Hi everybody, I am using Ubuntu 18.04, and Yade 2019-08-08.git-775ae74 I coded a simple triaxial problem and want to make a video from its 3d view. But I get the following as the output and no video file. When I click on the "play" button, just and error shows up *************************** output: ehsan@ehsan:~/Desktop/mycodes/video$ /home/ehsan/yade/install/bin/yade-2019-08-08.git-775ae74 video.py Welcome to Yade 2019-08-08.git-775ae74 Using python version: 3.6.8 (default, Oct 7 2019, 12:59:55) [GCC 8.3.0] TCP python prompt on localhost:9000, auth cookie `aedusk' XMLRPC info provider on http://localhost:21000 Running script video.py SpherePack:242 long int SpherePack::makeCloud(Vector3r, Vector3r, Real, Real, int, bool, Real, const std::vector&, const std::vector&, bool, int, Matrix3r): Exceeded 1000 tries to insert non-overlapping sphere to packing. Only 662 spheres were added, although you requested 2000. Trying again with porosity 0.46. The size distribution is being scaled down SpherePack:242 long int SpherePack::makeCloud(Vector3r, Vector3r, Real, Real, int, bool, Real, const std::vector&, const std::vector&, bool, int, Matrix3r): Exceeded 1000 tries to insert non-overlapping sphere to packing. Only 746 spheres were added, although you requested 2000. Trying again with porosity 0.514. The size distribution is being scaled down SpherePack:242 long int SpherePack::makeCloud(Vector3r, Vector3r, Real, Real, int, bool, Real, const std::vector&, const std::vector&, bool, int, Matrix3r): Exceeded 1000 tries to insert non-overlapping sphere to packing. Only 915 spheres were added, although you requested 2000. Trying again with porosity 0.5626. The size distribution is being scaled down SpherePack:242 long int SpherePack::makeCloud(Vector3r, Vector3r, Real, Real, int, bool, Real, const std::vector&, const std::vector&, bool, int, Matrix3r): Exceeded 1000 tries to insert non-overlapping sphere to packing. Only 1086 spheres were added, although you requested 2000. Trying again with porosity 0.60634. The size distribution is being scaled down SpherePack:242 long int SpherePack::makeCloud(Vector3r, Vector3r, Real, Real, int, bool, Real, const std::vector&, const std::vector&, bool, int, Matrix3r): Exceeded 1000 tries to insert non-overlapping sphere to packing. Only 1305 spheres were added, although you requested 2000. Trying again with porosity 0.645706. The size distribution is being scaled down SpherePack:242 long int SpherePack::makeCloud(Vector3r, Vector3r, Real, Real, int, bool, Real, const std::vector&, const std::vector&, bool, int, Matrix3r): Exceeded 1000 tries to insert non-overlapping sphere to packing. Only 1581 spheres were added, although you requested 2000. Trying again with porosity 0.681135. The size distribution is being scaled down The constructor with a shareWidget is deprecated, use the regular contructor instead. /home/ehsan/yade/install/lib/x86_64-linux-gnu/yade-2019-08-08.git-775ae74/py/yade/plot.py:444: MatplotlibDeprecationWarning: The 'verts' kwarg was deprecated in Matplotlib 3.0 and will be removed in 3.2. Use 'marker' instead. scatter=pylab.scatter(scatterPt[0] if not math.isnan(scatterPt[0]) else 0,scatterPt[1] if not math.isnan(scatterPt[1]) else 0,s=scatterSize,color=line.get_color(),**scatterMarkerKw) ThreadRunner:30 void ThreadRunner::run(): Exception occured: InsertionSortCollider.verletDist>0, but unable to locate NewtonIntegrator within O.engines. yadeWrapper.cpp:655 void pyOmega::wait(): Simulation error encountered. Traceback (most recent call last): File "/home/ehsan/yade/install/bin/yade-2019-08-08.git-775ae74", line 336, in runScript execfile(script,globals()) File "/usr/lib/python3/dist-packages/past/builtins/misc.py", line 82, in execfile exec_(code, myglobals, mylocals) File "video.py", line 98, in O.run(5000,True) RuntimeError: std::exception [[ ^L clears screen, ^U kills line. F12 controller, F11 3D view (press "h" in 3D view for help), F10 both, F9 generator, F8 plot. ]] In [1]: ThreadRunner:30 void ThreadRunner::run(): Exception occured: InsertionSortCollider.verletDist>0, but unable to locate NewtonIntegrator within O.engines. ************************* My code is: import numpy as np import math from yade import pack, plot, qt, export, utils from datetime import datetime sp=pack.SpherePack() mn, mx=Vector3(0,0,0), Vector3(10,10,10) sp.makeCloud(minCorner=mn,maxCorner=mx,rRelFuzz=0.2,num=2000,porosity=0.4) O.materials.append(FrictMat(young=15e6,poisson=0.4,frictionAngle=radians(30),density=2600,label='spheres')) O.materials.append(FrictMat(young=15e6,poisson=0.4,frictionAngle=0,density=0,label='frictionless')) O.bodies.append([sphere(center,rad,material='spheres') for center, rad in sp]) walls=aabbWalls(thickness=1e-10,material='frictionless') wallIds=O.bodies.append(walls) triax=TriaxialCompressionEngine( wall_bottom_id=wallIds[2], wall_top_id=wallIds[3], wall_left_id=wallIds[0], wall_right_id=wallIds[1], wall_back_id=wallIds[4], wall_front_id=wallIds[5], internalCompaction=False, sigmaIsoCompaction=-50e3, sigmaLateralConfinement=-50e3, max_vel=10, strainRate=0.01, label="triax", ) O.engines=[ ForceResetter(), InsertionSortCollider([Bo1_Sphere_Aabb(),Bo1_Box_Aabb()]), InteractionLoop( [Ig2_Sphere_Sphere_ScGeom(),Ig2_Box_Sphere_ScGeom()], [Ip2_FrictMat_FrictMat_FrictPhys()], [Law2_ScGeom_FrictPhys_CundallStrack()] ), GlobalStiffnessTimeStepper(active=1,timeStepUpdateInterval=100,timestepSafetyCoefficient=0.8), triax, NewtonIntegrator(damping=0.4) ] O.engines=O.engines[0:5]+[PyRunner(iterPeriod=20,command='history()',label='recorder')]+O.engines[5:7] #O.engines=O.engines[0:5]+[PyRunner(command='checkUnbalanced()',realPeriod=2)]+O.engines[5:7] O.engines=O.engines[0:5]+[VTKRecorder(fileName='3d-vtk-',recorders=['all'],iterPeriod=1000)]+O.engines[5:7] O.engines=O.engines[0:5]+[qt.SnapshotEngine(fileBase='3d-',iterPeriod=200,label='snapshot')]+O.engines[5:7] O.engines=O.engines[0:5]+[PyRunner(command='finish()',iterPeriod=20000)]+O.engines[5:7] O.dt=.5*PWaveTimeStep() qt.View() def finish(): makeVideo(snapshot.snapshots,'3d.mpeg',fps=10,bps=10000) O.pause() #rr=yade.qt.Renderer() #rr.shape=False #rr.intrPhys=True def history(): plot.addData(unbalanced=unbalancedForce(),i=O.iter,**O.energy, e11=-triax.strain[0], e22=-triax.strain[1], e33=-triax.strain[2], s11=-triax.stress(0)[0], s22=-triax.stress(2)[1], s33=-triax.stress(4)[2], Etot=O.energy.total()) #O.trackEnergy=True def checkUnbalanced(): if unbalancedForce()<.05: O.pause() plot.saveDataTxt('bbb.txt.bz2') for i in O.interactions: id1,id2 = i.id1,i.id2 fn = i.phys.normalForce fs = i.phys.shearForce #plot.plots={'i':('unbalanced'),'i':('s11','s22','s33'),'i':('e11','e22','e33'),'i':(O.energy.keys,None,'Etot')} plot.plots={'i':('unbalanced'),'i ':('s11','s22','s33'),' i':('e11','e22','e33'),'e22':('s22')} plot.labels={'unbalanced':'$F_{UB}$' , 's11':'$\sigma_{11}$' , 's22':'$\sigma_{22}$' , 's33':'$\sigma_{33}$' , 'e11':'$\epsilon_{11}$' , 'e22':'$\epsilon_{22}$' , 'e33':'$\epsilon_{33}$'} #plot.saveGnuplot() Gl1_Sphere.stripes=True plot.plot() O.saveTmp() O.run(5000,True) plot.saveDataTxt('results') #print 'stress difference:', (triax.stress[2]-triax.stress[1]) #print 'mean stress:',(triax.stress[2]+triax.stress[1]+triax.stress[0])/3 #print 'porosity:', porosity() *********************************** Thank you very much for your help.

When	Who	Action	New State
2019-10-20	Robert Caulk	Answer	Answered
2019-10-20	ehsan benabbas	Reopen	Open
2019-10-20	Jan Stránský	Answer	Answered
2019-10-21	ehsan benabbas	Confirm	Solved

Yade

History of question #685280