bifrost binary package in Ubuntu Noble ppc64el
Bifrost is a command-line tool for sequencing that features a broad
range of functions, such as indexing, editing, and querying the graph,
and includes a graph coloring method that maps each k-mer of the graph
to the genomes it occurs in.
.
* Build, index, color and query the compacted de Bruijn graph
* No need to build the uncompacted de Bruijn graph
* Reads or assembled genomes as input
* Output graph in GFA (can be visualized with Bandage), FASTA or binary
* Graph cleaning: short tip clipping, etc.
* Multi-threaded
* No parameters to estimate with other tools
* Exact or approximate k-mer search of queries
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2024-01-05 19:29:32 UTC | Published | Ubuntu Noble ppc64el | release | universe | python | Optional | 1.3.1-1 | ||
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Deleted | Ubuntu Noble ppc64el | proposed | universe | python | Optional | 1.3.1-1 | |||
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2024-01-05 19:29:43 UTC | Superseded | Ubuntu Noble ppc64el | release | universe | python | Optional | 1.3.0-1 | ||
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2024-01-14 00:10:16 UTC | Deleted | Ubuntu Noble ppc64el | proposed | universe | python | Optional | 1.3.0-1 | ||
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