install yade on HPC

Hi all,

Recently, I am asking the technician at my university to help me to install YADE on the cluster. it seems he cannot install the CGAL module. as follows are the errors that he met when he installs Yade.

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Here's the command I run:

cmake -DCMAKE_INSTALL_PREFIX=/packages/7x/yade/2018.02b -DENABLE_GUI=OFF -DENABLE_GTS=ON -DENABLE_VTK=OFF -DENABLE_PFVFLOW=OFF -DENABLE_TWOPHASEFLOW=OFF -DENABLE_CGAL=ON ..

Here's the output it provides back, omitting anything beyond CGAL's error:

-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/lib64/ccache/cc
-- Check for working C compiler: /usr/lib64/ccache/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/lib64/ccache/c++
-- Check for working CXX compiler: /usr/lib64/ccache/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PythonInterp: /packages/7x/anaconda2/5.2.0/bin/python (found version "2.7.15")
-- Found OpenMP_C: -fopenmp (found version "3.1")
-- Found OpenMP_CXX: -fopenmp (found version "3.1")
-- Found OpenMP: TRUE (found version "3.1")
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found
-- Found Qt4: /usr/bin/qmake-qt4 (found version "4.8.5")
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1")
-- Version is set to 2018.02b
-- Found OpenGL: /usr/lib64/libGL.so
-- GTS using gts-config /packages/7x/gts/121130/bin/gts-config
-- Using GTS from /packages/7x/gts/121130
-- Found GL2PS: /usr/lib64/libgl2ps.so
-- CGAL not found.

Now, I have tried far more sophisticated approaches, by including these paths:

-DCGAL_INCLUDE_DIR
-DCGAL_LIBRARIES

Such as this attempt:

cmake -DCMAKE_INSTALL_PREFIX=/packages/7x/yade/2018.02b -DENABLE_GUI=OFF -DENABLE_GTS=ON -DENABLE_VTK=ON -DENABLE_PFVFLOW=OFF -DENABLE_TWOPHASEFLOW=OFF -DENABLE_CGAL=ON -DCGAL_DIR=/packages/7x/cgal/4.13.1 -DCGAL_INCLUDE_DIR=/packages/7x/cgal/4.13.1/include -DCGAL_LIBRARIES=/packages/7x/cgal/4.13.1/lib64 ..

-- Found CGAL

^ It "finds" cgal.... but errors out with:

[ 29%] Building CXX object CMakeFiles/yade.dir/pkg/common/common.cpp.o
In file included from /scratch/wdizon/builds/yade/241/src/lib/triangulation/Tesselation.h:9:0,
                 from /scratch/wdizon/builds/yade/241/src/pkg/dem/TesselationWrapper.hpp:15,
                 from /scratch/wdizon/builds/yade/241/src/pkg/common/PersistentTriangulationCollider.hpp:12,
                 from /scratch/wdizon/builds/yade/241/src/pkg/common/PersistentTriangulationCollider.cpp:9:
/scratch/wdizon/builds/yade/241/src/lib/triangulation/RegularTriangulation.h:11:64: fatal error: CGAL/Exact_predicates_inexact_constructions_kernel.h: No such file or directory
 #include <CGAL/Exact_predicates_inexact_constructions_kernel.h>
                                                                ^
compilation terminated.
make[2]: *** [CMakeFiles/yade.dir/pkg/common/PersistentTriangulationCollider.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from /scratch/wdizon/builds/yade/241/src/pkg/common/ZECollider.cpp:5:0:
/scratch/wdizon/builds/yade/241/src/pkg/common/ZECollider.hpp:19:37: fatal error: CGAL/box_intersection_d.h: No such file or directory
 #include <CGAL/box_intersection_d.h>
                                     ^
compilation terminated.

Does the file listed in the error above exist? Yes.

$ ls -la /packages/7x/cgal/4.13.1/include/CGAL/box_intersection_d.h
-rw-r--r-- 1 root root 16520 Mar 29 2019 /packages/7x/cgal/4.13.1/include/CGAL/box_intersection_d.h

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is there anyone who can give us some suggestions.

best,
yong