RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-013 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:26:02 UTC 2017 ppc64le Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 1 Nov 16:21:38 ntpdate[1740]: adjust time server 10.211.37.1 offset -0.000867 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13661627 /home/buildd/filecache-default/64ab4a3b1843816d631a3747c16f42fa2d8de59d Creating target for build PACKAGEBUILD-13661627 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13661627 Starting target for build PACKAGEBUILD-13661627 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13661627 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13661627 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13661627 Updating target for build PACKAGEBUILD-13661627 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el Packages [1015 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [541 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe ppc64el Packages [7847 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4790 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el Packages [92.5 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [52.8 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el Packages [199 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [136 kB] Fetched 15.1 MB in 3s (4522 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: apt-transport-https* The following NEW packages will be installed: liblsan0 libtsan0 The following packages will be upgraded: apt base-files base-passwd binutils binutils-common binutils-powerpc64le-linux-gnu build-essential coreutils cpp-7 debconf dpkg dpkg-dev e2fslibs e2fsprogs g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcomerr2 libcurl3-gnutls libdpkg-perl libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libhogweed4 libitm1 libkeyutils1 libnettle6 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libsystemd0 libubsan0 libudev1 linux-libc-dev multiarch-support perl perl-base perl-modules-5.26 pinentry-curses systemd systemd-sysv tzdata 69 upgraded, 2 newly installed, 1 to remove and 0 not upgraded. Need to get 54.9 MB of archives. After this operation, 8159 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main ppc64el base-files ppc64el 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main ppc64el coreutils ppc64el 8.26-3ubuntu4 [1251 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main ppc64el dpkg ppc64el 1.19.0.4ubuntu1 [1149 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc6-dev ppc64el 2.26-0ubuntu2 [2458 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc-dev-bin ppc64el 2.26-0ubuntu2 [65.4 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main ppc64el linux-libc-dev ppc64el 4.13.0-16.19 [946 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgomp1 ppc64el 7.2.0-12ubuntu1 [69.3 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main ppc64el libitm1 ppc64el 7.2.0-12ubuntu1 [29.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main ppc64el gcc-7-base ppc64el 7.2.0-12ubuntu1 [18.3 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcc1 ppc64el 1:7.2.0-12ubuntu1 [29.7 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main ppc64el libatomic1 ppc64el 7.2.0-12ubuntu1 [8496 B] Get:12 http://ftpmaster.internal/ubuntu bionic/main ppc64el libasan4 ppc64el 7.2.0-12ubuntu1 [369 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblsan0 ppc64el 7.2.0-12ubuntu1 [134 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtsan0 ppc64el 7.2.0-12ubuntu1 [289 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main ppc64el libubsan0 ppc64el 7.2.0-12ubuntu1 [136 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main ppc64el cpp-7 ppc64el 7.2.0-12ubuntu1 [6261 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcc1-0 ppc64el 7.2.0-12ubuntu1 [39.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main ppc64el g++-7 ppc64el 7.2.0-12ubuntu1 [7105 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main ppc64el gcc-7 ppc64el 7.2.0-12ubuntu1 [6898 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcc-7-dev ppc64el 7.2.0-12ubuntu1 [985 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main ppc64el libstdc++-7-dev ppc64el 7.2.0-12ubuntu1 [1526 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main ppc64el libstdc++6 ppc64el 7.2.0-12ubuntu1 [449 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libgmp10 ppc64el 2:6.1.2+dfsg-1.1 [218 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main ppc64el libbinutils ppc64el 2.29.1-6ubuntu1 [457 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main ppc64el binutils ppc64el 2.29.1-6ubuntu1 [3330 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main ppc64el binutils-common ppc64el 2.29.1-6ubuntu1 [190 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.29.1-6ubuntu1 [1969 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc6 ppc64el 2.26-0ubuntu2 [2619 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el e2fslibs ppc64el 1.43.7-1 [173 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el e2fsprogs ppc64el 1.43.7-1 [510 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el perl-modules-5.26 all 5.26.1-2ubuntu1 [2760 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libperl5.26 ppc64el 5.26.1-2ubuntu1 [3405 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el perl ppc64el 5.26.1-2ubuntu1 [201 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el perl-base ppc64el 5.26.1-2ubuntu1 [1303 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el base-passwd ppc64el 3.5.44 [50.1 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc-bin ppc64el 2.26-0ubuntu2 [573 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libudev1 ppc64el 235-2ubuntu1 [60.5 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libapt-pkg5.0 ppc64el 1.6~alpha3 [879 kB] Get:39 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libgpg-error0 ppc64el 1.27-4 [42.1 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcrypt20 ppc64el 1.7.9-1 [438 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpgv ppc64el 2.1.15-1ubuntu8 [218 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main ppc64el libseccomp2 ppc64el 2.3.1-2.1ubuntu3 [47.2 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el apt ppc64el 1.6~alpha3 [1191 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el debconf all 1.5.64 [124 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcap2 ppc64el 1:2.25-1.1 [13.7 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre3 ppc64el 2:8.39-5ubuntu3 [224 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libselinux1 ppc64el 2.7-2 [78.6 kB] Get:48 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el systemd ppc64el 235-2ubuntu1 [2958 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libsystemd0 ppc64el 235-2ubuntu1 [213 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el systemd-sysv ppc64el 235-2ubuntu1 [12.7 kB] Get:51 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcap-ng0 ppc64el 0.7.7-3.1 [11.6 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcomerr2 ppc64el 1.43.7-1 [11.6 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsemanage-common all 2.7-2 [6916 B] Get:54 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsemanage1 ppc64el 2.7-2 [85.4 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libss2 ppc64el 1.43.7-1 [11.4 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnettle6 ppc64el 3.3-2 [120 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhogweed4 ppc64el 3.3-2 [134 kB] Get:58 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libp11-kit0 ppc64el 0.23.9-2 [167 kB] Get:59 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el pinentry-curses ppc64el 1.0.0-3 [37.5 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg ppc64el 2.1.15-1ubuntu8 [847 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg-agent ppc64el 2.1.15-1ubuntu8 [291 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsqlite3-0 ppc64el 3.20.1-2 [464 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main ppc64el multiarch-support ppc64el 2.26-0ubuntu2 [6832 B] Get:64 http://ftpmaster.internal/ubuntu bionic/main ppc64el tzdata all 2017c-1 [188 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main ppc64el libkeyutils1 ppc64el 1.5.9-9.1ubuntu1 [9896 B] Get:66 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpng16-16 ppc64el 1.6.34-1 [200 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main ppc64el dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main ppc64el build-essential ppc64el 12.4ubuntu1 [4754 B] Get:70 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libpsl5 ppc64el 0.18.0-4 [42.6 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcurl3-gnutls ppc64el 7.55.1-1ubuntu2.1 [197 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.9 MB in 4s (13.3 MB/s) (Reading database ... 12537 files and directories currently installed.) 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Setting up systemd-sysv (235-2ubuntu1) ... Setting up libubsan0:ppc64el (7.2.0-12ubuntu1) ... Setting up libtsan0:ppc64el (7.2.0-12ubuntu1) ... Setting up linux-libc-dev:ppc64el (4.13.0-16.19) ... Setting up perl-modules-5.26 (5.26.1-2ubuntu1) ... Setting up cpp-7 (7.2.0-12ubuntu1) ... Setting up liblsan0:ppc64el (7.2.0-12ubuntu1) ... Setting up binutils-common:ppc64el (2.29.1-6ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libperl5.26:ppc64el (5.26.1-2ubuntu1) ... Setting up libsqlite3-0:ppc64el (3.20.1-2) ... Setting up pinentry-curses (1.0.0-3) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up libkeyutils1:ppc64el (1.5.9-9.1ubuntu1) ... Setting up gnupg-agent (2.1.15-1ubuntu8) ... Setting up libc6-dev:ppc64el (2.26-0ubuntu2) ... Setting up libitm1:ppc64el (7.2.0-12ubuntu1) ... Setting up libbinutils:ppc64el (2.29.1-6ubuntu1) ... Setting up libcurl3-gnutls:ppc64el (7.55.1-1ubuntu2.1) ... Setting up binutils-powerpc64le-linux-gnu (2.29.1-6ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libgcc-7-dev:ppc64el (7.2.0-12ubuntu1) ... Setting up libstdc++-7-dev:ppc64el (7.2.0-12ubuntu1) ... Setting up perl (5.26.1-2ubuntu1) ... Setting up binutils (2.29.1-6ubuntu1) ... Setting up gcc-7 (7.2.0-12ubuntu1) ... Setting up g++-7 (7.2.0-12ubuntu1) ... Setting up libdpkg-perl (1.19.0.4ubuntu1) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13661627 ppc64el bionic-proposed -c chroot:build-PACKAGEBUILD-13661627 --arch=ppc64el --dist=bionic-proposed --nolog r-bioc-genefilter_1.58.1-2.dsc Initiating build PACKAGEBUILD-13661627 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:26:02 UTC 2017 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-ppc64el-013.buildd +==============================================================================+ | r-bioc-genefilter 1.58.1-2 (ppc64el) 01 Nov 2017 16:22 | +==============================================================================+ Package: r-bioc-genefilter Version: 1.58.1-2 Source Version: 1.58.1-2 Distribution: bionic-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/r-bioc-genefilter-k_oR52/r-bioc-genefilter-1.58.1' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-genefilter-k_oR52' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13661627/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-genefilter_1.58.1-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-pJqssL/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-pJqssL/apt_archive ./ InRelease Get:2 copy:/<>/resolver-pJqssL/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-pJqssL/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-pJqssL/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-pJqssL/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (210 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-pJqssL/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12543 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), dh-r, r-base-dev, r-bioc-annotationdbi, r-bioc-annotate, r-cran-survival Filtered Build-Depends: debhelper (>= 10), dh-r, r-base-dev, r-bioc-annotationdbi, r-bioc-annotate, r-cran-survival dpkg-deb: building package 'sbuild-build-depends-r-bioc-genefilter-dummy' in '/<>/resolver-hFiFXZ/apt_archive/sbuild-build-depends-r-bioc-genefilter-dummy.deb'. Ign:1 copy:/<>/resolver-hFiFXZ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hFiFXZ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-hFiFXZ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hFiFXZ/apt_archive ./ Sources [252 B] Get:5 copy:/<>/resolver-hFiFXZ/apt_archive ./ Packages [572 B] Fetched 2943 B in 0s (276 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-genefilter build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libcurl3-gnutls Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7 groff-base icu-devtools intltool intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu59 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db mime-support netbase perl-openssl-defaults pkg-config po-debconf python python-minimal python-pkg-resources python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors r-cran-bitops r-cran-dbi r-cran-digest r-cran-lattice r-cran-littler r-cran-matrix r-cran-memoise r-cran-pkgkitten r-cran-rcpp r-cran-rcurl r-cran-rsqlite r-cran-survival r-cran-xml r-cran-xtable ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation devscripts debtags dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff liblapack-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libauthen-ntlm-perl m4-doc less www-browser libmail-box-perl python-doc python-tk python-setuptools python-rsvg python-cairo python2.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genefilter r-bioc-biostrings r-bioc-go.db r-cran-runit r-bioc-graph r-cran-knitr r-bioc-xvector r-bioc-genomicranges r-bioc-genomicfeatures r-bioc-genomicalignments r-bioc-shortread r-cran-data.table r-cran-rmysql r-cran-getopt r-cran-testthat r-cran-inline r-cran-dbitest libglib2.0-bin Recommended packages: curl | wget | lynx-cur bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libpng-tools libltdl-dev libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7 groff-base icu-devtools intltool intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu59 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db mime-support netbase perl-openssl-defaults pkg-config po-debconf python python-minimal python-pkg-resources python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors r-cran-bitops r-cran-dbi r-cran-digest r-cran-lattice r-cran-littler r-cran-matrix r-cran-memoise r-cran-pkgkitten r-cran-rcpp r-cran-rcurl r-cran-rsqlite r-cran-survival r-cran-xml r-cran-xtable sbuild-build-depends-r-bioc-genefilter-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 161 newly installed, 1 to remove and 0 not upgraded. Need to get 102 MB of archives. After this operation, 321 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hFiFXZ/apt_archive ./ sbuild-build-depends-r-bioc-genefilter-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxau6 ppc64el 1:1.0.8-1 [7460 B] Get:3 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libbsd0 ppc64el 0.8.6-2 [50.1 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxdmcp6 ppc64el 1:1.1.2-3 [11.0 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb1 ppc64el 1.12-1ubuntu1 [43.9 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-data all 2:1.6.4-3 [114 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-6 ppc64el 2:1.6.4-3 [566 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxext6 ppc64el 2:1.3.3-1 [30.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main ppc64el groff-base ppc64el 1.22.3-9 [1361 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main ppc64el bsdmainutils ppc64el 9.0.12+nmu1ubuntu1 [179 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpipeline1 ppc64el 1.4.2-1 [23.6 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main ppc64el man-db ppc64el 2.7.6.1-2 [890 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main ppc64el libexpat1 ppc64el 2.2.3-1 [76.2 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfreetype6 ppc64el 2.8-0.2ubuntu2 [385 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main ppc64el ucf all 3.0036 [52.9 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main ppc64el fonts-dejavu-core all 2.37-1 [1041 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main ppc64el fontconfig-config all 2.12.6-0ubuntu1 [55.5 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfontconfig1 ppc64el 2.12.6-0ubuntu1 [166 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main ppc64el fontconfig ppc64el 2.12.6-0ubuntu1 [169 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg-turbo8 ppc64el 1.5.2-0ubuntu5 [146 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11-common all 1:7.7+19ubuntu3 [22.0 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main ppc64el libice6 ppc64el 2:1.0.9-2 [38.0 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsm6 ppc64el 2:1.2.2-1 [15.1 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxrender1 ppc64el 1:0.9.10-1 [17.6 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxft2 ppc64el 2.3.2-1 [39.3 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxss1 ppc64el 1:1.2.2-1 [7510 B] Get:27 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpython2.7-minimal ppc64el 2.7.14-2ubuntu2 [338 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main ppc64el python2.7-minimal ppc64el 2.7.14-2ubuntu2 [1439 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main ppc64el python-minimal ppc64el 2.7.14-2ubuntu1 [28.1 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main ppc64el mime-support all 3.60ubuntu1 [30.1 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpython2.7-stdlib ppc64el 2.7.14-2ubuntu2 [2007 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main ppc64el python2.7 ppc64el 2.7.14-2ubuntu2 [233 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpython-stdlib ppc64el 2.7.14-2ubuntu1 [7576 B] Get:34 http://ftpmaster.internal/ubuntu bionic/main ppc64el python ppc64el 2.7.14-2ubuntu1 [140 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjbig0 ppc64el 2.1-3.1 [26.4 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmagic-mgc ppc64el 1:5.32-1 [184 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmagic1 ppc64el 1:5.32-1 [76.6 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main ppc64el file ppc64el 1:5.32-1 [22.7 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglib2.0-0 ppc64el 2.54.1-1ubuntu1 [1160 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main ppc64el libicu59 ppc64el 59.1-3ubuntu1 [8110 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-5ubuntu1 [621 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main ppc64el netbase all 5.4 [12.7 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main ppc64el gettext-base ppc64el 0.19.8.1-4ubuntu1 [49.5 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxmuu1 ppc64el 2:1.1.2-2 [9642 B] Get:45 http://ftpmaster.internal/ubuntu bionic/main ppc64el xauth ppc64el 1:1.0.9-1ubuntu2 [21.5 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsigsegv2 ppc64el 2.11-1 [13.3 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main ppc64el m4 ppc64el 1.4.18-1 [202 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main ppc64el autoconf all 2.69-11 [322 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main ppc64el autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main ppc64el automake all 1:1.15.1-3ubuntu1 [509 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main ppc64el autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtool all 2.4.6-2 [194 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-autoreconf all 14 [15.5 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main ppc64el libarchive-zip-perl all 1.59-1 [84.0 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfile-stripnondeterminism-perl all 0.039-1 [13.8 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtimedate-perl all 2.3000-2 [37.5 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-strip-nondeterminism all 0.039-1 [5192 B] Get:58 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcroco3 ppc64el 0.6.12-1 [74.4 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main ppc64el gettext ppc64el 0.19.8.1-4ubuntu1 [1142 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main ppc64el po-debconf all 1.0.20 [232 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main ppc64el debhelper all 10.10.5ubuntu1 [876 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main ppc64el liburi-perl all 1.72-1 [76.6 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main ppc64el libencode-locale-perl all 1.05-1 [12.3 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhttp-date-perl all 6.02-1 [10.4 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfile-listing-perl all 6.04-1 [9774 B] Get:67 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhtml-tagset-perl all 3.20-3 [12.1 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhtml-parser-perl ppc64el 3.72-3build1 [90.9 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhtml-tree-perl all 5.03-2 [197 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main ppc64el libio-html-perl all 1.001-1 [14.9 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhttp-message-perl all 6.11-1 [74.3 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhttp-cookies-perl all 6.01-1 [17.2 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main ppc64el perl-openssl-defaults ppc64el 3 [6816 B] Get:76 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnet-ssleay-perl ppc64el 1.80-1build1 [252 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main ppc64el libio-socket-ssl-perl all 2.050-1 [168 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnet-http-perl all 6.16-1 [22.6 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblwp-protocol-https-perl all 6.07-2 [8284 B] Get:80 http://ftpmaster.internal/ubuntu bionic/main ppc64el libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main ppc64el libwww-perl all 6.15-2 [135 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxml-parser-perl ppc64el 2.44-2build3 [197 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main ppc64el intltool all 0.51.0-4 [44.3 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-translations all 131 [22.3 kB] Get:85 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el python-six all 1.11.0-1 [11.1 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main ppc64el python-pkg-resources all 36.2.7-2 [128 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main ppc64el python-scour all 0.32-2 [42.8 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main ppc64el cdbs all 0.4.151ubuntu2 [45.4 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main ppc64el dctrl-tools ppc64el 2.24-2build1 [58.3 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main ppc64el zip ppc64el 3.0-11build1 [170 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main ppc64el unzip ppc64el 6.0-21ubuntu1 [169 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpaper1 ppc64el 1.1.24+nmu5ubuntu1 [13.4 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpaper-utils ppc64el 1.1.24+nmu5ubuntu1 [8368 B] Get:94 http://ftpmaster.internal/ubuntu bionic/main ppc64el xdg-utils all 1.1.1-1ubuntu3 [59.4 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main ppc64el libblas3 ppc64el 3.7.1-3ubuntu2 [96.0 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpixman-1-0 ppc64el 0.34.0-1 [201 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-render0 ppc64el 1.12-1ubuntu1 [13.4 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-shm0 ppc64el 1.12-1ubuntu1 [5494 B] Get:99 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcairo2 ppc64el 1.15.8-2 [670 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcurl3 ppc64el 7.55.1-1ubuntu2.1 [198 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:102 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgfortran4 ppc64el 7.2.0-12ubuntu1 [293 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblapack3 ppc64el 3.7.1-3ubuntu2 [1495 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main ppc64el libthai-data all 0.1.26-3 [132 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdatrie1 ppc64el 0.2.10-5 [17.0 kB] Get:106 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libthai0 ppc64el 0.1.27-1 [17.9 kB] Get:107 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libpango-1.0-0 ppc64el 1.40.13-1 [163 kB] Get:108 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libgraphite2-3 ppc64el 1.3.10-6 [66.6 kB] Get:109 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libharfbuzz0b ppc64el 1.6.2-1 [227 kB] Get:110 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libpangoft2-1.0-0 ppc64el 1.40.13-1 [34.4 kB] Get:111 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libpangocairo-1.0-0 ppc64el 1.40.13-1 [21.0 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtcl8.6 ppc64el 8.6.7+dfsg-1 [923 kB] Get:113 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtiff5 ppc64el 4.0.8-6 [165 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtk8.6 ppc64el 8.6.7-1ubuntu1 [719 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxt6 ppc64el 1:1.1.5-1 [152 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-base-core ppc64el 3.4.2-1ubuntu2 [23.3 MB] Get:117 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgfortran-7-dev ppc64el 7.2.0-12ubuntu1 [347 kB] Get:118 http://ftpmaster.internal/ubuntu bionic/main ppc64el gfortran-7 ppc64el 7.2.0-12ubuntu1 [6644 kB] Get:119 http://ftpmaster.internal/ubuntu bionic/main ppc64el gfortran ppc64el 4:7.2.0-1ubuntu1 [1274 B] Get:120 http://ftpmaster.internal/ubuntu bionic/main ppc64el libblas-dev ppc64el 3.7.1-3ubuntu2 [99.7 kB] Get:121 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblapack-dev ppc64el 3.7.1-3ubuntu2 [1540 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtinfo-dev ppc64el 6.0+20160625-1ubuntu1 [89.1 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main ppc64el libncurses5-dev ppc64el 6.0+20160625-1ubuntu1 [195 kB] Get:124 http://ftpmaster.internal/ubuntu bionic/main ppc64el libreadline-dev ppc64el 7.0-0ubuntu2 [163 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg-turbo8-dev ppc64el 1.5.2-0ubuntu5 [266 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu8 [1606 B] Get:127 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu8 [1602 B] Get:128 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre16-3 ppc64el 2:8.39-5ubuntu3 [145 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre32-3 ppc64el 2:8.39-5ubuntu3 [135 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcrecpp0v5 ppc64el 2:8.39-5ubuntu3 [16.5 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre3-dev ppc64el 2:8.39-5ubuntu3 [518 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-0ubuntu2 [178 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpng-dev ppc64el 1.6.34-1 [219 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main ppc64el libbz2-dev ppc64el 1.0.6-8.1 [40.9 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblzma-dev ppc64el 5.2.2-1.3 [157 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main ppc64el icu-devtools ppc64el 59.1-3ubuntu1 [201 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main ppc64el libicu-dev ppc64el 59.1-3ubuntu1 [9287 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main ppc64el pkg-config ppc64el 0.29.1-0ubuntu2 [44.1 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-base-dev all 3.4.2-1ubuntu2 [4456 B] Get:140 http://ftpmaster.internal/ubuntu bionic/universe ppc64el dh-r all 20161219 [8828 B] Get:141 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-littler ppc64el 0.3.2-1 [53.5 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/universe ppc64el littler all 0.3.2-1 [2740 B] Get:143 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-bioc-biocgenerics all 0.22.1-1ubuntu1 [563 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-bioc-biobase ppc64el 2.36.2-1build1 [2028 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-bioc-s4vectors ppc64el 0.14.7-1 [1180 kB] Get:146 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-bioc-iranges ppc64el 2.10.5-1 [1450 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-dbi ppc64el 0.7-1build1 [662 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-digest ppc64el 0.6.12-1build1 [111 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-memoise all 1.0.0-1build1 [24.8 kB] Get:150 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-pkgkitten all 0.1.4-1build1 [18.1 kB] Get:151 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-rcpp ppc64el 0.12.12-1build1 [2177 kB] Get:152 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-rsqlite ppc64el 1.1-2-1build1 [841 kB] Get:153 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-bioc-annotationdbi all 1.36.1-2build1 [4240 kB] Get:154 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-xml ppc64el 3.98-1.9-1build1 [1654 kB] Get:155 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-xtable all 1:1.8-2-1build1 [694 kB] Get:156 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-bitops ppc64el 1.0-6-1build1 [22.1 kB] Get:157 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-rcurl ppc64el 1.95-4.8-2build1 [619 kB] Get:158 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-bioc-annotate ppc64el 1.52.1+dfsg-1build1 [1941 kB] Get:159 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-lattice ppc64el 0.20-35-1build1 [711 kB] Get:160 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-matrix ppc64el 1.2-11-1build1 [2379 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/universe ppc64el r-cran-survival ppc64el 2.41-3-2build1 [5168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 102 MB in 1s (55.4 MB/s) (Reading database ... 12543 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package libxau6:ppc64el. (Reading database ... 12534 files and directories currently installed.) Preparing to unpack .../00-libxau6_1%3a1.0.8-1_ppc64el.deb ... Unpacking libxau6:ppc64el (1:1.0.8-1) ... Selecting previously unselected package libbsd0:ppc64el. Preparing to unpack .../01-libbsd0_0.8.6-2_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.8.6-2) ... Selecting previously unselected package libxdmcp6:ppc64el. Preparing to unpack .../02-libxdmcp6_1%3a1.1.2-3_ppc64el.deb ... Unpacking libxdmcp6:ppc64el (1:1.1.2-3) ... Selecting previously unselected package libxcb1:ppc64el. Preparing to unpack .../03-libxcb1_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb1:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../04-libx11-data_2%3a1.6.4-3_all.deb ... Unpacking libx11-data (2:1.6.4-3) ... Selecting previously unselected package libx11-6:ppc64el. 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Unpacking r-cran-digest (0.6.12-1build1) ... Selecting previously unselected package r-cran-memoise. Preparing to unpack .../115-r-cran-memoise_1.0.0-1build1_all.deb ... Unpacking r-cran-memoise (1.0.0-1build1) ... Selecting previously unselected package r-cran-pkgkitten. Preparing to unpack .../116-r-cran-pkgkitten_0.1.4-1build1_all.deb ... Unpacking r-cran-pkgkitten (0.1.4-1build1) ... Selecting previously unselected package r-cran-rcpp. Preparing to unpack .../117-r-cran-rcpp_0.12.12-1build1_ppc64el.deb ... Unpacking r-cran-rcpp (0.12.12-1build1) ... Selecting previously unselected package r-cran-rsqlite. Preparing to unpack .../118-r-cran-rsqlite_1.1-2-1build1_ppc64el.deb ... Unpacking r-cran-rsqlite (1.1-2-1build1) ... Selecting previously unselected package r-bioc-annotationdbi. Preparing to unpack .../119-r-bioc-annotationdbi_1.36.1-2build1_all.deb ... Unpacking r-bioc-annotationdbi (1.36.1-2build1) ... Selecting previously unselected package r-cran-xml. 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Unpacking r-cran-lattice (0.20-35-1build1) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../126-r-cran-matrix_1.2-11-1build1_ppc64el.deb ... Unpacking r-cran-matrix (1.2-11-1build1) ... Selecting previously unselected package r-cran-survival. Preparing to unpack .../127-r-cran-survival_2.41-3-2build1_ppc64el.deb ... Unpacking r-cran-survival (2.41-3-2build1) ... Selecting previously unselected package sbuild-build-depends-r-bioc-genefilter-dummy. Preparing to unpack .../128-sbuild-build-depends-r-bioc-genefilter-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-r-bioc-genefilter-dummy (0.invalid.0) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libexpat1:ppc64el (2.2.3-1) ... Setting up libbz2-dev:ppc64el (1.0.6-8.1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libgfortran4:ppc64el (7.2.0-12ubuntu1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libjbig0:ppc64el (2.1-3.1) ... Setting up libsigsegv2:ppc64el (2.11-1) ... Setting up libcurl3:ppc64el (7.55.1-1ubuntu2.1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up perl-openssl-defaults:ppc64el (3) ... Setting up libicu59:ppc64el (59.1-3ubuntu1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:ppc64el (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up libio-html-perl (1.001-1) ... Setting up unzip (6.0-21ubuntu1) ... Setting up libtinfo-dev:ppc64el (6.0+20160625-1ubuntu1) ... Setting up dctrl-tools (2.24-2build1) ... Setting up libdatrie1:ppc64el (0.2.10-5) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libjpeg-turbo8:ppc64el (1.5.2-0ubuntu5) ... Setting up libpipeline1:ppc64el (1.4.2-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:ppc64el (0.8.6-2) ... Setting up ucf (3.0036) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-5ubuntu1) ... Setting up zip (3.0-11build1) ... Setting up libfreetype6:ppc64el (2.8-0.2ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:ppc64el (1:5.32-1) ... Setting up libgraphite2-3:ppc64el (1.3.10-6) ... Setting up libcroco3:ppc64el (0.6.12-1) ... Setting up libncurses5-dev:ppc64el (6.0+20160625-1ubuntu1) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libpixman-1-0:ppc64el (0.34.0-1) ... Setting up libblas3:ppc64el (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libjpeg-turbo8-dev:ppc64el (1.5.2-0ubuntu5) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up liburi-perl (1.72-1) ... Processing triggers for systemd (235-2ubuntu1) ... Setting up libhtml-parser-perl (3.72-3build1) ... Setting up libgfortran-7-dev:ppc64el (7.2.0-12ubuntu1) ... Setting up libreadline-dev:ppc64el (7.0-0ubuntu2) ... Setting up gfortran-7 (7.2.0-12ubuntu1) ... Setting up libpcrecpp0v5:ppc64el (2:8.39-5ubuntu3) ... Setting up libpcre32-3:ppc64el (2:8.39-5ubuntu3) ... Setting up libnet-http-perl (6.16-1) ... Setting up icu-devtools (59.1-3ubuntu1) ... Setting up libpcre16-3:ppc64el (2:8.39-5ubuntu3) ... Setting up libtcl8.6:ppc64el (8.6.7+dfsg-1) ... Setting up libthai-data (0.1.26-3) ... Setting up liblzma-dev:ppc64el (5.2.2-1.3) ... Setting up libxdmcp6:ppc64el (1:1.1.2-3) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1ubuntu3) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:ppc64el (2.7.14-2ubuntu2) ... Setting up libxau6:ppc64el (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up netbase (5.4) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.039-1) ... Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up libpaper1:ppc64el (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up gfortran (4:7.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up libpcre3-dev:ppc64el (2:8.39-5ubuntu3) ... Setting up fontconfig-config (2.12.6-0ubuntu1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libblas-dev:ppc64el (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up libnet-ssleay-perl (1.80-1build1) ... Setting up liblapack3:ppc64el (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up python2.7 (2.7.14-2ubuntu2) ... Setting up libharfbuzz0b:ppc64el (1.6.2-1) ... Setting up libtiff5:ppc64el (4.0.8-6) ... Setting up autoconf (2.69-11) ... Setting up libthai0:ppc64el (0.1.27-1) ... Setting up libicu-dev (59.1-3ubuntu1) ... Setting up file (1:5.32-1) ... Setting up libio-socket-ssl-perl (2.050-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libpython-stdlib:ppc64el (2.7.14-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:ppc64el (8c-2ubuntu8) ... Setting up libjpeg-dev:ppc64el (8c-2ubuntu8) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:ppc64el (2:1.0.9-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhttp-message-perl (6.11-1) ... Setting up libpng-dev:ppc64el (1.6.34-1) ... Setting up libxcb1:ppc64el (1.12-1ubuntu1) ... Setting up python (2.7.14-2ubuntu1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up liblapack-dev:ppc64el (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up libtool (2.4.6-2) ... Setting up libfontconfig1:ppc64el (2.12.6-0ubuntu1) ... Setting up libsm6:ppc64el (2:1.2.2-1) ... Setting up libxcb-render0:ppc64el (1.12-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libx11-6:ppc64el (2:1.6.4-3) ... Setting up python-pkg-resources (36.2.7-2) ... Setting up libxmuu1:ppc64el (2:1.1.2-2) ... Setting up python-six (1.11.0-1) ... Setting up python-scour (0.32-2) ... Setting up libxcb-shm0:ppc64el (1.12-1ubuntu1) ... Setting up libxt6:ppc64el (1:1.1.5-1) ... Setting up libxrender1:ppc64el (1:0.9.10-1) ... Setting up libxft2:ppc64el (2.3.2-1) ... Setting up fontconfig (2.12.6-0ubuntu1) ... Regenerating fonts cache... done. Setting up libxext6:ppc64el (2:1.3.3-1) ... Setting up libxss1:ppc64el (1:1.2.2-1) ... Setting up xauth (1:1.0.9-1ubuntu2) ... Setting up libpango-1.0-0:ppc64el (1.40.13-1) ... Setting up libcairo2:ppc64el (1.15.8-2) ... Setting up libtk8.6:ppc64el (8.6.7-1ubuntu1) ... Setting up libpangoft2-1.0-0:ppc64el (1.40.13-1) ... Setting up libpangocairo-1.0-0:ppc64el (1.40.13-1) ... Setting up r-base-core (3.4.2-1ubuntu2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-littler (0.3.2-1) ... Setting up littler (0.3.2-1) ... Setting up r-bioc-biocgenerics (0.22.1-1ubuntu1) ... Setting up r-bioc-biobase (2.36.2-1build1) ... Setting up r-cran-bitops (1.0-6-1build1) ... Setting up r-cran-dbi (0.7-1build1) ... Setting up r-cran-pkgkitten (0.1.4-1build1) ... Setting up r-cran-rcpp (0.12.12-1build1) ... Setting up r-cran-rcurl (1.95-4.8-2build1) ... Setting up r-cran-digest (0.6.12-1build1) ... Setting up r-cran-xtable (1:1.8-2-1build1) ... Setting up r-cran-memoise (1.0.0-1build1) ... Setting up r-bioc-s4vectors (0.14.7-1) ... Setting up r-cran-xml (3.98-1.9-1build1) ... Setting up r-cran-lattice (0.20-35-1build1) ... Setting up r-cran-rsqlite (1.1-2-1build1) ... Setting up r-bioc-iranges (2.10.5-1) ... Setting up r-cran-matrix (1.2-11-1build1) ... Setting up r-bioc-annotationdbi (1.36.1-2build1) ... Setting up r-cran-survival (2.41-3-2build1) ... Setting up r-bioc-annotate (1.52.1+dfsg-1build1) ... Setting up dh-strip-nondeterminism (0.039-1) ... Setting up libwww-perl (6.15-2) ... Setting up dh-autoreconf (14) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libxml-parser-perl (2.44-2build3) ... Setting up debhelper (10.10.5ubuntu1) ... Setting up intltool (0.51.0-4) ... Setting up dh-translations (131) ... Setting up cdbs (0.4.151ubuntu2) ... Setting up r-base-dev (3.4.2-1ubuntu2) ... Setting up dh-r (20161219) ... Setting up sbuild-build-depends-r-bioc-genefilter-dummy (0.invalid.0) ... (Reading database ... 20927 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Processing triggers for systemd (235-2ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-97-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.29.1-6ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-12ubuntu1 gcc-7_7.2.0-12ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha3 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-6ubuntu1 binutils-common_2.29.1-6ubuntu1 binutils-powerpc64le-linux-gnu_2.29.1-6ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 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policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.14-2ubuntu1 python-minimal_2.7.14-2ubuntu1 python-pkg-resources_36.2.7-2 python-scour_0.32-2 python-six_1.11.0-1 python2.7_2.7.14-2ubuntu2 python2.7-minimal_2.7.14-2ubuntu2 r-base-core_3.4.2-1ubuntu2 r-base-dev_3.4.2-1ubuntu2 r-bioc-annotate_1.52.1+dfsg-1build1 r-bioc-annotationdbi_1.36.1-2build1 r-bioc-biobase_2.36.2-1build1 r-bioc-biocgenerics_0.22.1-1ubuntu1 r-bioc-iranges_2.10.5-1 r-bioc-s4vectors_0.14.7-1 r-cran-bitops_1.0-6-1build1 r-cran-dbi_0.7-1build1 r-cran-digest_0.6.12-1build1 r-cran-lattice_0.20-35-1build1 r-cran-littler_0.3.2-1 r-cran-matrix_1.2-11-1build1 r-cran-memoise_1.0.0-1build1 r-cran-pkgkitten_0.1.4-1build1 r-cran-rcpp_0.12.12-1build1 r-cran-rcurl_1.95-4.8-2build1 r-cran-rsqlite_1.1-2-1build1 r-cran-survival_2.41-3-2build1 r-cran-xml_3.98-1.9-1build1 r-cran-xtable_1:1.8-2-1build1 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-genefilter-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_235-2ubuntu1 systemd-sysv_235-2ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 ucf_3.0036 unzip_6.0-21ubuntu1 util-linux_2.30.1-0ubuntu4 x11-common_1:7.7+19ubuntu3 xauth_1:1.0.9-1ubuntu2 xdg-utils_1.1.1-1ubuntu3 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Oct 2 13:34:51 2017 UTC gpgv: using RSA key gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-genefilter_1.58.1-2.dsc dpkg-source: info: extracting r-bioc-genefilter in r-bioc-genefilter-1.58.1 dpkg-source: info: unpacking r-bioc-genefilter_1.58.1.orig.tar.gz dpkg-source: info: unpacking r-bioc-genefilter_1.58.1-2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13661627 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13661627 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13661627 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-genefilter dpkg-buildpackage: info: source version 1.58.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build r-bioc-genefilter-1.58.1 dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean --buildsystem R dh_testdir -O--buildsystem=R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_testdir -a -O--buildsystem=R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_installdirs -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R Package: genefilter Version: 1.58.1 I: Building using R version 3.4.2-1ubuntu2 I: R API version: r-api-3.4 I: Using built-time from d/changelog: Mon, 02 Oct 2017 15:30:14 +0200 mkdir -p /<>/debian/r-bioc-genefilter/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-genefilter/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 02 Oct 2017 15:30:14 +0200'" * installing *source* package ‘genefilter’ ... ** libs make[1]: Entering directory '/<>/src' g++ -I/usr/share/R/include -DNDEBUG -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dAjtWj/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c half_range_mode.cpp -o half_range_mode.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dAjtWj/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dAjtWj/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nd.c -o nd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dAjtWj/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pAUC.c -o pAUC.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dAjtWj/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowPAUCs.c -o rowPAUCs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dAjtWj/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowttests.c -o rowttests.o gfortran -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dAjtWj/r-base-3.4.2=. -fstack-protector-strong -c ttest.f -o ttest.o g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -lm -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-genefilter/usr/lib/R/site-library/genefilter/libs ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (genefilter) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294. I: Using r-cran-class for Suggests:class W: Cannot find a debian package for Suggests:hgu95av2.db W: Cannot find a debian package for Suggests:tkWidgets W: Cannot find a debian package for Suggests:ALL W: Cannot find a debian package for Suggests:ROC W: Cannot find a debian package for Suggests:DESeq W: Cannot find a debian package for Suggests:pasilla W: Cannot find a debian package for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.42) I: Using r-bioc-annotationdbi for Imports:AnnotationDbi I: Using r-bioc-annotate for Imports:annotate I: Using r-bioc-biobase for Imports:Biobase I: Using r-cran-survival for Imports:survival dh_install -a -O--buildsystem=R dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installexamples -a -O--buildsystem=R dh_installman -a -O--buildsystem=R dh_installcatalogs -a -O--buildsystem=R dh_installcron -a -O--buildsystem=R dh_installdebconf -a -O--buildsystem=R dh_installemacsen -a -O--buildsystem=R dh_installifupdown -a -O--buildsystem=R dh_installinfo -a -O--buildsystem=R dh_systemd_enable -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_systemd_start -a -O--buildsystem=R dh_installmenu -a -O--buildsystem=R dh_installmime -a -O--buildsystem=R dh_installmodules -a -O--buildsystem=R dh_installlogcheck -a -O--buildsystem=R dh_installlogrotate -a -O--buildsystem=R dh_installpam -a -O--buildsystem=R dh_installppp -a -O--buildsystem=R dh_installudev -a -O--buildsystem=R dh_installgsettings -a -O--buildsystem=R dh_bugfiles -a -O--buildsystem=R dh_ucf -a -O--buildsystem=R dh_lintian -a -O--buildsystem=R dh_gconf -a -O--buildsystem=R dh_icons -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_usrlocal -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_installwm -a -O--buildsystem=R dh_installxfonts -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing r-bioc-genefilter-dbgsym (in debian/.debhelper/r-bioc-genefilter/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-genefilter (in debian/r-bioc-genefilter); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-genefilter/dbgsym-root/DEBIAN/control, package r-bioc-genefilter-dbgsym, directory debian/.debhelper/r-bioc-genefilter/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-genefilter-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-genefilter-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-genefilter/r-bioc-genefilter-dbgsym_1.58.1-2_ppc64el.deb'. Renaming r-bioc-genefilter-dbgsym_1.58.1-2_ppc64el.deb to r-bioc-genefilter-dbgsym_1.58.1-2_ppc64el.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-genefilter/DEBIAN/control, package r-bioc-genefilter, directory debian/r-bioc-genefilter pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-genefilter ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-genefilter' in '../r-bioc-genefilter_1.58.1-2_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-genefilter_1.58.1-2_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-bioc-genefilter-1.58.1 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171101-1622 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-genefilter_1.58.1-2_ppc64el.changes: ------------------------------------------- Format: 1.8 Date: Mon, 02 Oct 2017 15:30:14 +0200 Source: r-bioc-genefilter Binary: r-bioc-genefilter Architecture: ppc64el Version: 1.58.1-2 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-genefilter - methods for filtering genes from microarray experiments Changes: r-bioc-genefilter (1.58.1-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 Checksums-Sha1: 1307b5a7d39b55721a10fcbf32c2a588dd650a1a 45304 r-bioc-genefilter-dbgsym_1.58.1-2_ppc64el.ddeb 38f43866493c6a08ec8a5c14bdc39ce5b1fd2b9f 10427 r-bioc-genefilter_1.58.1-2_ppc64el.buildinfo 6d26c995889fed3a1d4006acab0595ef761066d9 1581548 r-bioc-genefilter_1.58.1-2_ppc64el.deb Checksums-Sha256: 553c506035457684bfb2214129e8536d85fa0ab2ed921c9a3c3829f2735466ea 45304 r-bioc-genefilter-dbgsym_1.58.1-2_ppc64el.ddeb 5238f3eaf195959ba3df66fb704ca04c479bbd88933df1f02f717892f6e8516f 10427 r-bioc-genefilter_1.58.1-2_ppc64el.buildinfo 35f1e1bd88df2ae4b1e46ae3a2022711e537b31bf99b7378ded996092e23b7c0 1581548 r-bioc-genefilter_1.58.1-2_ppc64el.deb Files: 701d4fa74d17207ddb69e128e6962681 45304 debug optional r-bioc-genefilter-dbgsym_1.58.1-2_ppc64el.ddeb 19ec56997c88ee11f74f6dce374c7cfd 10427 gnu-r optional r-bioc-genefilter_1.58.1-2_ppc64el.buildinfo a701a1032d663ff67b5d87c9b94ea3dc 1581548 gnu-r optional r-bioc-genefilter_1.58.1-2_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-genefilter_1.58.1-2_ppc64el.deb -------------------------------------- new debian package, version 2.0. size 1581548 bytes: control archive=2164 bytes. 810 bytes, 14 lines control 4765 bytes, 54 lines md5sums Package: r-bioc-genefilter Version: 1.58.1-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1835 Depends: r-base-core (>= 3.4.2-1ubuntu2), r-api-3.4, r-bioc-s4vectors (>= 0.9.42), r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biobase, r-cran-survival, libc6 (>= 2.17), libgcc1 (>= 1:3.0), libstdc++6 (>= 4.1.1) Suggests: r-cran-class, r-cran-knitr Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/genefilter/ Description: methods for filtering genes from microarray experiments This BioConductor module provides methods for filtering genes from microarray experiments. It contains some basic functions for filtering genes. drwxr-xr-x root/root 0 2017-10-02 13:30 ./ drwxr-xr-x root/root 0 2017-10-02 13:30 ./usr/ drwxr-xr-x root/root 0 2017-10-02 13:30 ./usr/lib/ drwxr-xr-x root/root 0 2017-10-02 13:30 ./usr/lib/R/ drwxr-xr-x root/root 0 2017-10-02 13:30 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2017-10-02 13:30 ./usr/lib/R/site-library/genefilter/ -rw-r--r-- root/root 1030 2017-10-02 13:30 ./usr/lib/R/site-library/genefilter/DESCRIPTION -rw-r--r-- root/root 2291 2017-10-02 13:30 ./usr/lib/R/site-library/genefilter/INDEX drwxr-xr-x root/root 0 2017-10-02 13:30 ./usr/lib/R/site-library/genefilter/Meta/ -rw-r--r-- root/root 1672 2017-10-02 13:30 ./usr/lib/R/site-library/genefilter/Meta/Rd.rds -rw-r--r-- root/root 119 2017-10-02 13:30 ./usr/lib/R/site-library/genefilter/Meta/data.rds -rw-r--r-- root/root 112 2017-10-02 13:30 ./usr/lib/R/site-library/genefilter/Meta/features.rds -rw-r--r-- root/root 1645 2017-10-02 13:30 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 5760 Build-Time: 21 Distribution: bionic-proposed Host Architecture: ppc64el Install-Time: 27 Job: r-bioc-genefilter_1.58.1-2.dsc Machine Architecture: ppc64el Package: r-bioc-genefilter Package-Time: 49 Source-Version: 1.58.1-2 Space: 5760 Status: successful Version: 1.58.1-2 -------------------------------------------------------------------------------- Finished at 20171101-1622 Build needed 00:00:49, 5760k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13661627 Scanning for processes to kill in build PACKAGEBUILD-13661627 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13661627 Stopping target for build PACKAGEBUILD-13661627 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13661627 Removing build PACKAGEBUILD-13661627