ggd-utils binary package in Ubuntu Mantic ppc64el
Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes
Publishing history
| Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
|---|---|---|---|---|---|---|---|---|---|
| 2024-01-19 09:29:05 UTC | Published | Ubuntu Mantic ppc64el | updates | universe | science | Optional | 1.0.0+ds-1ubuntu0.23.10.1 | ||
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| 2024-01-19 08:04:19 UTC | Published | Ubuntu Mantic ppc64el | security | universe | science | Optional | 1.0.0+ds-1ubuntu0.23.10.1 | ||
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| 2023-08-24 18:19:04 UTC | Published | Ubuntu Mantic ppc64el | release | universe | science | Optional | 1.0.0+ds-1build1 | ||
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| Deleted | Ubuntu Mantic ppc64el | proposed | universe | science | Optional | 1.0.0+ds-1build1 | |||
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| 2023-08-24 18:21:29 UTC | Superseded | Ubuntu Mantic ppc64el | release | universe | science | Optional | 1.0.0+ds-1 | ||
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