RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-012 4.4.0-53-generic #74+buildd1-Ubuntu SMP Tue Dec 6 12:35:40 UTC 2016 aarch64 Buildd toolchain package versions: launchpad-buildd_141 python-lpbuildd_141 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.6. Syncing the system clock with the buildd NTP service... 17 Dec 23:18:30 ntpdate[1918]: adjust time server 10.211.37.1 offset 0.004894 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11746913', '/home/buildd/filecache-default/0309f704a9139dce864b78599cddd58acb3f260a'] Unpacking chroot for build PACKAGEBUILD-11746913 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11746913'] Mounting chroot for build PACKAGEBUILD-11746913 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11746913', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11746913 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11746913', 'arm64'] Updating debian chroot for build PACKAGEBUILD-11746913 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [253 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [102 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [102 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 Packages [1195 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [586 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe arm64 Packages [7764 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4639 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 Packages [100 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [54.6 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 Packages [302 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [146 kB] Fetched 15.3 MB in 6s (2510 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd bash binutils bsdutils ca-certificates cpp cpp-6 debianutils diffutils dmsetup findutils g++ g++-6 gcc gcc-6 gcc-6-base grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libassuan0 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcurl3-gnutls libdevmapper1.02.1 libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libitm1 libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 liblzma5 libmount1 libnettle6 libnpth0 libpng16-16 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libubsan0 libudev1 libustr-1.0-1 libuuid1 libwind0-heimdal linux-libc-dev mount multiarch-support openssl perl perl-base pinentry-curses pkg-create-dbgsym systemd systemd-sysv tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 99 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 48.2 MB of archives. After this operation, 41.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 base-files arm64 9.6ubuntu9 [57.0 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main arm64 debianutils arm64 4.8.1 [84.9 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main arm64 bash arm64 4.4-2ubuntu1 [542 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main arm64 bsdutils arm64 1:2.29-1ubuntu2 [52.2 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 diffutils arm64 1:3.5-1 [150 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main arm64 findutils arm64 4.6.0+git+20161106-1 [269 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main arm64 grep arm64 2.27-1 [138 kB] Get:8 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libc6-dev arm64 2.24-7ubuntu2 [1928 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libc-dev-bin arm64 2.24-7ubuntu2 [59.0 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 linux-libc-dev arm64 4.9.0-11.12 [837 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libitm1 arm64 6.2.1-7ubuntu1 [25.3 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 gcc-6-base arm64 6.2.1-7ubuntu1 [17.7 kB] Get:13 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgcc1 arm64 1:6.2.1-7ubuntu1 [30.1 kB] Get:14 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libcc1-0 arm64 6.2.1-7ubuntu1 [27.6 kB] Get:15 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 binutils arm64 2.27.51.20161212-1ubuntu1 [2542 kB] Get:16 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgomp1 arm64 6.2.1-7ubuntu1 [61.6 kB] Get:17 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libatomic1 arm64 6.2.1-7ubuntu1 [6664 B] Get:18 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libasan3 arm64 6.2.1-7ubuntu1 [275 kB] Get:19 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libubsan0 arm64 6.2.1-7ubuntu1 [97.5 kB] Get:20 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 g++-6 arm64 6.2.1-7ubuntu1 [5894 kB] Get:21 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libstdc++-6-dev arm64 6.2.1-7ubuntu1 [1407 kB] Get:22 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgcc-6-dev arm64 6.2.1-7ubuntu1 [559 kB] Get:23 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 gcc-6 arm64 6.2.1-7ubuntu1 [5753 kB] Get:24 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 cpp-6 arm64 6.2.1-7ubuntu1 [5159 kB] Get:25 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libstdc++6 arm64 6.2.1-7ubuntu1 [369 kB] Get:26 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 zlib1g arm64 1:1.2.8.dfsg-4ubuntu1 [45.7 kB] Get:27 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libc6 arm64 2.24-7ubuntu2 [2198 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main arm64 libuuid1 arm64 2.29-1ubuntu2 [13.9 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main arm64 libblkid1 arm64 2.29-1ubuntu2 [90.6 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main arm64 libfdisk1 arm64 2.29-1ubuntu2 [117 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main arm64 libselinux1 arm64 2.6-3 [55.8 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main arm64 util-linux arm64 2.29-1ubuntu2 [832 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main arm64 mount arm64 2.29-1ubuntu2 [122 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main arm64 perl-modules-5.24 all 5.24.1~rc4-1 [2663 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main arm64 libperl5.24 arm64 5.24.1~rc4-1 [3234 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main arm64 perl arm64 5.24.1~rc4-1 [219 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main arm64 perl-base arm64 5.24.1~rc4-1 [1180 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main arm64 tar arm64 1.29b-1.1 [197 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main arm64 base-passwd arm64 3.5.42 [47.1 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main arm64 init-system-helpers all 1.46 [37.3 kB] Get:41 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libc-bin arm64 2.24-7ubuntu2 [493 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main arm64 liblzma5 arm64 5.2.2-1.2 [81.2 kB] Get:43 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libapt-pkg5.0 arm64 1.4~beta2 [715 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main arm64 adduser all 3.113+nmu3ubuntu5 [161 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main arm64 ubuntu-keyring all 2016.10.27 [16.6 kB] Get:46 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 apt arm64 1.4~beta2 [1041 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main arm64 libapparmor1 arm64 2.10.95-4ubuntu5.2 [27.1 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main arm64 libgpg-error0 arm64 1.25-2 [30.0 kB] Get:49 http://ftpmaster.internal/ubuntu zesty/main arm64 libgcrypt20 arm64 1.7.5-2 [307 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main arm64 libmount1 arm64 2.29-1ubuntu2 [98.0 kB] Get:51 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libseccomp2 arm64 2.3.1-2.1ubuntu1 [32.4 kB] Get:52 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 systemd arm64 232-8 [2037 kB] Get:53 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libsystemd0 arm64 232-8 [170 kB] Get:54 http://ftpmaster.internal/ubuntu zesty/main arm64 init arm64 1.46 [5320 B] Get:55 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 systemd-sysv arm64 232-8 [14.1 kB] Get:56 http://ftpmaster.internal/ubuntu zesty/main arm64 libsepol1 arm64 2.6-2 [176 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main arm64 libustr-1.0-1 arm64 1.0.4-6 [50.8 kB] Get:58 http://ftpmaster.internal/ubuntu zesty/main arm64 libsemanage-common all 2.6-1 [6832 B] Get:59 http://ftpmaster.internal/ubuntu zesty/main arm64 libsemanage1 arm64 2.6-1 [67.1 kB] Get:60 http://ftpmaster.internal/ubuntu zesty/main arm64 libsmartcols1 arm64 2.29-1ubuntu2 [57.1 kB] Get:61 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libudev1 arm64 232-8 [47.9 kB] Get:62 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 multiarch-support arm64 2.24-7ubuntu2 [6816 B] Get:63 http://ftpmaster.internal/ubuntu zesty/main arm64 tzdata all 2016j-2 [204 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main arm64 libdevmapper1.02.1 arm64 2:1.02.136-1ubuntu1 [109 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main arm64 dmsetup arm64 2:1.02.136-1ubuntu1 [64.9 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main arm64 libroken18-heimdal arm64 1.7~git20160703+dfsg-1ubuntu1 [34.5 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main arm64 libasn1-8-heimdal arm64 1.7~git20160703+dfsg-1ubuntu1 [127 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main arm64 libassuan0 arm64 2.4.3-2 [28.3 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main arm64 libhogweed4 arm64 3.3-1 [128 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main arm64 libnettle6 arm64 3.3-1 [96.0 kB] Get:71 http://ftpmaster.internal/ubuntu zesty/main arm64 libgnutls30 arm64 3.5.6-4ubuntu2 [512 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main arm64 libheimbase1-heimdal arm64 1.7~git20160703+dfsg-1ubuntu1 [24.3 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main arm64 libhcrypto4-heimdal arm64 1.7~git20160703+dfsg-1ubuntu1 [74.9 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main arm64 libwind0-heimdal arm64 1.7~git20160703+dfsg-1ubuntu1 [47.1 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main arm64 libhx509-5-heimdal arm64 1.7~git20160703+dfsg-1ubuntu1 [86.4 kB] Get:76 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libsqlite3-0 arm64 3.15.2-1 [407 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main arm64 libkrb5-26-heimdal arm64 1.7~git20160703+dfsg-1ubuntu1 [163 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main arm64 libheimntlm0-heimdal arm64 1.7~git20160703+dfsg-1ubuntu1 [13.3 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main arm64 libgssapi3-heimdal arm64 1.7~git20160703+dfsg-1ubuntu1 [77.3 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main arm64 libksba8 arm64 1.3.5-2 [77.4 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main arm64 libsasl2-modules-db arm64 2.1.27~72-g88d82a3+dfsg-1 [13.6 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main arm64 libsasl2-2 arm64 2.1.27~72-g88d82a3+dfsg-1 [41.6 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main arm64 libldap-2.4-2 arm64 2.4.42+dfsg-2ubuntu5 [135 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main arm64 libnpth0 arm64 1.3-1 [7234 B] Get:85 http://ftpmaster.internal/ubuntu zesty/main arm64 libslang2 arm64 2.3.1-5ubuntu1 [368 kB] Get:86 http://ftpmaster.internal/ubuntu zesty/main arm64 libssl1.0.0 arm64 1.0.2g-1ubuntu10 [703 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main arm64 pinentry-curses arm64 1.0.0-1 [29.4 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main arm64 xz-utils arm64 5.2.2-1.2 [79.1 kB] Get:89 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgssapi-krb5-2 arm64 1.15-1 [97.6 kB] Get:90 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libkrb5-3 arm64 1.15-1 [233 kB] Get:91 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libkrb5support0 arm64 1.15-1 [28.8 kB] Get:92 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libk5crypto3 arm64 1.15-1 [76.3 kB] Get:93 http://ftpmaster.internal/ubuntu zesty/main arm64 libcurl3-gnutls arm64 7.51.0-1ubuntu1 [156 kB] Get:94 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 apt-transport-https arm64 1.4~beta2 [31.1 kB] Get:95 http://ftpmaster.internal/ubuntu zesty/main arm64 openssl arm64 1.0.2g-1ubuntu10 [471 kB] Get:96 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 ca-certificates all 20161130 [193 kB] Get:97 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libpng16-16 arm64 1.6.26-6 [159 kB] Get:98 http://ftpmaster.internal/ubuntu zesty/main arm64 cpp arm64 4:6.2.1-1ubuntu1 [27.4 kB] Get:99 http://ftpmaster.internal/ubuntu zesty/main arm64 gcc arm64 4:6.2.1-1ubuntu1 [5186 B] Get:100 http://ftpmaster.internal/ubuntu zesty/main arm64 g++ arm64 4:6.2.1-1ubuntu1 [1464 B] Get:101 http://ftpmaster.internal/ubuntu zesty/main arm64 pkg-create-dbgsym all 0.73 [8952 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 48.2 MB in 6s (7774 kB/s) (Reading database ... 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Setting up libasan3:arm64 (6.2.1-7ubuntu1) ... Setting up libssl1.0.0:arm64 (1.0.2g-1ubuntu10) ... Setting up libpng16-16:arm64 (1.6.26-6) ... Setting up tzdata (2016j-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Dec 17 23:19:36 UTC 2016. Universal Time is now: Sat Dec 17 23:19:36 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (232-8) ... Setting up libubsan0:arm64 (6.2.1-7ubuntu1) ... Setting up libsasl2-modules-db:arm64 (2.1.27~72-g88d82a3+dfsg-1) ... Setting up linux-libc-dev:arm64 (4.9.0-11.12) ... Setting up libsasl2-2:arm64 (2.1.27~72-g88d82a3+dfsg-1) ... Setting up libroken18-heimdal:arm64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libksba8:arm64 (1.3.5-2) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.136-1ubuntu1) ... Setting up libkrb5support0:arm64 (1.15-1) ... Setting up libhogweed4:arm64 (3.3-1) ... Setting up perl (5.24.1~rc4-1) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up pkg-create-dbgsym (0.73) ... Setting up xz-utils (5.2.2-1.2) ... Setting up libheimbase1-heimdal:arm64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up openssl (1.0.2g-1ubuntu10) ... Setting up libsqlite3-0:arm64 (3.15.2-1) ... Setting up dmsetup (2:1.02.136-1ubuntu1) ... Setting up binutils (2.27.51.20161212-1ubuntu1) ... Setting up cpp-6 (6.2.1-7ubuntu1) ... Setting up libc-dev-bin (2.24-7ubuntu2) ... Setting up ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 10 added, 10 removed; done. Setting up libc6-dev:arm64 (2.24-7ubuntu2) ... Setting up libslang2:arm64 (2.3.1-5ubuntu1) ... Setting up libassuan0:arm64 (2.4.3-2) ... Setting up libitm1:arm64 (6.2.1-7ubuntu1) ... Setting up cpp (4:6.2.1-1ubuntu1) ... Setting up libk5crypto3:arm64 (1.15-1) ... Setting up libgcc-6-dev:arm64 (6.2.1-7ubuntu1) ... Setting up libstdc++-6-dev:arm64 (6.2.1-7ubuntu1) ... Setting up libwind0-heimdal:arm64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up init (1.46) ... Setting up libasn1-8-heimdal:arm64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:arm64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libgnutls30:arm64 (3.5.6-4ubuntu2) ... Setting up libhx509-5-heimdal:arm64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up gcc-6 (6.2.1-7ubuntu1) ... Setting up g++-6 (6.2.1-7ubuntu1) ... Setting up pinentry-curses (1.0.0-1) ... Setting up libkrb5-3:arm64 (1.15-1) ... Setting up libkrb5-26-heimdal:arm64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libheimntlm0-heimdal:arm64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up gcc (4:6.2.1-1ubuntu1) ... Setting up libgssapi-krb5-2:arm64 (1.15-1) ... Setting up g++ (4:6.2.1-1ubuntu1) ... Setting up libgssapi3-heimdal:arm64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libldap-2.4-2:arm64 (2.4.42+dfsg-2ubuntu5) ... Setting up libcurl3-gnutls:arm64 (7.51.0-1ubuntu1) ... Setting up apt-transport-https (1.4~beta2) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Processing triggers for ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11746913', 'arm64', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=zesty-proposed', '--purge=never', '--nolog', 't-coffee_11.00.8cbe486-5.dsc'] Initiating build PACKAGEBUILD-11746913 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-53-generic #74+buildd1-Ubuntu SMP Tue Dec 6 12:35:40 UTC 2016 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-012.buildd +==============================================================================+ | t-coffee 11.00.8cbe486-5 (arm64) 17 Dec 2016 23:19 | +==============================================================================+ Package: t-coffee Version: 11.00.8cbe486-5 Source Version: 11.00.8cbe486-5 Distribution: zesty-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/t-coffee-WcaT05/t-coffee-11.00.8cbe486' with '<>' I: NOTICE: Log filtering will replace 'build/t-coffee-WcaT05' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11746913/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- t-coffee_11.00.8cbe486-5.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-HNuRVw/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-HNuRVw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HNuRVw/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-HNuRVw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HNuRVw/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-HNuRVw/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (104 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-HNuRVw/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: debhelper (>= 10) Filtered Build-Depends: debhelper (>= 10) dpkg-deb: building package 'sbuild-build-depends-t-coffee-dummy' in '/<>/resolver-PpviJz/apt_archive/sbuild-build-depends-t-coffee-dummy.deb'. Ign:1 copy:/<>/resolver-PpviJz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-PpviJz/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-PpviJz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-PpviJz/apt_archive ./ Sources [209 B] Get:5 copy:/<>/resolver-PpviJz/apt_archive ./ Packages [528 B] Fetched 2856 B in 0s (129 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install t-coffee build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-t-coffee-dummy 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 15.7 MB of archives. After this operation, 63.0 MB of additional disk space will be used. Get:1 copy:/<>/resolver-PpviJz/apt_archive ./ sbuild-build-depends-t-coffee-dummy 0.invalid.0 [772 B] Get:2 http://ftpmaster.internal/ubuntu zesty/main arm64 groff-base arm64 1.22.3-9 [1129 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main arm64 libbsd0 arm64 0.8.3-1 [36.7 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main arm64 bsdmainutils arm64 9.0.12ubuntu1 [170 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 libpipeline1 arm64 1.4.1-2 [21.9 kB] Get:6 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 man-db arm64 2.7.6.1-2 [871 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main arm64 libunistring0 arm64 0.9.3-5.2ubuntu1 [251 kB] Get:8 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libmagic-mgc arm64 1:5.29-2 [180 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libmagic1 arm64 1:5.29-2 [60.4 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 file arm64 1:5.29-2 [21.6 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main arm64 gettext-base arm64 0.19.8.1-1ubuntu2 [45.4 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main arm64 libglib2.0-0 arm64 2.51.0-2 [949 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main arm64 libicu57 arm64 57.1-5 [7523 kB] Get:14 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libxml2 arm64 2.9.4+dfsg1-2.1 [568 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main arm64 libsigsegv2 arm64 2.10-5 [13.3 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main arm64 m4 arm64 1.4.17-5 [184 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main arm64 autoconf all 2.69-10 [321 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main arm64 autotools-dev all 20161112.1 [39.5 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main arm64 automake all 1:1.15-5ubuntu1 [509 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main arm64 autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main arm64 libtool all 2.4.6-2 [194 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main arm64 dh-autoreconf all 12 [15.8 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main arm64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main arm64 libfile-stripnondeterminism-perl all 0.028-1 [12.5 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main arm64 dh-strip-nondeterminism all 0.028-1 [4820 B] Get:27 http://ftpmaster.internal/ubuntu zesty/main arm64 libcroco3 arm64 0.6.11-2 [66.0 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main arm64 gettext arm64 0.19.8.1-1ubuntu2 [1012 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main arm64 po-debconf all 1.0.20 [232 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main arm64 debhelper all 10.2.2ubuntu1 [742 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.7 MB in 0s (17.0 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14015 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_arm64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../01-libbsd0_0.8.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.8.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12ubuntu1_arm64.deb ... 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Preparing to unpack .../27-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_10.2.2ubuntu1_all.deb ... Unpacking debhelper (10.2.2ubuntu1) ... Selecting previously unselected package sbuild-build-depends-t-coffee-dummy. Preparing to unpack .../30-sbuild-build-depends-t-coffee-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-t-coffee-dummy (0.invalid.0) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:arm64 (2.10-5) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:arm64 (2.51.0-2) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up libpipeline1:arm64 (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:arm64 (57.1-5) ... Setting up libbsd0:arm64 (0.8.3-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-2.1) ... Setting up libmagic-mgc (1:5.29-2) ... Setting up libmagic1:arm64 (1:5.29-2) ... Setting up libcroco3:arm64 (0.6.11-2) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.29-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-5ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (12) ... Setting up dh-strip-nondeterminism (0.028-1) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up sbuild-build-depends-t-coffee-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-53-generic arm64 (aarch64) Toolchain package versions: binutils_2.27.51.20161212-1ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.2.1-7ubuntu1 gcc-6_6.2.1-7ubuntu1 libc6-dev_2.24-7ubuntu2 libstdc++-6-dev_6.2.1-7ubuntu1 libstdc++6_6.2.1-7ubuntu1 linux-libc-dev_4.9.0-11.12 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.20-1 apt_1.4~beta2 apt-transport-https_1.4~beta2 autoconf_2.69-10 automake_1:1.15-5ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20161112.1 base-files_9.6ubuntu9 base-passwd_3.5.42 bash_4.4-2ubuntu1 binutils_2.27.51.20161212-1ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20161130 coreutils_8.25-2ubuntu2 cpp_4:6.2.1-1ubuntu1 cpp-6_6.2.1-7ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8.1 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.136-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 g++_4:6.2.1-1ubuntu1 g++-6_6.2.1-7ubuntu1 gcc_4:6.2.1-1ubuntu1 gcc-6_6.2.1-7ubuntu1 gcc-6-base_6.2.1-7ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.27-1 groff-base_1.22.3-9 gzip_1.6-4ubuntu1 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.4~beta2 libarchive-zip-perl_1.59-1 libasan3_6.2.1-7ubuntu1 libasn1-8-heimdal_1.7~git20160703+dfsg-1ubuntu1 libassuan0_2.4.3-2 libatomic1_6.2.1-7ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.29-1ubuntu2 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-7ubuntu2 libc-dev-bin_2.24-7ubuntu2 libc6_2.24-7ubuntu2 libc6-dev_2.24-7ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.2.1-7ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.51.0-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.136-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libgcc-6-dev_6.2.1-7ubuntu1 libgcc1_1:6.2.1-7ubuntu1 libgcrypt20_1.7.5-2 libgdbm3_1.8.3-14 libglib2.0-0_2.51.0-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.6-4ubuntu2 libgomp1_6.2.1-7ubuntu1 libgpg-error0_1.25-2 libgssapi-krb5-2_1.15-1 libgssapi3-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimbase1-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhogweed4_3.3-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1ubuntu1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libitm1_6.2.1-7ubuntu1 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1ubuntu1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libpng16-16_1.6.26-6 libprocps6_2:3.3.12-1ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~72-g88d82a3+dfsg-1 libsasl2-modules-db_2.1.27~72-g88d82a3+dfsg-1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu2 libsqlite3-0_3.15.2-1 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu10 libstdc++-6-dev_6.2.1-7ubuntu1 libstdc++6_6.2.1-7ubuntu1 libsystemd0_232-8 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_6.2.1-7ubuntu1 libudev1_232-8 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu2 libwind0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_4.9.0-11.12 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu2 multiarch-support_2.24-7ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu10 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_1.0.0-1 pkg-create-dbgsym_0.73 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-t-coffee-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 systemd_232-8 systemd-sysv_232-8 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2016j-2 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu2 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Dec 17 17:46:19 2016 UTC gpgv: using RSA key gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./t-coffee_11.00.8cbe486-5.dsc dpkg-source: info: extracting t-coffee in t-coffee-11.00.8cbe486 dpkg-source: info: unpacking t-coffee_11.00.8cbe486.orig.tar.gz dpkg-source: info: unpacking t-coffee_11.00.8cbe486-5.debian.tar.xz dpkg-source: info: applying probconsrna.patch dpkg-source: info: applying ncbi-blast++_has_dropped_pl_extension.patch dpkg-source: info: applying use_debian_packaged_TMalign.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying set_proper_dir_permissions.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying stable-linking-inputs.patch dpkg-source: info: applying clustalw2.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package t-coffee dpkg-buildpackage: info: source version 11.00.8cbe486-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build t-coffee-11.00.8cbe486 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --sourcedirectory=t_coffee_source dh_testdir -O--sourcedirectory=t_coffee_source debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf t_coffee_source/*.o t_coffee_source/t_coffee bin/t_coffee example/t_coffee.log bin/t_coffee rm -rf t_coffee_source/TMalign find . -name "*.o" -delete find . -name "*.deps" -delete chmod 644 example/* make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=t_coffee_source dh_clean -O--sourcedirectory=t_coffee_source debian/rules build-arch dh build-arch --sourcedirectory=t_coffee_source dh_testdir -a -O--sourcedirectory=t_coffee_source dh_update_autotools_config -a -O--sourcedirectory=t_coffee_source dh_autoreconf -a -O--sourcedirectory=t_coffee_source dh_auto_configure -a -O--sourcedirectory=t_coffee_source debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- -i USER_BIN=../bin/ FCC="gfortran -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong" all make -j4 -i USER_BIN=../bin/ "FCC=gfortran -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong" all make[2]: Entering directory '/<>/t_coffee_source' CC dev_lib/dev1.c CC dp_lib/CUSTOM_evaluate_for_struc.c CC dp_lib/evaluate.c CC dp_lib/evaluate_dirichlet.c dev_lib/dev1.c: In function ‘void aln2hitMat(Alignment*, char*)’: dev_lib/dev1.c:89:43: warning: too many arguments for format [-Wformat-extra-args] fprintf (stdout, "Process positions\n", i); ^ dp_lib/evaluate_dirichlet.c: In function ‘Mixture* read_dirichlet(char*)’: dp_lib/evaluate_dirichlet.c:317:25: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%f\n", &f); ^ dp_lib/evaluate_dirichlet.c:319:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%f", &f); ^ dp_lib/evaluate_dirichlet.c:323:24: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%f", &f); ^ dp_lib/evaluate_dirichlet.c:326:19: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "\n"); ^ CC dp_lib/evaluate_for_domain.c CC dp_lib/evaluate_for_struc.c dp_lib/evaluate.c: In function ‘Alignment* fork_triplet_coffee_evaluate_output(Alignment*, Constraint_list*, int)’: dp_lib/evaluate.c:808:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%d ", &res); ^ dp_lib/evaluate.c:813:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%f %f", &sseq, &mseq); ^ dp_lib/evaluate.c:818:38: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%f %f", &sseq, &mseq); ^ dp_lib/evaluate.c: In function ‘float** initialise_aa_physico_chemical_property_table(int*)’: dp_lib/evaluate.c:5644:43: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%f %c %*s",&v1, &c1 ); ^ CC dp_lib/fsa_dp.c CC dp_lib/pavie_dp.c dp_lib/pavie_dp.c: In function ‘double** pavie_seq2pavie_aln(Sequence*, char*, char*)’: dp_lib/pavie_dp.c:127:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s\n",mat_list[nch++]); ^ dp_lib/pavie_dp.c: In function ‘char** output_pavie_mat_list(int***, double*, char**, int, char*, int, char**)’: dp_lib/pavie_dp.c:1079:24: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system (command); ^ dp_lib/pavie_dp.c:1081:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system (command); ^ dp_lib/pavie_dp.c: In function ‘Alignment* pavie_seq2pavie_msa(Sequence*, char*, char*)’: dp_lib/pavie_dp.c:1365:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s", mat); ^ CC dp_lib/showpair.c CC dp_lib/util_domain_dp.c CC dp_lib/util_domain_dp_drivers.c CC dp_lib/util_dp_cdna_fasta_nw.c CC dp_lib/util_dp_clean_maln.c CC dp_lib/util_dp_drivers.c CC dp_lib/util_dp_est.c dp_lib/util_dp_drivers.c: In function ‘Constraint_list* align_pdb_pair_2(char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:968:35: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* align_pdb_pair(char*, char*, char*, char*, Constraint_list*, Job_TC*)’: dp_lib/util_dp_drivers.c:996:35: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* hh_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1037:33: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c:1048:15: warning: ignoring return value of ‘char* tmpnam(char*)’, declared with attribute warn_unused_result [-Wunused-result] tmpnam(aln1); ^ dp_lib/util_dp_drivers.c:1049:15: warning: ignoring return value of ‘char* tmpnam(char*)’, declared with attribute warn_unused_result [-Wunused-result] tmpnam(aln2); ^ dp_lib/util_dp_drivers.c:1052:17: warning: ignoring return value of ‘char* tmpnam(char*)’, declared with attribute warn_unused_result [-Wunused-result] tmpnam(hhfile); ^ dp_lib/util_dp_drivers.c:1099:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf2, 10000, fp); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* profile_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1253:31: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* pdbid_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1388:33: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* pdb_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1445:33: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* thread_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1577:33: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* lsqman_pair(char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1652:33: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* sap_pair(char*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1744:35: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c:1792:35: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd (cdir, sizeof(char)*1000); ^ dp_lib/util_dp_drivers.c:1793:26: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir (get_cache_dir()); ^ dp_lib/util_dp_drivers.c:1813:15: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir (cdir); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* rnapdb_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1927:31: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ CC dp_lib/util_dp_fasta_nw.c CC dp_lib/util_dp_fasta_sw.c CC dp_lib/util_dp_generic_fasta_nw.c CC dp_lib/util_dp_gotoh_nw.c CC dp_lib/util_dp_gotoh_sw.c CC dp_lib/util_dp_mm_nw.c dp_lib/util_dp_gotoh_sw.c: In function ‘int gotoh_pair_wise_sw(Alignment*, int*, int**, Constraint_list*)’: dp_lib/util_dp_gotoh_sw.c:391:55: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread ( &k, sizeof (TRACE_TYPE), 1, long_trace); ^ CC dp_lib/util_dp_sim.c CC dp_lib/util_dp_ssec_pwaln.c CC dp_lib/util_dp_suboptimal_nw.c CC dp_lib/util_graph_maln.c CC fastal/diagonal.c fastal/diagonal.c: In function ‘int seq_pair2blast_diagonal2(char*, char*, Diagonal**, int*, int, int, int)’: fastal/diagonal.c:434:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blast_command); ^ fastal/diagonal.c:439:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/diagonal.c:440:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/diagonal.c:441:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ CC fastal/fastal.c CC fastal/fastal_opt_parsing.c CC fastal/iteration.c CC fastal/parttree.c fastal/fastal.c: In function ‘int seq_pair2blast_diagonal(char*, char*, int**, int*, int, int, int)’: fastal/fastal.c:1924:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blast_command); ^ fastal/fastal.c:1929:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c:1930:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c:1931:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c:1976:24: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blast_command); ^ fastal/fastal.c:1980:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c:1981:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c:1982:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c: In function ‘int seq_pair2blat_diagonal(char*, char*, int**, int*, int, int, int)’: fastal/fastal.c:2115:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blast_command); ^ fastal/fastal.c: In function ‘int seq_pair2blastz_diagonal(char*, char*, int**, int*, int, int, int)’: fastal/fastal.c:2262:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blast_command); ^ fastal/fastal.c: In function ‘void file_pos2profile(FILE*, long int, Fastal_profile*, int, Fastal_param*)’: fastal/fastal.c:3201:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line, LINE_LENGTH , seq_file); ^ fastal/fastal.c: In function ‘void profile_file2profile(Fastal_profile*, FILE*, long int, Fastal_param*)’: fastal/fastal.c:3323:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, profile_f); ^ fastal/fastal.c:3326:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, profile_f); ^ fastal/fastal.c:3329:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, profile_f); ^ fastal/iteration.c: In function ‘void split_set(FILE*, Fastal_profile*, Fastal_profile*, char*, int, int*, char*)’: fastal/iteration.c:185:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , alignment_file); ^ fastal/fastal.c:3331:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, profile_f); ^ fastal/fastal.c:3333:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, profile_f); ^ fastal/fastal.c:3352:39: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , profile_f); ^ fastal/fastal.c: In function ‘void edit_seq2aligned_seq(char*, FILE*, long int, FILE*)’: fastal/fastal.c:3502:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line, LINE_LENGTH , sequence_file); ^ fastal/iteration.c: In function ‘void iterate(Fastal_param*, void*, char*, char*, int)’: fastal/iteration.c:310:44: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , alignment_file); ^ fastal/fastal.c: In function ‘void edit2alignment(FILE*, long int*, FILE*, long int*, int, int, char*, int, FILE*, int, FILE*)’: fastal/fastal.c:3575:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/iteration.c:435:17: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command); ^ fastal/fastal.c:3577:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/iteration.c: In function ‘void write_iterated_aln(char*, char*, char*, char*, int*, int, char*, int*, int)’: fastal/iteration.c:501:48: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(alnline, ALNLINE_LENGTH , old_aln_file); ^ fastal/iteration.c:504:48: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(alnline, ALNLINE_LENGTH , old_aln_file); ^ fastal/iteration.c:535:49: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(alnline, ALNLINE_LENGTH, old_aln_file); ^ fastal/iteration.c: In function ‘void edit2seq_pattern(FILE*, char*, char*)’: fastal/iteration.c:563:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/iteration.c:565:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/iteration.c:567:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/iteration.c:569:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/fastal.c:3579:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/fastal.c:3581:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/fastal.c:3643:60: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(aligned_sequence, alignment_length+3, edit_seq_file); ^ fastal/parttree.c: In function ‘int** make_distance_matrix_sim(FILE*, long int*, int*, int, int**)’: fastal/parttree.c:695:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 500, aln_f); ^ fastal/parttree.c:701:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 500, aln_f); ^ fastal/parttree.c: In function ‘void get_table(short int*, FILE*, long int)’: fastal/parttree.c:848:36: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, tables_f); ^ fastal/parttree.c:859:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, tables_f); ^ fastal/parttree.c: In function ‘int euclidean_dist(FILE*, long int, long int, short int*, short int*, int)’: fastal/parttree.c:891:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ fastal/parttree.c:903:35: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ fastal/parttree.c:906:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ fastal/parttree.c:912:35: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ fastal/parttree.c: In function ‘int euclidean_dist_half(FILE*, long int, short int*, short int*, int)’: fastal/parttree.c:951:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ fastal/parttree.c:962:35: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ CC fastal/scoring.c fastal/scoring.c: In function ‘double calculate_sum_of_pairs_score_affine(char*, int**, double, double)’: fastal/scoring.c:76:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, alignment_file); ^ fastal/scoring.c:78:42: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, alignment_file); ^ fastal/scoring.c:82:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, alignment_file); ^ fastal/scoring.c: In function ‘void compute_ref_alignments(char*, char*, int, int)’: fastal/scoring.c:384:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, seq_file); ^ fastal/scoring.c:398:22: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(aln_command); ^ fastal/scoring.c: In function ‘void make_ref_alignment(char*, char*, char*, int)’: fastal/scoring.c:488:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, seq_f); ^ fastal/scoring.c:502:17: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command); ^ fastal/scoring.c: In function ‘double agreement_score(char*, char*)’: fastal/scoring.c:583:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, result); ^ fastal/scoring.c:584:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, result); ^ fastal/scoring.c:585:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, result); ^ CC fastal/tree.c CC io_lib/io_func.c io_lib/io_func.c: In function ‘int output_raw_score(Alignment*, Alignment*, char*)’: io_lib/io_func.c:1235:17: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null] if (!A)return NULL; ^~~~ io_lib/io_func.c: In function ‘int** read_matrice(char*)’: io_lib/io_func.c:511:27: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "\n"); ^ io_lib/io_func.c: In function ‘void get_rgb_values(int, Color*)’: io_lib/io_func.c:971:115: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s %f %f %f", html_code[classC], &ps_code[classC][0], &ps_code[classC][1],&ps_code[classC][2]); ^ CC io_lib/pb_util_read_seq_util.c io_lib/pb_util_read_seq_util.c: In function ‘void getstr(char*, char*)’: io_lib/pb_util_read_seq_util.c:269:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(outstr, 100, stdin); ^ io_lib/pb_util_read_seq_util.c: In function ‘double getreal(char*, double, double, double)’: io_lib/pb_util_read_seq_util.c:280:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ io_lib/pb_util_read_seq_util.c: In function ‘int getint(char*, int, int, int)’: io_lib/pb_util_read_seq_util.c:305:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ io_lib/pb_util_read_seq_util.c: In function ‘void do_system()’: io_lib/pb_util_read_seq_util.c:327:15: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^ CC io_lib/pb_util_read_sequence.c io_lib/pb_util_read_sequence.c: In function ‘void get_clustal_seq(char*, char*, int*, char*, int)’: io_lib/pb_util_read_sequence.c:144:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE+1,fin); /* read the title line...ignore it */ ^ io_lib/pb_util_read_sequence.c:149:50: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for(i=1;iA)=aln2bootstrap (D1->A, ATOI_ACTION (1)); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:10958:32: note: in expansion of macro ‘ATOI_ACTION’ (D1->A)=aln2sample (D1->A, ATOI_ACTION (1)); ^~~~~~~~~~~ util_lib/reformat.c:11157:36: warning: null argument where non-null required (argument 1) [-Wnonnull] if (ACTION(2))D=atof (ACTION(2)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11183:38: note: in expansion of macro ‘ATOI_ACTION’ else TS=treelist2sub_seq((D1->S),ATOI_ACTION(1)); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11282:38: note: in expansion of macro ‘ATOI_ACTION’ else TS=treelist2sub_seq((D1->S),ATOI_ACTION(2)); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11283:34: note: in expansion of macro ‘ATOI_ACTION’ treelist2lti (D1->S,TS, (int)ATOI_ACTION(1), stdout ); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11290:38: note: in expansion of macro ‘ATOI_ACTION’ else TS=treelist2sub_seq((D1->S),ATOI_ACTION(1)); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11297:35: note: in expansion of macro ‘ATOI_ACTION’ D1->S=treelist2sub_seq (D1->S,ATOI_ACTION(1)); ^~~~~~~~~~~ util_lib/reformat.c:11325:27: warning: null argument where non-null required (argument 1) [-Wnonnull] ng=atoi(ACTION (2))+1; ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11444:44: note: in expansion of macro ‘ATOI_ACTION’ D1->T= aln2km_tree(D1->A, (ACTION(1)), ATOI_ACTION(2)); ^~~~~~~~~~~ util_lib/reformat.c:11530:47: warning: null argument where non-null required (argument 1) [-Wnonnull] if (ACTION(na+1))max=atof(ACTION(na+1)); ^ util_lib/reformat.c:11531:47: warning: null argument where non-null required (argument 1) [-Wnonnull] if (ACTION(na+2))enb=atoi(ACTION(na+2)); ^ util_lib/reformat.c:11539:47: warning: null argument where non-null required (argument 1) [-Wnonnull] if (ACTION(na+1))max=atof(ACTION(na+1)); ^ util_lib/reformat.c:11540:47: warning: null argument where non-null required (argument 1) [-Wnonnull] if (ACTION(na+2))enb=atoi(ACTION(na+2)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11669:37: note: in expansion of macro ‘ATOI_ACTION’ D1->A=aln2conservation ( D1->A, ATOI_ACTION (1), ACTION (2)); ^~~~~~~~~~~ util_lib/reformat.c:12301:36: warning: null argument where non-null required (argument 1) [-Wnonnull] else if (strstr (ACTION(1), "h")) ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12308:10: note: in expansion of macro ‘ATOI_ACTION’ F->t=ATOI_ACTION(2); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12309:10: note: in expansion of macro ‘ATOI_ACTION’ F->f=ATOI_ACTION(3); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12310:11: note: in expansion of macro ‘ATOI_ACTION’ F->p1=ATOI_ACTION(4); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12311:11: note: in expansion of macro ‘ATOI_ACTION’ F->p2=ATOI_ACTION(5); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12312:11: note: in expansion of macro ‘ATOI_ACTION’ F->p3=ATOI_ACTION(6); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12313:11: note: in expansion of macro ‘ATOI_ACTION’ F->p3=ATOI_ACTION(7); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12336:34: note: in expansion of macro ‘ATOI_ACTION’ D1->A=unalign_aln (D1->A,SA, ATOI_ACTION(1)); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12476:10: note: in expansion of macro ‘ATOI_ACTION’ if (!ATOI_ACTION(1))myexit(fprintf_error (stderr,"-kmeans ")); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12477:19: note: in expansion of macro ‘ATOI_ACTION’ km_seq (D1->A,ATOI_ACTION (1),ACTION(2),ACTION(3)); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12481:27: note: in expansion of macro ‘ATOI_ACTION’ D1->A=gap_trim (D1->A,ATOI_ACTION(1)); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12488:34: note: in expansion of macro ‘ATOI_ACTION’ D1->A=trim_RNA(D1->A, D2->S, ATOI_ACTION(1)); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:13008:7: note: in expansion of macro ‘ATOI_ACTION’ t=ATOI_ACTION(1); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:13009:7: note: in expansion of macro ‘ATOI_ACTION’ f=ATOI_ACTION(2); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:13010:8: note: in expansion of macro ‘ATOI_ACTION’ p1=ATOI_ACTION(3); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:13011:8: note: in expansion of macro ‘ATOI_ACTION’ p2=ATOI_ACTION(4); ^~~~~~~~~~~ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:13012:8: note: in expansion of macro ‘ATOI_ACTION’ p3=ATOI_ACTION(5); ^~~~~~~~~~~ util_lib/reformat.c: In function ‘int is_pdb_name(char*)’: util_lib/reformat.c:1502:34: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%d", &result); ^ util_lib/reformat.c: In function ‘char* get_pdb_id(char*)’: util_lib/reformat.c:1540:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "\n%s\n", buf); ^ util_lib/reformat.c: In function ‘int format_is_msf(char*)’: util_lib/reformat.c:2092:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp , "%s", buf); ^ util_lib/reformat.c: In function ‘Weights* get_amps_sd_scores(char*)’: util_lib/reformat.c:3590:26: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s", buf2); ^ util_lib/reformat.c:3597:27: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s", buf2); ^ util_lib/reformat.c:3606:26: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s", buf2); ^ util_lib/reformat.c:3612:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s",W->seq_name[a]); ^ util_lib/reformat.c:3614:27: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s", buf2); ^ util_lib/reformat.c:3625:21: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "\n"); ^ util_lib/reformat.c: In function ‘Structure* read_rna_struc_number(Alignment*, char*)’: util_lib/reformat.c:3898:46: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%c\n%d\n",&x, &(ST)->tot_list); ^ util_lib/reformat.c:3901:105: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%d %d %d %c %c %f\n", &(ST)->list[a][0],&(ST)->list[a][1],&(ST)->list[a][2], &x, &y, &f); ^ util_lib/reformat.c: In function ‘Sequence* get_struc_gor(char*)’: util_lib/reformat.c:4098:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s %d", name, &len); ^ util_lib/reformat.c:4119:63: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s %d\n",S->name[S->nseq], &(S->len[S->nseq])); ^ util_lib/reformat.c:4124:66: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, " %*c %c %*f %*f %*f\n",&(S->seq[S->nseq][a])); ^ util_lib/reformat.c: In function ‘Sequence* get_sequence_dali(char*)’: util_lib/reformat.c:4161:26: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s",name); ^ util_lib/reformat.c: In function ‘Sequence* get_dialign_sequence(char*)’: util_lib/reformat.c:4236:27: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] {fscanf (fp, "%s",name); ^ util_lib/reformat.c: In function ‘Sequence* get_swissprot_sequence(char*, char*)’: util_lib/reformat.c:5281:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, LONG_STRING, fp); ^ util_lib/reformat.c:5300:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, LONG_STRING, fp); ^ util_lib/reformat.c: In function ‘int fscanf_seq_name(FILE*, char*)’: util_lib/reformat.c:5319:25: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s", name); ^ util_lib/reformat.c: In function ‘int get_amps_seq_name(char**, char*)’: util_lib/reformat.c:5672:40: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] {fscanf (fp, "%*d >%s", name[nseq++]); ^ util_lib/reformat.c: In function ‘Alignment* read_gotoh_aln(char*, Alignment*)’: util_lib/reformat.c:5721:39: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, VERY_LONG_STRING, fp); ^ util_lib/reformat.c:5743:39: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, VERY_LONG_STRING, fp); ^ util_lib/reformat.c: In function ‘float output_maln_pval(char*, Alignment*)’: util_lib/reformat.c:5941:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s",string); ^ util_lib/reformat.c: In function ‘Alignment* similarities_file2aln(char*)’: util_lib/reformat.c:6106:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s %d", name,&i); ^ util_lib/reformat.c: In function ‘int** read_blast_matrix(char*)’: util_lib/reformat.c:13557:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s ", buf); ^ util_lib/reformat.c:13570:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%d ", &value); ^ util_lib/reformat.c:13595:22: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "\n"); ^ util_lib/reformat.c: In function ‘int** read_blast_matrix_old(char*)’: util_lib/reformat.c:13620:41: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( sbuf, VERY_LONG_STRING, fp); ^ util_lib/reformat.c:13637:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s ", buf); ^ util_lib/reformat.c:13650:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%d ", &value); ^ util_lib/reformat.c:13677:22: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "\n"); ^ util_lib/reformat.c: In function ‘int** read_pavie_matrix(char*)’: util_lib/reformat.c:13788:41: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( sbuf, VERY_LONG_STRING, fp); ^ CC util_lib/reformat_struc.c util_lib/reformat_struc.c: In function ‘Ca_trace* simple_read_ca_trace(char*)’: util_lib/reformat_struc.c:326:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%*s" ); ^ util_lib/reformat_struc.c:328:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%*s" ); ^ util_lib/reformat_struc.c:334:69: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%*s %*s %c %*c %d %*f %*f %*f\n",&res,&res_num); ^ util_lib/reformat_struc.c:361:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%*s" ); ^ util_lib/reformat_struc.c:363:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%*s" ); ^ util_lib/reformat_struc.c:372:100: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%*s %s %s %*c %d %f %f %f\n",A->type, A->res,&A->res_num, &A->x, &A->y, &A->z); ^ CC util_lib/util.c util_lib/util.c: In function ‘FILE* hsort_file(FILE*, int, int, size_t, int, int, int (*)(const void*, const void*, int, int, size_t), void* (*)(void*, void*, size_t))’: util_lib/util.c:281:31: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( rra, size, len,fp); /*rra=ra[--l]*/ ^ util_lib/util.c:286:31: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( rra, size, len,fp); /*rra=ra[ir]*/ ^ util_lib/util.c:289:31: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( rrb, size, len,fp); /*rrb=ra[0]*/ ^ util_lib/util.c:306:36: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (ra_j, size, len, fp); ^ util_lib/util.c:311:34: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (ra_j_1, size, len, fp); ^ util_lib/util.c: In function ‘void* bsearch_file(const void*, int*, int, int, FILE*, int, int, size_t, int (*)(const void*, const void*, int, int, size_t))’: util_lib/util.c:420:43: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread ( key2, el_size, entry_len,fp); ^ util_lib/util.c: In function ‘FILE* get_number_list_in_file(FILE*, int*, int*, int*)’: util_lib/util.c:847:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%d",&list[n[0]++]); ^ util_lib/util.c: In function ‘int quantile(int, char**)’: util_lib/util.c:906:38: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s %s\n", s1, s2); ^ util_lib/util.c: In function ‘int** input_array_int(char*)’: util_lib/util.c:1262:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%d\n", &len); ^ util_lib/util.c:1266:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d ", &len2); ^ util_lib/util.c:1269:33: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d ", &array[a][b]); ^ util_lib/util.c:1270:24: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "\n"); ^ util_lib/util.c: In function ‘int perl_strstr(char*, char*)’: util_lib/util.c:1925:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%d", &r); ^ CC util_lib/util_aln_analyze.c util_lib/util.c: In function ‘char* count_strings_in_file(char*, char*)’: util_lib/util.c:5090:34: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s\n",list[n]); ^ util_lib/util.c: In function ‘int get_cl_param(int, char**, FILE**, const char*, int*, const char*, int, int, const char*, ...)’: util_lib/util.c:6571:22: warning: second parameter of ‘va_start’ not last named argument [-Wvarargs] va_start (ap, usage); ^ util_lib/util.c: In function ‘char** get_parameter(char*, int*, char*)’: util_lib/util.c:6838:36: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line, VERY_LONG_STRING,fp); ^ util_lib/util.c: In function ‘FILE* set_fp_id(FILE*, char*)’: util_lib/util.c:6858:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s", string); ^ util_lib/util.c: In function ‘int** get_file_block_pattern(char*, int*, int)’: util_lib/util.c:7214:28: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line, lline,fp); ^ util_lib/util.c:7244:28: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line, lline,fp); ^ util_lib/util.c: In function ‘int check_for_update(char*)’: util_lib/util.c:7331:43: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "Version_%f", &new_version); ^ CC util_lib/util_analyse_constraints_list.c CC util_lib/util_constraints_list.c util_lib/util_constraints_list.c: In function ‘Constraint_list* fork_read_n_constraint_list(char**, int, char*, char*, char*, char*, FILE*, Constraint_list*, char*, int)’: util_lib/util_constraints_list.c:2163:81: warning: too many arguments for format [-Wformat-extra-args] fprintf ( local_stderr, "\n\t--- Process Method/Library/Aln %s", fname[a], ns); ^ util_lib/util_constraints_list.c: In function ‘Constraint_list* read_constraint_list_file(Constraint_list*, char*)’: util_lib/util_constraints_list.c:2775:76: warning: too many arguments for format [-Wformat-extra-args] x=sscanf (buf, "%s %d %d %d %d %d",arg, &length, &r1,&r2,&we,&cons,&misc); ^ util_lib/util_constraints_list.c: In function ‘Job_TC* submit_lib_job(Job_TC*)’: util_lib/util_constraints_list.c:577:18: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir (tdir); ^ util_lib/util_constraints_list.c:580:18: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir (cdir); ^ util_lib/util_constraints_list.c: In function ‘char* method_file_tag2value(char*, char*)’: util_lib/util_constraints_list.c:1140:32: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line,LONG_STRING, fp); ^ util_lib/util_constraints_list.c: In function ‘TC_method* method_file2TC_method(char*)’: util_lib/util_constraints_list.c:1182:32: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line,LONG_STRING, fp); ^ util_lib/util_constraints_list.c: In function ‘int read_cpu_in_list(char*)’: util_lib/util_constraints_list.c:2525:42: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] if ( c=='C')fscanf( fp, "PU %d\n", &cpu); ^ util_lib/util_constraints_list.c: In function ‘int read_seq_in_list(char*, int*, char***, char***, Genomic_info**)’: util_lib/util_constraints_list.c:2833:32: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%d\n", &max_nseq); ^ util_lib/util_constraints_list.c:2838:34: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%*s %d %*s\n", &l); ^ util_lib/util_constraints_list.c:2870:55: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s %d %s\n", name, &seq_len, sequence); ^ util_lib/util_constraints_list.c:2895:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line , 200 , fp); ^ util_lib/util_constraints_list.c: In function ‘Constraint_list* nfork_relax_constraint_list_4gp(Constraint_list*)’: util_lib/util_constraints_list.c:3903:55: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%d ", &CL->residue_index[s][r][a+WE]); ^ CC util_lib/util_declare.c CC util_lib/util_domain_constraints_list.c CC util_lib/util_dps.c CC util_lib/util_job_handling.c CC util_lib/util_make_tree.c Linking... dp_lib/util_dp_drivers.o: In function `hh_pair(TC_method*, char*, Constraint_list*)': ./t_coffee_source/dp_lib/util_dp_drivers.c:1048: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[2]: Leaving directory '/<>/t_coffee_source' make[1]: Leaving directory '/<>' dh_auto_test -a -O--sourcedirectory=t_coffee_source fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=t_coffee_source dh_testroot -a -O--sourcedirectory=t_coffee_source dh_prep -a -O--sourcedirectory=t_coffee_source dh_auto_install -a -O--sourcedirectory=t_coffee_source dh_install -a -O--sourcedirectory=t_coffee_source dh_installdocs -a -O--sourcedirectory=t_coffee_source dh_installchangelogs -a -O--sourcedirectory=t_coffee_source debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples mkdir -p /<>/debian/t-coffee/usr/share/doc/t-coffee/examples; cp -aR example/* /<>/debian/t-coffee/usr/share/doc/t-coffee/examples/; make[1]: Leaving directory '/<>' dh_installman -a -O--sourcedirectory=t_coffee_source dh_perl -a -O--sourcedirectory=t_coffee_source dh_link -a -O--sourcedirectory=t_coffee_source dh_strip_nondeterminism -a -O--sourcedirectory=t_coffee_source debian/rules override_dh_compress make[1]: Entering directory '/<>' #Compressing most of the files in examples/ makes them unusable dh_compress -Xt-coffee-examples ( cd debian/t-coffee-examples/ && \ chmod 644 usr/share/doc/t-coffee-examples/changelog.Debian && \ gzip -9 -n usr/share/doc/t-coffee-examples/changelog.Debian ) || true /bin/sh: 1: cd: can't cd to debian/t-coffee-examples/ make[1]: Leaving directory '/<>' dh_fixperms -a -O--sourcedirectory=t_coffee_source dh_strip -a -O--sourcedirectory=t_coffee_source dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: t-coffee dh_strip debug symbol extraction: packages to act on: t-coffee dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a -O--sourcedirectory=t_coffee_source dh_shlibdeps -a -O--sourcedirectory=t_coffee_source dh_installdeb -a -O--sourcedirectory=t_coffee_source dh_gencontrol -a -O--sourcedirectory=t_coffee_source dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform arm64: t-coffee dh_gencontrol debug symbol wrapper: packages to act on: t-coffee dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package t-coffee (pkgdir debian/t-coffee, ddeb package dir debian/t-coffee-dbgsym) dh_gencontrol debug symbol wrapper: building t-coffee-dbgsym_11.00.8cbe486-5_arm64.ddeb dpkg-deb: building package 't-coffee-dbgsym' in '../t-coffee-dbgsym_11.00.8cbe486-5_arm64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile t-coffee-dbgsym_11.00.8cbe486-5_arm64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O--sourcedirectory=t_coffee_source dh_builddeb -a -O--sourcedirectory=t_coffee_source INFO: pkgstriptranslations version 131 pkgstriptranslations: processing t-coffee (in debian/t-coffee); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/t-coffee/DEBIAN/control, package t-coffee, directory debian/t-coffee pkgstripfiles: Truncating usr/share/doc/t-coffee/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package t-coffee ... pkgstripfiles: No PNG files. dpkg-deb: building package 't-coffee' in '../t-coffee_11.00.8cbe486-5_arm64.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../t-coffee_11.00.8cbe486-5_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build t-coffee-11.00.8cbe486 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161217-2321 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ t-coffee_11.00.8cbe486-5_arm64.changes: --------------------------------------- Format: 1.8 Date: Sat, 17 Dec 2016 18:43:04 +0100 Source: t-coffee Binary: t-coffee t-coffee-examples Architecture: arm64 Version: 11.00.8cbe486-5 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: t-coffee - Multiple Sequence Alignment t-coffee-examples - annotated examples for the use of T-Coffee Changes: t-coffee (11.00.8cbe486-5) unstable; urgency=medium . * When using bioperl-run test suite it is uncovered that t-coffee is wrongly seeking for a clustalw2 executable. A patch is applied to rather seek for clustalw. * debhelper 10 * d/watch: version=4 * install README.test and test script as user documentation Checksums-Sha1: c0cb31ef0705688db2750b6d746b5b524dd8b789 1579052 t-coffee-dbgsym_11.00.8cbe486-5_arm64.ddeb 9c6fc49969ba9e9cc6f299d3b6282d71fdf530a4 1793186 t-coffee_11.00.8cbe486-5_arm64.deb Checksums-Sha256: d48175ae41d4444bbf3220c2cd3fd4c5e6686c40b6043bc9c25e48c9fc6682b1 1579052 t-coffee-dbgsym_11.00.8cbe486-5_arm64.ddeb d80f2b7cfbd1243c98384ac0d0f413a2bca756fb4407a352bc6572cf4a2ef00e 1793186 t-coffee_11.00.8cbe486-5_arm64.deb Files: bb04320b8277f1682ef1f1a042f455f0 1579052 science extra t-coffee-dbgsym_11.00.8cbe486-5_arm64.ddeb 28f755887f49dd9d99fcdf5804563a66 1793186 science optional t-coffee_11.00.8cbe486-5_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ t-coffee_11.00.8cbe486-5_arm64.deb ---------------------------------- new debian package, version 2.0. size 1793186 bytes: control archive=6337 bytes. 1681 bytes, 30 lines control 16530 bytes, 196 lines md5sums Package: t-coffee Version: 11.00.8cbe486-5 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3555 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libstdc++6 (>= 4.1.1) Recommends: amap-align, clustalo, clustalw, dialign-tx, fsa, kalign, libsoap-lite-perl, libxml-simple-perl, mafft, muscle, mustang, ncbi-blast+, poa, prank, probcons, proda, tm-align Suggests: boxshade, seaview, t-coffee-examples Section: science Priority: optional Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html Description: Multiple Sequence Alignment T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures. . T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information . T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer. drwxr-xr-x root/root 0 2016-12-17 17:43 ./ drwxr-xr-x root/root 0 2016-12-17 17:43 ./usr/ drwxr-xr-x root/root 0 2016-12-17 17:43 ./usr/bin/ -rwxr-xr-x root/root 2470184 2016-12-17 17:43 ./usr/bin/t_coffee drwxr-xr-x root/root 0 2016-12-17 17:43 ./usr/share/ drwxr-xr-x root/root 0 2016-12-17 17:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-12-17 17:43 ./usr/share/doc/t-coffee/ -rw-r--r-- root/root 1744 2016-12-17 17:43 ./usr/share/doc/t-coffee/README.Debian -rw-r--r-- root/root 261 2016-12-17 17:43 ./usr/share/doc/t-coffee/README.test -rw-r--r-- root/root 1920 2016-12-17 17:43 ./usr/share/doc/t-coffee/changelog.Debian.gz -rw-r--r-- root/root 1432 2016-12-17 17:43 ./usr/share/doc/t-coffee/copyright drwxr-xr-x root/root 0 2016-12-17 17:43 ./usr/share/doc/t-coffee/examples/ -rw-r--r-- root/root 4306 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1D4V-1.pdb.gz -rw-r--r-- root/root 6980 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1D4V-2.pdb.gz -rw-r--r-- root/root 6897 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1D4V-3.pdb.gz -rw-r--r-- root/root 6197 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1EXT-1.pdb.gz -rw-r--r-- root/root 6843 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1EXT-2.pdb.gz -rw-r--r-- root/root 7091 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1EXT-3.pdb.gz -rw-r--r-- root/root 4649 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1EXT-4.pdb.gz -rw-r--r-- root/root 5371 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1JMA-1.pdb.gz -rw-r--r-- root/root 6619 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1JMA-2.pdb.gz -rw-r--r-- root/root 4986 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1OQE-1.pdb.gz -rw-r--r-- root/root 5031 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1SG1-1.pdb.gz -rw-r--r-- root/root 6468 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1SG1-2.pdb.gz -rw-r--r-- root/root 6340 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1SG1-3.pdb.gz -rw-r--r-- root/root 6858 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1SG1-4.pdb.gz -rw-r--r-- root/root 5599 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1XU1-2.pdb.gz -rw-r--r-- root/root 5790 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/1XU2-1.pdb.gz -rw-r--r-- root/root 5724 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/2HEY-1.pdb.gz -rw-r--r-- root/root 6767 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/2HEY-2.pdb.gz -rw-r--r-- root/root 5949 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/2HEY-4.pdb.gz -rw-r--r-- root/root 7489 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/2RPJ-1.pdb.gz -rw-r--r-- root/root 5913 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/2UWI-1.pdb.gz -rw-r--r-- root/root 7136 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/2UWI-2.pdb.gz -rw-r--r-- root/root 6816 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/2UWI-3.pdb.gz -rw-r--r-- root/root 496 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/2seqs.fas -rw-r--r-- root/root 1115 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/3d.aln -rw-r--r-- root/root 47 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/3d.dnd -rw-r--r-- root/root 557 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/3d.fasta -rw-r--r-- root/root 904 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/3d_sample2.fasta -rw-r--r-- root/root 916 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/3d_sample3.fasta -rw-r--r-- root/root 1126 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/3d_sample4.aln -rw-r--r-- root/root 1686 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/3d_sample5.aln -rw-r--r-- root/root 576 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/3d_sample5.template_list -rw-r--r-- root/root 3894 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/b30.aln.gz -rw-r--r-- root/root 991 2014-08-12 20:07 ./usr/share/doc/t-coffee/examples/block1.aln -rw-r--r-- root/root 1591 2014-08-12 20:07 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+------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 52496 Build-Time: 102 Distribution: zesty-proposed Host Architecture: arm64 Install-Time: 21 Job: t-coffee_11.00.8cbe486-5.dsc Machine Architecture: arm64 Package: t-coffee Package-Time: 125 Source-Version: 11.00.8cbe486-5 Space: 52496 Status: successful Version: 11.00.8cbe486-5 -------------------------------------------------------------------------------- Finished at 20161217-2321 Build needed 00:02:05, 52496k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11746913'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11746913/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11746913'] Unmounting chroot for build PACKAGEBUILD-11746913... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11746913'] Removing build PACKAGEBUILD-11746913