapp}{\let\@chapapp\chaptername}{}
4572+
4573+
4574+%%%%% Fix for Bjarne and appendix 980211
4575+
4576+\newif\ifinapp
4577+\inappfalse
4578+\renewcommand\appendix{\par
4579+ \setcounter{chapter}{0}%
4580+ \setcounter{section}{0}%
4581+ \inapptrue%
4582+ \renewcommand\@chapapp{\appendixname}%
4583+ \renewcommand\thechapter{\@Alph\c@chapter}}
4584+
4585+%%%%%
4586+
4587+\newcommand{\FmN}[1]{%
4588+\ifUCN
4589+ {\MakeUppercase#1}\LCNfalse
4590+\else
4591+ \ifLCN
4592+ {\MakeLowercase#1}\UCNfalse
4593+ \else #1
4594+ \fi
4595+\fi}
4596+
4597+
4598+%%%% DEFINITION OF Title variables
4599+\newcommand{\CTV}{\Huge\bfseries}
4600+\newcommand{\ChTitleVar}[1]{\renewcommand{\CTV}{#1}}
4601+
4602+%%%% DEFINITION OF the basic rule width
4603+\newlength{\RW}
4604+\setlength{\RW}{1pt}
4605+\newcommand{\ChRuleWidth}[1]{\setlength{\RW}{#1}}
4606+
4607+\newif\ifUCT
4608+\UCTfalse
4609+\newif\ifLCT
4610+\LCTfalse
4611+\def\ChTitleLowerCase{\LCTtrue\UCTfalse}
4612+\def\ChTitleUpperCase{\UCTtrue\LCTfalse}
4613+\def\ChTitleAsIs{\UCTfalse\LCTfalse}
4614+\newcommand{\FmTi}[1]{%
4615+\ifUCT
4616+
4617+ {\MakeUppercase#1}\LCTfalse
4618+\else
4619+ \ifLCT
4620+ {\MakeLowercase#1}\UCTfalse
4621+ \else #1
4622+ \fi
4623+\fi}
4624+
4625+
4626+
4627+\newlength{\mylen}
4628+\newlength{\myhi}
4629+\newlength{\px}
4630+\newlength{\py}
4631+\newlength{\pyy}
4632+\newlength{\pxx}
4633+
4634+
4635+\def\mghrulefill#1{\leavevmode\leaders\hrule\@height #1\hfill\kern\z@}
4636+
4637+\newcommand{\DOCH}{%
4638+ \CNV\FmN{\@chapapp}\space \CNoV\thechapter
4639+ \par\nobreak
4640+ \vskip 20\p@
4641+ }
4642+\newcommand{\DOTI}[1]{%
4643+ \CTV\FmTi{#1}\par\nobreak
4644+ \vskip 40\p@
4645+ }
4646+\newcommand{\DOTIS}[1]{%
4647+ \CTV\FmTi{#1}\par\nobreak
4648+ \vskip 40\p@
4649+ }
4650+
4651+%%%%%% SONNY DEF
4652+
4653+\DeclareOption{Sonny}{%
4654+ \ChNameVar{\Large\sf}
4655+ \ChNumVar{\Huge}
4656+ \ChTitleVar{\Large\sf}
4657+ \ChRuleWidth{0.5pt}
4658+ \ChNameUpperCase
4659+ \renewcommand{\DOCH}{%
4660+ \raggedleft
4661+ \CNV\FmN{\@chapapp}\space \CNoV\thechapter
4662+ \par\nobreak
4663+ \vskip 40\p@}
4664+ \renewcommand{\DOTI}[1]{%
4665+ \CTV\raggedleft\mghrulefill{\RW}\par\nobreak
4666+ \vskip 5\p@
4667+ \CTV\FmTi{#1}\par\nobreak
4668+ \mghrulefill{\RW}\par\nobreak
4669+ \vskip 40\p@}
4670+ \renewcommand{\DOTIS}[1]{%
4671+ \CTV\raggedleft\mghrulefill{\RW}\par\nobreak
4672+ \vskip 5\p@
4673+ \CTV\FmTi{#1}\par\nobreak
4674+ \mghrulefill{\RW}\par\nobreak
4675+ \vskip 40\p@}
4676+}
4677+
4678+%%%%%% LENNY DEF
4679+
4680+\DeclareOption{Lenny}{%
4681+
4682+ \ChNameVar{\fontsize{14}{16}\usefont{OT1}{phv}{m}{n}\selectfont}
4683+ \ChNumVar{\fontsize{60}{62}\usefont{OT1}{ptm}{m}{n}\selectfont}
4684+ \ChTitleVar{\Huge\bfseries\rm}
4685+ \ChRuleWidth{1pt}
4686+ \renewcommand{\DOCH}{%
4687+ \settowidth{\px}{\CNV\FmN{\@chapapp}}
4688+ \addtolength{\px}{2pt}
4689+ \settoheight{\py}{\CNV\FmN{\@chapapp}}
4690+ \addtolength{\py}{1pt}
4691+
4692+ \settowidth{\mylen}{\CNV\FmN{\@chapapp}\space\CNoV\thechapter}
4693+ \addtolength{\mylen}{1pt}
4694+ \settowidth{\pxx}{\CNoV\thechapter}
4695+ \addtolength{\pxx}{-1pt}
4696+
4697+ \settoheight{\pyy}{\CNoV\thechapter}
4698+ \addtolength{\pyy}{-2pt}
4699+ \setlength{\myhi}{\pyy}
4700+ \addtolength{\myhi}{-1\py}
4701+ \par
4702+ \parbox[b]{\textwidth}{%
4703+ \rule[\py]{\RW}{\myhi}%
4704+ \hskip -\RW%
4705+ \rule[\pyy]{\px}{\RW}%
4706+ \hskip -\px%
4707+ \raggedright%
4708+ \CNV\FmN{\@chapapp}\space\CNoV\thechapter%
4709+ \hskip1pt%
4710+ \mghrulefill{\RW}%
4711+ \rule{\RW}{\pyy}\par\nobreak%
4712+ \vskip -\baselineskip%
4713+ \vskip -\pyy%
4714+ \hskip \mylen%
4715+ \mghrulefill{\RW}\par\nobreak%
4716+ \vskip \pyy}%
4717+ \vskip 20\p@}
4718+
4719+
4720+ \renewcommand{\DOTI}[1]{%
4721+ \raggedright
4722+ \CTV\FmTi{#1}\par\nobreak
4723+ \vskip 40\p@}
4724+
4725+ \renewcommand{\DOTIS}[1]{%
4726+ \raggedright
4727+ \CTV\FmTi{#1}\par\nobreak
4728+ \vskip 40\p@}
4729+ }
4730+
4731+
4732+%%%%%%% GLENN DEF
4733+
4734+
4735+\DeclareOption{Glenn}{%
4736+ \ChNameVar{\bfseries\Large\sf}
4737+ \ChNumVar{\Huge}
4738+ \ChTitleVar{\bfseries\Large\rm}
4739+ \ChRuleWidth{1pt}
4740+ \ChNameUpperCase
4741+ \ChTitleUpperCase
4742+ \renewcommand{\DOCH}{%
4743+ \settoheight{\myhi}{\CTV\FmTi{Test}}
4744+ \setlength{\py}{\baselineskip}
4745+ \addtolength{\py}{\RW}
4746+ \addtolength{\py}{\myhi}
4747+ \setlength{\pyy}{\py}
4748+ \addtolength{\pyy}{-1\RW}
4749+
4750+ \raggedright
4751+ \CNV\FmN{\@chapapp}\space\CNoV\thechapter
4752+ \hskip 3pt\mghrulefill{\RW}\rule[-1\pyy]{2\RW}{\py}\par\nobreak}
4753+
4754+ \renewcommand{\DOTI}[1]{%
4755+ \addtolength{\pyy}{-4pt}
4756+ \settoheight{\myhi}{\CTV\FmTi{#1}}
4757+ \addtolength{\myhi}{\py}
4758+ \addtolength{\myhi}{-1\RW}
4759+ \vskip -1\pyy
4760+ \rule{2\RW}{\myhi}\mghrulefill{\RW}\hskip 2pt
4761+ \raggedleft\CTV\FmTi{#1}\par\nobreak
4762+ \vskip 80\p@}
4763+
4764+ \renewcommand{\DOTIS}[1]{%
4765+ \setlength{\py}{10pt}
4766+ \setlength{\pyy}{\py}
4767+ \addtolength{\pyy}{\RW}
4768+ \setlength{\myhi}{\baselineskip}
4769+ \addtolength{\myhi}{\pyy}
4770+ \mghrulefill{\RW}\rule[-1\py]{2\RW}{\pyy}\par\nobreak
4771+% \addtolength{}{}
4772+\vskip -1\baselineskip
4773+ \rule{2\RW}{\myhi}\mghrulefill{\RW}\hskip 2pt
4774+ \raggedleft\CTV\FmTi{#1}\par\nobreak
4775+ \vskip 60\p@}
4776+ }
4777+
4778+%%%%%%% CONNY DEF
4779+
4780+\DeclareOption{Conny}{%
4781+ \ChNameUpperCase
4782+ \ChTitleUpperCase
4783+ \ChNameVar{\centering\Huge\rm\bfseries}
4784+ \ChNumVar{\Huge}
4785+ \ChTitleVar{\centering\Huge\rm}
4786+ \ChRuleWidth{2pt}
4787+
4788+ \renewcommand{\DOCH}{%
4789+ \mghrulefill{3\RW}\par\nobreak
4790+ \vskip -0.5\baselineskip
4791+ \mghrulefill{\RW}\par\nobreak
4792+ \CNV\FmN{\@chapapp}\space \CNoV\thechapter
4793+ \par\nobreak
4794+ \vskip -0.5\baselineskip
4795+ }
4796+ \renewcommand{\DOTI}[1]{%
4797+ \mghrulefill{\RW}\par\nobreak
4798+ \CTV\FmTi{#1}\par\nobreak
4799+ \vskip 60\p@
4800+ }
4801+ \renewcommand{\DOTIS}[1]{%
4802+ \mghrulefill{\RW}\par\nobreak
4803+ \CTV\FmTi{#1}\par\nobreak
4804+ \vskip 60\p@
4805+ }
4806+ }
4807+
4808+%%%%%%% REJNE DEF
4809+
4810+\DeclareOption{Rejne}{%
4811+
4812+ \ChNameUpperCase
4813+ \ChTitleUpperCase
4814+ \ChNameVar{\centering\Large\rm}
4815+ \ChNumVar{\Huge}
4816+ \ChTitleVar{\centering\Huge\rm}
4817+ \ChRuleWidth{1pt}
4818+ \renewcommand{\DOCH}{%
4819+ \settoheight{\py}{\CNoV\thechapter}
4820+ \addtolength{\py}{-1pt}
4821+ \CNV\FmN{\@chapapp}\par\nobreak
4822+ \vskip 20\p@
4823+ \setlength{\myhi}{2\baselineskip}
4824+ \setlength{\px}{\myhi}
4825+ \addtolength{\px}{-1\RW}
4826+ \rule[-1\px]{\RW}{\myhi}\mghrulefill{\RW}\hskip
4827+ 10pt\raisebox{-0.5\py}{\CNoV\thechapter}\hskip
4828+10pt\mghrulefill{\RW}\rule[-1\px]{\RW}{\myhi}\par\nobreak
4829+ \vskip -1\p@
4830+ }
4831+ \renewcommand{\DOTI}[1]{%
4832+ \setlength{\mylen}{\textwidth}
4833+ \addtolength{\mylen}{-2\RW}
4834+ {\vrule width\RW}\parbox{\mylen}{\CTV\FmTi{#1}}{\vrule
4835+width\RW}\par\nobreak
4836+ \vskip
4837+-1pt\rule{\RW}{2\baselineskip}\mghrulefill{\RW}\rule{\RW}{2\baselineskip}
4838+ \vskip 60\p@
4839+ }
4840+ \renewcommand{\DOTIS}[1]{%
4841+ \setlength{\py}{\fboxrule}
4842+ \setlength{\fboxrule}{\RW}
4843+ \setlength{\mylen}{\textwidth}
4844+ \addtolength{\mylen}{-2\RW}
4845+ \fbox{\parbox{\mylen}{\vskip
4846+2\baselineskip\CTV\FmTi{#1}\par\nobreak\vskip \baselineskip}}
4847+ \setlength{\fboxrule}{\py}
4848+ \vskip 60\p@
4849+ }
4850+ }
4851+
4852+
4853+%%%%%%% BJARNE DEF
4854+
4855+\DeclareOption{Bjarne}{%
4856+ \ChNameUpperCase
4857+ \ChTitleUpperCase
4858+ \ChNameVar{\raggedleft\normalsize\rm}
4859+ \ChNumVar{\raggedleft \bfseries\Large}
4860+ \ChTitleVar{\raggedleft \Large\rm}
4861+ \ChRuleWidth{1pt}
4862+
4863+
4864+%% Note thechapter -> c@chapter fix appendix bug
4865+
4866+ \newcounter{AlphaCnt}
4867+ \newcounter{AlphaDecCnt}
4868+ \newcommand{\AlphaNo}{%
4869+ \ifcase\number\theAlphaCnt
4870+ \ifnum\c@chapter=0
4871+ ZERO\else{}\fi
4872+ \or ONE\or TWO\or THREE\or FOUR\or FIVE
4873+ \or SIX\or SEVEN\or EIGHT\or NINE\or TEN
4874+ \or ELEVEN\or TWELVE\or THIRTEEN\or FOURTEEN\or FIFTEEN
4875+ \or SIXTEEN\or SEVENTEEN\or EIGHTEEN\or NINETEEN\fi
4876+}
4877+
4878+ \newcommand{\AlphaDecNo}{%
4879+ \setcounter{AlphaDecCnt}{0}
4880+ \@whilenum\number\theAlphaCnt>0\do
4881+ {\addtocounter{AlphaCnt}{-10}
4882+ \addtocounter{AlphaDecCnt}{1}}
4883+ \ifnum\number\theAlphaCnt=0
4884+ \else
4885+ \addtocounter{AlphaDecCnt}{-1}
4886+ \addtocounter{AlphaCnt}{10}
4887+ \fi
4888+
4889+
4890+ \ifcase\number\theAlphaDecCnt\or TEN\or TWENTY\or THIRTY\or
4891+ FORTY\or FIFTY\or SIXTY\or SEVENTY\or EIGHTY\or NINETY\fi
4892+ }
4893+ \newcommand{\TheAlphaChapter}{%
4894+
4895+ \ifinapp
4896+ \thechapter
4897+ \else
4898+ \setcounter{AlphaCnt}{\c@chapter}
4899+ \ifnum\c@chapter<20
4900+ \AlphaNo
4901+ \else
4902+ \AlphaDecNo\AlphaNo
4903+ \fi
4904+ \fi
4905+ }
4906+ \renewcommand{\DOCH}{%
4907+ \mghrulefill{\RW}\par\nobreak
4908+ \CNV\FmN{\@chapapp}\par\nobreak
4909+ \CNoV\TheAlphaChapter\par\nobreak
4910+ \vskip -1\baselineskip\vskip 5pt\mghrulefill{\RW}\par\nobreak
4911+ \vskip 20\p@
4912+ }
4913+ \renewcommand{\DOTI}[1]{%
4914+ \CTV\FmTi{#1}\par\nobreak
4915+ \vskip 40\p@
4916+ }
4917+ \renewcommand{\DOTIS}[1]{%
4918+ \CTV\FmTi{#1}\par\nobreak
4919+ \vskip 40\p@
4920+ }
4921+}
4922+
4923+\DeclareOption*{%
4924+ \PackageWarning{fancychapter}{unknown style option}
4925+ }
4926+
4927+\ProcessOptions* \relax
4928+
4929+\def\@makechapterhead#1{%
4930+ \vspace*{50\p@}%
4931+ {\parindent \z@ \raggedright \normalfont
4932+ \ifnum \c@secnumdepth >\m@ne
4933+ \DOCH
4934+ \fi
4935+ \interlinepenalty\@M
4936+ \DOTI{#1}
4937+ }}
4938+\def\@schapter#1{\if@twocolumn
4939+ \@topnewpage[\@makeschapterhead{#1}]%
4940+ \else
4941+ \@makeschapterhead{#1}%
4942+ \@afterheading
4943+ \fi}
4944+\def\@makeschapterhead#1{%
4945+ \vspace*{50\p@}%
4946+ {\parindent \z@ \raggedright
4947+ \normalfont
4948+ \interlinepenalty\@M
4949+ \DOTIS{#1}
4950+ \vskip 40\p@
4951+ }}
4952+
4953+\endinput
4954+
4955+
4956
4957=== added file 'trunk/Doc/Manual/geo-file.tex'
4958--- trunk/Doc/Manual/geo-file.tex 1970-01-01 00:00:00 +0000
4959+++ trunk/Doc/Manual/geo-file.tex 2013-05-08 08:43:26 +0000
4960@@ -0,0 +1,135 @@
4961+\chapter{The Geometry File Format}
4962+\label{cha:geofileformat}
4963+
4964+\section{Introduction}
4965+The input file described here contains only the description of the model geometry. The material properties of the particles (density \dots) and interactions (spring constant, breaking distance \dots) are described in the script. In order to facilitate this, both particles and predefined connections/interactions have tags.
4966+\subsubsection*{Rationale:}
4967+\begin{itemize}
4968+\item Makes it possible to change the properties
4969+independently from the geometries, for example in order to easily run a suite of simulation with identical geometries but varying material properties.
4970+\end{itemize}
4971+The input files are pure ASCII files formatted in the way described in the following sections.
4972+\subsubsection*{Rationale:}
4973+\begin{itemize}
4974+\item ASCII is preferred over binary format for portability and debugability reasons.
4975+\item Using some ``standard'' description language, i.e. XML seems
4976+ \begin{itemize}
4977+ \item unnecessary as the files are machine generated and read, which reduces the need for flexibility and verbosity
4978+ \item a suboptimal solution with respect to file size, i.e. a million particle file would grow quite large if XML was used \footnote{It would be quite large anyway, somewhere around 40--50 byte per particle and 15--20 byte per connection, i.e. a file describing a model consisting of $10^6$ part in a fully connected regular 3D lattice would have a size around 100MB. So we may look at using compressed (libz, libbz2) files at some later stage.}
4979+ \end{itemize}
4980+\end{itemize}
4981+
4982+
4983+\section{The File Format}
4984+
4985+The geometry file specifies the overall model geometry, the particle positions and geometries, the assignment of the particles to some particle groups and the initial connectivity between particles, i.e. the bonds. In case of spherical particles the per-particle geometry is reduced to just the particle radius.
4986+\subsection{File Structure}
4987+The geometry file consist of a header and 3 content sections:
4988+\begin{enumerate}
4989+\item The ``model geometry'' section which contains the containing volume(s) of the model and definition of circular (periodic) boundary conditions
4990+\item The ``particles'' section
4991+\item The ``connections'' section
4992+\end{enumerate}
4993+\subsection{Header}
4994+The header just contains an identifier for the file type and the version of the file.
4995+\begin{verbatim}
4996+LSMGeometry 1.2
4997+\end{verbatim}
4998+where \textsf{LSMGeometry} is the identifier and \textsf{1.2} the current version number.
4999+
5000+
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