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0e1f616
(Get the code!)
So some detailed informations: we use -isolateDevice on the nvidia card, and set AutoAddGPU to false. This is working everywhere else, and has been working on Ubuntu up to 1.13.3-0ubuntu3.
Adding BusID is making things work, but normally, our setup is doing already more than that, and BusID shouldn't be needed when isolateDevice and AutoAddGPUs are set...