RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-39 3.13.0-86-generic #131-Ubuntu SMP Thu May 12 23:33:13 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.6 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.24. Syncing the system clock with the buildd NTP service... 20 May 17:22:27 ntpdate[1679]: adjust time server 10.211.37.1 offset -0.000309 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9779050', '/home/buildd/filecache-default/9af1b65e710cc0b334e8c9a330a1d817d2c021bb'] Unpacking chroot for build PACKAGEBUILD-9779050 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9779050'] Mounting chroot for build PACKAGEBUILD-9779050 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9779050', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-9779050 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9779050', 'i386'] Updating debian chroot for build PACKAGEBUILD-9779050 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main i386 Packages [1199 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [568 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe i386 Packages [7732 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4434 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main i386 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe i386 Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main i386 Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe i386 Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 Packages [106 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [44.4 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe i386 Packages [275 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [126 kB] Fetched 15.0 MB in 9s (1508 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpng16-16 The following packages will be upgraded: apt apt-transport-https bash binutils bsdutils bzip2 cpp-5 debconf dmsetup dpkg dpkg-dev g++-5 gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers initscripts libapt-pkg5.0 libasan2 libatomic1 libblkid1 libbz2-1.0 libcap2 libcap2-bin libcc1-0 libcilkrts5 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libitm1 libldap-2.4-2 libmount1 libmpx0 libperl5.22 libpng12-0 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev lsb-base make mount optipng perl perl-base perl-modules-5.22 policyrcd-script-zg2 sed systemd systemd-sysv sysv-rc sysvinit-utils tar tzdata ubuntu-keyring util-linux zlib1g 81 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 97.9 MB of archives. After this operation, 185 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main i386 bash i386 4.3-14ubuntu2 [591 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 bsdutils i386 1:2.28-5ubuntu1 [57.6 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main i386 dpkg i386 1.18.7ubuntu1 [2191 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main i386 grep i386 2.25-1 [157 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main i386 hostname i386 3.17ubuntu1 [11.9 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main i386 perl-modules-5.22 all 5.22.2-1 [2642 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main i386 libperl5.22 i386 5.22.2-1 [3014 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main i386 perl i386 5.22.2-1 [237 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main i386 perl-base i386 5.22.2-1 [1369 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main i386 bzip2 i386 1.0.6-8build1 [32.5 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main i386 libbz2-1.0 i386 1.0.6-8build1 [30.9 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main i386 zlib1g i386 1:1.2.8.dfsg-2ubuntu5 [52.1 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 init-system-helpers all 1.33ubuntu2 [31.9 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 init i386 1.33ubuntu2 [4344 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libsmartcols1 i386 2.28-5ubuntu1 [70.4 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libuuid1 i386 2.28-5ubuntu1 [16.2 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libblkid1 i386 2.28-5ubuntu1 [119 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libfdisk1 i386 2.28-5ubuntu1 [153 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 sysv-rc all 2.88dsf-59.4ubuntu1 [18.2 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 initscripts i386 2.88dsf-59.4ubuntu1 [23.9 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 util-linux i386 2.28-5ubuntu1 [904 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 sysvinit-utils i386 2.88dsf-59.4ubuntu1 [22.0 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main i386 debconf all 1.5.59ubuntu1 [136 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main i386 libgpg-error0 i386 1.22-2 [37.2 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main i386 libgcrypt20 i386 1.7.0-2 [372 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main i386 libsystemd0 i386 229-6ubuntu1 [228 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main i386 systemd i386 229-6ubuntu1 [3683 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libcap2 i386 1:2.25-1 [13.7 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main i386 libselinux1 i386 2.5-3 [70.1 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libmount1 i386 2.28-5ubuntu1 [126 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libcap2-bin i386 1:2.25-1 [20.6 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main i386 lsb-base all 9.20160110ubuntu1 [13.7 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 mount i386 2.28-5ubuntu1 [129 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main i386 sed i386 4.2.2-7.1 [139 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main i386 tar i386 1.29-1 [227 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 gcc-6-base i386 6.1.1-4ubuntu11 [17.0 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libgcc1 i386 1:6.1.1-4ubuntu11 [46.9 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libstdc++6 i386 6.1.1-4ubuntu11 [433 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main i386 libapt-pkg5.0 i386 1.3~exp1 [744 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main i386 ubuntu-keyring all 2016.05.13 [16.5 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main i386 apt i386 1.3~exp1 [1053 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main i386 systemd-sysv i386 229-6ubuntu1 [17.7 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main i386 libudev1 i386 229-6ubuntu1 [63.3 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libdevmapper1.02.1 i386 2:1.02.124-1ubuntu1 [154 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main i386 libsepol1 i386 2.5-1 [236 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main i386 libsemanage-common all 2.5-1 [6800 B] Get:47 http://ftpmaster.internal/ubuntu yakkety/main i386 libsemanage1 i386 2.5-1 [88.3 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main i386 libusb-0.1-4 i386 2:0.1.12-30 [17.7 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main i386 tzdata all 2016d-2 [168 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main i386 libtasn1-6 i386 4.8-1 [44.8 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libgnutls30 i386 3.4.11-4ubuntu1 [569 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main i386 libslang2 i386 2.3.0-2.3ubuntu1 [416 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main i386 apt-transport-https i386 1.3~exp1 [28.0 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main i386 libsasl2-modules-db i386 2.1.26.dfsg1-15 [15.4 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main i386 libsasl2-2 i386 2.1.26.dfsg1-15 [51.8 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main i386 libldap-2.4-2 i386 2.4.42+dfsg-2ubuntu4 [173 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main i386 libpng16-16 i386 1.6.21-5 [181 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-1 [58.1 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety/main i386 binutils i386 2.26-9ubuntu1 [2494 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libgomp1 i386 6.1.1-4ubuntu11 [79.9 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libitm1 i386 6.1.1-4ubuntu11 [31.2 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libatomic1 i386 6.1.1-4ubuntu11 [9902 B] Get:63 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libasan2 i386 5.3.1-20ubuntu1 [266 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libubsan0 i386 6.1.1-4ubuntu11 [120 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libcilkrts5 i386 6.1.1-4ubuntu11 [45.8 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libmpx0 i386 5.3.1-20ubuntu1 [11.1 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libquadmath0 i386 6.1.1-4ubuntu11 [204 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 g++-5 i386 5.3.1-20ubuntu1 [30.4 MB] Get:69 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libstdc++-5-dev i386 5.3.1-20ubuntu1 [1433 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 gcc-5 i386 5.3.1-20ubuntu1 [8469 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libgcc-5-dev i386 5.3.1-20ubuntu1 [2233 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libcc1-0 i386 6.1.1-4ubuntu11 [33.0 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 cpp-5 i386 5.3.1-20ubuntu1 [28.4 MB] Get:74 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 gcc-5-base i386 5.3.1-20ubuntu1 [16.9 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 dmsetup i386 2:1.02.124-1ubuntu1 [72.9 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main i386 dpkg-dev all 1.18.7ubuntu1 [666 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main i386 libdpkg-perl all 1.18.7ubuntu1 [202 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main i386 make i386 4.1-9 [154 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/universe i386 libpng12-0 i386 1.2.54-6ubuntu1 [122 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 linux-libc-dev i386 4.4.0-23.41 [840 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main i386 optipng i386 0.7.6-1build1 [86.3 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main i386 policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 97.9 MB in 10s (9777 kB/s) (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12164 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.0-2_i386.deb ... Unpacking libgcrypt20:i386 (1.7.0-2) over (1.6.5-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgcrypt20:i386 (1.7.0-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... 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Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.124-1ubuntu1_i386.deb ... Unpacking libdevmapper1.02.1:i386 (2:1.02.124-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libdevmapper1.02.1:i386 (2:1.02.124-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libsepol1_2.5-1_i386.deb ... Unpacking libsepol1:i386 (2.5-1) over (2.4-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsepol1:i386 (2.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.5-1_all.deb ... Unpacking libsemanage-common (2.5-1) over (2.3-1build3) ... Setting up libsemanage-common (2.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.5-1_i386.deb ... Unpacking libsemanage1:i386 (2.5-1) over (2.3-1build3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsemanage1:i386 (2.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-30_i386.deb ... Unpacking libusb-0.1-4:i386 (2:0.1.12-30) over (2:0.1.12-28) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libusb-0.1-4:i386 (2:0.1.12-30) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... 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Universal Time is now: Fri May 20 17:25:07 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libtasn1-6:i386 (4.8-1) ... Setting up libgnutls30:i386 (3.4.11-4ubuntu1) ... Setting up libslang2:i386 (2.3.0-2.3ubuntu1) ... Setting up apt-transport-https (1.3~exp1) ... Setting up libsasl2-modules-db:i386 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:i386 (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:i386 (2.4.42+dfsg-2ubuntu4) ... Setting up libpng16-16:i386 (1.6.21-5) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-1) ... Setting up binutils (2.26-9ubuntu1) ... Setting up libgomp1:i386 (6.1.1-4ubuntu11) ... Setting up libitm1:i386 (6.1.1-4ubuntu11) ... Setting up libatomic1:i386 (6.1.1-4ubuntu11) ... Setting up gcc-5-base:i386 (5.3.1-20ubuntu1) ... Setting up libasan2:i386 (5.3.1-20ubuntu1) ... Setting up libubsan0:i386 (6.1.1-4ubuntu11) ... Setting up libcilkrts5:i386 (6.1.1-4ubuntu11) ... Setting up libmpx0:i386 (5.3.1-20ubuntu1) ... Setting up libquadmath0:i386 (6.1.1-4ubuntu11) ... Setting up cpp-5 (5.3.1-20ubuntu1) ... Setting up libcc1-0:i386 (6.1.1-4ubuntu11) ... Setting up libgcc-5-dev:i386 (5.3.1-20ubuntu1) ... Setting up gcc-5 (5.3.1-20ubuntu1) ... Setting up libstdc++-5-dev:i386 (5.3.1-20ubuntu1) ... Setting up g++-5 (5.3.1-20ubuntu1) ... Setting up dmsetup (2:1.02.124-1ubuntu1) ... Setting up libdpkg-perl (1.18.7ubuntu1) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.7ubuntu1) ... Setting up libpng12-0:i386 (1.2.54-6ubuntu1) ... Setting up linux-libc-dev:i386 (4.4.0-23.41) ... Setting up optipng (0.7.6-1build1) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-6ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9779050', 'i386', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=i386', '--dist=yakkety-proposed', '--purge=never', '--nolog', 't-coffee_11.00.8cbe486-3.dsc'] Initiating build PACKAGEBUILD-9779050 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-86-generic #131-Ubuntu SMP Thu May 12 23:33:13 UTC 2016 i686 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-39.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ t-coffee 11.00.8cbe486-3 (i386) 20 May 2016 17:25 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: t-coffee Version: 11.00.8cbe486-3 Source Version: 11.00.8cbe486-3 Distribution: yakkety-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/t-coffee-vaCTZi/t-coffee-11.00.8cbe486' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/t-coffee-vaCTZi' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9779050/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── t-coffee_11.00.8cbe486-3.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-_YKX14/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-_YKX14/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-_YKX14/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-_YKX14/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-_YKX14/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-_YKX14/apt_archive ./ Packages [527 B] Fetched 2854 B in 0s (169 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-_YKX14/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-_YKX14/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 772 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9) Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9) dpkg-deb: building package 'sbuild-build-depends-t-coffee-dummy' in '/«BUILDDIR»/resolver-24l2n9/apt_archive/sbuild-build-depends-t-coffee-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-24l2n9/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-24l2n9/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-24l2n9/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-24l2n9/apt_archive ./ Sources [422 B] Get:5 copy:/«BUILDDIR»/resolver-24l2n9/apt_archive ./ Packages [686 B] Fetched 3227 B in 0s (102 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-24l2n9/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install t-coffee build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-t-coffee-dummy 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 16.5 MB of archives. After this operation, 62.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-t-coffee-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-24l2n9/apt_archive ./ sbuild-build-depends-t-coffee-dummy 0.invalid.0 [930 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main i386 groff-base i386 1.22.3-7 [1160 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main i386 bsdmainutils i386 9.0.6ubuntu3 [175 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main i386 libpipeline1 i386 1.4.1-2 [26.5 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main i386 man-db i386 2.7.5-1 [865 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main i386 libunistring0 i386 0.9.3-5.2ubuntu1 [277 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main i386 libmagic1 i386 1:5.25-2ubuntu1 [222 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main i386 file i386 1:5.25-2ubuntu1 [21.1 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main i386 libasprintf0v5 i386 0.19.7-2ubuntu3 [6462 B] Get:10 http://ftpmaster.internal/ubuntu yakkety/main i386 gettext-base i386 0.19.7-2ubuntu3 [48.8 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main i386 libglib2.0-0 i386 2.48.1-1 [1185 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main i386 libicu57 i386 57.1-1 [7806 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main i386 libxml2 i386 2.9.3+dfsg1-1build1 [729 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main i386 libsigsegv2 i386 2.10-5 [14.3 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main i386 m4 i386 1.4.17-5 [195 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 autoconf all 2.69-10 [321 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 autotools-dev all 20160430.1 [39.6 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main i386 automake all 1:1.15-4ubuntu1 [510 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main i386 autopoint all 0.19.7-2ubuntu3 [406 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main i386 libcroco3 i386 0.6.11-1 [87.8 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main i386 gettext i386 0.19.7-2ubuntu3 [1085 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main i386 po-debconf all 1.0.19 [234 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main i386 libarchive-zip-perl all 1.57-1 [84.0 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main i386 libfile-stripnondeterminism-perl all 0.016-1 [11.0 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main i386 dh-strip-nondeterminism all 0.016-1 [4858 B] Get:28 http://ftpmaster.internal/ubuntu yakkety/main i386 libtool all 2.4.6-0.1 [193 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main i386 dh-autoreconf all 12 [15.8 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main i386 debhelper all 9.20160403ubuntu1 [711 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.5 MB in 2s (6283 kB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12208 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-7_i386.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_i386.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../libpipeline1_1.4.1-2_i386.deb ... 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Processing triggers for libc-bin (2.23-0ubuntu3) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-86-generic amd64 (i686) Toolchain package versions: binutils_2.26-9ubuntu1 dpkg-dev_1.18.7ubuntu1 g++-5_5.3.1-20ubuntu1 gcc-5_5.3.1-20ubuntu1 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-20ubuntu1 libstdc++6_6.1.1-4ubuntu11 linux-libc-dev_4.4.0-23.41 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~exp1 apt-transport-https_1.3~exp1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu1 base-passwd_3.5.39 bash_4.3-14ubuntu2 binutils_2.26-9ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28-5ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-20ubuntu1 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libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1 libicu57_57.1-1 libidn11_1.32-3ubuntu1 libisl15_0.16.1-1 libitm1_6.1.1-4ubuntu11 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.28-5ubuntu1 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libmpx0_5.3.1-20ubuntu1 libncurses5_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6ubuntu1 libpng16-16_1.6.21-5 libprocps4_2:3.3.10-4ubuntu2 libquadmath0_6.1.1-4ubuntu11 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28-5ubuntu1 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-20ubuntu1 libstdc++6_6.1.1-4ubuntu11 libsystemd0_229-6ubuntu1 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1ubuntu1 libtool_2.4.6-0.1 libubsan0_6.1.1-4ubuntu11 libudev1_229-6ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5ubuntu1 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libxml2_2.9.3+dfsg1-1build1 linux-libc-dev_4.4.0-23.41 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110ubuntu1 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.28-5ubuntu1 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.10-4ubuntu2 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-t-coffee-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_229-6ubuntu1 systemd-sysv_229-6ubuntu1 sysv-rc_2.88dsf-59.4ubuntu1 sysvinit-utils_2.88dsf-59.4ubuntu1 tar_1.29-1 tzdata_2016d-2 ubuntu-keyring_2016.05.13 util-linux_2.28-5ubuntu1 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Thu May 19 22:58:32 2016 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./t-coffee_11.00.8cbe486-3.dsc dpkg-source: info: extracting t-coffee in t-coffee-11.00.8cbe486 dpkg-source: info: unpacking t-coffee_11.00.8cbe486.orig.tar.gz dpkg-source: info: unpacking t-coffee_11.00.8cbe486-3.debian.tar.xz dpkg-source: info: applying probconsrna.patch dpkg-source: info: applying ncbi-blast++_has_dropped_pl_extension.patch dpkg-source: info: applying use_debian_packaged_TMalign.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying set_proper_dir_permissions.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying stable-linking-inputs.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: info: source package t-coffee dpkg-buildpackage: info: source version 11.00.8cbe486-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build t-coffee-11.00.8cbe486 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --sourcedirectory=t_coffee_source dh_testdir -O--sourcedirectory=t_coffee_source debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' rm -rf t_coffee_source/*.o t_coffee_source/t_coffee bin/t_coffee example/t_coffee.log bin/t_coffee rm -rf t_coffee_source/TMalign find . -name "*.o" -delete find . -name "*.deps" -delete chmod 644 example/* make[1]: Leaving directory '/«PKGBUILDDIR»' dh_clean -O--sourcedirectory=t_coffee_source debian/rules build-arch dh build-arch --sourcedirectory=t_coffee_source dh_testdir -a -O--sourcedirectory=t_coffee_source dh_update_autotools_config -a -O--sourcedirectory=t_coffee_source dh_auto_configure -a -O--sourcedirectory=t_coffee_source debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_build -- -i USER_BIN=../bin/ FCC="gfortran -g -O2 -fPIE -fstack-protector-strong" all make -j1 -i USER_BIN=../bin/ "FCC=gfortran -g -O2 -fPIE -fstack-protector-strong" all make[2]: Entering directory '/«PKGBUILDDIR»/t_coffee_source' CC dev_lib/dev1.c dev_lib/dev1.c: In function ‘void aln2hitMat(Alignment*, char*)’: dev_lib/dev1.c:89:43: warning: too many arguments for format [-Wformat-extra-args] fprintf (stdout, "Process positions\n", i); ^ CC dp_lib/CUSTOM_evaluate_for_struc.c CC dp_lib/evaluate.c dp_lib/evaluate.c: In function ‘Alignment* fork_triplet_coffee_evaluate_output(Alignment*, Constraint_list*, int)’: dp_lib/evaluate.c:808:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%d ", &res); ^ dp_lib/evaluate.c:813:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%f %f", &sseq, &mseq); ^ dp_lib/evaluate.c:818:38: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%f %f", &sseq, &mseq); ^ dp_lib/evaluate.c: In function ‘float** initialise_aa_physico_chemical_property_table(int*)’: dp_lib/evaluate.c:5644:43: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%f %c %*s",&v1, &c1 ); ^ CC dp_lib/evaluate_dirichlet.c dp_lib/evaluate_dirichlet.c: In function ‘Mixture* read_dirichlet(char*)’: dp_lib/evaluate_dirichlet.c:317:25: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%f\n", &f); ^ dp_lib/evaluate_dirichlet.c:319:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%f", &f); ^ dp_lib/evaluate_dirichlet.c:323:24: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%f", &f); ^ dp_lib/evaluate_dirichlet.c:326:19: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "\n"); ^ CC dp_lib/evaluate_for_domain.c CC dp_lib/evaluate_for_struc.c CC dp_lib/fsa_dp.c CC dp_lib/pavie_dp.c dp_lib/pavie_dp.c: In function ‘double** pavie_seq2pavie_aln(Sequence*, char*, char*)’: dp_lib/pavie_dp.c:127:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s\n",mat_list[nch++]); ^ dp_lib/pavie_dp.c: In function ‘char** output_pavie_mat_list(int***, double*, char**, int, char*, int, char**)’: dp_lib/pavie_dp.c:1079:24: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system (command); ^ dp_lib/pavie_dp.c:1081:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system (command); ^ dp_lib/pavie_dp.c: In function ‘Alignment* pavie_seq2pavie_msa(Sequence*, char*, char*)’: dp_lib/pavie_dp.c:1365:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s", mat); ^ CC dp_lib/showpair.c CC dp_lib/util_domain_dp.c CC dp_lib/util_domain_dp_drivers.c CC dp_lib/util_dp_cdna_fasta_nw.c CC dp_lib/util_dp_clean_maln.c CC dp_lib/util_dp_drivers.c dp_lib/util_dp_drivers.c: In function ‘Constraint_list* align_pdb_pair_2(char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:968:35: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* align_pdb_pair(char*, char*, char*, char*, Constraint_list*, Job_TC*)’: dp_lib/util_dp_drivers.c:996:35: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* hh_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1037:33: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c:1048:15: warning: ignoring return value of ‘char* tmpnam(char*)’, declared with attribute warn_unused_result [-Wunused-result] tmpnam(aln1); ^ dp_lib/util_dp_drivers.c:1049:15: warning: ignoring return value of ‘char* tmpnam(char*)’, declared with attribute warn_unused_result [-Wunused-result] tmpnam(aln2); ^ dp_lib/util_dp_drivers.c:1052:17: warning: ignoring return value of ‘char* tmpnam(char*)’, declared with attribute warn_unused_result [-Wunused-result] tmpnam(hhfile); ^ dp_lib/util_dp_drivers.c:1099:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf2, 10000, fp); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* profile_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1253:31: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* pdbid_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1388:33: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* pdb_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1445:33: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* thread_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1577:33: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* lsqman_pair(char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1652:33: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* sap_pair(char*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1744:35: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ dp_lib/util_dp_drivers.c:1792:35: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd (cdir, sizeof(char)*1000); ^ dp_lib/util_dp_drivers.c:1793:26: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir (get_cache_dir()); ^ dp_lib/util_dp_drivers.c:1813:15: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir (cdir); ^ dp_lib/util_dp_drivers.c: In function ‘Constraint_list* rnapdb_pair(TC_method*, char*, Constraint_list*)’: dp_lib/util_dp_drivers.c:1927:31: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(strtok (seq,SEPARATORS)); ^ CC dp_lib/util_dp_est.c CC dp_lib/util_dp_fasta_nw.c CC dp_lib/util_dp_fasta_sw.c CC dp_lib/util_dp_generic_fasta_nw.c CC dp_lib/util_dp_gotoh_nw.c CC dp_lib/util_dp_gotoh_sw.c dp_lib/util_dp_gotoh_sw.c: In function ‘int gotoh_pair_wise_sw(Alignment*, int*, int**, Constraint_list*)’: dp_lib/util_dp_gotoh_sw.c:391:55: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread ( &k, sizeof (TRACE_TYPE), 1, long_trace); ^ CC dp_lib/util_dp_mm_nw.c CC dp_lib/util_dp_sim.c CC dp_lib/util_dp_ssec_pwaln.c CC dp_lib/util_dp_suboptimal_nw.c CC dp_lib/util_graph_maln.c CC fastal/diagonal.c fastal/diagonal.c: In function ‘int seq_pair2blast_diagonal2(char*, char*, Diagonal**, int*, int, int, int)’: fastal/diagonal.c:434:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blast_command); ^ fastal/diagonal.c:439:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/diagonal.c:440:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/diagonal.c:441:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ CC fastal/fastal.c fastal/fastal.c: In function ‘int seq_pair2blast_diagonal(char*, char*, int**, int*, int, int, int)’: fastal/fastal.c:1924:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blast_command); ^ fastal/fastal.c:1929:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c:1930:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c:1931:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c:1976:24: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blast_command); ^ fastal/fastal.c:1980:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c:1981:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c:1982:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 300, diag_f); ^ fastal/fastal.c: In function ‘int seq_pair2blat_diagonal(char*, char*, int**, int*, int, int, int)’: fastal/fastal.c:2115:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blast_command); ^ fastal/fastal.c: In function ‘int seq_pair2blastz_diagonal(char*, char*, int**, int*, int, int, int)’: fastal/fastal.c:2262:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blast_command); ^ fastal/fastal.c: In function ‘void file_pos2profile(FILE*, long int, Fastal_profile*, int, Fastal_param*)’: fastal/fastal.c:3201:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line, LINE_LENGTH , seq_file); ^ fastal/fastal.c: In function ‘void profile_file2profile(Fastal_profile*, FILE*, long int, Fastal_param*)’: fastal/fastal.c:3323:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, profile_f); ^ fastal/fastal.c:3326:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, profile_f); ^ fastal/fastal.c:3329:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, profile_f); ^ fastal/fastal.c:3331:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, profile_f); ^ fastal/fastal.c:3333:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, profile_f); ^ fastal/fastal.c:3352:39: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , profile_f); ^ fastal/fastal.c: In function ‘void edit_seq2aligned_seq(char*, FILE*, long int, FILE*)’: fastal/fastal.c:3502:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line, LINE_LENGTH , sequence_file); ^ fastal/fastal.c: In function ‘void edit2alignment(FILE*, long int*, FILE*, long int*, int, int, char*, int, FILE*, int, FILE*)’: fastal/fastal.c:3575:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/fastal.c:3577:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/fastal.c:3579:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/fastal.c:3581:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/fastal.c:3643:60: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(aligned_sequence, alignment_length+3, edit_seq_file); ^ CC fastal/fastal_opt_parsing.c CC fastal/iteration.c fastal/iteration.c: In function ‘void split_set(FILE*, Fastal_profile*, Fastal_profile*, char*, int, int*, char*)’: fastal/iteration.c:185:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , alignment_file); ^ fastal/iteration.c: In function ‘void iterate(Fastal_param*, void*, char*, char*, int)’: fastal/iteration.c:310:44: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , alignment_file); ^ fastal/iteration.c:435:17: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command); ^ fastal/iteration.c: In function ‘void write_iterated_aln(char*, char*, char*, char*, int*, int, char*, int*, int)’: fastal/iteration.c:501:48: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(alnline, ALNLINE_LENGTH , old_aln_file); ^ fastal/iteration.c:504:48: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(alnline, ALNLINE_LENGTH , old_aln_file); ^ fastal/iteration.c:535:49: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(alnline, ALNLINE_LENGTH, old_aln_file); ^ fastal/iteration.c: In function ‘void edit2seq_pattern(FILE*, char*, char*)’: fastal/iteration.c:563:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/iteration.c:565:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/iteration.c:567:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ fastal/iteration.c:569:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH , edit_file); ^ CC fastal/parttree.c fastal/parttree.c: In function ‘int** make_distance_matrix_sim(FILE*, long int*, int*, int, int**)’: fastal/parttree.c:695:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 500, aln_f); ^ fastal/parttree.c:701:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 500, aln_f); ^ fastal/parttree.c: In function ‘void get_table(short int*, FILE*, long int)’: fastal/parttree.c:848:36: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, tables_f); ^ fastal/parttree.c:859:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, tables_f); ^ fastal/parttree.c: In function ‘int euclidean_dist(FILE*, long int, long int, short int*, short int*, int)’: fastal/parttree.c:891:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ fastal/parttree.c:903:35: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ fastal/parttree.c:906:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ fastal/parttree.c:912:35: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ fastal/parttree.c: In function ‘int euclidean_dist_half(FILE*, long int, short int*, short int*, int)’: fastal/parttree.c:951:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ fastal/parttree.c:962:35: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, ktup_f); ^ CC fastal/scoring.c fastal/scoring.c: In function ‘double calculate_sum_of_pairs_score_affine(char*, int**, double, double)’: fastal/scoring.c:76:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, alignment_file); ^ fastal/scoring.c:78:42: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, alignment_file); ^ fastal/scoring.c:82:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, alignment_file); ^ fastal/scoring.c: In function ‘void compute_ref_alignments(char*, char*, int, int)’: fastal/scoring.c:384:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, seq_file); ^ fastal/scoring.c:398:22: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(aln_command); ^ fastal/scoring.c: In function ‘void make_ref_alignment(char*, char*, char*, int)’: fastal/scoring.c:488:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, seq_f); ^ fastal/scoring.c:502:17: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command); ^ fastal/scoring.c: In function ‘double agreement_score(char*, char*)’: fastal/scoring.c:583:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, result); ^ fastal/scoring.c:584:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, result); ^ fastal/scoring.c:585:34: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINE_LENGTH, result); ^ CC fastal/tree.c CC io_lib/io_func.c io_lib/io_func.c: In function ‘int output_raw_score(Alignment*, Alignment*, char*)’: io_lib/io_func.c:1235:17: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null] if (!A)return NULL; ^ io_lib/io_func.c: In function ‘int** read_matrice(char*)’: io_lib/io_func.c:511:27: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "\n"); ^ io_lib/io_func.c: In function ‘void get_rgb_values(int, Color*)’: io_lib/io_func.c:971:115: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s %f %f %f", html_code[classC], &ps_code[classC][0], &ps_code[classC][1],&ps_code[classC][2]); ^ CC io_lib/pb_util_read_seq_util.c io_lib/pb_util_read_seq_util.c: In function ‘void getstr(char*, char*)’: io_lib/pb_util_read_seq_util.c:269:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(outstr, 100, stdin); ^ io_lib/pb_util_read_seq_util.c: In function ‘double getreal(char*, double, double, double)’: io_lib/pb_util_read_seq_util.c:280:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ io_lib/pb_util_read_seq_util.c: In function ‘int getint(char*, int, int, int)’: io_lib/pb_util_read_seq_util.c:305:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ io_lib/pb_util_read_seq_util.c: In function ‘void do_system()’: io_lib/pb_util_read_seq_util.c:327:15: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^ CC io_lib/pb_util_read_sequence.c io_lib/pb_util_read_sequence.c: In function ‘void get_clustal_seq(char*, char*, int*, char*, int)’: io_lib/pb_util_read_sequence.c:144:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE+1,fin); /* read the title line...ignore it */ ^ io_lib/pb_util_read_sequence.c:149:50: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for(i=1;iid); ^ km_coffee/km_coffee.c:157:209: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] sprintf(command,"t_coffee -in %li -output fasta_aln -outfile %li.fa -n_core %i -gapopen %i -gapext %i -method %s -quiet >/dev/null 2>/dev/null", current->id, current->id, n_cores, gapopen, gapext, method); ^ km_coffee/km_coffee.c:157:209: warning: format ‘%li’ expects argument of type ‘long int’, but argument 4 has type ‘size_t {aka unsigned int}’ [-Wformat=] km_coffee/km_coffee.c:159:201: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] sprintf(command,"t_coffee -in %li -output fasta_aln -outfile %s -n_core %i -gapopen %i -gapext %i -method %s -quiet >/dev/null 2>/dev/null ", current->id, out_f, n_cores, gapopen, gapext, method); ^ km_coffee/km_coffee.c:169:39: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] sprintf(command, "%li",current->id); ^ km_coffee/km_coffee.c:172:209: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] sprintf(command,"t_coffee -in %li -output fasta_aln -outfile %li.fa -n_core %i -gapopen %i -gapext %i -method %s -quiet >/dev/null 2>/dev/null", current->id, current->id, n_cores, gapopen, gapext, method); ^ km_coffee/km_coffee.c:172:209: warning: format ‘%li’ expects argument of type ‘long int’, but argument 4 has type ‘size_t {aka unsigned int}’ [-Wformat=] km_coffee/km_coffee.c:174:201: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] sprintf(command,"t_coffee -in %li -output fasta_aln -outfile %s -n_core %i -gapopen %i -gapext %i -method %s -quiet >/dev/null 2>/dev/null ", current->id, out_f, n_cores, gapopen, gapext, method); ^ km_coffee/km_coffee.c:185:42: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] sprintf(command, "%li.fa",current->id); ^ km_coffee/km_coffee.c:195:169: warning: format ‘%li’ expects argument of type ‘long int’, but argument 4 has type ‘size_t {aka unsigned int}’ [-Wformat=] sprintf(command, "t_coffee -output fasta_aln -method %s -quiet -outfile %li.fa -n_core %i -gapopen %i -profile FILE::prf.fa ", method, current->id,n_cores, gapopen); ^ km_coffee/km_coffee.c:201:57: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] fprintf(prf_F, "%li.fa\n", current->children[j]->id); ^ km_coffee/km_coffee.c: In function ‘int km_coffee_align3(char*, int, int, char*, char*, int, int, int, char*)’: km_coffee/km_coffee.c:491:19: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir(km_tmp_dir); ^ CC km_coffee/km_util.c km_coffee/km_util.c: In function ‘void* my_malloc(size_t)’: km_coffee/km_util.c:49:72: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] fprintf(stderr, "ERROR: Could not allocate space of size %li\n", size); ^ km_coffee/km_util.c: In function ‘void* my_calloc(size_t, size_t)’: km_coffee/km_util.c:61:76: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] fprintf(stderr, "ERROR: Could not allocate space of size %li\n", size*num); ^ km_coffee/km_util.c: In function ‘void* my_realloc(void*, size_t)’: km_coffee/km_util.c:74:72: warning: format ‘%li’ expects argument of type ‘long int’, but argument 3 has type ‘size_t {aka unsigned int}’ [-Wformat=] fprintf(stderr, "ERROR: Could not allocate space of size %li\n", size); ^ km_coffee/km_util.c: In function ‘char* my_make_temp_dir(char*, char*)’: km_coffee/km_util.c:96:70: warning: format ‘%s’ expects a matching ‘char*’ argument [-Wformat=] fprintf(stderr, "This error was caused by '%s' in '%s'\n", function); ^ CC km_coffee/kmeans.c CC t_coffee_lib/t_coffee.c t_coffee_lib/t_coffee.c: In function ‘int batch_main(int, char**)’: t_coffee_lib/t_coffee.c:3956:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system (command); ^ t_coffee_lib/t_coffee.c:3970:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system (command); ^ t_coffee_lib/t_coffee.c:3984:23: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system (command); ^ CC util_lib/aln_compare.c CC util_lib/aln_convertion_util.c util_lib/aln_convertion_util.c: In function ‘Alignment* extract_aln3(Alignment*, char*)’: util_lib/aln_convertion_util.c:7269:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line, VERY_LONG_STRING,fp); ^ util_lib/aln_convertion_util.c:7288:59: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if ( c=='#' || c=='!')fgets ( line, VERY_LONG_STRING,fp); ^ util_lib/aln_convertion_util.c:7292:41: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line, VERY_LONG_STRING,fp); ^ CC util_lib/hsearch.c CC util_lib/random.c CC util_lib/reformat.c util_lib/reformat.c: In function ‘void modify_data(Sequence_data_struc*, Sequence_data_struc*, Sequence_data_struc*, char**, int, Action_data_struc*)’: util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:10953:35: note: in expansion of macro ‘ATOI_ACTION’ (D1->A)=aln2bootstrap (D1->A, ATOI_ACTION (1)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:10958:32: note: in expansion of macro ‘ATOI_ACTION’ (D1->A)=aln2sample (D1->A, ATOI_ACTION (1)); ^ util_lib/reformat.c:11157:36: warning: null argument where non-null required (argument 1) [-Wnonnull] if (ACTION(2))D=atof (ACTION(2)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11183:38: note: in expansion of macro ‘ATOI_ACTION’ else TS=treelist2sub_seq((D1->S),ATOI_ACTION(1)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11282:38: note: in expansion of macro ‘ATOI_ACTION’ else TS=treelist2sub_seq((D1->S),ATOI_ACTION(2)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11283:34: note: in expansion of macro ‘ATOI_ACTION’ treelist2lti (D1->S,TS, (int)ATOI_ACTION(1), stdout ); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11290:38: note: in expansion of macro ‘ATOI_ACTION’ else TS=treelist2sub_seq((D1->S),ATOI_ACTION(1)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11297:35: note: in expansion of macro ‘ATOI_ACTION’ D1->S=treelist2sub_seq (D1->S,ATOI_ACTION(1)); ^ util_lib/reformat.c:11325:27: warning: null argument where non-null required (argument 1) [-Wnonnull] ng=atoi(ACTION (2))+1; ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11444:44: note: in expansion of macro ‘ATOI_ACTION’ D1->T= aln2km_tree(D1->A, (ACTION(1)), ATOI_ACTION(2)); ^ util_lib/reformat.c:11530:47: warning: null argument where non-null required (argument 1) [-Wnonnull] if (ACTION(na+1))max=atof(ACTION(na+1)); ^ util_lib/reformat.c:11531:47: warning: null argument where non-null required (argument 1) [-Wnonnull] if (ACTION(na+2))enb=atoi(ACTION(na+2)); ^ util_lib/reformat.c:11539:47: warning: null argument where non-null required (argument 1) [-Wnonnull] if (ACTION(na+1))max=atof(ACTION(na+1)); ^ util_lib/reformat.c:11540:47: warning: null argument where non-null required (argument 1) [-Wnonnull] if (ACTION(na+2))enb=atoi(ACTION(na+2)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:11669:37: note: in expansion of macro ‘ATOI_ACTION’ D1->A=aln2conservation ( D1->A, ATOI_ACTION (1), ACTION (2)); ^ util_lib/reformat.c:12301:36: warning: null argument where non-null required (argument 1) [-Wnonnull] else if (strstr (ACTION(1), "h")) ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12308:10: note: in expansion of macro ‘ATOI_ACTION’ F->t=ATOI_ACTION(2); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12309:10: note: in expansion of macro ‘ATOI_ACTION’ F->f=ATOI_ACTION(3); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12310:11: note: in expansion of macro ‘ATOI_ACTION’ F->p1=ATOI_ACTION(4); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12311:11: note: in expansion of macro ‘ATOI_ACTION’ F->p2=ATOI_ACTION(5); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12312:11: note: in expansion of macro ‘ATOI_ACTION’ F->p3=ATOI_ACTION(6); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12313:11: note: in expansion of macro ‘ATOI_ACTION’ F->p3=ATOI_ACTION(7); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12336:34: note: in expansion of macro ‘ATOI_ACTION’ D1->A=unalign_aln (D1->A,SA, ATOI_ACTION(1)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12476:10: note: in expansion of macro ‘ATOI_ACTION’ if (!ATOI_ACTION(1))myexit(fprintf_error (stderr,"-kmeans ")); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12477:19: note: in expansion of macro ‘ATOI_ACTION’ km_seq (D1->A,ATOI_ACTION (1),ACTION(2),ACTION(3)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12481:27: note: in expansion of macro ‘ATOI_ACTION’ D1->A=gap_trim (D1->A,ATOI_ACTION(1)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:12488:34: note: in expansion of macro ‘ATOI_ACTION’ D1->A=trim_RNA(D1->A, D2->S, ATOI_ACTION(1)); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:13008:7: note: in expansion of macro ‘ATOI_ACTION’ t=ATOI_ACTION(1); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:13009:7: note: in expansion of macro ‘ATOI_ACTION’ f=ATOI_ACTION(2); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:13010:8: note: in expansion of macro ‘ATOI_ACTION’ p1=ATOI_ACTION(3); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:13011:8: note: in expansion of macro ‘ATOI_ACTION’ p2=ATOI_ACTION(4); ^ util_lib/reformat.c:43:58: warning: null argument where non-null required (argument 1) [-Wnonnull] #define ATOI_ACTION(x) ((ACTION(x)!=NULL)?(atoi(ACTION(x))):0) ^ util_lib/reformat.c:13012:8: note: in expansion of macro ‘ATOI_ACTION’ p3=ATOI_ACTION(5); ^ util_lib/reformat.c: In function ‘int is_pdb_name(char*)’: util_lib/reformat.c:1502:34: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%d", &result); ^ util_lib/reformat.c: In function ‘char* get_pdb_id(char*)’: util_lib/reformat.c:1540:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "\n%s\n", buf); ^ util_lib/reformat.c: In function ‘int format_is_msf(char*)’: util_lib/reformat.c:2092:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp , "%s", buf); ^ util_lib/reformat.c: In function ‘Weights* get_amps_sd_scores(char*)’: util_lib/reformat.c:3590:26: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s", buf2); ^ util_lib/reformat.c:3597:27: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s", buf2); ^ util_lib/reformat.c:3606:26: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s", buf2); ^ util_lib/reformat.c:3612:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s",W->seq_name[a]); ^ util_lib/reformat.c:3614:27: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s", buf2); ^ util_lib/reformat.c:3625:21: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "\n"); ^ util_lib/reformat.c: In function ‘Structure* read_rna_struc_number(Alignment*, char*)’: util_lib/reformat.c:3898:46: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%c\n%d\n",&x, &(ST)->tot_list); ^ util_lib/reformat.c:3901:105: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%d %d %d %c %c %f\n", &(ST)->list[a][0],&(ST)->list[a][1],&(ST)->list[a][2], &x, &y, &f); ^ util_lib/reformat.c: In function ‘Sequence* get_struc_gor(char*)’: util_lib/reformat.c:4098:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s %d", name, &len); ^ util_lib/reformat.c:4119:63: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s %d\n",S->name[S->nseq], &(S->len[S->nseq])); ^ util_lib/reformat.c:4124:66: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, " %*c %c %*f %*f %*f\n",&(S->seq[S->nseq][a])); ^ util_lib/reformat.c: In function ‘Sequence* get_sequence_dali(char*)’: util_lib/reformat.c:4161:26: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s",name); ^ util_lib/reformat.c: In function ‘Sequence* get_dialign_sequence(char*)’: util_lib/reformat.c:4236:27: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] {fscanf (fp, "%s",name); ^ util_lib/reformat.c: In function ‘Sequence* get_swissprot_sequence(char*, char*)’: util_lib/reformat.c:5281:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, LONG_STRING, fp); ^ util_lib/reformat.c:5300:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, LONG_STRING, fp); ^ util_lib/reformat.c: In function ‘int fscanf_seq_name(FILE*, char*)’: util_lib/reformat.c:5319:25: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s", name); ^ util_lib/reformat.c: In function ‘int get_amps_seq_name(char**, char*)’: util_lib/reformat.c:5672:40: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] {fscanf (fp, "%*d >%s", name[nseq++]); ^ util_lib/reformat.c: In function ‘Alignment* read_gotoh_aln(char*, Alignment*)’: util_lib/reformat.c:5721:39: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, VERY_LONG_STRING, fp); ^ util_lib/reformat.c:5743:39: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, VERY_LONG_STRING, fp); ^ util_lib/reformat.c: In function ‘float output_maln_pval(char*, Alignment*)’: util_lib/reformat.c:5941:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s",string); ^ util_lib/reformat.c: In function ‘Alignment* similarities_file2aln(char*)’: util_lib/reformat.c:6106:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s %d", name,&i); ^ util_lib/reformat.c: In function ‘int** read_blast_matrix(char*)’: util_lib/reformat.c:13557:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s ", buf); ^ util_lib/reformat.c:13570:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%d ", &value); ^ util_lib/reformat.c:13595:22: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "\n"); ^ util_lib/reformat.c: In function ‘int** read_blast_matrix_old(char*)’: util_lib/reformat.c:13620:41: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( sbuf, VERY_LONG_STRING, fp); ^ util_lib/reformat.c:13637:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s ", buf); ^ util_lib/reformat.c:13650:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%d ", &value); ^ util_lib/reformat.c:13677:22: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "\n"); ^ util_lib/reformat.c: In function ‘int** read_pavie_matrix(char*)’: util_lib/reformat.c:13788:41: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( sbuf, VERY_LONG_STRING, fp); ^ CC util_lib/reformat_struc.c util_lib/reformat_struc.c: In function ‘Ca_trace* simple_read_ca_trace(char*)’: util_lib/reformat_struc.c:326:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%*s" ); ^ util_lib/reformat_struc.c:328:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%*s" ); ^ util_lib/reformat_struc.c:334:69: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%*s %*s %c %*c %d %*f %*f %*f\n",&res,&res_num); ^ util_lib/reformat_struc.c:361:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%*s" ); ^ util_lib/reformat_struc.c:363:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%*s" ); ^ util_lib/reformat_struc.c:372:100: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%*s %s %s %*c %d %f %f %f\n",A->type, A->res,&A->res_num, &A->x, &A->y, &A->z); ^ CC util_lib/util.c util_lib/util.c: In function ‘FILE* hsort_file(FILE*, int, int, size_t, int, int, int (*)(const void*, const void*, int, int, size_t), void* (*)(void*, void*, size_t))’: util_lib/util.c:281:31: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( rra, size, len,fp); /*rra=ra[--l]*/ ^ util_lib/util.c:286:31: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( rra, size, len,fp); /*rra=ra[ir]*/ ^ util_lib/util.c:289:31: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( rrb, size, len,fp); /*rrb=ra[0]*/ ^ util_lib/util.c:306:36: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (ra_j, size, len, fp); ^ util_lib/util.c:311:34: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (ra_j_1, size, len, fp); ^ util_lib/util.c: In function ‘void* bsearch_file(const void*, int*, int, int, FILE*, int, int, size_t, int (*)(const void*, const void*, int, int, size_t))’: util_lib/util.c:420:43: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread ( key2, el_size, entry_len,fp); ^ util_lib/util.c: In function ‘FILE* get_number_list_in_file(FILE*, int*, int*, int*)’: util_lib/util.c:847:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%d",&list[n[0]++]); ^ util_lib/util.c: In function ‘int quantile(int, char**)’: util_lib/util.c:906:38: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s %s\n", s1, s2); ^ util_lib/util.c: In function ‘int** input_array_int(char*)’: util_lib/util.c:1262:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%d\n", &len); ^ util_lib/util.c:1266:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d ", &len2); ^ util_lib/util.c:1269:33: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d ", &array[a][b]); ^ util_lib/util.c:1270:24: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "\n"); ^ util_lib/util.c: In function ‘int perl_strstr(char*, char*)’: util_lib/util.c:1925:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%d", &r); ^ util_lib/util.c: In function ‘char* count_strings_in_file(char*, char*)’: util_lib/util.c:5090:34: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%s\n",list[n]); ^ util_lib/util.c: In function ‘int get_cl_param(int, char**, FILE**, const char*, int*, const char*, int, int, const char*, ...)’: util_lib/util.c:6571:22: warning: second parameter of ‘va_start’ not last named argument [-Wvarargs] va_start (ap, usage); ^ util_lib/util.c: In function ‘char** get_parameter(char*, int*, char*)’: util_lib/util.c:6838:36: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line, VERY_LONG_STRING,fp); ^ util_lib/util.c: In function ‘FILE* set_fp_id(FILE*, char*)’: util_lib/util.c:6858:30: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s", string); ^ util_lib/util.c: In function ‘int** get_file_block_pattern(char*, int*, int)’: util_lib/util.c:7214:28: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line, lline,fp); ^ util_lib/util.c:7244:28: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line, lline,fp); ^ util_lib/util.c: In function ‘int check_for_update(char*)’: util_lib/util.c:7331:43: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "Version_%f", &new_version); ^ CC util_lib/util_aln_analyze.c CC util_lib/util_analyse_constraints_list.c CC util_lib/util_constraints_list.c util_lib/util_constraints_list.c: In function ‘Constraint_list* fork_read_n_constraint_list(char**, int, char*, char*, char*, char*, FILE*, Constraint_list*, char*, int)’: util_lib/util_constraints_list.c:2163:81: warning: too many arguments for format [-Wformat-extra-args] fprintf ( local_stderr, "\n\t--- Process Method/Library/Aln %s", fname[a], ns); ^ util_lib/util_constraints_list.c: In function ‘Constraint_list* read_constraint_list_file(Constraint_list*, char*)’: util_lib/util_constraints_list.c:2775:76: warning: too many arguments for format [-Wformat-extra-args] x=sscanf (buf, "%s %d %d %d %d %d",arg, &length, &r1,&r2,&we,&cons,&misc); ^ util_lib/util_constraints_list.c: In function ‘Job_TC* submit_lib_job(Job_TC*)’: util_lib/util_constraints_list.c:577:18: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir (tdir); ^ util_lib/util_constraints_list.c:580:18: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir (cdir); ^ util_lib/util_constraints_list.c: In function ‘char* method_file_tag2value(char*, char*)’: util_lib/util_constraints_list.c:1140:32: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line,LONG_STRING, fp); ^ util_lib/util_constraints_list.c: In function ‘TC_method* method_file2TC_method(char*)’: util_lib/util_constraints_list.c:1182:32: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets ( line,LONG_STRING, fp); ^ util_lib/util_constraints_list.c: In function ‘int read_cpu_in_list(char*)’: util_lib/util_constraints_list.c:2525:42: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] if ( c=='C')fscanf( fp, "PU %d\n", &cpu); ^ util_lib/util_constraints_list.c: In function ‘int read_seq_in_list(char*, int*, char***, char***, Genomic_info**)’: util_lib/util_constraints_list.c:2833:32: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%d\n", &max_nseq); ^ util_lib/util_constraints_list.c:2838:34: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%*s %d %*s\n", &l); ^ util_lib/util_constraints_list.c:2870:55: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf ( fp, "%s %d %s\n", name, &seq_len, sequence); ^ util_lib/util_constraints_list.c:2895:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line , 200 , fp); ^ util_lib/util_constraints_list.c: In function ‘Constraint_list* nfork_relax_constraint_list_4gp(Constraint_list*)’: util_lib/util_constraints_list.c:3903:55: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%d ", &CL->residue_index[s][r][a+WE]); ^ CC util_lib/util_declare.c CC util_lib/util_domain_constraints_list.c CC util_lib/util_dps.c CC util_lib/util_job_handling.c CC util_lib/util_make_tree.c Linking... dp_lib/util_dp_drivers.o: In function `hh_pair(TC_method*, char*, Constraint_list*)': /«PKGBUILDDIR»/t_coffee_source/dp_lib/util_dp_drivers.c:1048: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[2]: Leaving directory '/«PKGBUILDDIR»/t_coffee_source' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test -a -O--sourcedirectory=t_coffee_source fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=t_coffee_source dh_testroot -a -O--sourcedirectory=t_coffee_source dh_prep -a -O--sourcedirectory=t_coffee_source dh_auto_install -a -O--sourcedirectory=t_coffee_source dh_install -a -O--sourcedirectory=t_coffee_source dh_installdocs -a -O--sourcedirectory=t_coffee_source dh_installchangelogs -a -O--sourcedirectory=t_coffee_source dh_installman -a -O--sourcedirectory=t_coffee_source dh_perl -a -O--sourcedirectory=t_coffee_source dh_link -a -O--sourcedirectory=t_coffee_source dh_strip_nondeterminism -a -O--sourcedirectory=t_coffee_source debian/rules override_dh_compress make[1]: Entering directory '/«PKGBUILDDIR»' #Compressing most of the files in examples/ makes them unusable dh_compress -Xt-coffee-examples ( cd debian/t-coffee-examples/ && \ chmod 644 usr/share/doc/t-coffee-examples/changelog.Debian && \ gzip -9 -n usr/share/doc/t-coffee-examples/changelog.Debian ) || true /bin/sh: 1: cd: can't cd to debian/t-coffee-examples/ make[1]: Leaving directory '/«PKGBUILDDIR»' dh_fixperms -a -O--sourcedirectory=t_coffee_source dh_strip -a -O--sourcedirectory=t_coffee_source dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: t-coffee dh_strip debug symbol extraction: packages to act on: t-coffee dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a -O--sourcedirectory=t_coffee_source dh_shlibdeps -a -O--sourcedirectory=t_coffee_source dh_installdeb -a -O--sourcedirectory=t_coffee_source dh_gencontrol -a -O--sourcedirectory=t_coffee_source dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform i386: t-coffee dh_gencontrol debug symbol wrapper: packages to act on: t-coffee dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package t-coffee (pkgdir debian/t-coffee, ddeb package dir debian/t-coffee-dbgsym) dh_gencontrol debug symbol wrapper: building t-coffee-dbgsym_11.00.8cbe486-3_i386.ddeb dpkg-deb: building package 't-coffee-dbgsym' in '../t-coffee-dbgsym_11.00.8cbe486-3_i386.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile t-coffee-dbgsym_11.00.8cbe486-3_i386.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O--sourcedirectory=t_coffee_source dh_builddeb -a -O--sourcedirectory=t_coffee_source INFO: pkgstriptranslations version 129 pkgstriptranslations: processing t-coffee (in debian/t-coffee); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/t-coffee/DEBIAN/control, package t-coffee, directory debian/t-coffee pkgstripfiles: Truncating usr/share/doc/t-coffee/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package t-coffee ... pkgstripfiles: No PNG files. dpkg-deb: building package 't-coffee' in '../t-coffee_11.00.8cbe486-3_i386.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../t-coffee_11.00.8cbe486-3_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build t-coffee-11.00.8cbe486 dpkg-buildpackage: info: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160520-1727 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ t-coffee_11.00.8cbe486-3_i386.changes: ────────────────────────────────────── Format: 1.8 Date: Thu, 19 May 2016 20:52:28 +0000 Source: t-coffee Binary: t-coffee t-coffee-examples Architecture: i386 Version: 11.00.8cbe486-3 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: t-coffee - Multiple Sequence Alignment t-coffee-examples - annotated examples for the use of T-Coffee Changes: t-coffee (11.00.8cbe486-3) unstable; urgency=medium . * Team upload. * Force stable linking order to make build reproducible. * Bump Standards-Version. * Enable full hardening. * Use secure Vcs-Browser. Checksums-Sha1: 821e5a144ca379bbcb794948ac50bdc97813c08c 1375276 t-coffee-dbgsym_11.00.8cbe486-3_i386.ddeb a283bd3b4557fc52ac30c3bb2234acb9891f974c 961080 t-coffee_11.00.8cbe486-3_i386.deb Checksums-Sha256: 335a1013311d386ef875add7b157609447d0e20d1b31d1666679fb1a2925554d 1375276 t-coffee-dbgsym_11.00.8cbe486-3_i386.ddeb 858df44f70423138007c394c6bef98ce66d489d3202b3c19afe2eeb4a86c986c 961080 t-coffee_11.00.8cbe486-3_i386.deb Files: 5c0dde1bbb66fbbd8785255108e6af67 1375276 science extra t-coffee-dbgsym_11.00.8cbe486-3_i386.ddeb a537bc51ea209bf2059a0b1b8781302d 961080 science optional t-coffee_11.00.8cbe486-3_i386.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ t-coffee_11.00.8cbe486-3_i386.deb ───────────────────────────────── new debian package, version 2.0. size 961080 bytes: control archive=1299 bytes. 1679 bytes, 30 lines control 333 bytes, 5 lines md5sums Package: t-coffee Version: 11.00.8cbe486-3 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2854 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libstdc++6 (>= 4.1.1) Recommends: amap-align, clustalo, clustalw, dialign-tx, kalign, libsoap-lite-perl, libxml-simple-perl, mafft, muscle, mustang, ncbi-blast+, poa, prank, probcons, proda, tm-align Suggests: boxshade, seaview, t-coffee-examples, fsa Section: science Priority: optional Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html Description: Multiple Sequence Alignment T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures. . T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information . T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer. drwxr-xr-x root/root 0 2016-05-20 17:27 ./ drwxr-xr-x root/root 0 2016-05-20 17:27 ./usr/ drwxr-xr-x root/root 0 2016-05-20 17:27 ./usr/bin/ -rwxr-xr-x root/root 2904016 2016-05-20 17:27 ./usr/bin/t_coffee drwxr-xr-x root/root 0 2016-05-20 17:27 ./usr/share/ drwxr-xr-x root/root 0 2016-05-20 17:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-05-20 17:27 ./usr/share/doc/t-coffee/ -rw-r--r-- root/root 1744 2013-09-12 08:59 ./usr/share/doc/t-coffee/README.Debian -rw-r--r-- root/root 1836 2016-05-20 17:27 ./usr/share/doc/t-coffee/changelog.Debian.gz -rw-r--r-- root/root 1432 2015-12-21 20:58 ./usr/share/doc/t-coffee/copyright drwxr-xr-x root/root 0 2016-05-20 17:27 ./usr/share/man/ drwxr-xr-x root/root 0 2016-05-20 17:27 ./usr/share/man/man1/ -rw-r--r-- root/root 1463 2016-05-20 17:27 ./usr/share/man/man1/t_coffee.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: i386 Build-Space: 39404 Build-Time: 143 Distribution: yakkety-proposed Host Architecture: i386 Install-Time: 17 Job: t-coffee_11.00.8cbe486-3.dsc Machine Architecture: amd64 Package: t-coffee Package-Time: 161 Source-Version: 11.00.8cbe486-3 Space: 39404 Status: successful Version: 11.00.8cbe486-3 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160520-1727 Build needed 00:02:41, 39404k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9779050'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9779050/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9779050'] Unmounting chroot for build PACKAGEBUILD-9779050... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9779050'] Removing build PACKAGEBUILD-9779050