Ubuntu

vcfanno binary package in Ubuntu Jammy amd64

  1. Jammy (22.04)
  2. amd64
  3. vcfanno

 Vcfanno allows you to quickly annotate your VCF with any number of INFO
 fields from any number of VCFs or BED files. It uses a simple conf file
 to allow the user to specify the source annotation files and fields and
 how they will be added to the info of the query VCF.
 .
   * For VCF, values are pulled by name from the INFO field with special
     cases of ID and FILTER to pull from those VCF columns.
   * For BED, values are pulled from (1-based) column number.
   * For BAM, depth (count), "mapq" and "seq" are currently supported.
 .
 Vcfanno is written in go and it supports custom user-scripts written in
 Lua. It can annotate more than 8000 variants per second with 34
 annotations from 9 files on a modest laptop and over 30K variants per
 second using 12 processes on a server.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2021-11-05 12:29:24 UTC Published Ubuntu Jammy amd64 release universe science Optional 0.3.3+ds-1
  • Published
  • Copied from ubuntu jammy-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Jammy amd64 proposed universe science Optional 0.3.3+ds-1
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2021-11-02 05:34:02 UTC Superseded Ubuntu Jammy amd64 proposed universe science Optional 0.3.2+ds-3
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of vcfanno 0.3.3+ds-1 in ubuntu jammy PROPOSED
  • Published
  2021-11-05 12:31:50 UTC Superseded Ubuntu Jammy amd64 release universe science Optional 0.3.2+ds-2
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of vcfanno 0.3.3+ds-1 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu hirsute-proposed amd64 in Primary Archive for Ubuntu

Source package