toppred 1.10-10 (riscv64 binary) in ubuntu lunar

 Toppred is a program to determine the topology of a transmembrane
 protein based on G. von Heijne algorithm.
 .
 Each sequence from seq data in fasta format is processed, and toppred
 generate the Hydrophobycity profile of the sequence, and the
 corresponding hydrophobycities values in the file sequence-ID.hydro.
 .
 Furthermore, the predicted topologies are represented as png images.
 Each topology is stored in file sequence-ID-number.png
 .
 The hydrophobicity profile is computed using a window formed by a core
 rectangular window of size n, flanked by 2 triangular windows of size q.
 NB rectangular and triangular mean that the ponderation values inside
 those windows are respectively constant and variable.
 .
 This program is a new implementation of the original toppred program,
 based on G. von Heijne algorithm

Details

Package version:
1.10-10
Source:
toppred 1.10-10 source package in Ubuntu
Status:
Published
Component:
universe
Priority:
Optional

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