Image and erase

Asked by Mithushan Soundaranathan on 2021-04-19

Hi,

How can I erase "walls" and the "plate" once my simulation is done (after o.pause). I also would like take a image of my simulation after o.pause.

Here is my code:

#!/usr/bin/env python
#encoding: ascii

# Testing of the Deformation Enginge with Luding Contact Law
# Modified Oedometric Test
# The reference paper [Haustein2017]

from __future__ import print_function
from yade import utils, plot, timing
from yade import pack
import pandas as pd

o = Omega()

# Physical parameters
fr = 0.3
rho = 2000
Diameter = 16.5e-3
r1 = Diameter
r2 = Diameter
k1 = 1005.0
kp = 10.0*k1
kc = k1 * 0.0
ks = k1 * 0.1
DeltaPMax = Diameter/3.0
Chi1 = 0.34

o.dt = 1.0e-5

particleMass = 4.0/3.0*math.pi*r1*r1*r1*rho

Vi1 = math.sqrt(k1/particleMass)*DeltaPMax*Chi1

PhiF1 = DeltaPMax*(kp-k1)*(r1+r2)/(kp*2*r1*r2)

#*************************************

# Add material
mat1 = O.materials.append(LudingMat(frictionAngle=fr, density=rho, k1=k1, kp=kp, ks=ks, kc=kc, PhiF=PhiF1, G0 = 0.0))

# Spheres for compression

sp=pack.SpherePack()
sp.makeCloud((-11.0*Diameter,-11.0*Diameter,-25*Diameter),(11*Diameter,11*Diameter,30.0*Diameter), rMean=Diameter/2.0,rRelFuzz=.18)
cyl = pack.inCylinder((0,0,0),(0,0,30*Diameter),11*Diameter-0.006)
sp = pack.filterSpherePack(cyl,sp,True,material=mat1)
sp.toSimulation(material=mat1)

##No of particles
count = 0
for b in O.bodies:
    if isinstance(b.shape, Sphere):
        count +=1

######################################################################
walls=O.bodies.append(yade.geom.facetCylinder((0,0,0),radius=11*Diameter,height=11*Diameter,segmentsNumber=20,wallMask=6,material=mat1))

df = pd.DataFrame(columns=['Cut_xy','Cut_z','Volume','Porosity'])
df.to_csv('PH101_rev.csv')
from csv import writer
def append_list_as_row(file_name, list_of_elem):
    # Open file in append mode
    with open(file_name, 'a+', newline='') as write_obj:
        # Create a writer object from csv module
        csv_writer = writer(write_obj)
        # Add contents of list as last row in the csv file
        csv_writer.writerow(list_of_elem)
# Add engines
o.engines = [
  ForceResetter(),
  InsertionSortCollider([Bo1_Sphere_Aabb(aabbEnlargeFactor=1.05),
                         Bo1_Wall_Aabb(),
                         Bo1_Facet_Aabb()
                         ]),
  InteractionLoop(
    [Ig2_Sphere_Sphere_ScGeom(interactionDetectionFactor=1.05),
     Ig2_Facet_Sphere_ScGeom(),
     Ig2_Wall_Sphere_ScGeom()],
    [Ip2_LudingMat_LudingMat_LudingPhys()],
    [Law2_ScGeom_LudingPhys_Basic()]
  ),
  NewtonIntegrator(damping=0.1, gravity=[0, 0, -9.81]),
  #VTKRecorder(fileName='vtk-',recorders=['all'],iterPeriod=10000),
  PyRunner(command='checkForce()', realPeriod=1, label="fCheck"),
  DeformControl(label="DefControl")
]

def checkForce():
    # at the very start, unbalanced force can be low as there is only few
    # contacts, but it does not mean the packing is stable
    if O.iter < 20000:
        return
    # the rest will be run only if unbalanced is < .1 (stabilized packing)
    timing.reset()
    if unbalancedForce() > 0.3:
        return
    # add plate at upper box side

    highSphere = 0.0
    for b in O.bodies:
        if highSphere < b.state.pos[2] and isinstance(b.shape, Sphere):
            highSphere = b.state.pos[2]
        else:
            pass

    O.bodies.append(wall(highSphere+0.5*Diameter, axis=2, sense=-1, material=mat1))
    # without this line, the plate variable would only exist inside this
    # function
    global plate
    plate = O.bodies[-1] # the last particles is the plate
    # Wall objects are "fixed" by default, i.e. not subject to forces
    # prescribing a velocity will therefore make it move at constant velocity
    # (downwards)
    plate.state.vel = (0, 0, -.1)
    # start plotting the data now, it was not interesting before
    O.engines = O.engines + [PyRunner(command='addPlotData()', iterPeriod=1000)]
    # next time, do not call this function anymore, but the next one
    # (unloadPlate) instead
    fCheck.command = 'unloadPlate()'

def unloadPlate():
    # if the force on plate exceeds maximum load, start unloading
    # if abs(O.forces.f(plate.id)[2]) > 5e-2:
    if abs(O.forces.f(plate.id)[2]) > 4.3e3:
        plate.state.vel *= -1
        # next time, do not call this function anymore, but the next one
        # (stopUnloading) instead
        fCheck.command = 'stopUnloading()'

def stopUnloading():
    if abs(O.forces.f(plate.id)[2]) == 0:
        # O.tags can be used to retrieve unique identifiers of the simulation
        # if running in batch, subsequent simulation would overwrite each other's output files otherwise
        # d (or description) is simulation description (composed of parameter values)
        # while the id is composed of time and process number
        # plot.saveDataTxt(O.tags['d.id'] + '.txt')
        plot.saveDataTxt('data'+ O.tags['id'] +'.txt')
        #print(timing.stats())
        O.pause()
        #Want Erase wall and plate
        #Take snap of my simualation
        Diameter_cut=[0.2,0.5,1,1.5,2,2.5,3,3.5,4,4.5,5]
        height_tab=utils.aabbExtrema()[1][2]-utils.aabbExtrema()[0][2]/(2*len(Diameter_cut))
        D=Diameter
        for i in range (0,len(Diameter_cut)):
            Cut_xy=Diameter_cut[i]
            Start_point=utils.aabbExtrema()[0]+(Cut_xy*D,Cut_xy*D,(i+1)*height_tab)
            End_point=utils.aabbExtrema()[1]-(Cut_xy*D,Cut_xy*D,(i+1)*height_tab)
            vol=(End_point[0]-Start_point[0])*(End_point[1]-Start_point[1])*(End_point[2]-Start_point[2])
            Porosity_rev= [voxelPorosity(resolution=1600,start=Start_point,end=End_point)]
            row_contents = [i,Start_point,End_point,vol,Porosity_rev]
            append_list_as_row('PH101_rev.csv', row_contents)

def addPlotData():
    if not isinstance(O.bodies[-1].shape, Wall):
        plot.addData()
        return
    Fz = O.forces.f(plate.id)[2]
    plot.addData(
        Fz=Fz,
        w=plate.state.pos[2] - (-4*Diameter),
        unbalanced=unbalancedForce(),
        i=O.iter
    )

def defVisualizer():
   with open("data.dat","a") as f:
       for b in O.bodies:
           if isinstance(b.shape, Sphere):
               rData = "{x},{y},{z},{r},{w}\t".format(x = b.state.pos[0],
                                                y = b.state.pos[1],
                                                z = b.state.pos[2],
                                                r = b.shape.radius + b.state.dR,
                                                w = plate.state.pos[2]
                                               )
               f.write(rData)
       f.write("\n")

O.timingEnabled=True
O.run(1, True)
plot.plots={'w':('Fz', None)}
plot.plot()

Question information

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Last reply:
Jan Stránský (honzik) said : #1

Hello,

you have 2 problems in one question. Next time, please create separate question for separate problem [1]

> How can I erase "walls" and the "plate" once my simulation is done (after o.pause).

Depends on what "walls" and "plate" are and how to indentify them w.r.t. other bodies. In general O.bodies.erase [2] is probably what you want. You can use it in different ways:
O.bodies.erase(id) # if you know the ID
O.bodies.erase(body.id) # if you have the body instance
for b in O.bodies:
   if isinstance(b.shape,Wall): O.bodies.erase(b.id) # erase all walls

> I also would like take a image of my simulation after o.pause.

Several options, too, depending on actual needs
- create screenshot manually
- use SnapshotEngine to create the screenshot
- export data and create image externally (e.g. using Paraview)

Cheers
Jan

[1] https://www.yade-dem.org/wiki/Howtoask
[2] https://yade-dem.org/doc/yade.wrapper.html#yade.wrapper.BodyContainer.erase

Hi Jan,

Thank you for reply, sorry for asking two questions. I thought both of them were on the same code.
When I add the o.bodies.erase, I am getting error message "Segmentation fault (core dumped)".

Snapshot engine works only during the iteration, and does not take image after o.pause.

Best,
Mithu

Jan Stránský (honzik) said : #3

> When I add the o.bodies.erase, I am getting error message "Segmentation fault (core dumped)".

please provide the code causing this.

> Snapshot engine works only during the iteration, and does not take image after o.pause.

not necessarily, something like
###
e = SnapshotEngine(...) # create a SnapshotEngine instance
e() # call the instance
###
could/should work

cheers
Jan

Hi Jan,

The snapshotengine does not work, getting erro message saying 'SnapshotEngine' is not defined.

Here is my code:
#!/usr/bin/env python
#encoding: ascii

# Modefied Oedometric Test for particle deformation under const. volume
# The reference paper [Haustein2017]

from __future__ import print_function
from yade import utils, plot, timing
from yade import pack

o = Omega()

# Physical parameters
fr = 0.3
rho = 2000
tc = 0.002
en = 0.7
et = 0.7
Diameter = 16.5e-3 # R

#*************************************

o.dt = 1.0e-5 # Timestep

#*************************************

# Add material
mat1 = O.materials.append(ViscElMat(frictionAngle=fr, tc=tc, en=en, et=et))

# Spheres for compression

sp=pack.SpherePack()
sp.makeCloud((-4.0*Diameter,-4.0*Diameter,-2.5*Diameter),(3.0*Diameter,3.0*Diameter,15.0*Diameter), rMean=Diameter/2.0, num=300)
sp.toSimulation()

######################################################################
cylinder=O.bodies.append(
    geom.facetBox((0,0,0), (4.0*Diameter,4.0*Diameter,4.0*Diameter), wallMask=63-32, material=mat1)
)

# Add engines
o.engines = [
  ForceResetter(),
  InsertionSortCollider([Bo1_Sphere_Aabb(aabbEnlargeFactor=1.05),
                         Bo1_Wall_Aabb(),
                         Bo1_Facet_Aabb()
                         ]),
  InteractionLoop(
    [Ig2_Sphere_Sphere_ScGeom(interactionDetectionFactor=1.05),
     Ig2_Facet_Sphere_ScGeom(),
     Ig2_Wall_Sphere_ScGeom()],
    [Ip2_ViscElMat_ViscElMat_ViscElPhys()],
    [Law2_ScGeom_ViscElPhys_Basic()]
  ),
  NewtonIntegrator(damping=0.1, gravity=[0, 0, -9.81]),
  #VTKRecorder(fileName='vtk-',recorders=['all'],iterPeriod=20000),
  PyRunner(command='checkForce()', realPeriod=1, label="fCheck"),
  DeformControl(label="DefControl")
]

def checkForce():
    # at the very start, unbalanced force can be low as there is only few
    # contacts, but it does not mean the packing is stable
    if O.iter < 20000:
        return
    # the rest will be run only if unbalanced is < 1.0 (stabilized packing)
    timing.reset()
    if unbalancedForce() > 0.2:
        return

    highSphere=0.0
    for b in O.bodies:
        if highSphere < b.state.pos[2] and isinstance(b.shape, Sphere):
            highSphere = b.state.pos[2]
        else:
            pass

    # add plate at upper box side
    O.bodies.append(wall(highSphere+0.5*Diameter, axis=2, sense=-1, material=mat1))
    # without this line, the plate variable would only exist inside this
    # function
    global plate
    plate = O.bodies[-1] # the last particles is the plate
    # Wall objects are "fixed" by default, i.e. not subject to forces
    # prescribing a velocity will therefore make it move at constant velocity
    # (downwards)
    plate.state.vel = (0, 0, -0.1)
    # start plotting the data now, it was not interesting before
    O.engines = O.engines + [PyRunner(command='addPlotData()', iterPeriod=1000)]
    # next time, do not call this function anymore, but the next one
    # (unloadPlate) instead
    fCheck.command = 'unloadPlate()'

def unloadPlate():
    # if the force on plate exceeds maximum load, start unloading
    # if abs(O.forces.f(plate.id)[2]) > 5e-2:
    # if plate.state.pos[2] < (-4*Diameter+40.0e-3):
    if abs(O.forces.f(plate.id)[2]) > 5e2:
        plate.state.vel *= -1
        # next time, do not call this function anymore, but the next one
        # (stopUnloading) instead
        fCheck.command = 'stopUnloading()'

def stopUnloading():
    if abs(O.forces.f(plate.id)[2]) == 0:
        # O.tags can be used to retrieve unique identifiers of the simulation
        # if running in batch, subsequent simulation would overwrite each other's output files otherwise
        # d (or description) is simulation description (composed of parameter values)
        # while the id is composed of time and process number
        # plot.saveDataTxt(O.tags['d.id'] + '.txt')
        plot.saveDataTxt('data'+ O.tags['id'] +'.txt')
        print(timing.stats())
        O.pause()
        for b in O.bodies:
            if isinstance(b.shape,Wall): O.bodies.erase(b.id) # erase all walls
        for j in cylinder: O.bodies.erase(j)

def addPlotData():
    if not isinstance(O.bodies[-1].shape, Wall):
        plot.addData()
        return
    Fz = O.forces.f(plate.id)[2]
    plot.addData(
        Fz=Fz,
        w=plate.state.pos[2] - (-4*Diameter), # hight of the box (Bottom to upper Wall)
        unbalanced=unbalancedForce(),
        i=O.iter
    )

O.timingEnabled=True
O.run(1, True)
plot.plots={'w':('Fz', None)}
plot.plot()

Jan Stránský (honzik) said : #5

SnapshotEngine should work, don't know why. also qt.SnapshotEngine cannot be found.. I think it is a topic for separate question :-)

concerning segmentation fault, it is probably somewhere, where the code expects a body, but it is deleted at the time.
Please run
catchsegv yade script.py
(where "yade" and "script.py" are the executable and the file you are using)
and provide the output

cheers
Jan

Note: if you want to just "not show" (instead of "delete") you can also use this:

In [2]: rr=yade.qt.Renderer()

In [3]: rr.hideBody?
Docstring:
hideBody( (OpenGLRenderer)arg1, (int)id) -> None :
    Hide body from id (see :yref:`OpenGLRenderer::showBody`)

Regards
Bruno

Hi Jan,

Here is my output from running with catchsegv:

Segmentation fault (core dumped)
*** Segmentation fault
Register dump:

 RAX: 0000000000000000 RBX: 00000000000016a1 RCX: 0000000000000007
 RDX: 00007feaa81371c0 RSI: 0000000000016a10 RDI: 000000000143add0
 RBP: 00007feaa87bac00 R8 : 0000000000000006 R9 : 00007feb66f400c0
 R10: 0000000000000000 R11: 0000000000000246 R12: 000000000143add0
 R13: 0000000000000030 R14: 0000000003928bd0 R15: 00007feb66f47200
 RSP: 00007feaafffea90

 RIP: 00007feb6444a173 EFLAGS: 00010202

 CS: 0033 FS: 0000 GS: 0000

 Trap: 0000000e Error: 00000004 OldMask: 00000000 CR2: 00000038

 FPUCW: 0000037f FPUSW: 00000020 TAG: 00007feb
 RIP: 68b40b56 RDP: 00000000

 ST(0) ffff 8000000000000000 ST(1) 0000 0000000000000000
 ST(2) 0000 0000000000000000 ST(3) 0000 0000000000000000
 ST(4) ffff 8000000000000000 ST(5) 0000 0000000000000000
 ST(6) ffff 8000000000000000 ST(7) 8000 8000000000000000
 mxcsr: 1fa5
 XMM0: 0000000000000000000000009dda7f80 XMM1: 0000000000000000000000009dda7f80
 XMM2: 0000000000000000000000009dda7f80 XMM3: 0000000000000000000000009dda7f80
 XMM4: 0000000000000000000000009dda7f80 XMM5: 0000000000000000000000009dda7f80
 XMM6: 0000000000000000000000009dda7f80 XMM7: 0000000000000000000000009dda7f80
 XMM8: 0000000000000000000000009dda7f80 XMM9: 0000000000000000000000009dda7f80
 XMM10: 0000000000000000000000009dda7f80 XMM11: 0000000000000000000000009dda7f80
 XMM12: 0000000000000000000000009dda7f80 XMM13: 0000000000000000000000009dda7f80
 XMM14: 0000000000000000000000009dda7f80 XMM15: 0000000000000000000000009dda7f80

Backtrace:
/home/mithu/myYade/trunk/install/lib/x86_64-linux-gnu/yade-Unknown/libdem.so(_ZN4yade13DeformControl6actionEv+0x93)[0x7feb6444a173]
/home/mithu/myYade/trunk/install/lib/x86_64-linux-gnu/yade-Unknown/libyade.so(_ZN4yade5Scene18moveToNextTimeStepEv+0x8f1)[0x7feb66d28ce1]
/home/mithu/myYade/trunk/install/lib/x86_64-linux-gnu/yade-Unknown/libyade.so(_ZN4yade14SimulationFlow12singleActionEv+0x78)[0x7feb66d2c538]
/home/mithu/myYade/trunk/install/lib/x86_64-linux-gnu/yade-Unknown/libyade.so(_ZN4yade12ThreadWorker16callSingleActionEv+0x14)[0x7feb66d4bf24]
/home/mithu/myYade/trunk/install/lib/x86_64-linux-gnu/yade-Unknown/libyade.so(_ZN4yade12ThreadRunner4callEv+0x3f)[0x7feb66d4878f]
/home/mithu/myYade/trunk/install/lib/x86_64-linux-gnu/yade-Unknown/libyade.so(_ZN4yade12ThreadRunner3runEv+0x58)[0x7feb66d48b28]
/home/mithu/myYade/trunk/install/lib/x86_64-linux-gnu/yade-Unknown/libyade.so(_ZN5boost6detail11thread_dataINS_9function0IvEEE3runEv+0x38)[0x7feb66d4bd98]
/lib/x86_64-linux-gnu/libboost_thread.so.1.71.0(+0x1143b)[0x7feb6a61243b]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x9609)[0x7feb6b4e2609]
/lib/x86_64-linux-gnu/libc.so.6(clone+0x43)[0x7feb6b61e293]

Memory map:

00400000-00423000 r--p 00000000 08:05 2098035 /usr/bin/python3.8
00423000-006b7000 r-xp 00023000 08:05 2098035 /usr/bin/python3.8
006b7000-008f3000 r--p 002b7000 08:05 2098035 /usr/bin/python3.8
008f4000-008f5000 r--p 004f3000 08:05 2098035 /usr/bin/python3.8
008f5000-0093c000 rw-p 004f4000 08:05 2098035 /usr/bin/python3.8
0093c000-0095f000 rw-p 00000000 00:00 0
010b2000-06dd0000 rw-p 00000000 00:00 0 [heap]
7fea98000000-7fea98021000 rw-p 00000000 00:00 0
7fea98021000-7fea9c000000 ---p 00000000 00:00 0
7fea9c000000-7fea9c021000 rw-p 00000000 00:00 0
7fea9c021000-7feaa0000000 ---p 00000000 00:00 0
7feaa0000000-7feaa0021000 rw-p 00000000 00:00 0
7feaa0021000-7feaa4000000 ---p 00000000 00:00 0
7feaa4000000-7feaa4021000 rw-p 00000000 00:00 0
7feaa4021000-7feaa8000000 ---p 00000000 00:00 0
7feaa8000000-7feaa9c06000 rw-p 00000000 00:00 0
7feaa9c06000-7feaac000000 ---p 00000000 00:00 0
7feaacdfb000-7feaad7fb000 rwxp 00000000 00:00 0
7feaad7fb000-7feaad7fc000 ---p 00000000 00:00 0
7feaad7fc000-7feaadffc000 rw-p 00000000 00:00 0
7feaadffc000-7feaadffd000 ---p 00000000 00:00 0
7feaadffd000-7feaae7fd000 rw-p 00000000 00:00 0
7feaae7fd000-7feaae7fe000 ---p 00000000 00:00 0
7feaae7fe000-7feaaeffe000 rw-p 00000000 00:00 0
7feaaeffe000-7feaaefff000 ---p 00000000 00:00 0
7feaaefff000-7feaaf7ff000 rw-p 00000000 00:00 0
7feaaf7ff000-7feaaf800000 ---p 00000000 00:00 0
7feaaf800000-7feab0000000 rw-p 00000000 00:00 0
7feab0000000-7feab0021000 rw-p 00000000 00:00 0
7feab0021000-7feab4000000 ---p 00000000 00:00 0
7feab4000000-7feab51ea000 rw-p 00000000 00:00 0
7feab51ea000-7feab8000000 ---p 00000000 00:00 0
7feab8000000-7feab8021000 rw-p 00000000 00:00 0
7feab8021000-7feabc000000 ---p 00000000 00:00 0
7feabc000000-7feabc021000 rw-p 00000000 00:00 0
7feabc021000-7feac0000000 ---p 00000000 00:00 0
7feac00d6000-7feac021a000 rw-s 00000000 00:01 1605678 /SYSV00000000 (deleted)
7feac02ea000-7feac036a000 rw-p 00000000 00:00 0
7feac036a000-7feac04af000 rw-s 00000000 00:01 1284342 /memfd:xorg (deleted)
7feac04af000-7feac04ef000 rw-p 00000000 00:00 0
7feac04ef000-7feac05b1000 rw-s 00000000 00:01 1284341 /memfd:xorg (deleted)
7feac05b1000-7feac06f1000 rw-p 00000000 00:00 0
7feac06f1000-7feac26f1000 rw-p 00000000 00:00 0
7feac26f1000-7feac2731000 rw-p 00000000 00:00 0
7feac2731000-7feac2732000 ---p 00000000 00:00 0
7feac2732000-7feac3132000 rw-p 00000000 00:00 0
7feac3132000-7feac3186000 r-xp 00000000 08:05 16386011 /home/mithu/.local/lib/python3.8/site-packages/matplotlib/backends/_backend_agg.cpython-38-x86_64-linux-gnu.so
7feac3186000-7feac3385000 ---p 00054000 08:05 16386011 /home/mithu/.local/lib/python3.8/site-packages/matplotlib/backends/_backend_agg.cpython-38-x86_64-linux-gnu.so
7feac3385000-7feac3386000 rw-p 00053000 08:05 16386011 /home/mithu/.local/lib/python3.8/site-packages/matplotlib/backends/_backend_agg.cpython-38-x86_64-linux-gnu.so
7feac3386000-7feac35c7000 rw-p 00000000 00:00 0
7feac35c7000-7feac35fe000 r-xp 00000000 08:05 16385944 /home/mithu/.local/lib/python3.8/site-packages/matplotlib/_image.cpython-38-x86_64-linux-gnu.so
7feac35fe000-7feac37fd000 ---p 00037000 08:05 16385944 /home/mithu/.local/lib/python3.8/site-packages/matplotlib/_image.cpython-38-x86_64-linux-gnu.so
7feac37fd000-7feac37fe000 rw-p 00036000 08:05 16385944 /home/mithu/.local/lib/python3.8/site-packages/matplotlib/_image.cpython-38-x86_64-linux-gnu.so
7feac37fe000-7feac37ff000 rw-p 00000000 00:00 0
7feac37ff000-7feac3800000 ---p 00000000 00:00 0
7feac3800000-7feac4000000 rw-p 00000000 00:00 0
7feac4000000-7feac4021000 rw-p 00000000 00:00 0
7feac4021000-7feac8000000 ---p 00000000 00:00 0
7feac8000000-7feac8021000 rw-p 00000000 00:00 0
7feac8021000-7feacc000000 ---p 00000000 00:00 0
7feacc000000-7feacc021000 rw-p 00000000 00:00 0
7feacc021000-7fead0000000 ---p 00000000 00:00 0
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7feb42596000-7feb42597000 rw-p 00000000 00:00 0
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7feb4287e000-7feb42903000 r--p 00000000 08:05 2105067 /usr/lib/x86_64-linux-gnu/libgtk-3.so.0.2404.16
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7feb43029000-7feb4302f000 rw-p 00000000 00:00 0
7feb4302f000-7feb43040000 r--p 00000000 08:05 3807857 /usr/lib/x86_64-linux-gnu/qt5/plugins/platformthemes/libqgtk3.so
7feb43040000-7feb43080000 r-xp 00011000 08:05 3807857 /usr/lib/x86_64-linux-gnu/qt5/plugins/platformthemes/libqgtk3.so
7feb43080000-7feb4308f000 r--p 00051000 08:05 3807857 /usr/lib/x86_64-linux-gnu/qt5/plugins/platformthemes/libqgtk3.so
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7feb43090000-7feb43092000 r--p 00060000 08:05 3807857 /usr/lib/x86_64-linux-gnu/qt5/plugins/platformthemes/libqgtk3.so
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7feb43094000-7feb43096000 r--p 00000000 08:05 2104456 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7feb43096000-7feb43099000 r-xp 00002000 08:05 2104456 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7feb43099000-7feb4309a000 r--p 00005000 08:05 2104456 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7feb4309a000-7feb4309b000 r--p 00005000 08:05 2104456 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7feb4309b000-7feb4309c000 rw-p 00006000 08:05 2104456 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7feb4309c000-7feb4309f000 r--p 00000000 08:05 2104448 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7feb4309f000-7feb430a5000 r-xp 00003000 08:05 2104448 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7feb430a5000-7feb430a7000 r--p 00009000 08:05 2104448 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7feb430a7000-7feb430a8000 r--p 0000a000 08:05 2104448 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7feb430a8000-7feb430a9000 rw-p 0000b000 08:05 2104448 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7feb430a9000-7feb430aa000 ---p 00000000 00:00 0
7feb430aa000-7feb438aa000 rw-p 00000000 00:00 0
7feb438aa000-7feb438ae000 r--p 00000000 08:05 2104988 /usr/lib/x86_64-linux-gnu/libgpg-error.so.0.28.0
7feb438ae000-7feb438c1000 r-xp 00004000 08:05 2104988 /usr/lib/x86_64-linux-gnu/libgpg-error.so.0.28.0
7feb438c1000-7feb438cb000 r--p 00017000 08:05 2104988 /usr/lib/x86_64-linux-gnu/libgpg-error.so.0.28.0
7feb438cb000-7feb438cc000 r--p 00020000 08:05 2104988 /usr/lib/x86_64-linux-gnu/libgpg-error.so.0.28.0
7feb438cc000-7feb438cd000 rw-p 00021000 08:05 2104988 /usr/lib/x86_64-linux-gnu/libgpg-error.so.0.28.0
7feb438cd000-7feb438d9000 r--p 00000000 08:05 2104910 /usr/lib/x86_64-linux-gnu/libgcrypt.so.20.2.5
7feb438d9000-7feb439a7000 r-xp 0000c000 08:05 2104910 /usr/lib/x86_64-linux-gnu/libgcrypt.so.20.2.5
7feb439a7000-7feb439e4000 r--p 000da000 08:05 2104910 /usr/lib/x86_64-linux-gnu/libgcrypt.so.20.2.5
7feb439e4000-7feb439e6000 r--p 00116000 08:05 2104910 /usr/lib/x86_64-linux-gnu/libgcrypt.so.20.2.5
7feb439e6000-7feb439eb000 rw-p 00118000 08:05 2104910 /usr/lib/x86_64-linux-gnu/libgcrypt.so.20.2.5
7feb439eb000-7feb439f0000 r-xp 00000000 08:05 2105904 /usr/lib/x86_64-linux-gnu/libxcb-util.so.1.0.0
7feb439f0000-7feb43bef000 ---p 00005000 08:05 2105904 /usr/lib/x86_64-linux-gnu/libxcb-util.so.1.0.0
7feb43bef000-7feb43bf0000 r--p 00004000 08:05 2105904 /usr/lib/x86_64-linux-gnu/libxcb-util.so.1.0.0
7feb43bf0000-7feb43bf1000 rw-p 00005000 08:05 2105904 /usr/lib/x86_64-linux-gnu/libxcb-util.so.1.0.0
7feb43bf1000-7feb43bfa000 r-xp 00000000 08:05 2104474 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7feb43bfa000-7feb43df9000 ---p 00009000 08:05 2104474 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7feb43df9000-7feb43dfa000 r--p 00008000 08:05 2104474 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7feb43dfa000-7feb43dfb000 rw-p 00009000 08:05 2104474 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7feb43dfb000-7feb43dff000 r-xp 00000000 08:05 2105884 /usr/lib/x86_64-linux-gnu/libxcb-image.so.0.0.0
7feb43dff000-7feb43ffe000 ---p 00004000 08:05 2105884 /usr/lib/x86_64-linux-gnu/libxcb-image.so.0.0.0
7feb43ffe000-7feb43fff000 r--p 00003000 08:05 2105884 /usr/lib/x86_64-linux-gnu/libxcb-image.so.0.0.0
7feb43fff000-7feb44000000 rw-p 00004000 08:05 2105884 /usr/lib/x86_64-linux-gnu/libxcb-image.so.0.0.0
7feb44000000-7feb44021000 rw-p 00000000 00:00 0
7feb44021000-7feb48000000 ---p 00000000 00:00 0
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7feb48001000-7feb48002000 r--s 00000000 08:05 3546864 /var/cache/fontconfig/ec2719c8-dde7-4a45-9ef9-054708e8fbd0-le64.cache-7
7feb48002000-7feb48003000 r--p 00000000 08:05 2104464 /usr/lib/x86_64-linux-gnu/libXinerama.so.1.0.0
7feb48003000-7feb48004000 r-xp 00001000 08:05 2104464 /usr/lib/x86_64-linux-gnu/libXinerama.so.1.0.0
7feb48004000-7feb48005000 r--p 00002000 08:05 2104464 /usr/lib/x86_64-linux-gnu/libXinerama.so.1.0.0
7feb48005000-7feb48006000 r--p 00002000 08:05 2104464 /usr/lib/x86_64-linux-gnu/libXinerama.so.1.0.0
7feb48006000-7feb48007000 rw-p 00003000 08:05 2104464 /usr/lib/x86_64-linux-gnu/libXinerama.so.1.0.0
7feb48007000-7feb48009000 r--p 00000000 08:05 2105247 /usr/lib/x86_64-linux-gnu/liblz4.so.1.9.2
7feb48009000-7feb48023000 r-xp 00002000 08:05 2105247 /usr/lib/x86_64-linux-gnu/liblz4.so.1.9.2
7feb48023000-7feb48026000 r--p 0001c000 08:05 2105247 /usr/lib/x86_64-linux-gnu/liblz4.so.1.9.2
7feb48026000-7feb48027000 r--p 0001e000 08:05 2105247 /usr/lib/x86_64-linux-gnu/liblz4.so.1.9.2
7feb48027000-7feb48028000 rw-p 0001f000 08:05 2105247 /usr/lib/x86_64-linux-gnu/liblz4.so.1.9.2
7feb48028000-7feb48038000 r--p 00000000 08:05 2097253 /usr/lib/x86_64-linux-gnu/libsystemd.so.0.28.0
7feb48038000-7feb480ad000 r-xp 00010000 08:05 2097253 /usr/lib/x86_64-linux-gnu/libsystemd.so.0.28.0
7feb480ad000-7feb480d2000 r--p 00085000 08:05 2097253 /usr/lib/x86_64-linux-gnu/libsystemd.so.0.28.0
7feb480d2000-7feb480d5000 r--p 000a9000 08:05 2097253 /usr/lib/x86_64-linux-gnu/libsystemd.so.0.28.0
7feb480d5000-7feb480d6000 rw-p 000ac000 08:05 2097253 /usr/lib/x86_64-linux-gnu/libsystemd.so.0.28.0
7feb480d6000-7feb480d7000 rw-p 00000000 00:00 0
7feb480d7000-7feb480e2000 r--p 00000000 08:05 2104714 /usr/lib/x86_64-linux-gnu/libdbus-1.so.3.19.11
7feb480e2000-7feb48110000 r-xp 0000b000 08:05 2104714 /usr/lib/x86_64-linux-gnu/libdbus-1.so.3.19.11
7feb48110000-7feb48125000 r--p 00039000 08:05 2104714 /usr/lib/x86_64-linux-gnu/libdbus-1.so.3.19.11
7feb48125000-7feb48126000 ---p 0004e000 08:05 2104714 /usr/lib/x86_64-linux-gnu/libdbus-1.so.3.19.11
7feb48126000-7feb48127000 r--p 0004e000 08:05 2104714 /usr/lib/x86_64-linux-gnu/libdbus-1.so.3.19.11
7feb48127000-7feb48128000 rw-p 0004f000 08:05 2104714 /usr/lib/x86_64-linux-gnu/libdbus-1.so.3.19.11
7feb48128000-7feb4812c000 r--p 00000000 08:05 2105916 /usr/lib/x86_64-linux-gnu/libxkbcommon.so.0.0.0
7feb4812c000-7feb48148000 r-xp 00004000 08:05 2105916 /usr/lib/x86_64-linux-gnu/libxkbcommon.so.0.0.0
7feb48148000-7feb48167000 r--p 00020000 08:05 2105916 /usr/lib/x86_64-linux-gnu/libxkbcommon.so.0.0.0
7feb48167000-7feb48169000 r--p 0003e000 08:05 2105916 /usr/lib/x86_64-linux-gnu/libxkbcommon.so.0.0.0
7feb48169000-7feb4816a000 rw-p 00040000 08:05 2105916 /usr/lib/x86_64-linux-gnu/libxkbcommon.so.0.0.0
7feb4816a000-7feb4816d000 r--p 00000000 08:05 2105914 /usr/lib/x86_64-linux-gnu/libxkbcommon-x11.so.0.0.0
7feb4816d000-7feb48171000 r-xp 00003000 08:05 2105914 /usr/lib/x86_64-linux-gnu/libxkbcommon-x11.so.0.0.0
7feb48171000-7feb48173000 r--p 00007000 08:05 2105914 /usr/lib/x86_64-linux-gnu/libxkbcommon-x11.so.0.0.0
7feb48173000-7feb48174000 r--p 00008000 08:05 2105914 /usr/lib/x86_64-linux-gnu/libxkbcommon-x11.so.0.0.0
7feb48174000-7feb48175000 rw-p 00009000 08:05 2105914 /usr/lib/x86_64-linux-gnu/libxkbcommon-x11.so.0.0.0
7feb48175000-7feb4817f000 r--p 00000000 08:05 2105908 /usr/lib/x86_64-linux-gnu/libxcb-xkb.so.1.0.0
7feb4817f000-7feb4818c000 r-xp 0000a000 08:05 2105908 /usr/lib/x86_64-linux-gnu/libxcb-xkb.so.1.0.0
7feb4818c000-7feb48191000 r--p 00017000 08:05 2105908 /usr/lib/x86_64-linux-gnu/libxcb-xkb.so.1.0.0
7feb48191000-7feb48192000 r--p 0001b000 08:05 2105908 /usr/lib/x86_64-linux-gnu/libxcb-xkb.so.1.0.0
7feb48192000-7feb48193000 rw-p 0001c000 08:05 2105908 /usr/lib/x86_64-linux-gnu/libxcb-xkb.so.1.0.0
7feb48193000-7feb48194000 r--p 00000000 08:05 2099729 /usr/lib/x86_64-linux-gnu/libxcb-xinerama.so.0.0.0
7feb48194000-7feb48195000 r-xp 00001000 08:05 2099729 /usr/lib/x86_64-linux-gnu/libxcb-xinerama.so.0.0.0
7feb48195000-7feb48196000 r--p 00002000 08:05 2099729 /usr/lib/x86_64-linux-gnu/libxcb-xinerama.so.0.0.0
7feb48196000-7feb48197000 r--p 00002000 08:05 2099729 /usr/lib/x86_64-linux-gnu/libxcb-xinerama.so.0.0.0
7feb48197000-7feb48198000 rw-p 00003000 08:05 2099729 /usr/lib/x86_64-linux-gnu/libxcb-xinerama.so.0.0.0
7feb48198000-7feb4819b000 r--p 00000000 08:05 2105906 /usr/lib/x86_64-linux-gnu/libxcb-xfixes.so.0.0.0
7feb4819b000-7feb4819e000 r-xp 00003000 08:05 2105906 /usr/lib/x86_64-linux-gnu/libxcb-xfixes.so.0.0.0
7feb4819e000-7feb4819f000 r--p 00006000 08:05 2105906 /usr/lib/x86_64-linux-gnu/libxcb-xfixes.so.0.0.0
7feb4819f000-7feb481a0000 ---p 00007000 08:05 2105906 /usr/lib/x86_64-linux-gnu/libxcb-xfixes.so.0.0.0
7feb481a0000-7feb481a1000 r--p 00007000 08:05 2105906 /usr/lib/x86_64-linux-gnu/libxcb-xfixes.so.0.0.0
7feb481a1000-7feb481a2000 rw-p 00008000 08:05 2105906 /usr/lib/x86_64-linux-gnu/libxcb-xfixes.so.0.0.0
7feb481a2000-7feb481a5000 r--p 00000000 08:05 2105902 /usr/lib/x86_64-linux-gnu/libxcb-sync.so.1.0.0
7feb481a5000-7feb481a8000 r-xp 00003000 08:05 2105902 /usr/lib/x86_64-linux-gnu/libxcb-sync.so.1.0.0
7feb481a8000-7feb481a9000 r--p 00006000 08:05 2105902 /usr/lib/x86_64-linux-gnu/libxcb-sync.so.1.0.0
7feb481a9000-7feb481aa000 ---p 00007000 08:05 2105902 /usr/lib/x86_64-linux-gnu/libxcb-sync.so.1.0.0
7feb481aa000-7feb481ab000 r--p 00007000 08:05 2105902 /usr/lib/x86_64-linux-gnu/libxcb-sync.so.1.0.0
7feb481ab000-7feb481ac000 rw-p 00008000 08:05 2105902 /usr/lib/x86_64-linux-gnu/libxcb-sync.so.1.0.0
7feb481ac000-7feb481ad000 r--p 00000000 08:05 2105898 /usr/lib/x86_64-linux-gnu/libxcb-shape.so.0.0.0
7feb481ad000-7feb481ae000 r-xp 00001000 08:05 2105898 /usr/lib/x86_64-linux-gnu/libxcb-shape.so.0.0.0
7feb481ae000-7feb481af000 r--p 00002000 08:05 2105898 /usr/lib/x86_64-linux-gnu/libxcb-shape.so.0.0.0
7feb481af000-7feb481b0000 r--p 00002000 08:05 2105898 /usr/lib/x86_64-linux-gnu/libxcb-shape.so.0.0.0
7feb481b0000-7feb481b1000 rw-p 00003000 08:05 2105898 /usr/lib/x86_64-linux-gnu/libxcb-shape.so.0.0.0
7feb481b1000-7feb481b6000 r--p 00000000 08:05 2105894 /usr/lib/x86_64-linux-gnu/libxcb-render.so.0.0.0
7feb481b6000-7feb481bb000 r-xp 00005000 08:05 2105894 /usr/lib/x86_64-linux-gnu/libxcb-render.so.0.0.0
7feb481bb000-7feb481bd000 r--p 0000a000 08:05 2105894 /usr/lib/x86_64-linux-gnu/libxcb-render.so.0.0.0
7feb481bd000-7feb481be000 ---p 0000c000 08:05 2105894 /usr/lib/x86_64-linux-gnu/libxcb-render.so.0.0.0
7feb481be000-7feb481bf000 r--p 0000c000 08:05 2105894 /usr/lib/x86_64-linux-gnu/libxcb-render.so.0.0.0
7feb481bf000-7feb481c0000 rw-p 0000d000 08:05 2105894 /usr/lib/x86_64-linux-gnu/libxcb-render.so.0.0.0
7feb481c0000-7feb481c2000 r--p 00000000 08:05 2105892 /usr/lib/x86_64-linux-gnu/libxcb-render-util.so.0.0.0
7feb481c2000-7feb481c4000 r-xp 00002000 08:05 2105892 /usr/lib/x86_64-linux-gnu/libxcb-render-util.so.0.0.0
7feb481c4000-7feb481c5000 r--p 00004000 08:05 2105892 /usr/lib/x86_64-linux-gnu/libxcb-render-util.so.0.0.0
7feb481c5000-7feb481c6000 r--p 00004000 08:05 2105892 /usr/lib/x86_64-linux-gnu/libxcb-render-util.so.0.0.0
7feb481c6000-7feb481c7000 rw-p 00005000 08:05 2105892 /usr/lib/x86_64-linux-gnu/libxcb-render-util.so.0.0.0
7feb481c7000-7feb481ce000 r--p 00000000 08:05 2105890 /usr/lib/x86_64-linux-gnu/libxcb-randr.so.0.1.0
7feb481ce000-7feb481d4000 r-xp 00007000 08:05 2105890 /usr/lib/x86_64-linux-gnu/libxcb-randr.so.0.1.0
7feb481d4000-7feb481d7000 r--p 0000d000 08:05 2105890 /usr/lib/x86_64-linux-gnu/libxcb-randr.so.0.1.0
7feb481d7000-7feb481d8000 ---p 00010000 08:05 2105890 /usr/lib/x86_64-linux-gnu/libxcb-randr.so.0.1.0
7feb481d8000-7feb481d9000 r--p 00010000 08:05 2105890 /usr/lib/x86_64-linux-gnu/libxcb-randr.so.0.1.0
7feb481d9000-7feb481da000 rw-p 00011000 08:05 2105890 /usr/lib/x86_64-linux-gnu/libxcb-randr.so.0.1.0
7feb481da000-7feb481db000 r--p 00000000 08:05 2105886 /usr/lib/x86_64-linux-gnu/libxcb-keysyms.so.1.0.0
7feb481db000-7feb481dc000 r-xp 00001000 08:05 2105886 /usr/lib/x86_64-linux-gnu/libxcb-keysyms.so.1.0.0
7feb481dc000-7feb481dd000 r--p 00002000 08:05 2105886 /usr/lib/x86_64-linux-gnu/libxcb-keysyms.so.1.0.0
7feb481dd000-7feb481de000 r--p 00002000 08:05 2105886 /usr/lib/x86_64-linux-gnu/libxcb-keysyms.so.1.0.0
7feb481de000-7feb481df000 rw-p 00003000 08:05 2105886 /usr/lib/x86_64-linux-gnu/libxcb-keysyms.so.1.0.0
7feb481df000-7feb481f3000 r--p 00000000 08:05 2099698 /usr/lib/x86_64-linux-gnu/libQt5DBus.so.5.12.8
7feb481f3000-7feb48260000 r-xp 00014000 08:05 2099698 /usr/lib/x86_64-linux-gnu/libQt5DBus.so.5.12.8
7feb48260000-7feb48277000 r--p 00081000 08:05 2099698 /usr/lib/x86_64-linux-gnu/libQt5DBus.so.5.12.8
7feb48277000-7feb48279000 r--p 00097000 08:05 2099698 /usr/lib/x86_64-linux-gnu/libQt5DBus.so.5.12.8
7feb48279000-7feb4827a000 rw-p 00099000 08:05 2099698 /usr/lib/x86_64-linux-gnu/libQt5DBus.so.5.12.8
7feb4827a000-7feb4827b000 rw-p 00000000 00:00 0
7feb4827b000-7feb48282000 r--p 00000000 08:05 2104852 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.12.0
7feb48282000-7feb482a7000 r-xp 00007000 08:05 2104852 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.12.0
7feb482a7000-7feb482bf000 r--p 0002c000 08:05 2104852 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.12.0
7feb482bf000-7feb482c1000 r--p 00043000 08:05 2104852 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.12.0
7feb482c1000-7feb482c2000 rw-p 00045000 08:05 2104852 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.12.0
7feb482c2000-7feb482fb000 r--p 00000000 08:05 2100223 /usr/lib/x86_64-linux-gnu/libQt5XcbQpa.so.5.12.8
7feb482fb000-7feb483e8000 r-xp 00039000 08:05 2100223 /usr/lib/x86_64-linux-gnu/libQt5XcbQpa.so.5.12.8
7feb483e8000-7feb4844b000 r--p 00126000 08:05 2100223 /usr/lib/x86_64-linux-gnu/libQt5XcbQpa.so.5.12.8
7feb4844b000-7feb4844c000 ---p 00189000 08:05 2100223 /usr/lib/x86_64-linux-gnu/libQt5XcbQpa.so.5.12.8
7feb4844c000-7feb48451000 r--p 00189000 08:05 2100223 /usr/lib/x86_64-linux-gnu/libQt5XcbQpa.so.5.12.8
7feb48451000-7feb48455000 rw-p 0018e000 08:05 2100223 /usr/lib/x86_64-linux-gnu/libQt5XcbQpa.so.5.12.8
7feb48455000-7feb48457000 rw-p 00000000 00:00 0
7feb48457000-7feb48458000 r--s 00000000 08:05 3546819 /var/cache/fontconfig/5af4c7fa-0a7d-4d93-98a2-49797b2e66dc-le64.cache-7
7feb48458000-7feb4845a000 r--p 00000000 08:05 2100237 /usr/lib/x86_64-linux-gnu/qt5/plugins/imageformats/libqgif.so
7feb4845a000-7feb4845e000 r-xp 00002000 08:05 2100237 /usr/lib/x86_64-linux-gnu/qt5/plugins/imageformats/libqgif.so
7feb4845e000-7feb4845f000 r--p 00006000 08:05 2100237 /usr/lib/x86_64-linux-gnu/qt5/plugins/imageformats/libqgif.so
7feb4845f000-7feb48460000 r--p 00006000 08:05 2100237 /usr/lib/x86_64-linux-gnu/qt5/plugins/imageformats/libqgif.so
7feb48460000-7feb48461000 rw-p 00007000 08:05 2100237 /usr/lib/x86_64-linux-gnu/qt5/plugins/imageformats/libqgif.so
7feb48461000-7feb48463000 r--p 00000000 08:05 2105814 /usr/lib/x86_64-linux-gnu/libvorbisfile.so.3.3.7
7feb48463000-7feb48468000 r-xp 00002000 08:05 2105814 /usr/lib/x86_64-linux-gnu/libvorbisfile.so.3.3.7
7feb48468000-7feb48469000 r--p 00007000 08:05 2105814 /usr/lib/x86_64-linux-gnu/libvorbisfile.so.3.3.7
7feb48469000-7feb4846a000 ---p 00008000 08:05 2105814 /usr/lib/x86_64-linux-gnu/libvorbisfile.so.3.3.7
7feb4846a000-7feb4846b000 r--p 00008000 08:05 2105814 /usr/lib/x86_64-linux-gnu/libvorbisfile.so.3.3.7
7feb4846b000-7feb4846c000 rw-p 00009000 08:05 2105814 /usr/lib/x86_64-linux-gnu/libvorbisfile.so.3.3.7
7feb4846c000-7feb4846f000 r--p 00000000 08:05 2104629 /usr/lib/x86_64-linux-gnu/libcanberra.so.0.2.5
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7feb6b705000-7feb6b706000 rw-p 00003000 08:05 2111410 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.71.0
7feb6b706000-7feb6b708000 r--p 00000000 08:05 2104611 /usr/lib/x86_64-linux-gnu/libbz2.so.1.0.4
7feb6b708000-7feb6b715000 r-xp 00002000 08:05 2104611 /usr/lib/x86_64-linux-gnu/libbz2.so.1.0.4
7feb6b715000-7feb6b717000 r--p 0000f000 08:05 2104611 /usr/lib/x86_64-linux-gnu/libbz2.so.1.0.4
7feb6b717000-7feb6b718000 r--p 00010000 08:05 2104611 /usr/lib/x86_64-linux-gnu/libbz2.so.1.0.4
7feb6b718000-7feb6b719000 rw-p 00011000 08:05 2104611 /usr/lib/x86_64-linux-gnu/libbz2.so.1.0.4
7feb6b719000-7feb6b71b000 r--p 00000000 08:05 2624903 /usr/lib/python3.8/lib-dynload/_bz2.cpython-38-x86_64-linux-gnu.so
7feb6b71b000-7feb6b71d000 r-xp 00002000 08:05 2624903 /usr/lib/python3.8/lib-dynload/_bz2.cpython-38-x86_64-linux-gnu.so
7feb6b71d000-7feb6b71f000 r--p 00004000 08:05 2624903 /usr/lib/python3.8/lib-dynload/_bz2.cpython-38-x86_64-linux-gnu.so
7feb6b71f000-7feb6b720000 r--p 00005000 08:05 2624903 /usr/lib/python3.8/lib-dynload/_bz2.cpython-38-x86_64-linux-gnu.so
7feb6b720000-7feb6b721000 rw-p 00006000 08:05 2624903 /usr/lib/python3.8/lib-dynload/_bz2.cpython-38-x86_64-linux-gnu.so
7feb6b721000-7feb6b728000 r--s 00000000 08:05 2757215 /usr/lib/x86_64-linux-gnu/gconv/gconv-modules.cache
7feb6b728000-7feb6b729000 r--p 00000000 08:05 2102462 /usr/lib/x86_64-linux-gnu/libSegFault.so
7feb6b729000-7feb6b72c000 r-xp 00001000 08:05 2102462 /usr/lib/x86_64-linux-gnu/libSegFault.so
7feb6b72c000-7feb6b72d000 r--p 00004000 08:05 2102462 /usr/lib/x86_64-linux-gnu/libSegFault.so
7feb6b72d000-7feb6b72e000 r--p 00004000 08:05 2102462 /usr/lib/x86_64-linux-gnu/libSegFault.so
7feb6b72e000-7feb6b72f000 rw-p 00005000 08:05 2102462 /usr/lib/x86_64-linux-gnu/libSegFault.so
7feb6b72f000-7feb6b731000 rw-p 00000000 00:00 0
7feb6b731000-7feb6b732000 r--p 00000000 08:05 2102458 /usr/lib/x86_64-linux-gnu/ld-2.31.so
7feb6b732000-7feb6b755000 r-xp 00001000 08:05 2102458 /usr/lib/x86_64-linux-gnu/ld-2.31.so
7feb6b755000-7feb6b75d000 r--p 00024000 08:05 2102458 /usr/lib/x86_64-linux-gnu/ld-2.31.so
7feb6b75d000-7feb6b75e000 r--p 00000000 08:05 3933439 /usr/share/locale-langpack/en/LC_MESSAGES/gtk30.mo
7feb6b75e000-7feb6b75f000 r--p 0002c000 08:05 2102458 /usr/lib/x86_64-linux-gnu/ld-2.31.so
7feb6b75f000-7feb6b760000 rw-p 0002d000 08:05 2102458 /usr/lib/x86_64-linux-gnu/ld-2.31.so
7feb6b760000-7feb6b761000 rw-p 00000000 00:00 0
7ffc4ae70000-7ffc4ae91000 rw-p 00000000 00:00 0 [stack]
7ffc4af96000-7ffc4af9a000 r--p 00000000 00:00 0 [vvar]
7ffc4af9a000-7ffc4af9c000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 --xp 00000000 00:00 0 [vsyscall]

Jan Stránský (honzik) said : #8

> Backtrace:
> /home/mithu/myYade/trunk/install/lib/x86_64-linux-gnu/yade-Unknown/libdem.so(_ZN4yade13DeformControl6actionEv+0x93)[0x7feb6444a173]

This is the problem, inside DeformControl::action [3], specifically here [4] (and below following the same logic with b[i]->...).
b ... body container (like O.bodies in Python)
i ... some index
b[i] ... i-th body. But after O.bodies.erase b[i] it is possibly nullptr (None in Python). The null-ity is not checked (but it should be to work with O.bodies.erase)
b[i]-> ... some operation with the body. But if the body is erased, b[i] is nullptr and it ends with segmentation fault.

If you want it to be fixed, you can:
- fix it yourself
- report an issue on gitlab (referencing this question)

Similar questions (O.bodies.erase and then segmentation fault) arises from time to time, with always the same reason - some piece of Yade C++ code not considering the possibility of erased bodies, maybe the topic deserves a FAQ.

Cheers
Jan

[3] https://gitlab.com/yade-dev/trunk/-/blob/master/pkg/dem/ViscoelasticPM.cpp#L408
[4] https://gitlab.com/yade-dev/trunk/-/blob/master/pkg/dem/ViscoelasticPM.cpp#L415

Hi Jan,

Thank you, what do I need to do to fix it? And how can I report it to gitlab?

For my code I did not use ViscoeleasticPM, I used LudingPM.

Thanks,
Mithu

Just one thing, when I am running the command in the terminal is erase my walls. It only crashes when I add it in my script.

Jan Stránský (honzik) said : #11

> what do I need to do to fix it?
> And how can I report it to gitlab?

- fix in source code: add checking if b[i] is nullptr and if yes, implement different behavior
- gitlab issue (and wait until some developer fix it and publish the fix): [5] (or [6] -> Issues -> New issue)

> For my code I did not use ViscoeleasticPM, I used LudingPM.
> O.engines = [ ..., DeformControl(label="DefControl")]

As explained, the problem is in DeformControl.
Placement of that class source code in "ViscoelasticPM.*pp" is not important.

> when I am running the command in the terminal is erase my walls. It only crashes when I add it in my script.

More information is needed to solve this problem.
This behavior should be independent of terminal/script. Of course assuming you do the same thing in terminal and script.
Since in your provided script, the erase is "deep" inside PyRunner and checkers, I suspect that "running the command in the terminal" might simply do something different than "added it in the script".

Cheers
Jan

[5] https://gitlab.com/yade-dev/trunk/-/issues/new
[6] https://gitlab.com/yade-dev/trunk/

Is #6 not enough to avoid the issue? I understand what you want is to produce an image without the wall, isn't it?
Bruno

Can you help with this problem?

Provide an answer of your own, or ask Mithushan Soundaranathan for more information if necessary.

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