Comment 59 for bug 1961427

Revision history for this message
Frank Heimes (fheimes) wrote :

Regarding zlib focal-proposed migration:

For libbio-samtools-perl it's the same situation like on kinetic.
samtools-legacy requires the PR #1258, and libbio-samtools-perl a rebuild (to link against the new libbio-dev). See update-excuse bug LP#1983255.

On top vcftools misses the 'Remove compressBound assertions' (PR #1258) fix as well.
I created a separate update-execuse bug LP#1983867.

The mentioned issue with htslib/1.10.2-3 is because the patched htslib 1.10.2-3ubuntu0.1 (that again incl. PR #1258) is needed:
https://people.canonical.com/~ubuntu-archive/proposed-migration/focal/update_excuses.html#htslib

This htslib 1.10.2-3ubuntu0.1 will at least solve kallisto, libtabixpp and probably samtools as well.

The isues with the kernels linux-hwe-5.11, linux-hwe-5.13 and linux-hwe-5.15 are all time outs on arm64, resspectively amrhf builds. So it's worth to retrigger these.