RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-018 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:11 UTC 2017 ppc64le Buildd toolchain package versions: launchpad-buildd_157 python-lpbuildd_157 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.3 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 30 Nov 22:51:49 ntpdate[1808]: adjust time server 10.211.37.1 offset -0.000287 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13798102 /home/buildd/filecache-default/64ab4a3b1843816d631a3747c16f42fa2d8de59d Creating target for build PACKAGEBUILD-13798102 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13798102 Starting target for build PACKAGEBUILD-13798102 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13798102 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13798102 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13798102 Updating target for build PACKAGEBUILD-13798102 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el Packages [1002 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [534 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe ppc64el Packages [8003 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4875 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el Packages [49.5 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [24.3 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el Packages [121 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [73.1 kB] Fetched 15.1 MB in 4s (3065 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: liblsan0 libtsan0 The following packages will be upgraded: apt apt-transport-https base-files base-passwd binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils build-essential coreutils cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcomerr2 libcurl3-gnutls libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libhogweed4 libidn2-0 libip4tc0 libitm1 libkeyutils1 libmount1 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libuuid1 linux-libc-dev mount multiarch-support openssl optipng perl perl-base perl-modules-5.26 pinentry-curses sensible-utils systemd systemd-sysv sysvinit-utils tzdata util-linux 92 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 58.7 MB of archives. After this operation, 8948 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main ppc64el base-files ppc64el 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main ppc64el bsdutils ppc64el 1:2.30.2-0.1ubuntu1 [61.8 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main ppc64el coreutils ppc64el 8.26-3ubuntu4 [1251 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main ppc64el debianutils ppc64el 4.8.3 [86.0 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el dpkg ppc64el 1.19.0.4ubuntu1 [1149 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc6-dev ppc64el 2.26-0ubuntu2 [2458 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc-dev-bin ppc64el 2.26-0ubuntu2 [65.4 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main ppc64el linux-libc-dev ppc64el 4.13.0-17.20 [955 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgomp1 ppc64el 7.2.0-16ubuntu1 [69.2 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main ppc64el libitm1 ppc64el 7.2.0-16ubuntu1 [29.8 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main ppc64el gcc-7-base ppc64el 7.2.0-16ubuntu1 [18.5 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcc1 ppc64el 1:7.2.0-16ubuntu1 [29.8 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main ppc64el libatomic1 ppc64el 7.2.0-16ubuntu1 [8560 B] Get:14 http://ftpmaster.internal/ubuntu bionic/main ppc64el libasan4 ppc64el 7.2.0-16ubuntu1 [367 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblsan0 ppc64el 7.2.0-16ubuntu1 [134 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtsan0 ppc64el 7.2.0-16ubuntu1 [287 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main ppc64el libubsan0 ppc64el 7.2.0-16ubuntu1 [136 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main ppc64el cpp-7 ppc64el 7.2.0-16ubuntu1 [6263 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcc1-0 ppc64el 7.2.0-16ubuntu1 [39.3 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main ppc64el g++-7 ppc64el 7.2.0-16ubuntu1 [7103 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main ppc64el gcc-7 ppc64el 7.2.0-16ubuntu1 [6898 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcc-7-dev ppc64el 7.2.0-16ubuntu1 [987 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main ppc64el libstdc++-7-dev ppc64el 7.2.0-16ubuntu1 [1524 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main ppc64el libstdc++6 ppc64el 7.2.0-16ubuntu1 [441 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libgmp10 ppc64el 2:6.1.2+dfsg-1.1 [218 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libbinutils ppc64el 2.29.1-9ubuntu1 [458 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el binutils ppc64el 2.29.1-9ubuntu1 [3412 B] Get:28 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el binutils-common ppc64el 2.29.1-9ubuntu1 [190 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.29.1-9ubuntu1 [1972 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc6 ppc64el 2.26-0ubuntu2 [2619 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main ppc64el e2fslibs ppc64el 1.43.7-1 [173 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main ppc64el e2fsprogs ppc64el 1.43.7-1 [510 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main ppc64el findutils ppc64el 4.6.0+git+20170828-2 [314 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el perl-modules-5.26 all 5.26.1-3 [2761 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libperl5.26 ppc64el 5.26.1-3 [3399 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el perl ppc64el 5.26.1-3 [201 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el perl-base ppc64el 5.26.1-3 [1304 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main ppc64el libuuid1 ppc64el 2.30.2-0.1ubuntu1 [15.5 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main ppc64el libblkid1 ppc64el 2.30.2-0.1ubuntu1 [128 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsmartcols1 ppc64el 2.30.2-0.1ubuntu1 [84.7 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfdisk1 ppc64el 2.30.2-0.1ubuntu1 [160 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre3 ppc64el 2:8.39-5ubuntu3 [224 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main ppc64el libselinux1 ppc64el 2.7-2 [78.6 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmount1 ppc64el 2.30.2-0.1ubuntu1 [139 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main ppc64el fdisk ppc64el 2.30.2-0.1ubuntu1 [108 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main ppc64el util-linux ppc64el 2.30.2-0.1ubuntu1 [881 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main ppc64el base-passwd ppc64el 3.5.44 [50.1 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc-bin ppc64el 2.26-0ubuntu2 [573 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main ppc64el sysvinit-utils ppc64el 2.88dsf-59.10ubuntu1 [20.6 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main ppc64el libudev1 ppc64el 235-3ubuntu2 [60.8 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main ppc64el libapt-pkg5.0 ppc64el 1.6~alpha5 [878 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgpg-error0 ppc64el 1.27-5 [42.1 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcrypt20 ppc64el 1.8.1-4 [448 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpgv ppc64el 2.1.15-1ubuntu8 [218 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main ppc64el libseccomp2 ppc64el 2.3.1-2.1ubuntu3 [47.2 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main ppc64el apt ppc64el 1.6~alpha5 [1191 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main ppc64el debconf all 1.5.65 [124 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main ppc64el libapparmor1 ppc64el 2.11.0-2ubuntu18 [29.9 kB] Get:59 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcap2 ppc64el 1:2.25-1.2 [13.5 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main ppc64el libip4tc0 ppc64el 1.6.1-2ubuntu2 [23.6 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main ppc64el mount ppc64el 2.30.2-0.1ubuntu1 [111 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main ppc64el systemd ppc64el 235-3ubuntu2 [2962 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsystemd0 ppc64el 235-3ubuntu2 [213 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main ppc64el systemd-sysv ppc64el 235-3ubuntu2 [13.1 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcap-ng0 ppc64el 0.7.7-3.1 [11.6 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcomerr2 ppc64el 1.43.7-1 [11.6 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsemanage-common all 2.7-2 [6916 B] Get:68 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsemanage1 ppc64el 2.7-2 [85.4 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main ppc64el libss2 ppc64el 1.43.7-1 [11.4 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnettle6 ppc64el 3.3-2 [120 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhogweed4 ppc64el 3.3-2 [134 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main ppc64el libp11-kit0 ppc64el 0.23.9-2 [167 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtasn1-6 ppc64el 4.12-3 [39.8 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main ppc64el sensible-utils all 0.0.11 [14.8 kB] Get:75 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libassuan0 ppc64el 2.4.4-1 [33.8 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main ppc64el pinentry-curses ppc64el 1.0.0-3 [37.5 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnpth0 ppc64el 1.5-3 [7780 B] Get:78 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg ppc64el 2.1.15-1ubuntu8 [847 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg-agent ppc64el 2.1.15-1ubuntu8 [291 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsqlite3-0 ppc64el 3.21.0-1 [464 kB] Get:81 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libssl1.0.0 ppc64el 1.0.2g-1ubuntu14 [880 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main ppc64el multiarch-support ppc64el 2.26-0ubuntu2 [6832 B] Get:83 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el openssl ppc64el 1.0.2g-1ubuntu14 [520 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main ppc64el tzdata all 2017c-1 [188 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main ppc64el libidn2-0 ppc64el 2.0.4-1 [95.7 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main ppc64el libkeyutils1 ppc64el 1.5.9-9.2ubuntu1 [9736 B] Get:87 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpng16-16 ppc64el 1.6.34-1 [200 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main ppc64el apt-transport-https all 1.6~alpha5 [1692 B] Get:89 http://ftpmaster.internal/ubuntu bionic/main ppc64el dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main ppc64el build-essential ppc64el 12.4ubuntu1 [4754 B] Get:92 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpsl5 ppc64el 0.19.1-3 [43.0 kB] Get:93 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcurl3-gnutls ppc64el 7.55.1-1ubuntu3 [197 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main ppc64el optipng ppc64el 0.7.6-1ubuntu1 [86.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.7 MB in 5s (10.0 MB/s) (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_ppc64el.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.30.2-0.1ubuntu1_ppc64el.deb ... Unpacking bsdutils (1:2.30.2-0.1ubuntu1) over (1:2.30.1-0ubuntu4) ... Setting up bsdutils (1:2.30.2-0.1ubuntu1) ... (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_ppc64el.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.3_ppc64el.deb ... Unpacking debianutils (4.8.3) over (4.8.2) ... Setting up debianutils (4.8.3) ... (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.4ubuntu1_ppc64el.deb ... Unpacking dpkg (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Setting up dpkg (1.19.0.4ubuntu1) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... Installing new version of config file /etc/logrotate.d/dpkg ... (Reading database ... 12539 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.26-0ubuntu2_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../1-libc-dev-bin_2.26-0ubuntu2_ppc64el.deb ... Unpacking libc-dev-bin (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../2-linux-libc-dev_4.13.0-17.20_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (4.13.0-17.20) over (4.13.0-11.12) ... Preparing to unpack .../3-libgomp1_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../4-libitm1_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../5-gcc-7-base_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking gcc-7-base:ppc64el (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Setting up gcc-7-base:ppc64el (7.2.0-16ubuntu1) ... (Reading database ... 12539 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libgcc1:ppc64el (1:7.2.0-16ubuntu1) over (1:7.2.0-6ubuntu1) ... Setting up libgcc1:ppc64el (1:7.2.0-16ubuntu1) ... (Reading database ... 12539 files and directories currently installed.) Preparing to unpack .../00-libatomic1_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../01-libasan4_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libasan4:ppc64el (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Selecting previously unselected package liblsan0:ppc64el. Preparing to unpack .../02-liblsan0_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking liblsan0:ppc64el (7.2.0-16ubuntu1) ... Selecting previously unselected package libtsan0:ppc64el. Preparing to unpack .../03-libtsan0_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libtsan0:ppc64el (7.2.0-16ubuntu1) ... Preparing to unpack .../04-libubsan0_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libubsan0:ppc64el (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../05-cpp-7_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking cpp-7 (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../06-libcc1-0_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libcc1-0:ppc64el (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../07-g++-7_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking g++-7 (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../08-gcc-7_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking gcc-7 (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../09-libgcc-7-dev_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libgcc-7-dev:ppc64el (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../10-libstdc++-7-dev_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libstdc++-7-dev:ppc64el (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../11-libstdc++6_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (7.2.0-16ubuntu1) over (7.2.0-6ubuntu1) ... Setting up libstdc++6:ppc64el (7.2.0-16ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-1.1_ppc64el.deb ... Unpacking libgmp10:ppc64el (2:6.1.2+dfsg-1.1) over (2:6.1.2+dfsg-1) ... Setting up libgmp10:ppc64el (2:6.1.2+dfsg-1.1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libbinutils_2.29.1-9ubuntu1_ppc64el.deb ... Unpacking libbinutils:ppc64el (2.29.1-9ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils_2.29.1-9ubuntu1_ppc64el.deb ... Unpacking binutils (2.29.1-9ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils-common_2.29.1-9ubuntu1_ppc64el.deb ... Unpacking binutils-common:ppc64el (2.29.1-9ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils-powerpc64le-linux-gnu_2.29.1-9ubuntu1_ppc64el.deb ... Unpacking binutils-powerpc64le-linux-gnu (2.29.1-9ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../libc6_2.26-0ubuntu2_ppc64el.deb ... Unpacking libc6:ppc64el (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Setting up libc6:ppc64el (2.26-0ubuntu2) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.7-1_ppc64el.deb ... Unpacking e2fslibs:ppc64el (1.43.7-1) over (1.43.5-1) ... Setting up e2fslibs:ppc64el (1.43.7-1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.7-1_ppc64el.deb ... Unpacking e2fsprogs (1.43.7-1) over (1.43.5-1) ... Setting up e2fsprogs (1.43.7-1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20170828-2_ppc64el.deb ... Unpacking findutils (4.6.0+git+20170828-2) over (4.6.0+git+20170729-2) ... Setting up findutils (4.6.0+git+20170828-2) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../perl_5.26.1-3_ppc64el.deb ... Unpacking perl (5.26.1-3) over (5.26.0-8ubuntu1) ... Preparing to unpack .../perl-modules-5.26_5.26.1-3_all.deb ... Unpacking perl-modules-5.26 (5.26.1-3) over (5.26.0-8ubuntu1) ... Preparing to unpack .../libperl5.26_5.26.1-3_ppc64el.deb ... Unpacking libperl5.26:ppc64el (5.26.1-3) over (5.26.0-8ubuntu1) ... Preparing to unpack .../perl-base_5.26.1-3_ppc64el.deb ... Unpacking perl-base (5.26.1-3) over (5.26.0-8ubuntu1) ... Setting up perl-base (5.26.1-3) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libuuid1_2.30.2-0.1ubuntu1_ppc64el.deb ... Unpacking libuuid1:ppc64el (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up libuuid1:ppc64el (2.30.2-0.1ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libblkid1_2.30.2-0.1ubuntu1_ppc64el.deb ... Unpacking libblkid1:ppc64el (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up libblkid1:ppc64el (2.30.2-0.1ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.30.2-0.1ubuntu1_ppc64el.deb ... Unpacking libsmartcols1:ppc64el (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up libsmartcols1:ppc64el (2.30.2-0.1ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.30.2-0.1ubuntu1_ppc64el.deb ... Unpacking libfdisk1:ppc64el (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up libfdisk1:ppc64el (2.30.2-0.1ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-5ubuntu3_ppc64el.deb ... Unpacking libpcre3:ppc64el (2:8.39-5ubuntu3) over (2:8.39-4) ... Setting up libpcre3:ppc64el (2:8.39-5ubuntu3) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libselinux1_2.7-2_ppc64el.deb ... Unpacking libselinux1:ppc64el (2.7-2) over (2.7-1) ... Setting up libselinux1:ppc64el (2.7-2) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libmount1_2.30.2-0.1ubuntu1_ppc64el.deb ... Unpacking libmount1:ppc64el (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up libmount1:ppc64el (2.30.2-0.1ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../fdisk_2.30.2-0.1ubuntu1_ppc64el.deb ... Unpacking fdisk (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up fdisk (2.30.2-0.1ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../util-linux_2.30.2-0.1ubuntu1_ppc64el.deb ... Unpacking util-linux (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up util-linux (2.30.2-0.1ubuntu1) ... (Reading database ... 12555 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.44_ppc64el.deb ... Unpacking base-passwd (3.5.44) over (3.5.43) ... Setting up base-passwd (3.5.44) ... (Reading database ... 12555 files and directories currently installed.) Preparing to unpack .../libc-bin_2.26-0ubuntu2_ppc64el.deb ... Unpacking libc-bin (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Setting up libc-bin (2.26-0ubuntu2) ... (Reading database ... 12555 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.10ubuntu1_ppc64el.deb ... Unpacking sysvinit-utils (2.88dsf-59.10ubuntu1) over (2.88dsf-59.8git1) ... Setting up sysvinit-utils (2.88dsf-59.10ubuntu1) ... (Reading database ... 12555 files and directories currently installed.) Preparing to unpack .../libudev1_235-3ubuntu2_ppc64el.deb ... Unpacking libudev1:ppc64el (235-3ubuntu2) over (234-2ubuntu10) ... Setting up libudev1:ppc64el (235-3ubuntu2) ... (Reading database ... 12555 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.6~alpha5_ppc64el.deb ... Unpacking libapt-pkg5.0:ppc64el (1.6~alpha5) over (1.5~rc4) ... Setting up libapt-pkg5.0:ppc64el (1.6~alpha5) ... (Reading database ... 12555 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.27-5_ppc64el.deb ... Unpacking libgpg-error0:ppc64el (1.27-5) over (1.27-3) ... Setting up libgpg-error0:ppc64el (1.27-5) ... (Reading database ... 12555 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.1-4_ppc64el.deb ... Unpacking libgcrypt20:ppc64el (1.8.1-4) over (1.7.8-2ubuntu1) ... Setting up libgcrypt20:ppc64el (1.8.1-4) ... (Reading database ... 12555 files and directories currently installed.) Preparing to unpack .../gpgv_2.1.15-1ubuntu8_ppc64el.deb ... Unpacking gpgv (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Setting up gpgv (2.1.15-1ubuntu8) ... (Reading database ... 12555 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2.1ubuntu3_ppc64el.deb ... Unpacking libseccomp2:ppc64el (2.3.1-2.1ubuntu3) over (2.3.1-2.1ubuntu2) ... Setting up libseccomp2:ppc64el (2.3.1-2.1ubuntu3) ... (Reading database ... 12555 files and directories currently installed.) Preparing to unpack .../apt_1.6~alpha5_ppc64el.deb ... Unpacking apt (1.6~alpha5) over (1.5~rc4) ... Setting up apt (1.6~alpha5) ... (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../debconf_1.5.65_all.deb ... Unpacking debconf (1.5.65) over (1.5.63) ... Setting up debconf (1.5.65) ... (Reading database ... 12545 files and directories currently installed.) Preparing to unpack .../0-libapparmor1_2.11.0-2ubuntu18_ppc64el.deb ... Unpacking libapparmor1:ppc64el (2.11.0-2ubuntu18) over (2.11.0-2ubuntu17) ... Preparing to unpack .../1-libcap2_1%3a2.25-1.2_ppc64el.deb ... Unpacking libcap2:ppc64el (1:2.25-1.2) over (1:2.25-1) ... Preparing to unpack .../2-libip4tc0_1.6.1-2ubuntu2_ppc64el.deb ... Unpacking libip4tc0:ppc64el (1.6.1-2ubuntu2) over (1.6.1-2ubuntu1) ... Preparing to unpack .../3-mount_2.30.2-0.1ubuntu1_ppc64el.deb ... Unpacking mount (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Preparing to unpack .../4-systemd_235-3ubuntu2_ppc64el.deb ... Unpacking systemd (235-3ubuntu2) over (234-2ubuntu10) ... Preparing to unpack .../5-libsystemd0_235-3ubuntu2_ppc64el.deb ... Unpacking libsystemd0:ppc64el (235-3ubuntu2) over (234-2ubuntu10) ... Setting up libsystemd0:ppc64el (235-3ubuntu2) ... Setting up libapparmor1:ppc64el (2.11.0-2ubuntu18) ... Setting up libcap2:ppc64el (1:2.25-1.2) ... Setting up libip4tc0:ppc64el (1.6.1-2ubuntu2) ... Setting up mount (2.30.2-0.1ubuntu1) ... Setting up systemd (235-3ubuntu2) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/system.conf ... Removing empty /etc/rc.local Removed /etc/systemd/system/network-online.target.wants/systemd-networkd-wait-online.service. Removing user `systemd-bus-proxy' ... Warning: group `systemd-bus-proxy' has no more members. Done. (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../systemd-sysv_235-3ubuntu2_ppc64el.deb ... Unpacking systemd-sysv (235-3ubuntu2) over (234-2ubuntu10) ... Preparing to unpack .../libcap-ng0_0.7.7-3.1_ppc64el.deb ... Unpacking libcap-ng0:ppc64el (0.7.7-3.1) over (0.7.7-3build1) ... Setting up libcap-ng0:ppc64el (0.7.7-3.1) ... (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.7-1_ppc64el.deb ... Unpacking libcomerr2:ppc64el (1.43.7-1) over (1.43.5-1) ... Setting up libcomerr2:ppc64el (1.43.7-1) ... (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.7-2_all.deb ... Unpacking libsemanage-common (2.7-2) over (2.7-1) ... Setting up libsemanage-common (2.7-2) ... (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.7-2_ppc64el.deb ... Unpacking libsemanage1:ppc64el (2.7-2) over (2.7-1) ... Setting up libsemanage1:ppc64el (2.7-2) ... (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../libss2_1.43.7-1_ppc64el.deb ... Unpacking libss2:ppc64el (1.43.7-1) over (1.43.5-1) ... Setting up libss2:ppc64el (1.43.7-1) ... (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../libnettle6_3.3-2_ppc64el.deb ... Unpacking libnettle6:ppc64el (3.3-2) over (3.3-1) ... Setting up libnettle6:ppc64el (3.3-2) ... (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.3-2_ppc64el.deb ... Unpacking libhogweed4:ppc64el (3.3-2) over (3.3-1) ... Setting up libhogweed4:ppc64el (3.3-2) ... (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.9-2_ppc64el.deb ... Unpacking libp11-kit0:ppc64el (0.23.9-2) over (0.23.7-3) ... Setting up libp11-kit0:ppc64el (0.23.9-2) ... (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.12-3_ppc64el.deb ... Unpacking libtasn1-6:ppc64el (4.12-3) over (4.12-2.1) ... Setting up libtasn1-6:ppc64el (4.12-3) ... (Reading database ... 12551 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.11_all.deb ... Unpacking sensible-utils (0.0.11) over (0.0.10) ... Preparing to unpack .../01-libassuan0_2.4.4-1_ppc64el.deb ... Unpacking libassuan0:ppc64el (2.4.4-1) over (2.4.3-3) ... Preparing to unpack .../02-pinentry-curses_1.0.0-3_ppc64el.deb ... Unpacking pinentry-curses (1.0.0-3) over (1.0.0-2) ... Preparing to unpack .../03-libnpth0_1.5-3_ppc64el.deb ... Unpacking libnpth0:ppc64el (1.5-3) over (1.5-2) ... Preparing to unpack .../04-gnupg_2.1.15-1ubuntu8_ppc64el.deb ... Unpacking gnupg (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Preparing to unpack .../05-gnupg-agent_2.1.15-1ubuntu8_ppc64el.deb ... Unpacking gnupg-agent (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Preparing to unpack .../06-libsqlite3-0_3.21.0-1_ppc64el.deb ... Unpacking libsqlite3-0:ppc64el (3.21.0-1) over (3.19.3-3) ... Preparing to unpack .../07-libssl1.0.0_1.0.2g-1ubuntu14_ppc64el.deb ... Unpacking libssl1.0.0:ppc64el (1.0.2g-1ubuntu14) over (1.0.2g-1ubuntu13) ... Preparing to unpack .../08-multiarch-support_2.26-0ubuntu2_ppc64el.deb ... Unpacking multiarch-support (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../09-openssl_1.0.2g-1ubuntu14_ppc64el.deb ... Unpacking openssl (1.0.2g-1ubuntu14) over (1.0.2g-1ubuntu13) ... Preparing to unpack .../10-tzdata_2017c-1_all.deb ... Unpacking tzdata (2017c-1) over (2017b-2) ... Preparing to unpack .../11-libidn2-0_2.0.4-1_ppc64el.deb ... Unpacking libidn2-0:ppc64el (2.0.4-1) over (2.0.2-5) ... Preparing to unpack .../12-libkeyutils1_1.5.9-9.2ubuntu1_ppc64el.deb ... Unpacking libkeyutils1:ppc64el (1.5.9-9.2ubuntu1) over (1.5.9-9ubuntu1) ... Preparing to unpack .../13-libpng16-16_1.6.34-1_ppc64el.deb ... Unpacking libpng16-16:ppc64el (1.6.34-1) over (1.6.32-2) ... Preparing to unpack .../14-apt-transport-https_1.6~alpha5_all.deb ... Unpacking apt-transport-https (1.6~alpha5) over (1.5~rc4) ... Preparing to unpack .../15-dpkg-dev_1.19.0.4ubuntu1_all.deb ... Unpacking dpkg-dev (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Preparing to unpack .../16-libdpkg-perl_1.19.0.4ubuntu1_all.deb ... Unpacking libdpkg-perl (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Preparing to unpack .../17-build-essential_12.4ubuntu1_ppc64el.deb ... Unpacking build-essential (12.4ubuntu1) over (12.1ubuntu2) ... Preparing to unpack .../18-libpsl5_0.19.1-3_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.19.1-3) over (0.18.0-2) ... Preparing to unpack .../19-libcurl3-gnutls_7.55.1-1ubuntu3_ppc64el.deb ... Unpacking libcurl3-gnutls:ppc64el (7.55.1-1ubuntu3) over (7.55.1-1ubuntu1) ... Preparing to unpack .../20-optipng_0.7.6-1ubuntu1_ppc64el.deb ... Unpacking optipng (0.7.6-1ubuntu1) over (0.7.6-1build1) ... Setting up libnpth0:ppc64el (1.5-3) ... Setting up libgomp1:ppc64el (7.2.0-16ubuntu1) ... Setting up libatomic1:ppc64el (7.2.0-16ubuntu1) ... Setting up libcc1-0:ppc64el (7.2.0-16ubuntu1) ... Setting up apt-transport-https (1.6~alpha5) ... Setting up libidn2-0:ppc64el (2.0.4-1) ... Setting up libssl1.0.0:ppc64el (1.0.2g-1ubuntu14) ... Setting up libasan4:ppc64el (7.2.0-16ubuntu1) ... Setting up libpng16-16:ppc64el (1.6.34-1) ... Setting up libpsl5:ppc64el (0.19.1-3) ... Setting up multiarch-support (2.26-0ubuntu2) ... Setting up tzdata (2017c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 30 22:52:22 UTC 2017. Universal Time is now: Thu Nov 30 22:52:22 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (235-3ubuntu2) ... Setting up libubsan0:ppc64el (7.2.0-16ubuntu1) ... Setting up libtsan0:ppc64el (7.2.0-16ubuntu1) ... Setting up linux-libc-dev:ppc64el (4.13.0-17.20) ... Setting up perl-modules-5.26 (5.26.1-3) ... Setting up optipng (0.7.6-1ubuntu1) ... Setting up cpp-7 (7.2.0-16ubuntu1) ... Setting up liblsan0:ppc64el (7.2.0-16ubuntu1) ... Setting up binutils-common:ppc64el (2.29.1-9ubuntu1) ... Setting up sensible-utils (0.0.11) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libperl5.26:ppc64el (5.26.1-3) ... Setting up openssl (1.0.2g-1ubuntu14) ... Setting up libsqlite3-0:ppc64el (3.21.0-1) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up libkeyutils1:ppc64el (1.5.9-9.2ubuntu1) ... Setting up libc6-dev:ppc64el (2.26-0ubuntu2) ... Setting up libassuan0:ppc64el (2.4.4-1) ... Setting up libitm1:ppc64el (7.2.0-16ubuntu1) ... Setting up libbinutils:ppc64el (2.29.1-9ubuntu1) ... Setting up libcurl3-gnutls:ppc64el (7.55.1-1ubuntu3) ... Setting up binutils-powerpc64le-linux-gnu (2.29.1-9ubuntu1) ... Setting up libgcc-7-dev:ppc64el (7.2.0-16ubuntu1) ... Setting up libstdc++-7-dev:ppc64el (7.2.0-16ubuntu1) ... Setting up perl (5.26.1-3) ... Setting up pinentry-curses (1.0.0-3) ... Setting up binutils (2.29.1-9ubuntu1) ... Setting up gnupg-agent (2.1.15-1ubuntu8) ... Setting up gcc-7 (7.2.0-16ubuntu1) ... Setting up g++-7 (7.2.0-16ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libdpkg-perl (1.19.0.4ubuntu1) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13798102 ppc64el bionic-proposed -c chroot:build-PACKAGEBUILD-13798102 --arch=ppc64el --dist=bionic-proposed --nolog r-base_3.4.3-1.dsc Initiating build PACKAGEBUILD-13798102 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:11 UTC 2017 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-ppc64el-018.buildd +==============================================================================+ | r-base 3.4.3-1 (ppc64el) 30 Nov 2017 22:52 | +==============================================================================+ Package: r-base Version: 3.4.3-1 Source Version: 3.4.3-1 Distribution: bionic-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/r-base-B81nug/r-base-3.4.3' with '<>' I: NOTICE: Log filtering will replace 'build/r-base-B81nug' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13798102/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-base_3.4.3-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ng4jzu/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-ng4jzu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ng4jzu/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ng4jzu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ng4jzu/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-ng4jzu/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (136 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ng4jzu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12549 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, openjdk-9-jdk | default-jdk, mpack, bash-completion Filtered Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, openjdk-9-jdk | default-jdk, mpack, bash-completion dpkg-deb: building package 'sbuild-build-depends-r-base-dummy' in '/<>/resolver-6hxE3Z/apt_archive/sbuild-build-depends-r-base-dummy.deb'. Ign:1 copy:/<>/resolver-6hxE3Z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-6hxE3Z/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-6hxE3Z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-6hxE3Z/apt_archive ./ Sources [515 B] Get:5 copy:/<>/resolver-6hxE3Z/apt_archive ./ Packages [805 B] Fetched 3439 B in 0s (118 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-base build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libcurl3-gnutls Use 'apt autoremove' to remove it. The following additional packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bash-completion bison bsdmainutils ca-certificates-java debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig fontconfig-config fonts-adf-accanthis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-junicode fonts-lato fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-noto-hinted fonts-oflb-asana-math fonts-roboto-hinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix gettext gettext-base gfortran gfortran-7 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools intltool-debian java-common libarchive-zip-perl libasound2 libasound2-data libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas-dev libblas3 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libcups2 libcupsimage2 libcurl3 libcurl4-openssl-dev libdatrie1 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran-7-dev libgfortran4 libgif7 libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu60 libijs-0.35 libjbig-dev libjbig0 libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libllvm5.0 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmime-charset-perl libmpdec2 libncurses5-dev libnspr4 libnss3 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpoppler68 libpotrace0 libptexenc1 libpthread-stubs0-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libreadline-dev librsvg2-2 librsvg2-common libsensors4 libsigsegv2 libsm-dev libsm6 libsombok3 libsynctex1 libtcl8.6 libtexlua52 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtinfo-dev libtk8.6 libtool libunicode-linebreak-perl libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont1 libxfont2 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libzzip-0-13 m4 man-db mime-support mpack openjdk-9-jdk openjdk-9-jdk-headless openjdk-9-jre openjdk-9-jre-headless pkg-config po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal python3 python3-minimal python3.6 python3.6-minimal shared-mime-info t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ubuntu-mono ucf x11-common x11-utils x11-xkb-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation dh-make dwz fontforge gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff default-jre libasound2-plugins alsa-utils liblapack-doc libcairo2-doc cups-common libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssl1.0-dev | libssl-dev libglib2.0-doc gvfs libice-doc icu-doc liblcms2-utils liblzma-doc libencode-hanextra-perl libpod2-base-perl ncurses-doc imagemagick libpango1.0-doc pcscd readline-doc librsvg2-bin lm-sensors libsm-doc libtool-doc gcj-jdk libxcb-doc libxext-doc libxt-doc m4-doc less www-browser apparmor mail-transport-agent inews openjdk-9-demo openjdk-9-source visualvm icedtea-8-plugin libnss-mdns fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc tcl-tclreadline tcl8.6-doc texinfo-doc-nonfree gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer chktex dvidvi dvipng fragmaster lacheck latexdiff latexmk purifyeps xindy cm-super python-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby tk8.6-doc mesa-utils Recommended packages: curl | wget | lynx-cur at-spi2-core bzip2-doc libcupsfilters1 dbus libarchive-cpio-perl libgdk-pixbuf2.0-bin libtxc-dxtn-s2tc | libtxc-dxtn-s2tc0 | libtxc-dxtn0 xdg-user-dirs fonts-droid-fallback libgail-common libgtk2.0-bin libpng-tools libltdl-dev libx11-doc libxml-sax-expat-perl libmail-sendmail-perl lmodern ruby wish ghostscript libfile-homedir-perl libyaml-tiny-perl ruby | ruby-interpreter texlive-fonts-extra-doc tex-gyre texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pictures-doc tk xterm | gnome-terminal | x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-xserver-utils The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bash-completion bison bsdmainutils ca-certificates-java debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig fontconfig-config fonts-adf-accanthis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-junicode fonts-lato fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-noto-hinted fonts-oflb-asana-math fonts-roboto-hinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix gettext gettext-base gfortran gfortran-7 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools intltool-debian java-common libarchive-zip-perl libasound2 libasound2-data libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas-dev libblas3 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libcups2 libcupsimage2 libcurl3 libcurl4-openssl-dev libdatrie1 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran-7-dev libgfortran4 libgif7 libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu60 libijs-0.35 libjbig-dev libjbig0 libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libllvm5.0 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmime-charset-perl libmpdec2 libncurses5-dev libnspr4 libnss3 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpoppler68 libpotrace0 libptexenc1 libpthread-stubs0-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libreadline-dev librsvg2-2 librsvg2-common libsensors4 libsigsegv2 libsm-dev libsm6 libsombok3 libsynctex1 libtcl8.6 libtexlua52 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtinfo-dev libtk8.6 libtool libunicode-linebreak-perl libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont1 libxfont2 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libzzip-0-13 m4 man-db mime-support mpack openjdk-9-jdk openjdk-9-jdk-headless openjdk-9-jre openjdk-9-jre-headless pkg-config po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal python3 python3-minimal python3.6 python3.6-minimal sbuild-build-depends-r-base-dummy shared-mime-info t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ubuntu-mono ucf x11-common x11-utils x11-xkb-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev 0 upgraded, 325 newly installed, 1 to remove and 0 not upgraded. Need to get 681 MB of archives. After this operation, 2170 MB of additional disk space will be used. Get:1 copy:/<>/resolver-6hxE3Z/apt_archive ./ sbuild-build-depends-r-base-dummy 0.invalid.0 [1140 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpython3.6-minimal ppc64el 3.6.3-1ubuntu1 [532 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main ppc64el libexpat1 ppc64el 2.2.3-2 [88.6 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main ppc64el python3.6-minimal ppc64el 3.6.3-1ubuntu1 [1532 kB] Get:5 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el python3-minimal ppc64el 3.6.3-2 [23.7 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main ppc64el mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmpdec2 ppc64el 2.4.2-1 [82.6 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpython3.6-stdlib ppc64el 3.6.3-1ubuntu1 [2140 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main ppc64el python3.6 ppc64el 3.6.3-1ubuntu1 [175 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libpython3-stdlib ppc64el 3.6.3-2 [7204 B] Get:11 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-python all 2.20170125 [83.7 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el python3 ppc64el 3.6.3-2 [8768 B] Get:13 http://ftpmaster.internal/ubuntu bionic/main ppc64el bash-completion all 1:2.1-4.3ubuntu1 [150 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxau6 ppc64el 1:1.0.8-1 [7460 B] Get:15 http://ftpmaster.internal/ubuntu bionic/main ppc64el libbsd0 ppc64el 0.8.6-3 [50.0 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxdmcp6 ppc64el 1:1.1.2-3 [11.0 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb1 ppc64el 1.12-1ubuntu1 [43.9 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-data all 2:1.6.4-3 [114 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-6 ppc64el 2:1.6.4-3 [566 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxext6 ppc64el 2:1.3.3-1 [30.7 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main ppc64el groff-base ppc64el 1.22.3-9 [1361 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main ppc64el bsdmainutils ppc64el 9.0.14ubuntu1 [183 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpipeline1 ppc64el 1.5.0-1 [24.7 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el man-db ppc64el 2.7.6.1-4 [913 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfreetype6 ppc64el 2.8-0.2ubuntu2 [385 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main ppc64el ucf all 3.0036 [52.9 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main ppc64el fonts-dejavu-core all 2.37-1 [1041 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main ppc64el fontconfig-config all 2.12.6-0ubuntu1 [55.5 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfontconfig1 ppc64el 2.12.6-0ubuntu1 [166 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main ppc64el fontconfig ppc64el 2.12.6-0ubuntu1 [169 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main ppc64el fonts-lato all 2.0-2 [2698 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg-turbo8 ppc64el 1.5.2-0ubuntu5 [146 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblzo2-2 ppc64el 2.08-1.2 [67.2 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11-common all 1:7.7+19ubuntu3 [22.0 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main ppc64el libice6 ppc64el 2:1.0.9-2 [38.0 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsm6 ppc64el 2:1.2.2-1 [15.1 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxrender1 ppc64el 1:0.9.10-1 [17.6 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxft2 ppc64el 2.3.2-1 [39.3 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxinerama1 ppc64el 2:1.1.3-1 [7160 B] Get:40 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxshmfence1 ppc64el 1.2-1 [5170 B] Get:41 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxss1 ppc64el 1:1.2.2-1 [7510 B] Get:42 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxxf86dga1 ppc64el 2:1.1.4-1 [11.3 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1 [10.7 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main ppc64el poppler-data all 0.4.8-2 [1479 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpython2.7-minimal ppc64el 2.7.14-2ubuntu2 [338 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main ppc64el python2.7-minimal ppc64el 2.7.14-2ubuntu2 [1439 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main ppc64el python-minimal ppc64el 2.7.14-2ubuntu1 [28.1 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpython2.7-stdlib ppc64el 2.7.14-2ubuntu2 [2007 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main ppc64el python2.7 ppc64el 2.7.14-2ubuntu2 [233 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpython-stdlib ppc64el 2.7.14-2ubuntu1 [7576 B] Get:51 http://ftpmaster.internal/ubuntu bionic/main ppc64el python ppc64el 2.7.14-2ubuntu1 [140 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main ppc64el tex-common all 6.09 [33.0 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjbig0 ppc64el 2.1-3.1 [26.4 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmagic-mgc ppc64el 1:5.32-1 [184 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmagic1 ppc64el 1:5.32-1 [76.6 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main ppc64el file ppc64el 1:5.32-1 [22.7 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdbus-1-3 ppc64el 1.12.2-1ubuntu1 [183 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main ppc64el libelf1 ppc64el 0.170-0.1 [46.6 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglib2.0-0 ppc64el 2.54.1-1ubuntu1 [1160 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglib2.0-data all 2.54.1-1ubuntu1 [4250 B] Get:61 http://ftpmaster.internal/ubuntu bionic/main ppc64el libicu60 ppc64el 60.1-1ubuntu2 [8339 kB] Get:62 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-5.1ubuntu1 [621 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main ppc64el shared-mime-info ppc64el 1.9-2 [431 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main ppc64el xkb-data all 2.19-1.1ubuntu1 [312 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main ppc64el gettext-base ppc64el 0.19.8.1-4ubuntu1 [49.5 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgirepository-1.0-1 ppc64el 1.54.1-3 [81.0 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main ppc64el gir1.2-glib-2.0 ppc64el 1.54.1-3 [131 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdrm-common all 2.4.88-1 [4780 B] Get:69 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdrm2 ppc64el 2.4.88-1 [33.0 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main ppc64el libedit2 ppc64el 3.1-20170329-1 [79.6 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxmuu1 ppc64el 2:1.1.2-2 [9642 B] Get:72 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el xauth ppc64el 1:1.0.10-1 [27.0 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main ppc64el hicolor-icon-theme all 0.17-1 [10.3 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:75 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtiff5 ppc64el 4.0.8-6 [165 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgdk-pixbuf2.0-common all 2.36.11-1 [4260 B] Get:77 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgdk-pixbuf2.0-0 ppc64el 2.36.11-1 [195 kB] Get:78 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el gtk-update-icon-cache ppc64el 3.22.26-2ubuntu1 [28.6 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpixman-1-0 ppc64el 0.34.0-1 [201 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-render0 ppc64el 1.12-1ubuntu1 [13.4 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-shm0 ppc64el 1.12-1ubuntu1 [5494 B] Get:82 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcairo2 ppc64el 1.15.8-2 [670 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcroco3 ppc64el 0.6.12-1 [74.4 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main ppc64el libthai-data all 0.1.27-1 [133 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdatrie1 ppc64el 0.2.10-5 [17.0 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main ppc64el libthai0 ppc64el 0.1.27-1 [17.9 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpango-1.0-0 ppc64el 1.40.13-2 [163 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgraphite2-3 ppc64el 1.3.10-6 [66.6 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main ppc64el libharfbuzz0b ppc64el 1.7.1-1 [236 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpangoft2-1.0-0 ppc64el 1.40.13-2 [34.4 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpangocairo-1.0-0 ppc64el 1.40.13-2 [21.0 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main ppc64el librsvg2-2 ppc64el 2.40.18-2 [116 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main ppc64el librsvg2-common ppc64el 2.40.18-2 [5312 B] Get:94 http://ftpmaster.internal/ubuntu bionic/main ppc64el humanity-icon-theme all 0.6.13 [1288 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main ppc64el ubuntu-mono all 16.10+18.04.20171115.1-0ubuntu1 [151 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main ppc64el adwaita-icon-theme all 3.26.1-1ubuntu1 [3447 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsigsegv2 ppc64el 2.11-1 [13.3 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/main ppc64el m4 ppc64el 1.4.18-1 [202 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main ppc64el autoconf all 2.69-11 [322 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main ppc64el autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main ppc64el automake all 1:1.15.1-3ubuntu1 [509 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main ppc64el autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main ppc64el libbison-dev ppc64el 2:3.0.4.dfsg-1build1 [339 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main ppc64el bison ppc64el 2:3.0.4.dfsg-1build1 [263 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main ppc64el java-common all 0.59ubuntu1 [7232 B] Get:106 http://ftpmaster.internal/ubuntu bionic/main ppc64el libavahi-common-data ppc64el 0.6.32-1ubuntu1 [22.1 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main ppc64el libavahi-common3 ppc64el 0.6.32-1ubuntu1 [19.5 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main ppc64el libavahi-client3 ppc64el 0.6.32-1ubuntu1 [22.5 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcups2 ppc64el 2.2.6-2 [241 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblcms2-2 ppc64el 2.8-4 [184 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnspr4 ppc64el 2:4.16-1ubuntu2 [105 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnss3 ppc64el 2:3.32-1ubuntu3 [1174 kB] Get:113 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcsclite1 ppc64el 1.8.22-1ubuntu1 [28.8 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxi6 ppc64el 2:1.7.9-1 [29.0 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxtst6 ppc64el 2:1.2.3-1 [13.5 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/universe ppc64el openjdk-9-jre-headless ppc64el 9.0.1+11-1 [36.2 MB] Get:117 http://ftpmaster.internal/ubuntu bionic/main ppc64el ca-certificates-java all 20170930 [12.0 kB] Get:118 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtool all 2.4.6-2 [194 kB] Get:119 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-autoreconf all 15 [15.8 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main ppc64el libarchive-zip-perl all 1.59-1 [84.0 kB] Get:121 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtimedate-perl all 2.3000-2 [37.5 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-strip-nondeterminism all 0.040-1 [5196 B] Get:124 http://ftpmaster.internal/ubuntu bionic/main ppc64el gettext ppc64el 0.19.8.1-4ubuntu1 [1142 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main ppc64el po-debconf all 1.0.20 [232 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main ppc64el debhelper all 10.10.9ubuntu1 [871 kB] Get:128 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-adf-accanthis all 0.20110505-1 [202 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-adf-gillius all 0.20110505-1 [190 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-adf-universalis all 0.20110505-1 [111 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-cabin all 1.5-2 [140 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-comfortaa all 3.001-1 [128 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-croscore all 20171026-2 [2135 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-crosextra-caladea all 20130214-2 [82.4 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-crosextra-carlito all 20130920-1 [742 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main ppc64el fonts-dejavu-extra all 2.37-1 [1953 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-ebgaramond all 0.016-1 [474 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-ebgaramond-extra all 0.016-1 [2157 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main ppc64el fonts-font-awesome all 4.7.0~dfsg-3 [513 kB] Get:140 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el fonts-freefont-otf all 20120503-7 [3055 kB] Get:141 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el fonts-freefont-ttf all 20120503-7 [4202 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-gfs-artemisia all 1.1-5 [260 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-gfs-complutum all 1.1-6 [41.6 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-gfs-didot all 1.1-6 [278 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-gfs-neohellenic all 1.1-6 [215 kB] Get:146 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-gfs-olga all 1.1-5 [33.4 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-gfs-solomos all 1.1-5 [40.7 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-junicode all 1.001-1 [683 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-linuxlibertine all 5.3.0-4 [1627 kB] Get:150 http://ftpmaster.internal/ubuntu bionic/main ppc64el fonts-lmodern all 2.004.5-3 [4551 kB] Get:151 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-lobster all 2.0-2 [38.7 kB] Get:152 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-lobstertwo all 2.0-2 [92.7 kB] Get:153 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-noto-hinted all 20171026-2 [6653 kB] Get:154 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-oflb-asana-math all 000.907-6 [246 kB] Get:155 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-roboto-hinted all 2:0~20160106-2 [2918 kB] Get:156 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-sil-gentium all 20081126:1.03-1 [247 kB] Get:157 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-sil-gentium-basic all 1.1-7 [379 kB] Get:158 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-sil-gentiumplus all 5.000-1 [2805 kB] Get:159 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-sil-gentiumplus-compact all 5.000-2 [1514 kB] Get:160 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgfortran4 ppc64el 7.2.0-16ubuntu1 [292 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgfortran-7-dev ppc64el 7.2.0-16ubuntu1 [347 kB] Get:162 http://ftpmaster.internal/ubuntu bionic/main ppc64el gfortran-7 ppc64el 7.2.0-16ubuntu1 [6650 kB] Get:163 http://ftpmaster.internal/ubuntu bionic/main ppc64el gfortran ppc64el 4:7.2.0-1ubuntu1 [1274 B] Get:164 http://ftpmaster.internal/ubuntu bionic/main ppc64el gir1.2-freedesktop ppc64el 1.54.1-3 [9088 B] Get:165 http://ftpmaster.internal/ubuntu bionic/main ppc64el gir1.2-harfbuzz-0.0 ppc64el 1.7.1-1 [18.5 kB] Get:166 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpangoxft-1.0-0 ppc64el 1.40.13-2 [15.6 kB] Get:167 http://ftpmaster.internal/ubuntu bionic/main ppc64el gir1.2-pango-1.0 ppc64el 1.40.13-2 [21.6 kB] Get:168 http://ftpmaster.internal/ubuntu bionic/main ppc64el icu-devtools ppc64el 60.1-1ubuntu2 [206 kB] Get:169 http://ftpmaster.internal/ubuntu bionic/main ppc64el libasound2-data all 1.1.3-5 [36.1 kB] Get:170 http://ftpmaster.internal/ubuntu bionic/main ppc64el libasound2 ppc64el 1.1.3-5 [336 kB] Get:171 http://ftpmaster.internal/ubuntu bionic/main ppc64el libatk1.0-data all 2.26.1-1 [2884 B] Get:172 http://ftpmaster.internal/ubuntu bionic/main ppc64el libatk1.0-0 ppc64el 2.26.1-1 [40.2 kB] Get:173 http://ftpmaster.internal/ubuntu bionic/main ppc64el libatspi2.0-0 ppc64el 2.26.2-2 [64.2 kB] Get:174 http://ftpmaster.internal/ubuntu bionic/main ppc64el libatk-bridge2.0-0 ppc64el 2.26.1-1 [61.4 kB] Get:175 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfontenc1 ppc64el 1:1.1.3-1 [13.9 kB] Get:176 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglapi-mesa ppc64el 17.2.4-0ubuntu2 [23.5 kB] Get:177 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-xcb1 ppc64el 2:1.6.4-3 [9832 B] Get:178 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-dri2-0 ppc64el 1.12-1ubuntu1 [6600 B] Get:179 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-dri3-0 ppc64el 1.12-1ubuntu1 [5134 B] Get:180 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-glx0 ppc64el 1.12-1ubuntu1 [19.7 kB] Get:181 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-present0 ppc64el 1.12-1ubuntu1 [5420 B] Get:182 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-sync1 ppc64el 1.12-1ubuntu1 [8320 B] Get:183 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxdamage1 ppc64el 1:1.1.4-3 [7056 B] Get:184 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxfixes3 ppc64el 1:5.0.3-1 [10.6 kB] Get:185 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdrm-amdgpu1 ppc64el 2.4.88-1 [20.9 kB] Get:186 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdrm-nouveau2 ppc64el 2.4.88-1 [18.2 kB] Get:187 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdrm-radeon1 ppc64el 2.4.88-1 [26.1 kB] Get:188 http://ftpmaster.internal/ubuntu bionic/main ppc64el libllvm5.0 ppc64el 1:5.0-4 [12.8 MB] Get:189 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsensors4 ppc64el 1:3.4.0-4 [28.6 kB] Get:190 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgl1-mesa-dri ppc64el 17.2.4-0ubuntu2 [5885 kB] Get:191 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgl1-mesa-glx ppc64el 17.2.4-0ubuntu2 [139 kB] Get:192 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxt6 ppc64el 1:1.1.5-1 [152 kB] Get:193 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxmu6 ppc64el 2:1.1.2-2 [43.4 kB] Get:194 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxpm4 ppc64el 1:3.5.12-1 [35.9 kB] Get:195 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxaw7 ppc64el 2:1.0.13-1 [176 kB] Get:196 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-shape0 ppc64el 1.12-1ubuntu1 [5756 B] Get:197 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcomposite1 ppc64el 1:0.4.4-2 [6940 B] Get:198 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxrandr2 ppc64el 2:1.5.1-1 [17.3 kB] Get:199 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxv1 ppc64el 2:1.0.11-1 [10.8 kB] Get:200 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11-utils ppc64el 7.7+3build1 [202 kB] Get:201 http://ftpmaster.internal/ubuntu bionic/main ppc64el libatk-wrapper-java all 0.33.3-13 [34.1 kB] Get:202 http://ftpmaster.internal/ubuntu bionic/main ppc64el libatk-wrapper-java-jni ppc64el 0.33.3-13 [24.1 kB] Get:203 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libblas3 ppc64el 3.7.1-4ubuntu1 [95.8 kB] Get:204 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libblas-dev ppc64el 3.7.1-4ubuntu1 [99.9 kB] Get:205 http://ftpmaster.internal/ubuntu bionic/main ppc64el libbz2-dev ppc64el 1.0.6-8.1 [40.9 kB] Get:206 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcairo-gobject2 ppc64el 1.15.8-2 [17.2 kB] Get:207 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcairo-script-interpreter2 ppc64el 1.15.8-2 [60.0 kB] Get:208 http://ftpmaster.internal/ubuntu bionic/main ppc64el libexpat1-dev ppc64el 2.2.3-2 [135 kB] Get:209 http://ftpmaster.internal/ubuntu bionic/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-0ubuntu2 [178 kB] Get:210 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpng-dev ppc64el 1.6.34-1 [219 kB] Get:211 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfreetype6-dev ppc64el 2.8-0.2ubuntu2 [2597 kB] Get:212 http://ftpmaster.internal/ubuntu bionic/main ppc64el pkg-config ppc64el 0.29.1-0ubuntu2 [44.1 kB] Get:213 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfontconfig1-dev ppc64el 2.12.6-0ubuntu1 [725 kB] Get:214 http://ftpmaster.internal/ubuntu bionic/main ppc64el xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:215 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-core-dev all 7.0.31-1 [700 kB] Get:216 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxau-dev ppc64el 1:1.0.8-1 [9358 B] Get:217 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxdmcp-dev ppc64el 1:1.1.2-3 [26.1 kB] Get:218 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-input-dev all 2.3.2-1 [118 kB] Get:219 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-kb-dev all 1.0.7-1 [226 kB] Get:220 http://ftpmaster.internal/ubuntu bionic/main ppc64el xtrans-dev all 1.3.5-1 [70.5 kB] Get:221 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpthread-stubs0-dev ppc64el 0.3-4 [3894 B] Get:222 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb1-dev ppc64el 1.12-1ubuntu1 [83.4 kB] Get:223 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-dev ppc64el 2:1.6.4-3 [651 kB] Get:224 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-render-dev all 2:0.11.1-2 [20.1 kB] Get:225 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxrender-dev ppc64el 1:0.9.10-1 [24.1 kB] Get:226 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-xext-dev all 7.3.0-1 [212 kB] Get:227 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxext-dev ppc64el 2:1.3.3-1 [86.5 kB] Get:228 http://ftpmaster.internal/ubuntu bionic/main ppc64el libice-dev ppc64el 2:1.0.9-2 [48.6 kB] Get:229 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsm-dev ppc64el 2:1.2.2-1 [16.6 kB] Get:230 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpixman-1-dev ppc64el 0.34.0-1 [233 kB] Get:231 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-render0-dev ppc64el 1.12-1ubuntu1 [18.4 kB] Get:232 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-shm0-dev ppc64el 1.12-1ubuntu1 [6582 B] Get:233 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglib2.0-bin ppc64el 2.54.1-1ubuntu1 [74.0 kB] Get:234 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglib2.0-dev-bin ppc64el 2.54.1-1ubuntu1 [86.9 kB] Get:235 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre16-3 ppc64el 2:8.39-5ubuntu3 [145 kB] Get:236 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre32-3 ppc64el 2:8.39-5ubuntu3 [135 kB] Get:237 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcrecpp0v5 ppc64el 2:8.39-5ubuntu3 [16.5 kB] Get:238 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre3-dev ppc64el 2:8.39-5ubuntu3 [518 kB] Get:239 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglib2.0-dev ppc64el 2.54.1-1ubuntu1 [1628 kB] Get:240 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcairo2-dev ppc64el 1.15.8-2 [747 kB] Get:241 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcupsimage2 ppc64el 2.2.6-2 [24.3 kB] Get:242 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcurl3 ppc64el 7.55.1-1ubuntu3 [198 kB] Get:243 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcurl4-openssl-dev ppc64el 7.55.1-1ubuntu3 [286 kB] Get:244 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgif7 ppc64el 5.1.4-1 [32.4 kB] Get:245 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgraphite2-dev ppc64el 1.3.10-6 [14.3 kB] Get:246 http://ftpmaster.internal/ubuntu bionic/main ppc64el libijs-0.35 ppc64el 0.35-12 [15.0 kB] Get:247 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjbig2dec0 ppc64el 0.13-5 [57.4 kB] Get:248 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpaper1 ppc64el 1.1.24+nmu5ubuntu1 [13.4 kB] Get:249 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgs9-common all 9.21~dfsg+1-0ubuntu3 [5121 kB] Get:250 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgs9 ppc64el 9.21~dfsg+1-0ubuntu3 [2483 kB] Get:251 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgtk2.0-common all 2.24.31-2ubuntu1 [124 kB] Get:252 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcursor1 ppc64el 1:1.1.14-3ubuntu1 [22.2 kB] Get:253 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgtk2.0-0 ppc64el 2.24.31-2ubuntu1 [1623 kB] Get:254 http://ftpmaster.internal/ubuntu bionic/main ppc64el libharfbuzz-icu0 ppc64el 1.7.1-1 [5868 B] Get:255 http://ftpmaster.internal/ubuntu bionic/main ppc64el libharfbuzz-gobject0 ppc64el 1.7.1-1 [13.1 kB] Get:256 http://ftpmaster.internal/ubuntu bionic/main ppc64el libicu-dev ppc64el 60.1-1ubuntu2 [9581 kB] Get:257 http://ftpmaster.internal/ubuntu bionic/main ppc64el libharfbuzz-dev ppc64el 1.7.1-1 [314 kB] Get:258 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg-turbo8-dev ppc64el 1.5.2-0ubuntu5 [266 kB] Get:259 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu8 [1606 B] Get:260 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu8 [1602 B] Get:261 http://ftpmaster.internal/ubuntu bionic/main ppc64el libkpathsea6 ppc64el 2017.20170613.44572-6build1 [58.5 kB] Get:262 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el liblapack3 ppc64el 3.7.1-4ubuntu1 [1498 kB] Get:263 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el liblapack-dev ppc64el 3.7.1-4ubuntu1 [1544 kB] Get:264 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libmime-charset-perl all 1.012-2 [30.8 kB] Get:265 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtinfo-dev ppc64el 6.0+20160625-1ubuntu1 [89.1 kB] Get:266 http://ftpmaster.internal/ubuntu bionic/main ppc64el libncurses5-dev ppc64el 6.0+20160625-1ubuntu1 [195 kB] Get:267 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxft-dev ppc64el 2.3.2-1 [51.4 kB] Get:268 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpango1.0-dev ppc64el 1.40.13-2 [328 kB] Get:269 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpaper-utils ppc64el 1.1.24+nmu5ubuntu1 [8368 B] Get:270 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpoppler68 ppc64el 0.57.0-2ubuntu5 [843 kB] Get:271 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpotrace0 ppc64el 1.14-2 [18.3 kB] Get:272 http://ftpmaster.internal/ubuntu bionic/main ppc64el libptexenc1 ppc64el 2017.20170613.44572-6build1 [35.8 kB] Get:273 http://ftpmaster.internal/ubuntu bionic/main ppc64el libreadline-dev ppc64el 7.0-0ubuntu2 [163 kB] Get:274 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libsombok3 ppc64el 2.4.0-1 [26.9 kB] Get:275 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsynctex1 ppc64el 2017.20170613.44572-6build1 [40.4 kB] Get:276 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtcl8.6 ppc64el 8.6.7+dfsg-1 [923 kB] Get:277 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtexlua52 ppc64el 2017.20170613.44572-6build1 [107 kB] Get:278 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libtext-unidecode-perl all 1.30-1 [99.0 kB] Get:279 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjbig-dev ppc64el 2.1-3.1 [25.3 kB] Get:280 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblzma-dev ppc64el 5.2.2-1.3 [157 kB] Get:281 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtiffxx5 ppc64el 4.0.8-6 [6116 B] Get:282 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtiff5-dev ppc64el 4.0.8-6 [304 kB] Get:283 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtk8.6 ppc64el 8.6.7-1ubuntu1 [719 kB] Get:284 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libunicode-linebreak-perl ppc64el 0.0.20160702-1build2 [94.7 kB] Get:285 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxfont1 ppc64el 1:1.5.2-4ubuntu2 [101 kB] Get:286 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxfont2 ppc64el 1:2.0.1-4ubuntu1 [100 kB] Get:287 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxkbfile1 ppc64el 1:1.0.9-2 [65.5 kB] Get:288 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxml-namespacesupport-perl all 1.12-1 [13.2 kB] Get:289 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxml-sax-base-perl all 1.09-1 [18.8 kB] Get:290 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxml-sax-perl all 0.99+dfsg-2ubuntu1 [64.6 kB] Get:291 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxml-libxml-perl ppc64el 2.0128+dfsg-5 [305 kB] Get:292 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB] Get:293 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxss-dev ppc64el 1:1.2.2-1 [11.8 kB] Get:294 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxt-dev ppc64el 1:1.1.5-1 [406 kB] Get:295 http://ftpmaster.internal/ubuntu bionic/main ppc64el libzzip-0-13 ppc64el 0.13.62-3.1 [24.5 kB] Get:296 http://ftpmaster.internal/ubuntu bionic/universe ppc64el mpack ppc64el 1.6-8.2 [35.3 kB] Get:297 http://ftpmaster.internal/ubuntu bionic/universe ppc64el openjdk-9-jre ppc64el 9.0.1+11-1 [51.2 kB] Get:298 http://ftpmaster.internal/ubuntu bionic/universe ppc64el openjdk-9-jdk-headless ppc64el 9.0.1+11-1 [72.1 MB] Get:299 http://ftpmaster.internal/ubuntu bionic/universe ppc64el openjdk-9-jdk ppc64el 9.0.1+11-1 [74.4 kB] Get:300 http://ftpmaster.internal/ubuntu bionic/main ppc64el preview-latex-style all 11.91-1ubuntu1 [185 kB] Get:301 http://ftpmaster.internal/ubuntu bionic/main ppc64el t1utils ppc64el 1.41-2 [61.8 kB] Get:302 http://ftpmaster.internal/ubuntu bionic/main ppc64el tcl8.6 ppc64el 8.6.7+dfsg-1 [14.4 kB] Get:303 http://ftpmaster.internal/ubuntu bionic/main ppc64el tcl8.6-dev ppc64el 8.6.7+dfsg-1 [957 kB] Get:304 http://ftpmaster.internal/ubuntu bionic/universe ppc64el texinfo ppc64el 6.5.0.dfsg.1-1 [752 kB] Get:305 http://ftpmaster.internal/ubuntu bionic/main ppc64el texlive-binaries ppc64el 2017.20170613.44572-6build1 [8584 kB] Get:306 http://ftpmaster.internal/ubuntu bionic/main ppc64el xdg-utils all 1.1.1-1ubuntu3 [59.4 kB] Get:307 http://ftpmaster.internal/ubuntu bionic/main ppc64el texlive-base all 2017.20171128-1 [18.6 MB] Get:308 http://ftpmaster.internal/ubuntu bionic/main ppc64el texlive-latex-base all 2017.20171128-1 [948 kB] Get:309 http://ftpmaster.internal/ubuntu bionic/universe ppc64el texlive-extra-utils all 2017.20171128-1 [20.9 MB] Get:310 http://ftpmaster.internal/ubuntu bionic/universe ppc64el fonts-stix all 1.1.1-4 [591 kB] Get:311 http://ftpmaster.internal/ubuntu bionic/universe ppc64el texlive-fonts-extra all 2017.20171128-1 [305 MB] Get:312 http://ftpmaster.internal/ubuntu bionic/universe ppc64el texlive-fonts-recommended all 2017.20171128-1 [5263 kB] Get:313 http://ftpmaster.internal/ubuntu bionic/universe ppc64el texlive-plain-generic all 2017.20171128-1 [23.6 MB] Get:314 http://ftpmaster.internal/ubuntu bionic/universe ppc64el texlive-generic-recommended all 2017.20171128-1 [15.9 kB] Get:315 http://ftpmaster.internal/ubuntu bionic/main ppc64el texlive-latex-recommended all 2017.20171128-1 [14.9 MB] Get:316 http://ftpmaster.internal/ubuntu bionic/universe ppc64el texlive-pictures all 2017.20171128-1 [3997 kB] Get:317 http://ftpmaster.internal/ubuntu bionic/universe ppc64el texlive-latex-extra all 2017.20171128-1 [10.5 MB] Get:318 http://ftpmaster.internal/ubuntu bionic/main ppc64el tk8.6 ppc64el 8.6.7-1ubuntu1 [12.4 kB] Get:319 http://ftpmaster.internal/ubuntu bionic/main ppc64el tk8.6-dev ppc64el 8.6.7-1ubuntu1 [732 kB] Get:320 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11-xkb-utils ppc64el 7.7+3 [161 kB] Get:321 http://ftpmaster.internal/ubuntu bionic/main ppc64el xfonts-encodings all 1:1.0.4-2 [573 kB] Get:322 http://ftpmaster.internal/ubuntu bionic/main ppc64el xfonts-utils ppc64el 1:7.7+4 [85.2 kB] Get:323 http://ftpmaster.internal/ubuntu bionic/main ppc64el xfonts-base all 1:1.0.4+nmu1 [5914 kB] Get:324 http://ftpmaster.internal/ubuntu bionic/main ppc64el xserver-common all 2:1.19.5-0ubuntu2 [26.9 kB] Get:325 http://ftpmaster.internal/ubuntu bionic/universe ppc64el xvfb ppc64el 2:1.19.5-0ubuntu2 [867 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 681 MB in 1min 5s (10.4 MB/s) (Reading database ... 12549 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package libpython3.6-minimal:ppc64el. (Reading database ... 12540 files and directories currently installed.) Preparing to unpack .../0-libpython3.6-minimal_3.6.3-1ubuntu1_ppc64el.deb ... Unpacking libpython3.6-minimal:ppc64el (3.6.3-1ubuntu1) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../1-libexpat1_2.2.3-2_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.2.3-2) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../2-python3.6-minimal_3.6.3-1ubuntu1_ppc64el.deb ... Unpacking python3.6-minimal (3.6.3-1ubuntu1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../3-python3-minimal_3.6.3-2_ppc64el.deb ... Unpacking python3-minimal (3.6.3-2) ... Selecting previously unselected package mime-support. Preparing to unpack .../4-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libmpdec2:ppc64el. Preparing to unpack .../5-libmpdec2_2.4.2-1_ppc64el.deb ... Unpacking libmpdec2:ppc64el (2.4.2-1) ... Selecting previously unselected package libpython3.6-stdlib:ppc64el. Preparing to unpack .../6-libpython3.6-stdlib_3.6.3-1ubuntu1_ppc64el.deb ... Unpacking libpython3.6-stdlib:ppc64el (3.6.3-1ubuntu1) ... Selecting previously unselected package python3.6. Preparing to unpack .../7-python3.6_3.6.3-1ubuntu1_ppc64el.deb ... Unpacking python3.6 (3.6.3-1ubuntu1) ... Selecting previously unselected package libpython3-stdlib:ppc64el. Preparing to unpack .../8-libpython3-stdlib_3.6.3-2_ppc64el.deb ... Unpacking libpython3-stdlib:ppc64el (3.6.3-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../9-dh-python_2.20170125_all.deb ... Unpacking dh-python (2.20170125) ... Setting up libpython3.6-minimal:ppc64el (3.6.3-1ubuntu1) ... Setting up libexpat1:ppc64el (2.2.3-2) ... Setting up python3.6-minimal (3.6.3-1ubuntu1) ... Setting up python3-minimal (3.6.3-2) ... Selecting previously unselected package python3. (Reading database ... 13500 files and directories currently installed.) Preparing to unpack .../00-python3_3.6.3-2_ppc64el.deb ... Unpacking python3 (3.6.3-2) ... Selecting previously unselected package bash-completion. Preparing to unpack .../01-bash-completion_1%3a2.1-4.3ubuntu1_all.deb ... Unpacking bash-completion (1:2.1-4.3ubuntu1) ... Selecting previously unselected package libxau6:ppc64el. Preparing to unpack .../02-libxau6_1%3a1.0.8-1_ppc64el.deb ... Unpacking libxau6:ppc64el (1:1.0.8-1) ... Selecting previously unselected package libbsd0:ppc64el. Preparing to unpack .../03-libbsd0_0.8.6-3_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.8.6-3) ... Selecting previously unselected package libxdmcp6:ppc64el. Preparing to unpack .../04-libxdmcp6_1%3a1.1.2-3_ppc64el.deb ... Unpacking libxdmcp6:ppc64el (1:1.1.2-3) ... Selecting previously unselected package libxcb1:ppc64el. Preparing to unpack .../05-libxcb1_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb1:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../06-libx11-data_2%3a1.6.4-3_all.deb ... Unpacking libx11-data (2:1.6.4-3) ... Selecting previously unselected package libx11-6:ppc64el. Preparing to unpack .../07-libx11-6_2%3a1.6.4-3_ppc64el.deb ... Unpacking libx11-6:ppc64el (2:1.6.4-3) ... Selecting previously unselected package libxext6:ppc64el. Preparing to unpack .../08-libxext6_2%3a1.3.3-1_ppc64el.deb ... Unpacking libxext6:ppc64el (2:1.3.3-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.22.3-9_ppc64el.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../10-bsdmainutils_9.0.14ubuntu1_ppc64el.deb ... Unpacking bsdmainutils (9.0.14ubuntu1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../11-libpipeline1_1.5.0-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.7.6.1-4_ppc64el.deb ... Unpacking man-db (2.7.6.1-4) ... Selecting previously unselected package libfreetype6:ppc64el. Preparing to unpack .../13-libfreetype6_2.8-0.2ubuntu2_ppc64el.deb ... Unpacking libfreetype6:ppc64el (2.8-0.2ubuntu2) ... Selecting previously unselected package ucf. Preparing to unpack .../14-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../15-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../16-fontconfig-config_2.12.6-0ubuntu1_all.deb ... Unpacking fontconfig-config (2.12.6-0ubuntu1) ... Selecting previously unselected package libfontconfig1:ppc64el. Preparing to unpack .../17-libfontconfig1_2.12.6-0ubuntu1_ppc64el.deb ... Unpacking libfontconfig1:ppc64el (2.12.6-0ubuntu1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../18-fontconfig_2.12.6-0ubuntu1_ppc64el.deb ... Unpacking fontconfig (2.12.6-0ubuntu1) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../19-fonts-lato_2.0-2_all.deb ... Unpacking fonts-lato (2.0-2) ... Selecting previously unselected package libjpeg-turbo8:ppc64el. Preparing to unpack .../20-libjpeg-turbo8_1.5.2-0ubuntu5_ppc64el.deb ... Unpacking libjpeg-turbo8:ppc64el (1.5.2-0ubuntu5) ... Selecting previously unselected package liblzo2-2:ppc64el. Preparing to unpack .../21-liblzo2-2_2.08-1.2_ppc64el.deb ... Unpacking liblzo2-2:ppc64el (2.08-1.2) ... Selecting previously unselected package x11-common. Preparing to unpack .../22-x11-common_1%3a7.7+19ubuntu3_all.deb ... Unpacking x11-common (1:7.7+19ubuntu3) ... Selecting previously unselected package libice6:ppc64el. Preparing to unpack .../23-libice6_2%3a1.0.9-2_ppc64el.deb ... Unpacking libice6:ppc64el (2:1.0.9-2) ... Selecting previously unselected package libsm6:ppc64el. Preparing to unpack .../24-libsm6_2%3a1.2.2-1_ppc64el.deb ... Unpacking libsm6:ppc64el (2:1.2.2-1) ... Selecting previously unselected package libxrender1:ppc64el. Preparing to unpack .../25-libxrender1_1%3a0.9.10-1_ppc64el.deb ... Unpacking libxrender1:ppc64el (1:0.9.10-1) ... Selecting previously unselected package libxft2:ppc64el. Preparing to unpack .../26-libxft2_2.3.2-1_ppc64el.deb ... Unpacking libxft2:ppc64el (2.3.2-1) ... Selecting previously unselected package libxinerama1:ppc64el. Preparing to unpack .../27-libxinerama1_2%3a1.1.3-1_ppc64el.deb ... Unpacking libxinerama1:ppc64el (2:1.1.3-1) ... Selecting previously unselected package libxshmfence1:ppc64el. Preparing to unpack .../28-libxshmfence1_1.2-1_ppc64el.deb ... Unpacking libxshmfence1:ppc64el (1.2-1) ... Selecting previously unselected package libxss1:ppc64el. Preparing to unpack .../29-libxss1_1%3a1.2.2-1_ppc64el.deb ... Unpacking libxss1:ppc64el (1:1.2.2-1) ... Selecting previously unselected package libxxf86dga1:ppc64el. Preparing to unpack .../30-libxxf86dga1_2%3a1.1.4-1_ppc64el.deb ... Unpacking libxxf86dga1:ppc64el (2:1.1.4-1) ... Selecting previously unselected package libxxf86vm1:ppc64el. Preparing to unpack .../31-libxxf86vm1_1%3a1.1.4-1_ppc64el.deb ... Unpacking libxxf86vm1:ppc64el (1:1.1.4-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../32-poppler-data_0.4.8-2_all.deb ... Unpacking poppler-data (0.4.8-2) ... Selecting previously unselected package libpython2.7-minimal:ppc64el. Preparing to unpack .../33-libpython2.7-minimal_2.7.14-2ubuntu2_ppc64el.deb ... Unpacking libpython2.7-minimal:ppc64el (2.7.14-2ubuntu2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../34-python2.7-minimal_2.7.14-2ubuntu2_ppc64el.deb ... Unpacking python2.7-minimal (2.7.14-2ubuntu2) ... Selecting previously unselected package python-minimal. Preparing to unpack .../35-python-minimal_2.7.14-2ubuntu1_ppc64el.deb ... Unpacking python-minimal (2.7.14-2ubuntu1) ... Selecting previously unselected package libpython2.7-stdlib:ppc64el. Preparing to unpack .../36-libpython2.7-stdlib_2.7.14-2ubuntu2_ppc64el.deb ... Unpacking libpython2.7-stdlib:ppc64el (2.7.14-2ubuntu2) ... Selecting previously unselected package python2.7. Preparing to unpack .../37-python2.7_2.7.14-2ubuntu2_ppc64el.deb ... Unpacking python2.7 (2.7.14-2ubuntu2) ... Selecting previously unselected package libpython-stdlib:ppc64el. Preparing to unpack .../38-libpython-stdlib_2.7.14-2ubuntu1_ppc64el.deb ... Unpacking libpython-stdlib:ppc64el (2.7.14-2ubuntu1) ... Setting up libpython2.7-minimal:ppc64el (2.7.14-2ubuntu2) ... Setting up python2.7-minimal (2.7.14-2ubuntu2) ... Setting up python-minimal (2.7.14-2ubuntu1) ... Selecting previously unselected package python. (Reading database ... 16439 files and directories currently installed.) Preparing to unpack .../000-python_2.7.14-2ubuntu1_ppc64el.deb ... Unpacking python (2.7.14-2ubuntu1) ... Selecting previously unselected package tex-common. Preparing to unpack .../001-tex-common_6.09_all.deb ... Unpacking tex-common (6.09) ... Selecting previously unselected package libjbig0:ppc64el. Preparing to unpack .../002-libjbig0_2.1-3.1_ppc64el.deb ... Unpacking libjbig0:ppc64el (2.1-3.1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.32-1_ppc64el.deb ... Unpacking libmagic-mgc (1:5.32-1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../004-libmagic1_1%3a5.32-1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.32-1) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.32-1_ppc64el.deb ... Unpacking file (1:5.32-1) ... Selecting previously unselected package libdbus-1-3:ppc64el. Preparing to unpack .../006-libdbus-1-3_1.12.2-1ubuntu1_ppc64el.deb ... Unpacking libdbus-1-3:ppc64el (1.12.2-1ubuntu1) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../007-libelf1_0.170-0.1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.170-0.1) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../008-libglib2.0-0_2.54.1-1ubuntu1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.54.1-1ubuntu1) ... Selecting previously unselected package libglib2.0-data. Preparing to unpack .../009-libglib2.0-data_2.54.1-1ubuntu1_all.deb ... Unpacking libglib2.0-data (2.54.1-1ubuntu1) ... Selecting previously unselected package libicu60:ppc64el. Preparing to unpack .../010-libicu60_60.1-1ubuntu2_ppc64el.deb ... Unpacking libicu60:ppc64el (60.1-1ubuntu2) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../011-libxml2_2.9.4+dfsg1-5.1ubuntu1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.4+dfsg1-5.1ubuntu1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../012-shared-mime-info_1.9-2_ppc64el.deb ... Unpacking shared-mime-info (1.9-2) ... Selecting previously unselected package xkb-data. Preparing to unpack .../013-xkb-data_2.19-1.1ubuntu1_all.deb ... Unpacking xkb-data (2.19-1.1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.19.8.1-4ubuntu1_ppc64el.deb ... Unpacking gettext-base (0.19.8.1-4ubuntu1) ... Selecting previously unselected package libgirepository-1.0-1:ppc64el. Preparing to unpack .../015-libgirepository-1.0-1_1.54.1-3_ppc64el.deb ... Unpacking libgirepository-1.0-1:ppc64el (1.54.1-3) ... Selecting previously unselected package gir1.2-glib-2.0:ppc64el. Preparing to unpack .../016-gir1.2-glib-2.0_1.54.1-3_ppc64el.deb ... Unpacking gir1.2-glib-2.0:ppc64el (1.54.1-3) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../017-libdrm-common_2.4.88-1_all.deb ... Unpacking libdrm-common (2.4.88-1) ... Selecting previously unselected package libdrm2:ppc64el. Preparing to unpack .../018-libdrm2_2.4.88-1_ppc64el.deb ... Unpacking libdrm2:ppc64el (2.4.88-1) ... Selecting previously unselected package libedit2:ppc64el. Preparing to unpack .../019-libedit2_3.1-20170329-1_ppc64el.deb ... Unpacking libedit2:ppc64el (3.1-20170329-1) ... Selecting previously unselected package libxmuu1:ppc64el. Preparing to unpack .../020-libxmuu1_2%3a1.1.2-2_ppc64el.deb ... Unpacking libxmuu1:ppc64el (2:1.1.2-2) ... Selecting previously unselected package xauth. Preparing to unpack .../021-xauth_1%3a1.0.10-1_ppc64el.deb ... Unpacking xauth (1:1.0.10-1) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../022-hicolor-icon-theme_0.17-1_all.deb ... Unpacking hicolor-icon-theme (0.17-1) ... Selecting previously unselected package libjpeg8:ppc64el. Preparing to unpack .../023-libjpeg8_8c-2ubuntu8_ppc64el.deb ... Unpacking libjpeg8:ppc64el (8c-2ubuntu8) ... Selecting previously unselected package libtiff5:ppc64el. Preparing to unpack .../024-libtiff5_4.0.8-6_ppc64el.deb ... Unpacking libtiff5:ppc64el (4.0.8-6) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../025-libgdk-pixbuf2.0-common_2.36.11-1_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.36.11-1) ... Selecting previously unselected package libgdk-pixbuf2.0-0:ppc64el. Preparing to unpack .../026-libgdk-pixbuf2.0-0_2.36.11-1_ppc64el.deb ... Unpacking libgdk-pixbuf2.0-0:ppc64el (2.36.11-1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../027-gtk-update-icon-cache_3.22.26-2ubuntu1_ppc64el.deb ... No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. Unpacking gtk-update-icon-cache (3.22.26-2ubuntu1) ... Selecting previously unselected package libpixman-1-0:ppc64el. Preparing to unpack .../028-libpixman-1-0_0.34.0-1_ppc64el.deb ... Unpacking libpixman-1-0:ppc64el (0.34.0-1) ... Selecting previously unselected package libxcb-render0:ppc64el. Preparing to unpack .../029-libxcb-render0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-render0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-shm0:ppc64el. Preparing to unpack .../030-libxcb-shm0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-shm0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libcairo2:ppc64el. Preparing to unpack .../031-libcairo2_1.15.8-2_ppc64el.deb ... Unpacking libcairo2:ppc64el (1.15.8-2) ... Selecting previously unselected package libcroco3:ppc64el. Preparing to unpack .../032-libcroco3_0.6.12-1_ppc64el.deb ... Unpacking libcroco3:ppc64el (0.6.12-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../033-libthai-data_0.1.27-1_all.deb ... Unpacking libthai-data (0.1.27-1) ... Selecting previously unselected package libdatrie1:ppc64el. Preparing to unpack .../034-libdatrie1_0.2.10-5_ppc64el.deb ... Unpacking libdatrie1:ppc64el (0.2.10-5) ... Selecting previously unselected package libthai0:ppc64el. Preparing to unpack .../035-libthai0_0.1.27-1_ppc64el.deb ... Unpacking libthai0:ppc64el (0.1.27-1) ... Selecting previously unselected package libpango-1.0-0:ppc64el. Preparing to unpack .../036-libpango-1.0-0_1.40.13-2_ppc64el.deb ... Unpacking libpango-1.0-0:ppc64el (1.40.13-2) ... Selecting previously unselected package libgraphite2-3:ppc64el. Preparing to unpack .../037-libgraphite2-3_1.3.10-6_ppc64el.deb ... Unpacking libgraphite2-3:ppc64el (1.3.10-6) ... Selecting previously unselected package libharfbuzz0b:ppc64el. Preparing to unpack .../038-libharfbuzz0b_1.7.1-1_ppc64el.deb ... Unpacking libharfbuzz0b:ppc64el (1.7.1-1) ... Selecting previously unselected package libpangoft2-1.0-0:ppc64el. Preparing to unpack .../039-libpangoft2-1.0-0_1.40.13-2_ppc64el.deb ... Unpacking libpangoft2-1.0-0:ppc64el (1.40.13-2) ... Selecting previously unselected package libpangocairo-1.0-0:ppc64el. Preparing to unpack .../040-libpangocairo-1.0-0_1.40.13-2_ppc64el.deb ... Unpacking libpangocairo-1.0-0:ppc64el (1.40.13-2) ... Selecting previously unselected package librsvg2-2:ppc64el. Preparing to unpack .../041-librsvg2-2_2.40.18-2_ppc64el.deb ... Unpacking librsvg2-2:ppc64el (2.40.18-2) ... Selecting previously unselected package librsvg2-common:ppc64el. Preparing to unpack .../042-librsvg2-common_2.40.18-2_ppc64el.deb ... Unpacking librsvg2-common:ppc64el (2.40.18-2) ... Selecting previously unselected package humanity-icon-theme. Preparing to unpack .../043-humanity-icon-theme_0.6.13_all.deb ... Unpacking humanity-icon-theme (0.6.13) ... Selecting previously unselected package ubuntu-mono. Preparing to unpack .../044-ubuntu-mono_16.10+18.04.20171115.1-0ubuntu1_all.deb ... Unpacking ubuntu-mono (16.10+18.04.20171115.1-0ubuntu1) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../045-adwaita-icon-theme_3.26.1-1ubuntu1_all.deb ... Unpacking adwaita-icon-theme (3.26.1-1ubuntu1) ... Selecting previously unselected package libsigsegv2:ppc64el. Preparing to unpack .../046-libsigsegv2_2.11-1_ppc64el.deb ... Unpacking libsigsegv2:ppc64el (2.11-1) ... Selecting previously unselected package m4. Preparing to unpack .../047-m4_1.4.18-1_ppc64el.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../048-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../049-autotools-dev_20161112.1+nmu1_all.deb ... Unpacking autotools-dev (20161112.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../050-automake_1%3a1.15.1-3ubuntu1_all.deb ... Unpacking automake (1:1.15.1-3ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../051-autopoint_0.19.8.1-4ubuntu1_all.deb ... Unpacking autopoint (0.19.8.1-4ubuntu1) ... Selecting previously unselected package libbison-dev:ppc64el. Preparing to unpack .../052-libbison-dev_2%3a3.0.4.dfsg-1build1_ppc64el.deb ... Unpacking libbison-dev:ppc64el (2:3.0.4.dfsg-1build1) ... Selecting previously unselected package bison. Preparing to unpack .../053-bison_2%3a3.0.4.dfsg-1build1_ppc64el.deb ... Unpacking bison (2:3.0.4.dfsg-1build1) ... Selecting previously unselected package java-common. Preparing to unpack .../054-java-common_0.59ubuntu1_all.deb ... Unpacking java-common (0.59ubuntu1) ... Selecting previously unselected package libavahi-common-data:ppc64el. Preparing to unpack .../055-libavahi-common-data_0.6.32-1ubuntu1_ppc64el.deb ... Unpacking libavahi-common-data:ppc64el (0.6.32-1ubuntu1) ... Selecting previously unselected package libavahi-common3:ppc64el. Preparing to unpack .../056-libavahi-common3_0.6.32-1ubuntu1_ppc64el.deb ... Unpacking libavahi-common3:ppc64el (0.6.32-1ubuntu1) ... Selecting previously unselected package libavahi-client3:ppc64el. Preparing to unpack .../057-libavahi-client3_0.6.32-1ubuntu1_ppc64el.deb ... Unpacking libavahi-client3:ppc64el (0.6.32-1ubuntu1) ... Selecting previously unselected package libcups2:ppc64el. Preparing to unpack .../058-libcups2_2.2.6-2_ppc64el.deb ... Unpacking libcups2:ppc64el (2.2.6-2) ... Selecting previously unselected package liblcms2-2:ppc64el. Preparing to unpack .../059-liblcms2-2_2.8-4_ppc64el.deb ... Unpacking liblcms2-2:ppc64el (2.8-4) ... Selecting previously unselected package libnspr4:ppc64el. Preparing to unpack .../060-libnspr4_2%3a4.16-1ubuntu2_ppc64el.deb ... Unpacking libnspr4:ppc64el (2:4.16-1ubuntu2) ... Selecting previously unselected package libnss3:ppc64el. Preparing to unpack .../061-libnss3_2%3a3.32-1ubuntu3_ppc64el.deb ... Unpacking libnss3:ppc64el (2:3.32-1ubuntu3) ... Selecting previously unselected package libpcsclite1:ppc64el. Preparing to unpack .../062-libpcsclite1_1.8.22-1ubuntu1_ppc64el.deb ... Unpacking libpcsclite1:ppc64el (1.8.22-1ubuntu1) ... Selecting previously unselected package libxi6:ppc64el. Preparing to unpack .../063-libxi6_2%3a1.7.9-1_ppc64el.deb ... Unpacking libxi6:ppc64el (2:1.7.9-1) ... Selecting previously unselected package libxtst6:ppc64el. Preparing to unpack .../064-libxtst6_2%3a1.2.3-1_ppc64el.deb ... Unpacking libxtst6:ppc64el (2:1.2.3-1) ... Selecting previously unselected package openjdk-9-jre-headless:ppc64el. Preparing to unpack .../065-openjdk-9-jre-headless_9.0.1+11-1_ppc64el.deb ... Unpacking openjdk-9-jre-headless:ppc64el (9.0.1+11-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../066-ca-certificates-java_20170930_all.deb ... Unpacking ca-certificates-java (20170930) ... Selecting previously unselected package libtool. Preparing to unpack .../067-libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../068-dh-autoreconf_15_all.deb ... Unpacking dh-autoreconf (15) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../069-libarchive-zip-perl_1.59-1_all.deb ... Unpacking libarchive-zip-perl (1.59-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../070-libfile-stripnondeterminism-perl_0.040-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.040-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../071-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../072-dh-strip-nondeterminism_0.040-1_all.deb ... Unpacking dh-strip-nondeterminism (0.040-1) ... Selecting previously unselected package gettext. Preparing to unpack .../073-gettext_0.19.8.1-4ubuntu1_ppc64el.deb ... Unpacking gettext (0.19.8.1-4ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../074-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../075-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../076-debhelper_10.10.9ubuntu1_all.deb ... Unpacking debhelper (10.10.9ubuntu1) ... Selecting previously unselected package fonts-adf-accanthis. Preparing to unpack .../077-fonts-adf-accanthis_0.20110505-1_all.deb ... Unpacking fonts-adf-accanthis (0.20110505-1) ... Selecting previously unselected package fonts-adf-gillius. Preparing to unpack .../078-fonts-adf-gillius_0.20110505-1_all.deb ... Unpacking fonts-adf-gillius (0.20110505-1) ... Selecting previously unselected package fonts-adf-universalis. Preparing to unpack .../079-fonts-adf-universalis_0.20110505-1_all.deb ... Unpacking fonts-adf-universalis (0.20110505-1) ... Selecting previously unselected package fonts-cabin. Preparing to unpack .../080-fonts-cabin_1.5-2_all.deb ... Unpacking fonts-cabin (1.5-2) ... Selecting previously unselected package fonts-comfortaa. Preparing to unpack .../081-fonts-comfortaa_3.001-1_all.deb ... Unpacking fonts-comfortaa (3.001-1) ... Selecting previously unselected package fonts-croscore. Preparing to unpack .../082-fonts-croscore_20171026-2_all.deb ... Unpacking fonts-croscore (20171026-2) ... Selecting previously unselected package fonts-crosextra-caladea. Preparing to unpack .../083-fonts-crosextra-caladea_20130214-2_all.deb ... Unpacking fonts-crosextra-caladea (20130214-2) ... Selecting previously unselected package fonts-crosextra-carlito. Preparing to unpack .../084-fonts-crosextra-carlito_20130920-1_all.deb ... Unpacking fonts-crosextra-carlito (20130920-1) ... Selecting previously unselected package fonts-dejavu-extra. Preparing to unpack .../085-fonts-dejavu-extra_2.37-1_all.deb ... Unpacking fonts-dejavu-extra (2.37-1) ... Selecting previously unselected package fonts-ebgaramond. Preparing to unpack .../086-fonts-ebgaramond_0.016-1_all.deb ... Unpacking fonts-ebgaramond (0.016-1) ... Selecting previously unselected package fonts-ebgaramond-extra. Preparing to unpack .../087-fonts-ebgaramond-extra_0.016-1_all.deb ... Unpacking fonts-ebgaramond-extra (0.016-1) ... Selecting previously unselected package fonts-font-awesome. Preparing to unpack .../088-fonts-font-awesome_4.7.0~dfsg-3_all.deb ... Unpacking fonts-font-awesome (4.7.0~dfsg-3) ... Selecting previously unselected package fonts-freefont-otf. Preparing to unpack .../089-fonts-freefont-otf_20120503-7_all.deb ... Unpacking fonts-freefont-otf (20120503-7) ... Selecting previously unselected package fonts-freefont-ttf. Preparing to unpack .../090-fonts-freefont-ttf_20120503-7_all.deb ... Unpacking fonts-freefont-ttf (20120503-7) ... Selecting previously unselected package fonts-gfs-artemisia. Preparing to unpack .../091-fonts-gfs-artemisia_1.1-5_all.deb ... Unpacking fonts-gfs-artemisia (1.1-5) ... Selecting previously unselected package fonts-gfs-complutum. Preparing to unpack .../092-fonts-gfs-complutum_1.1-6_all.deb ... Unpacking fonts-gfs-complutum (1.1-6) ... Selecting previously unselected package fonts-gfs-didot. Preparing to unpack .../093-fonts-gfs-didot_1.1-6_all.deb ... Unpacking fonts-gfs-didot (1.1-6) ... Selecting previously unselected package fonts-gfs-neohellenic. Preparing to unpack .../094-fonts-gfs-neohellenic_1.1-6_all.deb ... Unpacking fonts-gfs-neohellenic (1.1-6) ... Selecting previously unselected package fonts-gfs-olga. Preparing to unpack .../095-fonts-gfs-olga_1.1-5_all.deb ... Unpacking fonts-gfs-olga (1.1-5) ... Selecting previously unselected package fonts-gfs-solomos. Preparing to unpack .../096-fonts-gfs-solomos_1.1-5_all.deb ... Unpacking fonts-gfs-solomos (1.1-5) ... Selecting previously unselected package fonts-junicode. Preparing to unpack .../097-fonts-junicode_1.001-1_all.deb ... Unpacking fonts-junicode (1.001-1) ... Selecting previously unselected package fonts-linuxlibertine. Preparing to unpack .../098-fonts-linuxlibertine_5.3.0-4_all.deb ... Unpacking fonts-linuxlibertine (5.3.0-4) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../099-fonts-lmodern_2.004.5-3_all.deb ... Unpacking fonts-lmodern (2.004.5-3) ... Selecting previously unselected package fonts-lobster. Preparing to unpack .../100-fonts-lobster_2.0-2_all.deb ... Unpacking fonts-lobster (2.0-2) ... Selecting previously unselected package fonts-lobstertwo. Preparing to unpack .../101-fonts-lobstertwo_2.0-2_all.deb ... Unpacking fonts-lobstertwo (2.0-2) ... Selecting previously unselected package fonts-noto-hinted. Preparing to unpack .../102-fonts-noto-hinted_20171026-2_all.deb ... Unpacking fonts-noto-hinted (20171026-2) ... Selecting previously unselected package fonts-oflb-asana-math. Preparing to unpack .../103-fonts-oflb-asana-math_000.907-6_all.deb ... Unpacking fonts-oflb-asana-math (000.907-6) ... Selecting previously unselected package fonts-roboto-hinted. Preparing to unpack .../104-fonts-roboto-hinted_2%3a0~20160106-2_all.deb ... Unpacking fonts-roboto-hinted (2:0~20160106-2) ... Selecting previously unselected package fonts-sil-gentium. Preparing to unpack .../105-fonts-sil-gentium_20081126%3a1.03-1_all.deb ... Unpacking fonts-sil-gentium (20081126:1.03-1) ... Selecting previously unselected package fonts-sil-gentium-basic. Preparing to unpack .../106-fonts-sil-gentium-basic_1.1-7_all.deb ... Unpacking fonts-sil-gentium-basic (1.1-7) ... Selecting previously unselected package fonts-sil-gentiumplus. Preparing to unpack .../107-fonts-sil-gentiumplus_5.000-1_all.deb ... Unpacking fonts-sil-gentiumplus (5.000-1) ... Selecting previously unselected package fonts-sil-gentiumplus-compact. Preparing to unpack .../108-fonts-sil-gentiumplus-compact_5.000-2_all.deb ... Unpacking fonts-sil-gentiumplus-compact (5.000-2) ... Selecting previously unselected package libgfortran4:ppc64el. Preparing to unpack .../109-libgfortran4_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libgfortran4:ppc64el (7.2.0-16ubuntu1) ... Selecting previously unselected package libgfortran-7-dev:ppc64el. Preparing to unpack .../110-libgfortran-7-dev_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking libgfortran-7-dev:ppc64el (7.2.0-16ubuntu1) ... Selecting previously unselected package gfortran-7. Preparing to unpack .../111-gfortran-7_7.2.0-16ubuntu1_ppc64el.deb ... Unpacking gfortran-7 (7.2.0-16ubuntu1) ... Selecting previously unselected package gfortran. Preparing to unpack .../112-gfortran_4%3a7.2.0-1ubuntu1_ppc64el.deb ... Unpacking gfortran (4:7.2.0-1ubuntu1) ... Selecting previously unselected package gir1.2-freedesktop:ppc64el. Preparing to unpack .../113-gir1.2-freedesktop_1.54.1-3_ppc64el.deb ... Unpacking gir1.2-freedesktop:ppc64el (1.54.1-3) ... Selecting previously unselected package gir1.2-harfbuzz-0.0. Preparing to unpack .../114-gir1.2-harfbuzz-0.0_1.7.1-1_ppc64el.deb ... Unpacking gir1.2-harfbuzz-0.0 (1.7.1-1) ... Selecting previously unselected package libpangoxft-1.0-0:ppc64el. Preparing to unpack .../115-libpangoxft-1.0-0_1.40.13-2_ppc64el.deb ... Unpacking libpangoxft-1.0-0:ppc64el (1.40.13-2) ... Selecting previously unselected package gir1.2-pango-1.0:ppc64el. Preparing to unpack .../116-gir1.2-pango-1.0_1.40.13-2_ppc64el.deb ... Unpacking gir1.2-pango-1.0:ppc64el (1.40.13-2) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../117-icu-devtools_60.1-1ubuntu2_ppc64el.deb ... Unpacking icu-devtools (60.1-1ubuntu2) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../118-libasound2-data_1.1.3-5_all.deb ... Unpacking libasound2-data (1.1.3-5) ... Selecting previously unselected package libasound2:ppc64el. Preparing to unpack .../119-libasound2_1.1.3-5_ppc64el.deb ... Unpacking libasound2:ppc64el (1.1.3-5) ... Selecting previously unselected package libatk1.0-data. Preparing to unpack .../120-libatk1.0-data_2.26.1-1_all.deb ... Unpacking libatk1.0-data (2.26.1-1) ... Selecting previously unselected package libatk1.0-0:ppc64el. Preparing to unpack .../121-libatk1.0-0_2.26.1-1_ppc64el.deb ... Unpacking libatk1.0-0:ppc64el (2.26.1-1) ... Selecting previously unselected package libatspi2.0-0:ppc64el. Preparing to unpack .../122-libatspi2.0-0_2.26.2-2_ppc64el.deb ... Unpacking libatspi2.0-0:ppc64el (2.26.2-2) ... Selecting previously unselected package libatk-bridge2.0-0:ppc64el. Preparing to unpack .../123-libatk-bridge2.0-0_2.26.1-1_ppc64el.deb ... Unpacking libatk-bridge2.0-0:ppc64el (2.26.1-1) ... Selecting previously unselected package libfontenc1:ppc64el. Preparing to unpack .../124-libfontenc1_1%3a1.1.3-1_ppc64el.deb ... Unpacking libfontenc1:ppc64el (1:1.1.3-1) ... Selecting previously unselected package libglapi-mesa:ppc64el. Preparing to unpack .../125-libglapi-mesa_17.2.4-0ubuntu2_ppc64el.deb ... Unpacking libglapi-mesa:ppc64el (17.2.4-0ubuntu2) ... Selecting previously unselected package libx11-xcb1:ppc64el. Preparing to unpack .../126-libx11-xcb1_2%3a1.6.4-3_ppc64el.deb ... Unpacking libx11-xcb1:ppc64el (2:1.6.4-3) ... Selecting previously unselected package libxcb-dri2-0:ppc64el. Preparing to unpack .../127-libxcb-dri2-0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-dri2-0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-dri3-0:ppc64el. Preparing to unpack .../128-libxcb-dri3-0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-dri3-0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-glx0:ppc64el. Preparing to unpack .../129-libxcb-glx0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-glx0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-present0:ppc64el. Preparing to unpack .../130-libxcb-present0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-present0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-sync1:ppc64el. Preparing to unpack .../131-libxcb-sync1_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-sync1:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxdamage1:ppc64el. Preparing to unpack .../132-libxdamage1_1%3a1.1.4-3_ppc64el.deb ... Unpacking libxdamage1:ppc64el (1:1.1.4-3) ... Selecting previously unselected package libxfixes3:ppc64el. Preparing to unpack .../133-libxfixes3_1%3a5.0.3-1_ppc64el.deb ... Unpacking libxfixes3:ppc64el (1:5.0.3-1) ... Selecting previously unselected package libdrm-amdgpu1:ppc64el. Preparing to unpack .../134-libdrm-amdgpu1_2.4.88-1_ppc64el.deb ... Unpacking libdrm-amdgpu1:ppc64el (2.4.88-1) ... Selecting previously unselected package libdrm-nouveau2:ppc64el. Preparing to unpack .../135-libdrm-nouveau2_2.4.88-1_ppc64el.deb ... Unpacking libdrm-nouveau2:ppc64el (2.4.88-1) ... Selecting previously unselected package libdrm-radeon1:ppc64el. Preparing to unpack .../136-libdrm-radeon1_2.4.88-1_ppc64el.deb ... Unpacking libdrm-radeon1:ppc64el (2.4.88-1) ... Selecting previously unselected package libllvm5.0:ppc64el. Preparing to unpack .../137-libllvm5.0_1%3a5.0-4_ppc64el.deb ... Unpacking libllvm5.0:ppc64el (1:5.0-4) ... Selecting previously unselected package libsensors4:ppc64el. Preparing to unpack .../138-libsensors4_1%3a3.4.0-4_ppc64el.deb ... Unpacking libsensors4:ppc64el (1:3.4.0-4) ... Selecting previously unselected package libgl1-mesa-dri:ppc64el. Preparing to unpack .../139-libgl1-mesa-dri_17.2.4-0ubuntu2_ppc64el.deb ... Unpacking libgl1-mesa-dri:ppc64el (17.2.4-0ubuntu2) ... Selecting previously unselected package libgl1-mesa-glx:ppc64el. Preparing to unpack .../140-libgl1-mesa-glx_17.2.4-0ubuntu2_ppc64el.deb ... Unpacking libgl1-mesa-glx:ppc64el (17.2.4-0ubuntu2) ... Selecting previously unselected package libxt6:ppc64el. Preparing to unpack .../141-libxt6_1%3a1.1.5-1_ppc64el.deb ... Unpacking libxt6:ppc64el (1:1.1.5-1) ... Selecting previously unselected package libxmu6:ppc64el. Preparing to unpack .../142-libxmu6_2%3a1.1.2-2_ppc64el.deb ... Unpacking libxmu6:ppc64el (2:1.1.2-2) ... Selecting previously unselected package libxpm4:ppc64el. Preparing to unpack .../143-libxpm4_1%3a3.5.12-1_ppc64el.deb ... Unpacking libxpm4:ppc64el (1:3.5.12-1) ... Selecting previously unselected package libxaw7:ppc64el. Preparing to unpack .../144-libxaw7_2%3a1.0.13-1_ppc64el.deb ... Unpacking libxaw7:ppc64el (2:1.0.13-1) ... Selecting previously unselected package libxcb-shape0:ppc64el. Preparing to unpack .../145-libxcb-shape0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-shape0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcomposite1:ppc64el. Preparing to unpack .../146-libxcomposite1_1%3a0.4.4-2_ppc64el.deb ... Unpacking libxcomposite1:ppc64el (1:0.4.4-2) ... Selecting previously unselected package libxrandr2:ppc64el. Preparing to unpack .../147-libxrandr2_2%3a1.5.1-1_ppc64el.deb ... Unpacking libxrandr2:ppc64el (2:1.5.1-1) ... Selecting previously unselected package libxv1:ppc64el. Preparing to unpack .../148-libxv1_2%3a1.0.11-1_ppc64el.deb ... Unpacking libxv1:ppc64el (2:1.0.11-1) ... Selecting previously unselected package x11-utils. Preparing to unpack .../149-x11-utils_7.7+3build1_ppc64el.deb ... Unpacking x11-utils (7.7+3build1) ... Selecting previously unselected package libatk-wrapper-java. Preparing to unpack .../150-libatk-wrapper-java_0.33.3-13_all.deb ... Unpacking libatk-wrapper-java (0.33.3-13) ... Selecting previously unselected package libatk-wrapper-java-jni:ppc64el. Preparing to unpack .../151-libatk-wrapper-java-jni_0.33.3-13_ppc64el.deb ... Unpacking libatk-wrapper-java-jni:ppc64el (0.33.3-13) ... Selecting previously unselected package libblas3:ppc64el. Preparing to unpack .../152-libblas3_3.7.1-4ubuntu1_ppc64el.deb ... Unpacking libblas3:ppc64el (3.7.1-4ubuntu1) ... Selecting previously unselected package libblas-dev:ppc64el. Preparing to unpack .../153-libblas-dev_3.7.1-4ubuntu1_ppc64el.deb ... Unpacking libblas-dev:ppc64el (3.7.1-4ubuntu1) ... Selecting previously unselected package libbz2-dev:ppc64el. Preparing to unpack .../154-libbz2-dev_1.0.6-8.1_ppc64el.deb ... Unpacking libbz2-dev:ppc64el (1.0.6-8.1) ... Selecting previously unselected package libcairo-gobject2:ppc64el. Preparing to unpack .../155-libcairo-gobject2_1.15.8-2_ppc64el.deb ... Unpacking libcairo-gobject2:ppc64el (1.15.8-2) ... Selecting previously unselected package libcairo-script-interpreter2:ppc64el. Preparing to unpack .../156-libcairo-script-interpreter2_1.15.8-2_ppc64el.deb ... Unpacking libcairo-script-interpreter2:ppc64el (1.15.8-2) ... Selecting previously unselected package libexpat1-dev:ppc64el. Preparing to unpack .../157-libexpat1-dev_2.2.3-2_ppc64el.deb ... Unpacking libexpat1-dev:ppc64el (2.2.3-2) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../158-zlib1g-dev_1%3a1.2.11.dfsg-0ubuntu2_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package libpng-dev:ppc64el. Preparing to unpack .../159-libpng-dev_1.6.34-1_ppc64el.deb ... Unpacking libpng-dev:ppc64el (1.6.34-1) ... Selecting previously unselected package libfreetype6-dev:ppc64el. Preparing to unpack .../160-libfreetype6-dev_2.8-0.2ubuntu2_ppc64el.deb ... Unpacking libfreetype6-dev:ppc64el (2.8-0.2ubuntu2) ... Selecting previously unselected package pkg-config. Preparing to unpack .../161-pkg-config_0.29.1-0ubuntu2_ppc64el.deb ... Unpacking pkg-config (0.29.1-0ubuntu2) ... Selecting previously unselected package libfontconfig1-dev:ppc64el. Preparing to unpack .../162-libfontconfig1-dev_2.12.6-0ubuntu1_ppc64el.deb ... Unpacking libfontconfig1-dev:ppc64el (2.12.6-0ubuntu1) ... Selecting previously unselected package xorg-sgml-doctools. Preparing to unpack .../163-xorg-sgml-doctools_1%3a1.11-1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1) ... Selecting previously unselected package x11proto-core-dev. Preparing to unpack .../164-x11proto-core-dev_7.0.31-1_all.deb ... Unpacking x11proto-core-dev (7.0.31-1) ... Selecting previously unselected package libxau-dev:ppc64el. Preparing to unpack .../165-libxau-dev_1%3a1.0.8-1_ppc64el.deb ... Unpacking libxau-dev:ppc64el (1:1.0.8-1) ... Selecting previously unselected package libxdmcp-dev:ppc64el. Preparing to unpack .../166-libxdmcp-dev_1%3a1.1.2-3_ppc64el.deb ... Unpacking libxdmcp-dev:ppc64el (1:1.1.2-3) ... Selecting previously unselected package x11proto-input-dev. Preparing to unpack .../167-x11proto-input-dev_2.3.2-1_all.deb ... Unpacking x11proto-input-dev (2.3.2-1) ... Selecting previously unselected package x11proto-kb-dev. Preparing to unpack .../168-x11proto-kb-dev_1.0.7-1_all.deb ... Unpacking x11proto-kb-dev (1.0.7-1) ... Selecting previously unselected package xtrans-dev. Preparing to unpack .../169-xtrans-dev_1.3.5-1_all.deb ... Unpacking xtrans-dev (1.3.5-1) ... Selecting previously unselected package libpthread-stubs0-dev:ppc64el. Preparing to unpack .../170-libpthread-stubs0-dev_0.3-4_ppc64el.deb ... Unpacking libpthread-stubs0-dev:ppc64el (0.3-4) ... Selecting previously unselected package libxcb1-dev:ppc64el. Preparing to unpack .../171-libxcb1-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb1-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libx11-dev:ppc64el. Preparing to unpack .../172-libx11-dev_2%3a1.6.4-3_ppc64el.deb ... Unpacking libx11-dev:ppc64el (2:1.6.4-3) ... Selecting previously unselected package x11proto-render-dev. Preparing to unpack .../173-x11proto-render-dev_2%3a0.11.1-2_all.deb ... Unpacking x11proto-render-dev (2:0.11.1-2) ... Selecting previously unselected package libxrender-dev:ppc64el. Preparing to unpack .../174-libxrender-dev_1%3a0.9.10-1_ppc64el.deb ... Unpacking libxrender-dev:ppc64el (1:0.9.10-1) ... Selecting previously unselected package x11proto-xext-dev. Preparing to unpack .../175-x11proto-xext-dev_7.3.0-1_all.deb ... Unpacking x11proto-xext-dev (7.3.0-1) ... Selecting previously unselected package libxext-dev:ppc64el. Preparing to unpack .../176-libxext-dev_2%3a1.3.3-1_ppc64el.deb ... Unpacking libxext-dev:ppc64el (2:1.3.3-1) ... Selecting previously unselected package libice-dev:ppc64el. Preparing to unpack .../177-libice-dev_2%3a1.0.9-2_ppc64el.deb ... Unpacking libice-dev:ppc64el (2:1.0.9-2) ... Selecting previously unselected package libsm-dev:ppc64el. Preparing to unpack .../178-libsm-dev_2%3a1.2.2-1_ppc64el.deb ... Unpacking libsm-dev:ppc64el (2:1.2.2-1) ... Selecting previously unselected package libpixman-1-dev. Preparing to unpack .../179-libpixman-1-dev_0.34.0-1_ppc64el.deb ... Unpacking libpixman-1-dev (0.34.0-1) ... Selecting previously unselected package libxcb-render0-dev:ppc64el. Preparing to unpack .../180-libxcb-render0-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-render0-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-shm0-dev:ppc64el. Preparing to unpack .../181-libxcb-shm0-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-shm0-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libglib2.0-bin. Preparing to unpack .../182-libglib2.0-bin_2.54.1-1ubuntu1_ppc64el.deb ... Unpacking libglib2.0-bin (2.54.1-1ubuntu1) ... Selecting previously unselected package libglib2.0-dev-bin. Preparing to unpack .../183-libglib2.0-dev-bin_2.54.1-1ubuntu1_ppc64el.deb ... Unpacking libglib2.0-dev-bin (2.54.1-1ubuntu1) ... Selecting previously unselected package libpcre16-3:ppc64el. Preparing to unpack .../184-libpcre16-3_2%3a8.39-5ubuntu3_ppc64el.deb ... Unpacking libpcre16-3:ppc64el (2:8.39-5ubuntu3) ... Selecting previously unselected package libpcre32-3:ppc64el. Preparing to unpack .../185-libpcre32-3_2%3a8.39-5ubuntu3_ppc64el.deb ... Unpacking libpcre32-3:ppc64el (2:8.39-5ubuntu3) ... Selecting previously unselected package libpcrecpp0v5:ppc64el. Preparing to unpack .../186-libpcrecpp0v5_2%3a8.39-5ubuntu3_ppc64el.deb ... Unpacking libpcrecpp0v5:ppc64el (2:8.39-5ubuntu3) ... Selecting previously unselected package libpcre3-dev:ppc64el. Preparing to unpack .../187-libpcre3-dev_2%3a8.39-5ubuntu3_ppc64el.deb ... Unpacking libpcre3-dev:ppc64el (2:8.39-5ubuntu3) ... Selecting previously unselected package libglib2.0-dev:ppc64el. Preparing to unpack .../188-libglib2.0-dev_2.54.1-1ubuntu1_ppc64el.deb ... Unpacking libglib2.0-dev:ppc64el (2.54.1-1ubuntu1) ... Selecting previously unselected package libcairo2-dev. Preparing to unpack .../189-libcairo2-dev_1.15.8-2_ppc64el.deb ... Unpacking libcairo2-dev (1.15.8-2) ... Selecting previously unselected package libcupsimage2:ppc64el. Preparing to unpack .../190-libcupsimage2_2.2.6-2_ppc64el.deb ... Unpacking libcupsimage2:ppc64el (2.2.6-2) ... Selecting previously unselected package libcurl3:ppc64el. Preparing to unpack .../191-libcurl3_7.55.1-1ubuntu3_ppc64el.deb ... Unpacking libcurl3:ppc64el (7.55.1-1ubuntu3) ... Selecting previously unselected package libcurl4-openssl-dev:ppc64el. Preparing to unpack .../192-libcurl4-openssl-dev_7.55.1-1ubuntu3_ppc64el.deb ... Unpacking libcurl4-openssl-dev:ppc64el (7.55.1-1ubuntu3) ... Selecting previously unselected package libgif7:ppc64el. Preparing to unpack .../193-libgif7_5.1.4-1_ppc64el.deb ... Unpacking libgif7:ppc64el (5.1.4-1) ... Selecting previously unselected package libgraphite2-dev:ppc64el. Preparing to unpack .../194-libgraphite2-dev_1.3.10-6_ppc64el.deb ... Unpacking libgraphite2-dev:ppc64el (1.3.10-6) ... Selecting previously unselected package libijs-0.35:ppc64el. Preparing to unpack .../195-libijs-0.35_0.35-12_ppc64el.deb ... Unpacking libijs-0.35:ppc64el (0.35-12) ... Selecting previously unselected package libjbig2dec0:ppc64el. Preparing to unpack .../196-libjbig2dec0_0.13-5_ppc64el.deb ... Unpacking libjbig2dec0:ppc64el (0.13-5) ... Selecting previously unselected package libpaper1:ppc64el. Preparing to unpack .../197-libpaper1_1.1.24+nmu5ubuntu1_ppc64el.deb ... Unpacking libpaper1:ppc64el (1.1.24+nmu5ubuntu1) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../198-libgs9-common_9.21~dfsg+1-0ubuntu3_all.deb ... Unpacking libgs9-common (9.21~dfsg+1-0ubuntu3) ... Selecting previously unselected package libgs9:ppc64el. Preparing to unpack .../199-libgs9_9.21~dfsg+1-0ubuntu3_ppc64el.deb ... Unpacking libgs9:ppc64el (9.21~dfsg+1-0ubuntu3) ... Selecting previously unselected package libgtk2.0-common. Preparing to unpack .../200-libgtk2.0-common_2.24.31-2ubuntu1_all.deb ... Unpacking libgtk2.0-common (2.24.31-2ubuntu1) ... Selecting previously unselected package libxcursor1:ppc64el. Preparing to unpack .../201-libxcursor1_1%3a1.1.14-3ubuntu1_ppc64el.deb ... Unpacking libxcursor1:ppc64el (1:1.1.14-3ubuntu1) ... Selecting previously unselected package libgtk2.0-0:ppc64el. Preparing to unpack .../202-libgtk2.0-0_2.24.31-2ubuntu1_ppc64el.deb ... Unpacking libgtk2.0-0:ppc64el (2.24.31-2ubuntu1) ... Selecting previously unselected package libharfbuzz-icu0:ppc64el. Preparing to unpack .../203-libharfbuzz-icu0_1.7.1-1_ppc64el.deb ... Unpacking libharfbuzz-icu0:ppc64el (1.7.1-1) ... Selecting previously unselected package libharfbuzz-gobject0:ppc64el. Preparing to unpack .../204-libharfbuzz-gobject0_1.7.1-1_ppc64el.deb ... Unpacking libharfbuzz-gobject0:ppc64el (1.7.1-1) ... Selecting previously unselected package libicu-dev. Preparing to unpack .../205-libicu-dev_60.1-1ubuntu2_ppc64el.deb ... Unpacking libicu-dev (60.1-1ubuntu2) ... Selecting previously unselected package libharfbuzz-dev:ppc64el. Preparing to unpack .../206-libharfbuzz-dev_1.7.1-1_ppc64el.deb ... Unpacking libharfbuzz-dev:ppc64el (1.7.1-1) ... Selecting previously unselected package libjpeg-turbo8-dev:ppc64el. Preparing to unpack .../207-libjpeg-turbo8-dev_1.5.2-0ubuntu5_ppc64el.deb ... Unpacking libjpeg-turbo8-dev:ppc64el (1.5.2-0ubuntu5) ... Selecting previously unselected package libjpeg8-dev:ppc64el. Preparing to unpack .../208-libjpeg8-dev_8c-2ubuntu8_ppc64el.deb ... Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:ppc64el. Preparing to unpack .../209-libjpeg-dev_8c-2ubuntu8_ppc64el.deb ... Unpacking libjpeg-dev:ppc64el (8c-2ubuntu8) ... Selecting previously unselected package libkpathsea6:ppc64el. Preparing to unpack .../210-libkpathsea6_2017.20170613.44572-6build1_ppc64el.deb ... Unpacking libkpathsea6:ppc64el (2017.20170613.44572-6build1) ... Selecting previously unselected package liblapack3:ppc64el. Preparing to unpack .../211-liblapack3_3.7.1-4ubuntu1_ppc64el.deb ... Unpacking liblapack3:ppc64el (3.7.1-4ubuntu1) ... Selecting previously unselected package liblapack-dev:ppc64el. Preparing to unpack .../212-liblapack-dev_3.7.1-4ubuntu1_ppc64el.deb ... Unpacking liblapack-dev:ppc64el (3.7.1-4ubuntu1) ... Selecting previously unselected package libmime-charset-perl. Preparing to unpack .../213-libmime-charset-perl_1.012-2_all.deb ... Unpacking libmime-charset-perl (1.012-2) ... Selecting previously unselected package libtinfo-dev:ppc64el. Preparing to unpack .../214-libtinfo-dev_6.0+20160625-1ubuntu1_ppc64el.deb ... Unpacking libtinfo-dev:ppc64el (6.0+20160625-1ubuntu1) ... Selecting previously unselected package libncurses5-dev:ppc64el. Preparing to unpack .../215-libncurses5-dev_6.0+20160625-1ubuntu1_ppc64el.deb ... Unpacking libncurses5-dev:ppc64el (6.0+20160625-1ubuntu1) ... Selecting previously unselected package libxft-dev. Preparing to unpack .../216-libxft-dev_2.3.2-1_ppc64el.deb ... Unpacking libxft-dev (2.3.2-1) ... Selecting previously unselected package libpango1.0-dev. Preparing to unpack .../217-libpango1.0-dev_1.40.13-2_ppc64el.deb ... Unpacking libpango1.0-dev (1.40.13-2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../218-libpaper-utils_1.1.24+nmu5ubuntu1_ppc64el.deb ... Unpacking libpaper-utils (1.1.24+nmu5ubuntu1) ... Selecting previously unselected package libpoppler68:ppc64el. Preparing to unpack .../219-libpoppler68_0.57.0-2ubuntu5_ppc64el.deb ... Unpacking libpoppler68:ppc64el (0.57.0-2ubuntu5) ... Selecting previously unselected package libpotrace0. Preparing to unpack .../220-libpotrace0_1.14-2_ppc64el.deb ... Unpacking libpotrace0 (1.14-2) ... Selecting previously unselected package libptexenc1:ppc64el. Preparing to unpack .../221-libptexenc1_2017.20170613.44572-6build1_ppc64el.deb ... Unpacking libptexenc1:ppc64el (2017.20170613.44572-6build1) ... Selecting previously unselected package libreadline-dev:ppc64el. Preparing to unpack .../222-libreadline-dev_7.0-0ubuntu2_ppc64el.deb ... Unpacking libreadline-dev:ppc64el (7.0-0ubuntu2) ... Selecting previously unselected package libsombok3:ppc64el. Preparing to unpack .../223-libsombok3_2.4.0-1_ppc64el.deb ... Unpacking libsombok3:ppc64el (2.4.0-1) ... Selecting previously unselected package libsynctex1:ppc64el. Preparing to unpack .../224-libsynctex1_2017.20170613.44572-6build1_ppc64el.deb ... Unpacking libsynctex1:ppc64el (2017.20170613.44572-6build1) ... Selecting previously unselected package libtcl8.6:ppc64el. Preparing to unpack .../225-libtcl8.6_8.6.7+dfsg-1_ppc64el.deb ... Unpacking libtcl8.6:ppc64el (8.6.7+dfsg-1) ... Selecting previously unselected package libtexlua52:ppc64el. Preparing to unpack .../226-libtexlua52_2017.20170613.44572-6build1_ppc64el.deb ... Unpacking libtexlua52:ppc64el (2017.20170613.44572-6build1) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../227-libtext-unidecode-perl_1.30-1_all.deb ... Unpacking libtext-unidecode-perl (1.30-1) ... Selecting previously unselected package libjbig-dev:ppc64el. Preparing to unpack .../228-libjbig-dev_2.1-3.1_ppc64el.deb ... Unpacking libjbig-dev:ppc64el (2.1-3.1) ... Selecting previously unselected package liblzma-dev:ppc64el. Preparing to unpack .../229-liblzma-dev_5.2.2-1.3_ppc64el.deb ... Unpacking liblzma-dev:ppc64el (5.2.2-1.3) ... Selecting previously unselected package libtiffxx5:ppc64el. Preparing to unpack .../230-libtiffxx5_4.0.8-6_ppc64el.deb ... Unpacking libtiffxx5:ppc64el (4.0.8-6) ... Selecting previously unselected package libtiff5-dev:ppc64el. Preparing to unpack .../231-libtiff5-dev_4.0.8-6_ppc64el.deb ... Unpacking libtiff5-dev:ppc64el (4.0.8-6) ... Selecting previously unselected package libtk8.6:ppc64el. Preparing to unpack .../232-libtk8.6_8.6.7-1ubuntu1_ppc64el.deb ... Unpacking libtk8.6:ppc64el (8.6.7-1ubuntu1) ... Selecting previously unselected package libunicode-linebreak-perl. Preparing to unpack .../233-libunicode-linebreak-perl_0.0.20160702-1build2_ppc64el.deb ... Unpacking libunicode-linebreak-perl (0.0.20160702-1build2) ... Selecting previously unselected package libxfont1:ppc64el. Preparing to unpack .../234-libxfont1_1%3a1.5.2-4ubuntu2_ppc64el.deb ... Unpacking libxfont1:ppc64el (1:1.5.2-4ubuntu2) ... Selecting previously unselected package libxfont2:ppc64el. Preparing to unpack .../235-libxfont2_1%3a2.0.1-4ubuntu1_ppc64el.deb ... Unpacking libxfont2:ppc64el (1:2.0.1-4ubuntu1) ... Selecting previously unselected package libxkbfile1:ppc64el. Preparing to unpack .../236-libxkbfile1_1%3a1.0.9-2_ppc64el.deb ... Unpacking libxkbfile1:ppc64el (1:1.0.9-2) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../237-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../238-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../239-libxml-sax-perl_0.99+dfsg-2ubuntu1_all.deb ... Unpacking libxml-sax-perl (0.99+dfsg-2ubuntu1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../240-libxml-libxml-perl_2.0128+dfsg-5_ppc64el.deb ... Unpacking libxml-libxml-perl (2.0128+dfsg-5) ... Selecting previously unselected package x11proto-scrnsaver-dev. Preparing to unpack .../241-x11proto-scrnsaver-dev_1.2.2-1_all.deb ... Unpacking x11proto-scrnsaver-dev (1.2.2-1) ... Selecting previously unselected package libxss-dev:ppc64el. Preparing to unpack .../242-libxss-dev_1%3a1.2.2-1_ppc64el.deb ... Unpacking libxss-dev:ppc64el (1:1.2.2-1) ... Selecting previously unselected package libxt-dev:ppc64el. Preparing to unpack .../243-libxt-dev_1%3a1.1.5-1_ppc64el.deb ... Unpacking libxt-dev:ppc64el (1:1.1.5-1) ... Selecting previously unselected package libzzip-0-13:ppc64el. Preparing to unpack .../244-libzzip-0-13_0.13.62-3.1_ppc64el.deb ... Unpacking libzzip-0-13:ppc64el (0.13.62-3.1) ... Selecting previously unselected package mpack. Preparing to unpack .../245-mpack_1.6-8.2_ppc64el.deb ... Unpacking mpack (1.6-8.2) ... Selecting previously unselected package openjdk-9-jre:ppc64el. Preparing to unpack .../246-openjdk-9-jre_9.0.1+11-1_ppc64el.deb ... Unpacking openjdk-9-jre:ppc64el (9.0.1+11-1) ... Selecting previously unselected package openjdk-9-jdk-headless:ppc64el. Preparing to unpack .../247-openjdk-9-jdk-headless_9.0.1+11-1_ppc64el.deb ... Unpacking openjdk-9-jdk-headless:ppc64el (9.0.1+11-1) ... Selecting previously unselected package openjdk-9-jdk:ppc64el. Preparing to unpack .../248-openjdk-9-jdk_9.0.1+11-1_ppc64el.deb ... Unpacking openjdk-9-jdk:ppc64el (9.0.1+11-1) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../249-preview-latex-style_11.91-1ubuntu1_all.deb ... Unpacking preview-latex-style (11.91-1ubuntu1) ... Selecting previously unselected package t1utils. Preparing to unpack .../250-t1utils_1.41-2_ppc64el.deb ... Unpacking t1utils (1.41-2) ... Selecting previously unselected package tcl8.6. Preparing to unpack .../251-tcl8.6_8.6.7+dfsg-1_ppc64el.deb ... Unpacking tcl8.6 (8.6.7+dfsg-1) ... Selecting previously unselected package tcl8.6-dev:ppc64el. Preparing to unpack .../252-tcl8.6-dev_8.6.7+dfsg-1_ppc64el.deb ... Unpacking tcl8.6-dev:ppc64el (8.6.7+dfsg-1) ... Selecting previously unselected package texinfo. Preparing to unpack .../253-texinfo_6.5.0.dfsg.1-1_ppc64el.deb ... Unpacking texinfo (6.5.0.dfsg.1-1) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../254-texlive-binaries_2017.20170613.44572-6build1_ppc64el.deb ... Unpacking texlive-binaries (2017.20170613.44572-6build1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../255-xdg-utils_1.1.1-1ubuntu3_all.deb ... Unpacking xdg-utils (1.1.1-1ubuntu3) ... Selecting previously unselected package texlive-base. Preparing to unpack .../256-texlive-base_2017.20171128-1_all.deb ... Unpacking texlive-base (2017.20171128-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../257-texlive-latex-base_2017.20171128-1_all.deb ... Unpacking texlive-latex-base (2017.20171128-1) ... Selecting previously unselected package texlive-extra-utils. Preparing to unpack .../258-texlive-extra-utils_2017.20171128-1_all.deb ... Unpacking texlive-extra-utils (2017.20171128-1) ... Selecting previously unselected package fonts-stix. Preparing to unpack .../259-fonts-stix_1.1.1-4_all.deb ... Unpacking fonts-stix (1.1.1-4) ... Selecting previously unselected package texlive-fonts-extra. Preparing to unpack .../260-texlive-fonts-extra_2017.20171128-1_all.deb ... Unpacking texlive-fonts-extra (2017.20171128-1) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../261-texlive-fonts-recommended_2017.20171128-1_all.deb ... Unpacking texlive-fonts-recommended (2017.20171128-1) ... Selecting previously unselected package texlive-plain-generic. Preparing to unpack .../262-texlive-plain-generic_2017.20171128-1_all.deb ... Unpacking texlive-plain-generic (2017.20171128-1) ... Selecting previously unselected package texlive-generic-recommended. Preparing to unpack .../263-texlive-generic-recommended_2017.20171128-1_all.deb ... Unpacking texlive-generic-recommended (2017.20171128-1) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../264-texlive-latex-recommended_2017.20171128-1_all.deb ... Unpacking texlive-latex-recommended (2017.20171128-1) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../265-texlive-pictures_2017.20171128-1_all.deb ... Unpacking texlive-pictures (2017.20171128-1) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../266-texlive-latex-extra_2017.20171128-1_all.deb ... Unpacking texlive-latex-extra (2017.20171128-1) ... Selecting previously unselected package tk8.6. Preparing to unpack .../267-tk8.6_8.6.7-1ubuntu1_ppc64el.deb ... Unpacking tk8.6 (8.6.7-1ubuntu1) ... Selecting previously unselected package tk8.6-dev:ppc64el. Preparing to unpack .../268-tk8.6-dev_8.6.7-1ubuntu1_ppc64el.deb ... Unpacking tk8.6-dev:ppc64el (8.6.7-1ubuntu1) ... Selecting previously unselected package x11-xkb-utils. Preparing to unpack .../269-x11-xkb-utils_7.7+3_ppc64el.deb ... Unpacking x11-xkb-utils (7.7+3) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../270-xfonts-encodings_1%3a1.0.4-2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../271-xfonts-utils_1%3a7.7+4_ppc64el.deb ... Unpacking xfonts-utils (1:7.7+4) ... Selecting previously unselected package xfonts-base. Preparing to unpack .../272-xfonts-base_1%3a1.0.4+nmu1_all.deb ... Unpacking xfonts-base (1:1.0.4+nmu1) ... Selecting previously unselected package xserver-common. Preparing to unpack .../273-xserver-common_2%3a1.19.5-0ubuntu2_all.deb ... Unpacking xserver-common (2:1.19.5-0ubuntu2) ... Selecting previously unselected package xvfb. Preparing to unpack .../274-xvfb_2%3a1.19.5-0ubuntu2_ppc64el.deb ... Unpacking xvfb (2:1.19.5-0ubuntu2) ... Selecting previously unselected package sbuild-build-depends-r-base-dummy. Preparing to unpack .../275-sbuild-build-depends-r-base-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-r-base-dummy (0.invalid.0) ... Setting up libgs9-common (9.21~dfsg+1-0ubuntu3) ... Setting up libedit2:ppc64el (3.1-20170329-1) ... Setting up libkpathsea6:ppc64el (2017.20170613.44572-6build1) ... Setting up libtexlua52:ppc64el (2017.20170613.44572-6build1) ... Setting up libicu60:ppc64el (60.1-1ubuntu2) ... Setting up libgtk2.0-common (2.24.31-2ubuntu1) ... Setting up libbz2-dev:ppc64el (1.0.6-8.1) ... Setting up libsynctex1:ppc64el (2017.20170613.44572-6build1) ... Setting up libptexenc1:ppc64el (2017.20170613.44572-6build1) ... Setting up fonts-gfs-neohellenic (1.1-6) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up fonts-stix (1.1.1-4) ... Setting up fonts-comfortaa (3.001-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libgfortran4:ppc64el (7.2.0-16ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liblcms2-2:ppc64el (2.8-4) ... Setting up libjbig0:ppc64el (2.1-3.1) ... Setting up libpcsclite1:ppc64el (1.8.22-1ubuntu1) ... Setting up libsigsegv2:ppc64el (2.11-1) ... Setting up libpthread-stubs0-dev:ppc64el (0.3-4) ... Setting up libcurl3:ppc64el (7.55.1-1ubuntu3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up fonts-linuxlibertine (5.3.0-4) ... Setting up poppler-data (0.4.8-2) ... Setting up bash-completion (1:2.1-4.3ubuntu1) ... Setting up libelf1:ppc64el (0.170-0.1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:ppc64el (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up libasound2-data (1.1.3-5) ... Setting up libxshmfence1:ppc64el (1.2-1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up xkb-data (2.19-1.1ubuntu1) ... Setting up java-common (0.59ubuntu1) ... Setting up fonts-oflb-asana-math (000.907-6) ... Setting up libtinfo-dev:ppc64el (6.0+20160625-1ubuntu1) ... Setting up fonts-lobster (2.0-2) ... Setting up fonts-gfs-solomos (1.1-5) ... Setting up libgdk-pixbuf2.0-common (2.36.11-1) ... Setting up libllvm5.0:ppc64el (1:5.0-4) ... Setting up fonts-adf-accanthis (0.20110505-1) ... Setting up libdatrie1:ppc64el (0.2.10-5) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up fonts-freefont-otf (20120503-7) ... Setting up libgif7:ppc64el (5.1.4-1) ... Setting up libjpeg-turbo8:ppc64el (1.5.2-0ubuntu5) ... Setting up libpipeline1:ppc64el (1.5.0-1) ... Setting up x11proto-kb-dev (1.0.7-1) ... Setting up libglapi-mesa:ppc64el (17.2.4-0ubuntu2) ... Setting up m4 (1.4.18-1) ... Setting up fonts-crosextra-carlito (20130920-1) ... Setting up libbsd0:ppc64el (0.8.6-3) ... Setting up libnspr4:ppc64el (2:4.16-1ubuntu2) ... Setting up ucf (3.0036) ... Setting up fonts-ebgaramond-extra (0.016-1) ... Setting up libgirepository-1.0-1:ppc64el (1.54.1-3) ... Setting up fonts-font-awesome (4.7.0~dfsg-3) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-5.1ubuntu1) ... Setting up mpack (1.6-8.2) ... Setting up fonts-junicode (1.001-1) ... Setting up libfreetype6:ppc64el (2.8-0.2ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libasound2:ppc64el (1.1.3-5) ... Setting up libmagic1:ppc64el (1:5.32-1) ... Setting up libdrm-common (2.4.88-1) ... Setting up libgraphite2-3:ppc64el (1.3.10-6) ... Setting up libjbig-dev:ppc64el (2.1-3.1) ... Setting up libcroco3:ppc64el (0.6.12-1) ... Setting up fonts-lato (2.0-2) ... Setting up libncurses5-dev:ppc64el (6.0+20160625-1ubuntu1) ... Setting up fonts-gfs-complutum (1.1-6) ... Setting up fonts-cabin (1.5-2) ... Setting up libatk1.0-data (2.26.1-1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libjbig2dec0:ppc64el (0.13-5) ... Setting up libx11-xcb1:ppc64el (2:1.6.4-3) ... Setting up libpixman-1-0:ppc64el (0.34.0-1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up fonts-adf-gillius (0.20110505-1) ... Setting up libmime-charset-perl (1.012-2) ... Setting up libblas3:ppc64el (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up gir1.2-glib-2.0:ppc64el (1.54.1-3) ... Setting up libjpeg-turbo8-dev:ppc64el (1.5.2-0ubuntu5) ... Setting up libglib2.0-data (2.54.1-1ubuntu1) ... Setting up fonts-crosextra-caladea (20130214-2) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up fonts-noto-hinted (20171026-2) ... Setting up libpixman-1-dev (0.34.0-1) ... Setting up t1utils (1.41-2) ... Setting up libatk1.0-0:ppc64el (2.26.1-1) ... Setting up fonts-ebgaramond (0.016-1) ... Processing triggers for systemd (235-3ubuntu2) ... Setting up libgfortran-7-dev:ppc64el (7.2.0-16ubuntu1) ... Setting up libreadline-dev:ppc64el (7.0-0ubuntu2) ... Setting up fonts-croscore (20171026-2) ... Setting up libijs-0.35:ppc64el (0.35-12) ... Setting up libbison-dev:ppc64el (2:3.0.4.dfsg-1build1) ... Setting up libfontenc1:ppc64el (1:1.1.3-1) ... Setting up libexpat1-dev:ppc64el (2.2.3-2) ... Setting up libpotrace0 (1.14-2) ... Setting up libsensors4:ppc64el (1:3.4.0-4) ... Setting up shared-mime-info (1.9-2) ... Setting up gfortran-7 (7.2.0-16ubuntu1) ... Setting up libpcrecpp0v5:ppc64el (2:8.39-5ubuntu3) ... Setting up libpcre32-3:ppc64el (2:8.39-5ubuntu3) ... Setting up fonts-adf-universalis (0.20110505-1) ... Setting up icu-devtools (60.1-1ubuntu2) ... Setting up fonts-gfs-didot (1.1-6) ... Setting up libpcre16-3:ppc64el (2:8.39-5ubuntu3) ... Setting up libtcl8.6:ppc64el (8.6.7+dfsg-1) ... Setting up libthai-data (0.1.27-1) ... Setting up liblzma-dev:ppc64el (5.2.2-1.3) ... Setting up bison (2:3.0.4.dfsg-1build1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libxdmcp6:ppc64el (1:1.1.2-3) ... Setting up fonts-gfs-artemisia (1.1-5) ... Setting up bsdmainutils (9.0.14ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up fonts-dejavu-extra (2.37-1) ... Setting up fonts-freefont-ttf (20120503-7) ... Setting up x11-common (1:7.7+19ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libzzip-0-13:ppc64el (0.13.62-3.1) ... Setting up fonts-sil-gentium (20081126:1.03-1) ... Setting up xdg-utils (1.1.1-1ubuntu3) ... Processing triggers for ca-certificates (20170717) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Setting up hicolor-icon-theme (0.17-1) ... Setting up libglib2.0-bin (2.54.1-1ubuntu1) ... Setting up fonts-sil-gentium-basic (1.1-7) ... Setting up libgraphite2-dev:ppc64el (1.3.10-6) ... Setting up fonts-gfs-olga (1.1-5) ... Setting up libcurl4-openssl-dev:ppc64el (7.55.1-1ubuntu3) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:ppc64el (2.7.14-2ubuntu2) ... Setting up libxau6:ppc64el (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libmpdec2:ppc64el (2.4.2-1) ... Setting up libdbus-1-3:ppc64el (1.12.2-1ubuntu1) ... Setting up liblzo2-2:ppc64el (2.08-1.2) ... Setting up fonts-lmodern (2.004.5-3) ... Setting up libavahi-common-data:ppc64el (0.6.32-1ubuntu1) ... Setting up fonts-roboto-hinted (2:0~20160106-2) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up libpaper1:ppc64el (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up gfortran (4:7.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpython3.6-stdlib:ppc64el (3.6.3-1ubuntu1) ... Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up libpcre3-dev:ppc64el (2:8.39-5ubuntu3) ... Setting up fontconfig-config (2.12.6-0ubuntu1) ... Setting up python3.6 (3.6.3-1ubuntu1) ... Setting up tex-common (6.09) ... update-language: texlive-base not installed and configured, doing nothing! Setting up x11proto-core-dev (7.0.31-1) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libblas-dev:ppc64el (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up gir1.2-freedesktop:ppc64el (1.54.1-3) ... Setting up liblapack3:ppc64el (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up fonts-lobstertwo (2.0-2) ... Setting up python2.7 (2.7.14-2ubuntu2) ... Setting up libnss3:ppc64el (2:3.32-1ubuntu3) ... Setting up libxfont2:ppc64el (1:2.0.1-4ubuntu1) ... Setting up libharfbuzz0b:ppc64el (1.7.1-1) ... Setting up libtiff5:ppc64el (4.0.8-6) ... Setting up libxau-dev:ppc64el (1:1.0.8-1) ... Setting up preview-latex-style (11.91-1ubuntu1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:ppc64el (0.1.27-1) ... Setting up libicu-dev (60.1-1ubuntu2) ... Setting up file (1:5.32-1) ... Setting up xfonts-encodings (1:1.0.4-2) ... Setting up libxfont1:ppc64el (1:1.5.2-4ubuntu2) ... Setting up libdrm2:ppc64el (2.4.88-1) ... Setting up libpython-stdlib:ppc64el (2.7.14-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libxdmcp-dev:ppc64el (1:1.1.2-3) ... Setting up libjpeg8-dev:ppc64el (8c-2ubuntu8) ... Setting up gir1.2-harfbuzz-0.0 (1.7.1-1) ... Setting up libjpeg-dev:ppc64el (8c-2ubuntu8) ... Setting up tcl8.6 (8.6.7+dfsg-1) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:ppc64el (2:1.0.9-2) ... Setting up libtiffxx5:ppc64el (4.0.8-6) ... Setting up man-db (2.7.6.1-4) ... Not building database; man-db/auto-update is not 'true'. Setting up x11proto-scrnsaver-dev (1.2.2-1) ... Setting up libavahi-common3:ppc64el (0.6.32-1ubuntu1) ... Setting up libdrm-radeon1:ppc64el (2.4.88-1) ... Setting up libxml-libxml-perl (2.0128+dfsg-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libpng-dev:ppc64el (1.6.34-1) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libdrm-nouveau2:ppc64el (2.4.88-1) ... Setting up libxcb1:ppc64el (1.12-1ubuntu1) ... Setting up x11proto-input-dev (2.3.2-1) ... Setting up libharfbuzz-gobject0:ppc64el (1.7.1-1) ... Setting up python (2.7.14-2ubuntu1) ... Setting up tcl8.6-dev:ppc64el (8.6.7+dfsg-1) ... Setting up libsombok3:ppc64el (2.4.0-1) ... Setting up liblapack-dev:ppc64el (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up libtool (2.4.6-2) ... Setting up libpython3-stdlib:ppc64el (3.6.3-2) ... Setting up libxcb-present0:ppc64el (1.12-1ubuntu1) ... Setting up libfontconfig1:ppc64el (2.12.6-0ubuntu1) ... Setting up libxcb-dri2-0:ppc64el (1.12-1ubuntu1) ... Setting up libsm6:ppc64el (2:1.2.2-1) ... Setting up libxcb-dri3-0:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-glx0:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-render0:ppc64el (1.12-1ubuntu1) ... Setting up libharfbuzz-icu0:ppc64el (1.7.1-1) ... Setting up po-debconf (1.0.20) ... Setting up libdrm-amdgpu1:ppc64el (2.4.88-1) ... Setting up libtiff5-dev:ppc64el (4.0.8-6) ... Setting up libx11-6:ppc64el (2:1.6.4-3) ... Setting up libgl1-mesa-dri:ppc64el (17.2.4-0ubuntu2) ... Setting up xfonts-utils (1:7.7+4) ... Setting up libxmuu1:ppc64el (2:1.1.2-2) ... Setting up libxcb-sync1:ppc64el (1.12-1ubuntu1) ... Setting up x11proto-xext-dev (7.3.0-1) ... Setting up libfreetype6-dev:ppc64el (2.8-0.2ubuntu2) ... Setting up libice-dev:ppc64el (2:1.0.9-2) ... Setting up libunicode-linebreak-perl (0.0.20160702-1build2) ... Setting up libxcomposite1:ppc64el (1:0.4.4-2) ... Setting up libxcb-shm0:ppc64el (1.12-1ubuntu1) ... Setting up libxpm4:ppc64el (1:3.5.12-1) ... Setting up libxt6:ppc64el (1:1.1.5-1) ... Setting up libxcb-shape0:ppc64el (1.12-1ubuntu1) ... Setting up libxrender1:ppc64el (1:0.9.10-1) ... Setting up libxcb1-dev:ppc64el (1.12-1ubuntu1) ... Setting up libavahi-client3:ppc64el (0.6.32-1ubuntu1) ... Setting up texinfo (6.5.0.dfsg.1-1) ... Running mktexlsr. This may take some time. ... done. Setting up libx11-dev:ppc64el (2:1.6.4-3) ... Setting up libxft2:ppc64el (2.3.2-1) ... Setting up libpoppler68:ppc64el (0.57.0-2ubuntu5) ... Setting up xfonts-base (1:1.0.4+nmu1) ... Setting up fontconfig (2.12.6-0ubuntu1) ... Regenerating fonts cache... done. Setting up libcups2:ppc64el (2.2.6-2) ... Setting up libxkbfile1:ppc64el (1:1.0.9-2) ... Setting up libfontconfig1-dev:ppc64el (2.12.6-0ubuntu1) ... Setting up libsm-dev:ppc64el (2:1.2.2-1) ... Setting up libxdamage1:ppc64el (1:1.1.4-3) ... Setting up libxext6:ppc64el (2:1.3.3-1) ... Setting up libxfixes3:ppc64el (1:5.0.3-1) ... Setting up libatspi2.0-0:ppc64el (2.26.2-2) ... Setting up libxss1:ppc64el (1:1.2.2-1) ... Setting up libgdk-pixbuf2.0-0:ppc64el (2.36.11-1) ... Setting up libxcb-shm0-dev:ppc64el (1.12-1ubuntu1) ... Setting up libxrender-dev:ppc64el (1:0.9.10-1) ... Setting up libxtst6:ppc64el (2:1.2.3-1) ... Setting up libxmu6:ppc64el (2:1.1.2-2) ... Setting up xauth (1:1.0.10-1) ... Setting up libxcb-render0-dev:ppc64el (1.12-1ubuntu1) ... Setting up libcupsimage2:ppc64el (2.2.6-2) ... Setting up fonts-sil-gentiumplus-compact (5.000-2) ... Setting up libxft-dev (2.3.2-1) ... Setting up gtk-update-icon-cache (3.22.26-2ubuntu1) ... Setting up libxcursor1:ppc64el (1:1.1.14-3ubuntu1) ... Setting up libxxf86dga1:ppc64el (2:1.1.4-1) ... Setting up libxext-dev:ppc64el (2:1.3.3-1) ... Setting up libpango-1.0-0:ppc64el (1.40.13-2) ... Setting up libatk-bridge2.0-0:ppc64el (2.26.1-1) ... Setting up libxv1:ppc64el (2:1.0.11-1) ... Setting up fonts-sil-gentiumplus (5.000-1) ... Setting up libxxf86vm1:ppc64el (1:1.1.4-1) ... Setting up libgs9:ppc64el (9.21~dfsg+1-0ubuntu3) ... Setting up libxrandr2:ppc64el (2:1.5.1-1) ... Setting up libxi6:ppc64el (2:1.7.9-1) ... Setting up libxaw7:ppc64el (2:1.0.13-1) ... Setting up libcairo2:ppc64el (1.15.8-2) ... Setting up libxinerama1:ppc64el (2:1.1.3-1) ... Setting up libxt-dev:ppc64el (1:1.1.5-1) ... Setting up x11-xkb-utils (7.7+3) ... Setting up libcairo-script-interpreter2:ppc64el (1.15.8-2) ... Setting up libtk8.6:ppc64el (8.6.7-1ubuntu1) ... Setting up libcairo-gobject2:ppc64el (1.15.8-2) ... Setting up texlive-binaries (2017.20170613.44572-6build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libxss-dev:ppc64el (1:1.2.2-1) ... Setting up libpangoft2-1.0-0:ppc64el (1.40.13-2) ... Setting up libgl1-mesa-glx:ppc64el (17.2.4-0ubuntu2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/powerpc64le-linux-gnu_GL.conf (powerpc64le-linux-gnu_gl_conf) in auto mode Setting up texlive-base (2017.20171128-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up texlive-fonts-recommended (2017.20171128-1) ... Setting up texlive-plain-generic (2017.20171128-1) ... Setting up texlive-generic-recommended (2017.20171128-1) ... Setting up texlive-latex-base (2017.20171128-1) ... Setting up texlive-latex-recommended (2017.20171128-1) ... Setting up texlive-extra-utils (2017.20171128-1) ... Setting up xserver-common (2:1.19.5-0ubuntu2) ... Setting up tk8.6 (8.6.7-1ubuntu1) ... Setting up texlive-fonts-extra (2017.20171128-1) ... Setting up xvfb (2:1.19.5-0ubuntu2) ... Setting up texlive-pictures (2017.20171128-1) ... Setting up tk8.6-dev:ppc64el (8.6.7-1ubuntu1) ... Setting up libpangoxft-1.0-0:ppc64el (1.40.13-2) ... Setting up x11-utils (7.7+3build1) ... Setting up libpangocairo-1.0-0:ppc64el (1.40.13-2) ... Setting up gir1.2-pango-1.0:ppc64el (1.40.13-2) ... Setting up libatk-wrapper-java (0.33.3-13) ... Setting up librsvg2-2:ppc64el (2.40.18-2) ... Setting up texlive-latex-extra (2017.20171128-1) ... Setting up librsvg2-common:ppc64el (2.40.18-2) ... Setting up libatk-wrapper-java-jni:ppc64el (0.33.3-13) ... Setting up adwaita-icon-theme (3.26.1-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up openjdk-9-jre-headless:ppc64el (9.0.1+11-1) ... update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libgtk2.0-0:ppc64el (2.24.31-2ubuntu1) ... Setting up ca-certificates-java (20170930) ... Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:SecureSign_RootCA11.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:Izenpe.com.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:Certplus_Root_CA_G2.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:ISRG_Root_X1.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:OpenTrust_Root_CA_G3.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:OpenTrust_Root_CA_G1.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:AddTrust_External_Root.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:TÃœBÄ°TAK_UEKAE_Kök_Sertifika_Hizmet_SaÄŸlayıcısı_-_Sürüm_3.pem Adding debian:TÃœRKTRUST_Elektronik_Sertifika_Hizmet_SaÄŸlayıcısı_H5.pem Adding debian:ACEDICOM_Root.pem Adding debian:Certum_Root_CA.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:NetLock_Arany_=Class_Gold=_FÅ‘tanúsítvány.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Certplus_Root_CA_G1.pem Adding debian:Certigna.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:ACCVRAIZ1.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:Secure_Global_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:Taiwan_GRCA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:AffirmTrust_Networking.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:PSCProcert.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:EC-ACC.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:OpenTrust_Root_CA_G2.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:CNNIC_ROOT.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem done. Setting up dh-autoreconf (15) ... Setting up openjdk-9-jdk-headless:ppc64el (9.0.1+11-1) ... update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode Setting up python3 (3.6.3-2) ... Setting up libglib2.0-dev-bin (2.54.1-1ubuntu1) ... Setting up humanity-icon-theme (0.6.13) ... Setting up libglib2.0-dev:ppc64el (2.54.1-1ubuntu1) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up openjdk-9-jre:ppc64el (9.0.1+11-1) ... Setting up libharfbuzz-dev:ppc64el (1.7.1-1) ... Setting up dh-python (2.20170125) ... Setting up debhelper (10.10.9ubuntu1) ... Setting up libcairo2-dev (1.15.8-2) ... Setting up ubuntu-mono (16.10+18.04.20171115.1-0ubuntu1) ... Setting up openjdk-9-jdk:ppc64el (9.0.1+11-1) ... update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up libpango1.0-dev (1.40.13-2) ... Setting up sbuild-build-depends-r-base-dummy (0.invalid.0) ... (Reading database ... 115167 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for tex-common (6.09) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Processing triggers for libgdk-pixbuf2.0-0:ppc64el (2.36.11-1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Processing triggers for systemd (235-3ubuntu2) ... Processing triggers for ca-certificates (20170717) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-101-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.29.1-9ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-16ubuntu1 gcc-7_7.2.0-16ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-16ubuntu1 libstdc++6_7.2.0-16ubuntu1 linux-libc-dev_4.13.0-17.20 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 adwaita-icon-theme_3.26.1-1ubuntu1 apt_1.6~alpha5 apt-transport-https_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 bash-completion_1:2.1-4.3ubuntu1 binutils_2.29.1-9ubuntu1 binutils-common_2.29.1-9ubuntu1 binutils-powerpc64le-linux-gnu_2.29.1-9ubuntu1 bison_2:3.0.4.dfsg-1build1 bsdmainutils_9.0.14ubuntu1 bsdutils_1:2.30.2-0.1ubuntu1 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 ca-certificates-java_20170930 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-16ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.65 debhelper_10.10.9ubuntu1 debianutils_4.8.3 dh-autoreconf_15 dh-python_2.20170125 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.2-0.1ubuntu1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 fontconfig_2.12.6-0ubuntu1 fontconfig-config_2.12.6-0ubuntu1 fonts-adf-accanthis_0.20110505-1 fonts-adf-gillius_0.20110505-1 fonts-adf-universalis_0.20110505-1 fonts-cabin_1.5-2 fonts-comfortaa_3.001-1 fonts-croscore_20171026-2 fonts-crosextra-caladea_20130214-2 fonts-crosextra-carlito_20130920-1 fonts-dejavu-core_2.37-1 fonts-dejavu-extra_2.37-1 fonts-ebgaramond_0.016-1 fonts-ebgaramond-extra_0.016-1 fonts-font-awesome_4.7.0~dfsg-3 fonts-freefont-otf_20120503-7 fonts-freefont-ttf_20120503-7 fonts-gfs-artemisia_1.1-5 fonts-gfs-complutum_1.1-6 fonts-gfs-didot_1.1-6 fonts-gfs-neohellenic_1.1-6 fonts-gfs-olga_1.1-5 fonts-gfs-solomos_1.1-5 fonts-junicode_1.001-1 fonts-lato_2.0-2 fonts-linuxlibertine_5.3.0-4 fonts-lmodern_2.004.5-3 fonts-lobster_2.0-2 fonts-lobstertwo_2.0-2 fonts-noto-hinted_20171026-2 fonts-oflb-asana-math_000.907-6 fonts-roboto-hinted_2:0~20160106-2 fonts-sil-gentium_20081126:1.03-1 fonts-sil-gentium-basic_1.1-7 fonts-sil-gentiumplus_5.000-1 fonts-sil-gentiumplus-compact_5.000-2 fonts-stix_1.1.1-4 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-16ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-16ubuntu1 gcc-7-base_7.2.0-16ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gfortran_4:7.2.0-1ubuntu1 gfortran-7_7.2.0-16ubuntu1 gir1.2-freedesktop_1.54.1-3 gir1.2-glib-2.0_1.54.1-3 gir1.2-harfbuzz-0.0_1.7.1-1 gir1.2-pango-1.0_1.40.13-2 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gtk-update-icon-cache_3.22.26-2ubuntu1 gzip_1.6-5ubuntu1 hicolor-icon-theme_0.17-1 hostname_3.18 humanity-icon-theme_0.6.13 icu-devtools_60.1-1ubuntu2 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 java-common_0.59ubuntu1 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu18 libapt-pkg5.0_1.6~alpha5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-16ubuntu1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libasound2_1.1.3-5 libasound2-data_1.1.3-5 libassuan0_2.4.4-1 libatk-bridge2.0-0_2.26.1-1 libatk-wrapper-java_0.33.3-13 libatk-wrapper-java-jni_0.33.3-13 libatk1.0-0_2.26.1-1 libatk1.0-data_2.26.1-1 libatomic1_7.2.0-16ubuntu1 libatspi2.0-0_2.26.2-2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libavahi-client3_0.6.32-1ubuntu1 libavahi-common-data_0.6.32-1ubuntu1 libavahi-common3_0.6.32-1ubuntu1 libbinutils_2.29.1-9ubuntu1 libbison-dev_2:3.0.4.dfsg-1build1 libblas-dev_3.7.1-4ubuntu1 libblas3_3.7.1-4ubuntu1 libblkid1_2.30.2-0.1ubuntu1 libbsd0_0.8.6-3 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcairo-gobject2_1.15.8-2 libcairo-script-interpreter2_1.15.8-2 libcairo2_1.15.8-2 libcairo2-dev_1.15.8-2 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-16ubuntu1 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcups2_2.2.6-2 libcupsimage2_2.2.6-2 libcurl3_7.55.1-1ubuntu3 libcurl3-gnutls_7.55.1-1ubuntu3 libcurl4-openssl-dev_7.55.1-1ubuntu3 libdatrie1_0.2.10-5 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.19.0.4ubuntu1 libdrm-amdgpu1_2.4.88-1 libdrm-common_2.4.88-1 libdrm-nouveau2_2.4.88-1 libdrm-radeon1_2.4.88-1 libdrm2_2.4.88-1 libedit2_3.1-20170329-1 libelf1_0.170-0.1 libexpat1_2.2.3-2 libexpat1-dev_2.2.3-2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.2-0.1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libfontconfig1_2.12.6-0ubuntu1 libfontconfig1-dev_2.12.6-0ubuntu1 libfontenc1_1:1.1.3-1 libfreetype6_2.8-0.2ubuntu2 libfreetype6-dev_2.8-0.2ubuntu2 libgcc-7-dev_7.2.0-16ubuntu1 libgcc1_1:7.2.0-16ubuntu1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libgdk-pixbuf2.0-0_2.36.11-1 libgdk-pixbuf2.0-common_2.36.11-1 libgfortran-7-dev_7.2.0-16ubuntu1 libgfortran4_7.2.0-16ubuntu1 libgif7_5.1.4-1 libgirepository-1.0-1_1.54.1-3 libgl1-mesa-dri_17.2.4-0ubuntu2 libgl1-mesa-glx_17.2.4-0ubuntu2 libglapi-mesa_17.2.4-0ubuntu2 libglib2.0-0_2.54.1-1ubuntu1 libglib2.0-bin_2.54.1-1ubuntu1 libglib2.0-data_2.54.1-1ubuntu1 libglib2.0-dev_2.54.1-1ubuntu1 libglib2.0-dev-bin_2.54.1-1ubuntu1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-16ubuntu1 libgpg-error0_1.27-5 libgraphite2-3_1.3.10-6 libgraphite2-dev_1.3.10-6 libgs9_9.21~dfsg+1-0ubuntu3 libgs9-common_9.21~dfsg+1-0ubuntu3 libgssapi-krb5-2_1.15.1-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libgtk2.0-0_2.24.31-2ubuntu1 libgtk2.0-common_2.24.31-2ubuntu1 libharfbuzz-dev_1.7.1-1 libharfbuzz-gobject0_1.7.1-1 libharfbuzz-icu0_1.7.1-1 libharfbuzz0b_1.7.1-1 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhx509-5-heimdal_7.4.0.dfsg.1-2 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu-dev_60.1-1ubuntu2 libicu60_60.1-1ubuntu2 libidn11_1.33-2 libidn2-0_2.0.4-1 libijs-0.35_0.35-12 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-1 libitm1_7.2.0-16ubuntu1 libjbig-dev_2.1-3.1 libjbig0_2.1-3.1 libjbig2dec0_0.13-5 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_1.5.2-0ubuntu5 libjpeg-turbo8-dev_1.5.2-0ubuntu5 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9.2ubuntu1 libkmod2_24-1ubuntu2 libkpathsea6_2017.20170613.44572-6build1 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 liblapack-dev_3.7.1-4ubuntu1 liblapack3_3.7.1-4ubuntu1 liblcms2-2_2.8-4 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 libllvm5.0_1:5.0-4 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblsan0_7.2.0-16ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmime-charset-perl_1.012-2 libmount1_2.30.2-0.1ubuntu1 libmpc3_1.0.3-2 libmpdec2_2.4.2-1 libmpfr4_3.1.6-1 libncurses5_6.0+20160625-1ubuntu1 libncurses5-dev_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnpth0_1.5-3 libnspr4_2:4.16-1ubuntu2 libnss3_2:3.32-1ubuntu3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpango-1.0-0_1.40.13-2 libpango1.0-dev_1.40.13-2 libpangocairo-1.0-0_1.40.13-2 libpangoft2-1.0-0_1.40.13-2 libpangoxft-1.0-0_1.40.13-2 libpaper-utils_1.1.24+nmu5ubuntu1 libpaper1_1.1.24+nmu5ubuntu1 libpcre16-3_2:8.39-5ubuntu3 libpcre3_2:8.39-5ubuntu3 libpcre3-dev_2:8.39-5ubuntu3 libpcre32-3_2:8.39-5ubuntu3 libpcrecpp0v5_2:8.39-5ubuntu3 libpcsclite1_1.8.22-1ubuntu1 libperl5.26_5.26.1-3 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-1 libpixman-1-dev_0.34.0-1 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libpoppler68_0.57.0-2ubuntu5 libpotrace0_1.14-2 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.19.1-3 libptexenc1_2017.20170613.44572-6build1 libpthread-stubs0-dev_0.3-4 libpython-stdlib_2.7.14-2ubuntu1 libpython2.7-minimal_2.7.14-2ubuntu2 libpython2.7-stdlib_2.7.14-2ubuntu2 libpython3-stdlib_3.6.3-2 libpython3.6-minimal_3.6.3-1ubuntu1 libpython3.6-stdlib_3.6.3-1ubuntu1 libreadline-dev_7.0-0ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librsvg2-2_2.40.18-2 librsvg2-common_2.40.18-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsensors4_1:3.4.0-4 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsm-dev_2:1.2.2-1 libsm6_2:1.2.2-1 libsmartcols1_2.30.2-0.1ubuntu1 libsombok3_2.4.0-1 libsqlite3-0_3.21.0-1 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu14 libstdc++-7-dev_7.2.0-16ubuntu1 libstdc++6_7.2.0-16ubuntu1 libsynctex1_2017.20170613.44572-6build1 libsystemd0_235-3ubuntu2 libtasn1-6_4.12-3 libtcl8.6_8.6.7+dfsg-1 libtexlua52_2017.20170613.44572-6build1 libtext-unidecode-perl_1.30-1 libthai-data_0.1.27-1 libthai0_0.1.27-1 libtiff5_4.0.8-6 libtiff5-dev_4.0.8-6 libtiffxx5_4.0.8-6 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160625-1ubuntu1 libtinfo5_6.0+20160625-1ubuntu1 libtk8.6_8.6.7-1ubuntu1 libtool_2.4.6-2 libtsan0_7.2.0-16ubuntu1 libubsan0_7.2.0-16ubuntu1 libudev1_235-3ubuntu2 libunicode-linebreak-perl_0.0.20160702-1build2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1ubuntu1 libwind0-heimdal_7.4.0.dfsg.1-2 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libx11-dev_2:1.6.4-3 libx11-xcb1_2:1.6.4-3 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-dri2-0_1.12-1ubuntu1 libxcb-dri3-0_1.12-1ubuntu1 libxcb-glx0_1.12-1ubuntu1 libxcb-present0_1.12-1ubuntu1 libxcb-render0_1.12-1ubuntu1 libxcb-render0-dev_1.12-1ubuntu1 libxcb-shape0_1.12-1ubuntu1 libxcb-shm0_1.12-1ubuntu1 libxcb-shm0-dev_1.12-1ubuntu1 libxcb-sync1_1.12-1ubuntu1 libxcb1_1.12-1ubuntu1 libxcb1-dev_1.12-1ubuntu1 libxcomposite1_1:0.4.4-2 libxcursor1_1:1.1.14-3ubuntu1 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes3_1:5.0.3-1 libxfont1_1:1.5.2-4ubuntu2 libxfont2_1:2.0.1-4ubuntu1 libxft-dev_2.3.2-1 libxft2_2.3.2-1 libxi6_2:1.7.9-1 libxinerama1_2:1.1.3-1 libxkbfile1_1:1.0.9-2 libxml-libxml-perl_2.0128+dfsg-5 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_0.99+dfsg-2ubuntu1 libxml2_2.9.4+dfsg1-5.1ubuntu1 libxmu6_2:1.1.2-2 libxmuu1_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrandr2_2:1.5.1-1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence1_1.2-1 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libxtst6_2:1.2.3-1 libxv1_2:1.0.11-1 libxxf86dga1_2:1.1.4-1 libxxf86vm1_1:1.1.4-1 libzzip-0-13_0.13.62-3.1 linux-libc-dev_4.13.0-17.20 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-4 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.30.2-0.1ubuntu1 mpack_1.6-8.2 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openjdk-9-jdk_9.0.1+11-1 openjdk-9-jdk-headless_9.0.1+11-1 openjdk-9-jre_9.0.1+11-1 openjdk-9-jre-headless_9.0.1+11-1 openssl_1.0.2g-1ubuntu14 optipng_0.7.6-1ubuntu1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-3 perl-base_5.26.1-3 perl-modules-5.26_5.26.1-3 pinentry-curses_1.0.0-3 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 poppler-data_0.4.8-2 preview-latex-style_11.91-1ubuntu1 procps_2:3.3.12-1ubuntu2 python_2.7.14-2ubuntu1 python-minimal_2.7.14-2ubuntu1 python2.7_2.7.14-2ubuntu2 python2.7-minimal_2.7.14-2ubuntu2 python3_3.6.3-2 python3-minimal_3.6.3-2 python3.6_3.6.3-1ubuntu1 python3.6-minimal_3.6.3-1ubuntu1 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-base-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 shared-mime-info_1.9-2 systemd_235-3ubuntu2 systemd-sysv_235-3ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 t1utils_1.41-2 tar_1.29b-2 tcl8.6_8.6.7+dfsg-1 tcl8.6-dev_8.6.7+dfsg-1 tex-common_6.09 texinfo_6.5.0.dfsg.1-1 texlive-base_2017.20171128-1 texlive-binaries_2017.20170613.44572-6build1 texlive-extra-utils_2017.20171128-1 texlive-fonts-extra_2017.20171128-1 texlive-fonts-recommended_2017.20171128-1 texlive-generic-recommended_2017.20171128-1 texlive-latex-base_2017.20171128-1 texlive-latex-extra_2017.20171128-1 texlive-latex-recommended_2017.20171128-1 texlive-pictures_2017.20171128-1 texlive-plain-generic_2017.20171128-1 tk8.6_8.6.7-1ubuntu1 tk8.6-dev_8.6.7-1ubuntu1 tzdata_2017c-1 ubuntu-keyring_2016.10.27 ubuntu-mono_16.10+18.04.20171115.1-0ubuntu1 ucf_3.0036 util-linux_2.30.2-0.1ubuntu1 x11-common_1:7.7+19ubuntu3 x11-utils_7.7+3build1 x11-xkb-utils_7.7+3 x11proto-core-dev_7.0.31-1 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.3.0-1 xauth_1:1.0.10-1 xdg-utils_1.1.1-1ubuntu3 xfonts-base_1:1.0.4+nmu1 xfonts-encodings_1:1.0.4-2 xfonts-utils_1:7.7+4 xkb-data_2.19-1.1ubuntu1 xorg-sgml-doctools_1:1.11-1 xserver-common_2:1.19.5-0ubuntu2 xtrans-dev_1.3.5-1 xvfb_2:1.19.5-0ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Nov 30 13:04:55 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-base_3.4.3-1.dsc dpkg-source: info: extracting r-base in r-base-3.4.3 dpkg-source: info: unpacking r-base_3.4.3.orig.tar.gz dpkg-source: info: unpacking r-base_3.4.3-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13798102 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13798102 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13798102 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-base dpkg-buildpackage: info: source version 3.4.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build r-base-3.4.3 dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean *** clean *** dh_testdir dh_testroot rm -f configure-stamp \ build-stamp build-indep-stamp build-arch-stamp \ make-stamp make-arch-stamp make-indep-stamp \ install-indep-stamp install-arch-stamp \ check-stamp [ ! -f Makefile ] || /usr/bin/make distclean rm -f `find . -name "*~"` rm -rf debian/tmp debian/files* core debian/substvars rm -f doc/html/function.html doc/html/packages.html rm -f modules/*.so src/unix/Rscript dh_clean debian/rules build-arch *** configure *** #automake #autoconf dh_testdir R_TEXI2DVICMD=emulation \ R_PAPERSIZE=letter \ R_BROWSER=xdg-open \ R_GZIPCMD="/bin/gzip -n" \ PAGER=/usr/bin/pager \ PERL=/usr/bin/perl \ JAVA_HOME=/usr/lib/jvm/default-java \ R_UNZIPCMD=/usr/bin/unzip \ R_ZIPCMD=/usr/bin/zip \ R_PRINTCMD=/usr/bin/lpr \ LIBnn=lib \ AWK=/usr/bin/awk \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ FC=gfortran \ CFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ CXXFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ FFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong" \ FCFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong" \ CPPFLAGS= \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" \ FLIBS= \ rsharedir=/usr/share/R/share \ rincludedir=/usr/share/R/include \ rdocdir=/usr/share/R/doc \ ./configure --prefix=/usr \ --with-cairo \ --with-jpeglib \ --with-readline \ --with-tcltk \ --with-system-bzlib \ --with-system-pcre \ --with-system-zlib \ --mandir=/usr/share/man \ --infodir=/usr/share/info \ --datadir=/usr/share/R/share \ --includedir=/usr/share/R/include \ --with-blas \ --with-lapack \ --enable-R-profiling \ --enable-R-shlib \ --enable-memory-profiling \ --without-recommended-packages \ --build powerpc64le-linux-gnu configure: WARNING: unrecognized options: --with-system-bzlib, --with-system-pcre, --with-system-zlib checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... found checking for working autoconf... found checking for working automake... found checking for working autoheader... found checking whether ln -s works... yes checking for bison... bison -y checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for /usr/bin/pager... /usr/bin/pager checking for gtar... no checking for gnutar... no checking for tar... /bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... no checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /bin/gzip -n checking for bzip2... /bin/bzip2 using default browser ... xdg-open checking for acroread... no checking for acroread4... no checking for xdg-open... /usr/bin/xdg-open checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc -std=gnu99 needs -traditional... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking how to run the C preprocessor... gcc -std=gnu99 -E defining F77 to be gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g can compile C++ code... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc -std=gnu99 accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for gcc... gcc checking whether we are using the GNU Objective C compiler... no checking whether gcc accepts -g... no checking for Objective C++ compiler... trying some possibilities checking whether g++ can compile ObjC++... no checking whether can compile ObjC++... no no working ObjC++ compiler found checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc -std=gnu99... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert powerpc64le-unknown-linux-gnu file names to powerpc64le-unknown-linux-gnu format... func_convert_file_noop checking how to convert powerpc64le-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... /usr/bin/awk checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes checking if gcc -std=gnu99 static flag -static works... yes checking if gcc -std=gnu99 supports -c -o file.o... yes checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking whether rl_callback_sigcleanup exists and is declared... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for strings.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dl.h usability... no checking dl.h presence... no checking for dl.h... no checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking stdalign.h usability... yes checking stdalign.h presence... yes checking for stdalign.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for gcc -std=gnu99 option to accept ISO C99... none needed checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) none needed checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes checking for gcc -std=gnu99 option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/powerpc64le-linux-gnu/7 -L/usr/lib/gcc/powerpc64le-linux-gnu/7/../../../powerpc64le-linux-gnu -L/usr/lib/gcc/powerpc64le-linux-gnu/7/../../../../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/powerpc64le-linux-gnu/7/../../.. -lgfortran -lm checking how to get verbose linking output from gcc -std=gnu99... -v checking for C libraries of gcc -std=gnu99... -L/usr/lib/gcc/powerpc64le-linux-gnu/7 -L/usr/lib/gcc/powerpc64le-linux-gnu/7/../../../powerpc64le-linux-gnu -L/usr/lib/gcc/powerpc64le-linux-gnu/7/../../../../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/powerpc64le-linux-gnu/7/../../.. -lgcc_s checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc -std=gnu99 agree on int and double... yes checking whether gfortran and gcc -std=gnu99 agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking for g++ option to support OpenMP... -fopenmp checking whether we can compute ObjC Make dependencies... no checking for xmkmf... no checking whether g++ supports C++98 features by default... no checking whether g++ supports C++98 features with -std=gnu++98... yes checking whether g++ supports C++11 features by default... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features by default... yes checking whether g++ supports C++17 features by default... no checking whether g++ supports C++17 features with -std=gnu++17... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rint exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking sunmath.h usability... no checking sunmath.h presence... no checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... yes checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking whether mktime works correctly outside 1902-2037... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_... no checking for ATL_xerbla in -latlas... no checking for dgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for dgemm_ in -lblas... (cached) yes checking for dgemm_ in -lessl... no checking for dgemm_ in -lblas... (cached) yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... no checking for dpstrf_ in -llapack... yes checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether iswblank exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Intrinsic.h usability... yes checking X11/Intrinsic.h presence... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking X11/Xmu/Atoms.h usability... no checking X11/Xmu/Atoms.h presence... no checking for X11/Xmu/Atoms.h... no checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for tclConfig.sh... no checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh checking for tkConfig.sh... no checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh checking tcl.h usability... yes checking tcl.h presence... yes checking for tcl.h... yes checking tk.h usability... yes checking tk.h presence... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking rpc/types.h usability... yes checking rpc/types.h presence... yes checking for rpc/types.h... yes checking for rpc/xdr.h... yes checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking mmap support for zlib... yes checking for BZ2_bzlibVersion in -lbz2... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking lzma.h usability... yes checking lzma.h presence... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for pcre_fullinfo in -lpcre... yes checking pcre.h usability... yes checking pcre.h presence... yes checking for pcre.h... yes checking pcre/pcre.h usability... no checking pcre/pcre.h presence... no checking for pcre/pcre.h... no checking if PCRE version >= 8.20, < 10.0 and has UTF-8 support... yes checking if PCRE version >= 8.32... yes checking whether PCRE support suffices... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 7.55.1 checking curl/curl.h usability... yes checking curl/curl.h presence... yes checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.22.0... yes checking if libcurl supports https... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking tiffio.h usability... yes checking tiffio.h presence... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for sys/time.h... (cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for paperconf... /usr/bin/paperconf checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... -fopenmp checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc -std=gnu99... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking argz.h usability... yes checking argz.h presence... yes checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 3.0.4, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/f77_f2c config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --with-system-bzlib, --with-system-pcre, --with-system-zlib R is now configured for powerpc64le-unknown-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -std=gnu99 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g Fortran 77 compiler: gfortran -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong Default C++ compiler: g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g C++98 compiler: g++ -std=gnu++98 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g C++11 compiler: g++ -std=gnu++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g C++14 compiler: g++ -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g C++17 compiler: g++ -std=gnu++17 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g Fortran 90/95 compiler: gfortran -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong Obj-C compiler: Interfaces supported: X11, tcltk External libraries: readline, BLAS(generic), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling, memory profiling Capabilities skipped: Options not enabled: shared BLAS Recommended packages: no touch configure-stamp *** make-arch *** /usr/bin/make CFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ CXXFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ FFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong" \ FCFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong" \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" \ PKG_BUILT_STAMP="""" \ R_GZIPCMD="/bin/gzip -n" \ R make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' creating src/scripts/R.fe make[4]: Entering directory '/<>/src/scripts' mkdir -p -- ../../bin make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' mkdir -p -- ../../include make[4]: Entering directory '/<>/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c making xmalloc.d from xmalloc.c make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regerror.c -o regerror.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regexec.c -o regexec.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[4]: Entering directory '/<>/src/appl' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interv.c -o interv.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c maxcol.c -o maxcol.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uncmin.c -o uncmin.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dchdc.f -o dchdc.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dpbfa.f -o dpbfa.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dpbsl.f -o dpbsl.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dpoco.f -o dpoco.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dpodi.f -o dpodi.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dpofa.f -o dpofa.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dposl.f -o dposl.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dqrdc.f -o dqrdc.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dqrls.f -o dqrls.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dqrsl.f -o dqrsl.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dqrutl.f -o dqrutl.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dsvdc.f -o dsvdc.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dtrco.f -o dtrco.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[4]: Leaving directory '/<>/src/appl' make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[4]: Entering directory '/<>/src/nmath' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mlutils.c -o mlutils.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c d1mach.c -o d1mach.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c i1mach.c -o i1mach.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fmax2.c -o fmax2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fmin2.c -o fmin2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fprec.c -o fprec.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fround.c -o fround.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ftrunc.c -o ftrunc.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sign.c -o sign.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fsign.c -o fsign.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imax2.c -o imax2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imin2.c -o imin2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chebyshev.c -o chebyshev.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c log1p.c -o log1p.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c expm1.c -o expm1.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lgammacor.c -o lgammacor.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gammalims.c -o gammalims.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stirlerr.c -o stirlerr.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bd0.c -o bd0.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gamma.c -o gamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lgamma.c -o lgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gamma_cody.c -o gamma_cody.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c beta.c -o beta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lbeta.c -o lbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c polygamma.c -o polygamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cospi.c -o cospi.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_i.c -o bessel_i.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_j.c -o bessel_j.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_k.c -o bessel_k.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_y.c -o bessel_y.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c choose.c -o choose.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c snorm.c -o snorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sexp.c -o sexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgamma.c -o dgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pgamma.c -o pgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qgamma.c -o qgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rgamma.c -o rgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dbeta.c -o dbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbeta.c -o pbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qbeta.c -o qbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbeta.c -o rbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dunif.c -o dunif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c punif.c -o punif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qunif.c -o qunif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c runif.c -o runif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnorm.c -o dnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnorm.c -o pnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnorm.c -o qnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnorm.c -o rnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dlnorm.c -o dlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plnorm.c -o plnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qlnorm.c -o qlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlnorm.c -o rlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c df.c -o df.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pf.c -o pf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qf.c -o qf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rf.c -o rf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnf.c -o dnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dt.c -o dt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pt.c -o pt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qt.c -o qt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rt.c -o rt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnt.c -o dnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dchisq.c -o dchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pchisq.c -o pchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qchisq.c -o qchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rchisq.c -o rchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnchisq.c -o rnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dbinom.c -o dbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbinom.c -o pbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qbinom.c -o qbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbinom.c -o rbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rmultinom.c -o rmultinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dcauchy.c -o dcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pcauchy.c -o pcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qcauchy.c -o qcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcauchy.c -o rcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dexp.c -o dexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pexp.c -o pexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qexp.c -o qexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rexp.c -o rexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgeom.c -o dgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pgeom.c -o pgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qgeom.c -o qgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rgeom.c -o rgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dhyper.c -o dhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c phyper.c -o phyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qhyper.c -o qhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rhyper.c -o rhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnbinom.c -o dnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnbinom.c -o pnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnbinom.c -o qnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnbinom.c -o rnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dpois.c -o dpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ppois.c -o ppois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qpois.c -o qpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rpois.c -o rpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dweibull.c -o dweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pweibull.c -o pweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qweibull.c -o qweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rweibull.c -o rweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dlogis.c -o dlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plogis.c -o plogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qlogis.c -o qlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlogis.c -o rlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnchisq.c -o dnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnchisq.c -o pnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnchisq.c -o qnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnbeta.c -o dnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnbeta.c -o pnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnbeta.c -o qnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnf.c -o pnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnt.c -o pnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnf.c -o qnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnt.c -o qnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ptukey.c -o ptukey.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qtukey.c -o qtukey.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c toms708.c -o toms708.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wilcox.c -o wilcox.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[4]: Entering directory '/<>/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rembedded.c -o Rembedded.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dynload.c -o dynload.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c system.c -o system.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sys-unix.c -o sys-unix.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sys-std.c -o sys-std.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[4]: Entering directory '/<>/src/main' gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CommandLineArgs.c -o CommandLineArgs.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rdynload.c -o Rdynload.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Renviron.c -o Renviron.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RNG.c -o RNG.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agrep.c -o agrep.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c apply.c -o apply.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arithmetic.c -o arithmetic.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attrib.c -o attrib.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c builtin.c -o builtin.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c character.c -o character.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connections.c -o connections.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cum.c -o cum.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dcf.c -o dcf.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c debug.c -o debug.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c deparse.c -o deparse.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotcode.c -o dotcode.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dounzip.c -o dounzip.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dstruct.c -o dstruct.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c duplicate.c -o duplicate.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c edit.c -o edit.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c engine.c -o engine.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c eval.c -o eval.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c format.c -o format.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gevents.c -o gevents.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gram.c -o gram.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gram-ex.c -o gram-ex.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c grep.c -o grep.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c identical.c -o identical.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inlined.c -o inlined.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inspect.c -o inspect.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c internet.c -o internet.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c iosupport.c -o iosupport.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lapack.c -o lapack.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c list.c -o list.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c localecharset.c -o localecharset.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c logic.c -o logic.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c main.c -o main.o main.c: In function ‘dummy_ii’: main.c:1669:12: warning: function returns address of local variable [-Wreturn-local-addr] return (uintptr_t) ⅈ ^~~~~~~~~~~~~~~ gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mapply.c -o mapply.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match.c -o match.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memory.c -o memory.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c objects.c -o objects.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c options.c -o options.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c paste.c -o paste.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c platform.c -o platform.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plotmath.c -o plotmath.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c print.c -o print.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printarray.c -o printarray.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printvector.c -o printvector.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printutils.c -o printutils.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qsort.c -o qsort.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c radixsort.c -o radixsort.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c raw.c -o raw.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c registration.c -o registration.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c relop.c -o relop.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlocale.c -o rlocale.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c saveload.c -o saveload.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scan.c -o scan.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c seq.c -o seq.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c serialize.c -o serialize.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sort.c -o sort.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c source.c -o source.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sprintf.c -o sprintf.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c startup.c -o startup.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subassign.c -o subassign.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summary.c -o summary.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sysutils.c -o sysutils.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c times.c -o times.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_alab_her.c -o g_alab_her.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_cntrlify.c -o g_cntrlify.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_fontdb.c -o g_fontdb.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_her_glyph.c -o g_her_glyph.o gfortran -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c xxxpr.f -o xxxpr.o gcc -std=gnu99 -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[5]: Entering directory '/<>/src/main' mkdir -p -- /<>/bin/exec mkdir -p -- /<>/lib make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmain.c -o Rmain.o gcc -std=gnu99 -Wl,--export-dynamic -fopenmp -L../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R.bin Rmain.o -lR make[5]: Entering directory '/<>/src/main' make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[5]: Entering directory '/<>/src/modules/internet' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c internet.c -o internet.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c nanoftp.c -o nanoftp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c nanohttp.c -o nanohttp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c sock.c -o sock.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR make[6]: Entering directory '/<>/src/modules/internet' mkdir -p -- /<>/modules make[6]: Leaving directory '/<>/src/modules/internet' make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' making Lapack.d from Lapack.c make[5]: Entering directory '/<>/src/modules/lapack' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Lapack.c -o Lapack.o gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lapack.so Lapack.o -lR -llapack -lblas -lgfortran -lm make[6]: Entering directory '/<>/src/modules/lapack' make[6]: Leaving directory '/<>/src/modules/lapack' make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[5]: Entering directory '/<>/src/modules/X11' gcc -std=gnu99 -I/usr/include/libpng16 -I/usr/include/powerpc64le-linux-gnu -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devX11.c -o devX11.o gcc -std=gnu99 -I/usr/include/libpng16 -I/usr/include/powerpc64le-linux-gnu -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rotated.c -o rotated.o gcc -std=gnu99 -I/usr/include/libpng16 -I/usr/include/powerpc64le-linux-gnu -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbitmap.c -o rbitmap.o gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lR -lm gcc -std=gnu99 -I/usr/include/libpng16 -I/usr/include/powerpc64le-linux-gnu -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dataentry.c -o dataentry.o gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lR -lm make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' mkdir -p -- ../../library make[4]: Entering directory '/<>/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' mkdir -p -- ../../../library/base/demo make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[5]: Entering directory '/<>/src/library/tools' mkdir -p -- ../../../library/tools/R make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmd5.c -o Rmd5.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signals.c -o signals.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c install.c -o install.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getfmts.c -o getfmts.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http.c -o http.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gramLatex.c -o gramLatex.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gramRd.c -o gramRd.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[5]: Entering directory '/<>/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' byte-compiling package 'compiler' make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' byte-compiling package 'base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' byte-compiling package 'tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[5]: Entering directory '/<>/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sock.c -o sock.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' byte-compiling package 'utils' make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[5]: Entering directory '/<>/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c axis_scales.c -o axis_scales.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chull.c -o chull.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devCairo.c -o devCairo.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devPicTeX.c -o devPicTeX.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devPS.c -o devPS.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devQuartz.c -o devQuartz.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../../../src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cairoBM.c -o cairoBM.o gcc -std=gnu99 -shared -L../../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -L../../../../../lib -lR -lm make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' byte-compiling package 'grDevices' make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[5]: Entering directory '/<>/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base.c -o base.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c par.c -o par.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stem.c -o stem.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' byte-compiling package 'graphics' make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[5]: Entering directory '/<>/src/library/stats' mkdir -p -- ../../../library/stats/R make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kmeans.c -o kmeans.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ansari.c -o ansari.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bandwidths.c -o bandwidths.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chisqsim.c -o chisqsim.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c d2x2xk.c -o d2x2xk.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fexact.c -o fexact.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kendall.c -o kendall.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ks.c -o ks.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c line.c -o line.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c smooth.c -o smooth.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prho.c -o prho.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c swilk.c -o swilk.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ksmooth.c -o ksmooth.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loessc.c -o loessc.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c monoSpl.c -o monoSpl.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c isoreg.c -o isoreg.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Srunmed.c -o Srunmed.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dblcen.c -o dblcen.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distance.c -o distance.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hclust-utils.c -o hclust-utils.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nls.c -o nls.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rWishart.c -o rWishart.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c HoltWinters.c -o HoltWinters.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PPsum.c -o PPsum.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arima.c -o arima.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c burg.c -o burg.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filter.c -o filter.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mAR.c -o mAR.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pacf.c -o pacf.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c starma.c -o starma.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c port.c -o port.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c family.c -o family.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sbart.c -o sbart.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c approx.c -o approx.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loglin.c -o loglin.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lowess.c -o lowess.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c massdist.c -o massdist.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lm.c -o lm.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c complete_cases.c -o complete_cases.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cov.c -o cov.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c deriv.c -o deriv.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fft.c -o fft.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fourier.c -o fourier.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c model.c -o model.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optimize.c -o optimize.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distn.c -o distn.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcont.c -o rcont.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c influence.c -o influence.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c bsplvd.f -o bsplvd.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c bvalue.f -o bvalue.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c bvalus.f -o bvalus.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c loessf.f -o loessf.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c ppr.f -o ppr.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c qsbart.f -o qsbart.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c sgram.f -o sgram.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c sinerp.f -o sinerp.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c sslvrg.f -o sslvrg.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c stxwx.f -o stxwx.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c hclust.f -o hclust.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c kmns.f -o kmns.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c eureka.f -o eureka.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c stl.f -o stl.o gfortran -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -ffloat-store -c portsrc.f -o portsrc.o gfortran -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c lminfl.f -o lminfl.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' byte-compiling package 'stats' make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[5]: Entering directory '/<>/src/library/methods' mkdir -p -- ../../../library/methods/R make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c do_substitute_direct.c -o do_substitute_direct.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slot.c -o slot.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c class_support.c -o class_support.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tests.c -o tests.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' byte-compiling 'methods' initializing class and method definitions ... done make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[5]: Entering directory '/<>/src/library/grid' mkdir -p -- ../../../library/grid/R make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making matrix.d from matrix.c making register.d from register.c making state.d from state.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gpar.c -o gpar.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c grid.c -o grid.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c just.c -o just.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c layout.c -o layout.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unit.c -o unit.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c viewport.c -o viewport.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' byte-compiling package 'grid' make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[5]: Entering directory '/<>/src/library/splines' mkdir -p -- ../../../library/splines/R make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' making splines.d from splines.c gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' byte-compiling package 'splines' make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[5]: Entering directory '/<>/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' byte-compiling package 'stats4' make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[5]: Entering directory '/<>/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tcltk.c -o tcltk.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tcltk_unix.c -o tcltk_unix.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/powerpc64le-linux-gnu -ltcl8.6 -L/usr/lib/powerpc64le-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[6]: Entering directory '/<>/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' byte-compiling package 'tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[5]: Entering directory '/<>/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rngstream.c -o rngstream.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fork.c -o fork.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' byte-compiling package 'parallel' make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' you should 'make docs' now ... make[1]: Leaving directory '/<>' (cd src/nmath/standalone; \ /usr/bin/make CFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ CXXFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ FFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -D_REENTRANT" \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ R_GZIPCMD="/bin/gzip -n" \ libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \ shared static ) make[1]: Entering directory '/<>/src/nmath/standalone' (cd ../../include; /usr/bin/make Rmath.h) make[2]: Entering directory '/<>/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/<>/src/include' Copying source files make[2]: Entering directory '/<>/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[2]: Leaving directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/nmath/standalone' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.lo gcc -std=gnu99 -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[2]: Leaving directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/nmath/standalone' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.o ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[2]: Leaving directory '/<>/src/nmath/standalone' make[1]: Leaving directory '/<>/src/nmath/standalone' R_GZIPCMD="/bin/gzip -n" \ /usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example" make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' make[4]: Entering directory '/<>/src/scripts' make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[4]: Entering directory '/<>/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/<>/src/appl' make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[4]: Entering directory '/<>/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/lib/libR.so is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/bin/exec/R is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' make[5]: Entering directory '/<>/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[5]: Entering directory '/<>/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' /<>/modules/R_X11.so is unchanged /<>/modules/R_de.so is unchanged make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' make[4]: Entering directory '/<>/src/library/profile' building system startup profile make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' all.R is unchanged make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' make[5]: Entering directory '/<>/src/library/tools' all.R is unchanged make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' make[7]: Entering directory '/<>/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' make[5]: Entering directory '/<>/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' make[5]: Entering directory '/<>/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' make[7]: Entering directory '/<>/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/<>/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' make[7]: Entering directory '/<>/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' make[5]: Entering directory '/<>/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' make[7]: Entering directory '/<>/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' make[5]: Entering directory '/<>/src/library/stats' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' make[7]: Entering directory '/<>/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' make[5]: Entering directory '/<>/src/library/methods' all.R is unchanged make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' make[7]: Entering directory '/<>/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' make[5]: Entering directory '/<>/src/library/grid' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' make[7]: Entering directory '/<>/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' make[5]: Entering directory '/<>/src/library/splines' all.R is unchanged make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' make[7]: Entering directory '/<>/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' make[5]: Entering directory '/<>/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' make[6]: Entering directory '/<>/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' make[5]: Entering directory '/<>/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' make[7]: Entering directory '/<>/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' you should 'make docs' now ... make[2]: Entering directory '/<>/doc' creating doc/NEWS creating doc/NEWS.pdf make[3]: Entering directory '/<>/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[4]: Entering directory '/<>/doc/html' make[4]: Leaving directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' installing parsed Rd make[4]: Entering directory '/<>/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' building/updating package metadata ... make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' writing package indices make[4]: Entering directory '/<>/src/library' make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src/library' make[1]: Leaving directory '/<>' /usr/bin/make javaconf make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' make[4]: Entering directory '/<>/src/scripts' make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[4]: Entering directory '/<>/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/<>/src/appl' make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[4]: Entering directory '/<>/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/lib/libR.so is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/bin/exec/R is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' make[5]: Entering directory '/<>/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[5]: Entering directory '/<>/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' /<>/modules/R_X11.so is unchanged /<>/modules/R_de.so is unchanged make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' make[4]: Entering directory '/<>/src/library/profile' building system startup profile make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' all.R is unchanged make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' make[5]: Entering directory '/<>/src/library/tools' all.R is unchanged make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' make[7]: Entering directory '/<>/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' make[5]: Entering directory '/<>/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' make[5]: Entering directory '/<>/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' make[7]: Entering directory '/<>/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/<>/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' make[7]: Entering directory '/<>/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' make[5]: Entering directory '/<>/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' make[7]: Entering directory '/<>/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' make[5]: Entering directory '/<>/src/library/stats' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' make[7]: Entering directory '/<>/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' make[5]: Entering directory '/<>/src/library/methods' all.R is unchanged make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' make[7]: Entering directory '/<>/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' make[5]: Entering directory '/<>/src/library/grid' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' make[7]: Entering directory '/<>/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' make[5]: Entering directory '/<>/src/library/splines' all.R is unchanged make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' make[7]: Entering directory '/<>/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' make[5]: Entering directory '/<>/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' make[6]: Entering directory '/<>/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' make[5]: Entering directory '/<>/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' make[7]: Entering directory '/<>/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' configuring Java ... *** JAVA_HOME is not a valid path, ignoring Java interpreter : /usr/bin/java Java version : 9.0.1 Java home path : /usr/lib/jvm/java-9-openjdk-ppc64el Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive tool: /usr/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm make[3]: Entering directory '/tmp/Rjavareconf.soxfxk' gcc -std=gnu99 -I/<>/include -DNDEBUG -I/usr/lib/jvm/java-9-openjdk-ppc64el/include -I/usr/lib/jvm/java-9-openjdk-ppc64el/include/linux -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conftest.c -o conftest.o gcc -std=gnu99 -shared -L/<>/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/java-9-openjdk-ppc64el/lib/server -ljvm -L/<>/lib -lR make[3]: Leaving directory '/tmp/Rjavareconf.soxfxk' JAVA_HOME : /usr/lib/jvm/java-9-openjdk-ppc64el Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /<> Done. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' touch make-arch-stamp *** make-indep *** /usr/bin/make -k docs make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' make[4]: Entering directory '/<>/src/scripts' make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[4]: Entering directory '/<>/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/<>/src/appl' make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[4]: Entering directory '/<>/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/lib/libR.so is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/bin/exec/R is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' make[5]: Entering directory '/<>/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[5]: Entering directory '/<>/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' /<>/modules/R_X11.so is unchanged /<>/modules/R_de.so is unchanged make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' make[4]: Entering directory '/<>/src/library/profile' building system startup profile make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' all.R is unchanged make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' make[5]: Entering directory '/<>/src/library/tools' all.R is unchanged make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' make[7]: Entering directory '/<>/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' make[5]: Entering directory '/<>/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' make[5]: Entering directory '/<>/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' make[7]: Entering directory '/<>/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/<>/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' make[7]: Entering directory '/<>/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' make[5]: Entering directory '/<>/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' make[7]: Entering directory '/<>/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' make[5]: Entering directory '/<>/src/library/stats' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' make[7]: Entering directory '/<>/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' make[5]: Entering directory '/<>/src/library/methods' all.R is unchanged make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' make[7]: Entering directory '/<>/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' make[5]: Entering directory '/<>/src/library/grid' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' make[7]: Entering directory '/<>/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' make[5]: Entering directory '/<>/src/library/splines' all.R is unchanged make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' make[7]: Entering directory '/<>/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' make[5]: Entering directory '/<>/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' make[6]: Entering directory '/<>/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' make[5]: Entering directory '/<>/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' make[7]: Entering directory '/<>/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/manual' make[4]: Entering directory '/<>/doc/html' make[4]: Leaving directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' installing parsed Rd make[4]: Entering directory '/<>/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' building/updating package metadata ... make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' writing package indices make[4]: Entering directory '/<>/src/library' make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src/library' make[1]: Leaving directory '/<>' (cd doc/manual && /usr/bin/make html) make[1]: Entering directory '/<>/doc/manual' make[2]: Entering directory '/<>/doc/html' make[2]: Leaving directory '/<>/doc/html' make[1]: Leaving directory '/<>/doc/manual' /usr/bin/make info make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[1]: Leaving directory '/<>' (cd doc/manual && \ /usr/bin/make refman.pdf R-admin.pdf R-data.pdf R-exts.pdf \ R-FAQ.pdf R-intro.pdf R-ints.pdf R-lang.pdf) make[1]: Entering directory '/<>/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX .......................................... collecting LaTeX docs for package 'tools' ... Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'utils' ... Converting parsed Rd's to LaTeX ............. collecting LaTeX docs for package 'grDevices' ... Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'graphics' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX .............................. collecting LaTeX docs for package 'datasets' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'methods' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'grid' ... Converting parsed Rd's to LaTeX ......... collecting LaTeX docs for package 'splines' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'stats4' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'tcltk' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'compiler' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'parallel' ... Converting parsed Rd's to LaTeX . PDF/LaTeX documentation: reference index ... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2017-04-15> Babel <3.15> and hyphenation patterns for 3 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.112, 2017/01/04 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 366. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 366. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file refman.idx No file refman.aux. (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [1] [2] (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] Underfull \hbox (badness 2547) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 296--300 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] Underfull \hbox (badness 3977) in paragraph at lines 385--388 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [7] [8] Underfull \hbox (badness 2556) in paragraph at lines 533--539 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1144--1147 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1901--1901 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2086--2088 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Underfull \vbox (badness 10000) has occurred while \output is active [50] [51] [52] [53] [54] [55] [56] Underfull \hbox (badness 10000) in paragraph at lines 3607--3609 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [57] [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 3848--3848 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 4823--4825 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Overfull \hbox (5.27168pt too wide) in paragraph at lines 5954--5954 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [94] [95] [96] Underfull \hbox (badness 2096) in paragraph at lines 6137--6150 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [97] [98] [99] Overfull \hbox (56.34871pt too wide) in paragraph at lines 6341--6343 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 6483--6486 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [102] [103] Underfull \hbox (badness 1442) in paragraph at lines 6646--6652 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [104] Underfull \hbox (badness 3568) in paragraph at lines 6708--6715 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] [109] Underfull \hbox (badness 1077) in paragraph at lines 7019--7025 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7019--7025 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [110] [111] [112] [113] [114] Underfull \hbox (badness 2096) in paragraph at lines 7360--7364 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [115] [116] Underfull \hbox (badness 3000) in paragraph at lines 7453--7455 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7478--7481 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [117] [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 7733--7743 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [121] [122] Underfull \hbox (badness 4479) in paragraph at lines 7804--7814 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1394) in paragraph at lines 9477--9482 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [148] [149] [150] [151] [152] Underfull \hbox (badness 1194) in paragraph at lines 9822--9827 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9822--9827 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [153] [154] Underfull \hbox (badness 1735) in paragraph at lines 9960--9964 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [155] [156] [157] [158] [159] [160] [161] Underfull \hbox (badness 2150) in paragraph at lines 10375--10378 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 10389--10397 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2735) in paragraph at lines 10429--10436 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] Underfull \hbox (badness 4569) in paragraph at lines 11493--11497 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11493--11497 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [178] [179] [180] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 2698) in paragraph at lines 12070--12079 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 12070--12079 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [187] [188] [189] [190] [191] Underfull \vbox (badness 3803) has occurred while \output is active [192] [193] [194] [195] [196] Underfull \hbox (badness 6236) in paragraph at lines 12729--12732 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [197] [198] [199] [200] [201] [202] Underfull \hbox (badness 2253) in paragraph at lines 13141--13143 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [203] Underfull \hbox (badness 1565) in paragraph at lines 13212--13216 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [204] Underfull \hbox (badness 10000) in paragraph at lines 13256--13258 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [205] [206] Underfull \hbox (badness 1466) in paragraph at lines 13396--13399 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [207] [208] Underfull \hbox (badness 10000) in paragraph at lines 13514--13518 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13525--13528 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [209] [210] [211] [212] Underfull \hbox (badness 3965) in paragraph at lines 13788--13792 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] Underfull \hbox (badness 4429) in paragraph at lines 14550--14553 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [225] [226] Underfull \hbox (badness 10000) in paragraph at lines 14650--14652 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14656--14660 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 10000) in paragraph at lines 14695--14699 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14695--14699 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] Underfull \hbox (badness 2452) in paragraph at lines 15284--15288 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15284--15288 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [237] [238] [239] Underfull \hbox (badness 1092) in paragraph at lines 15457--15462 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [240] [241] [242] Underfull \hbox (badness 6741) in paragraph at lines 15705--15709 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [243] [244] [245] [246] [247] Underfull \hbox (badness 1867) in paragraph at lines 16011--16018 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [248] [249] [250] [251] Underfull \vbox (badness 10000) has occurred while \output is active [252] [253] [254] Underfull \hbox (badness 3679) in paragraph at lines 16421--16423 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 1478) in paragraph at lines 16976--16979 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [263] [264] [265] Underfull \hbox (badness 10000) in paragraph at lines 17229--17231 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [266] [267] [268] [269] [270] [271] [272] [273] [274] [275] Underfull \hbox (badness 1442) in paragraph at lines 17819--17821 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [276] Underfull \hbox (badness 2452) in paragraph at lines 17911--17927 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [277] [278] [279] [280] [281] [282] [283] Underfull \hbox (badness 1248) in paragraph at lines 18325--18328 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [284] [285] [286] [287] Underfull \hbox (badness 4739) in paragraph at lines 18583--18585 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 2469) in paragraph at lines 19600--19605 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and Underfull \hbox (badness 10000) in paragraph at lines 19614--19621 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / [305] Underfull \hbox (badness 10000) in paragraph at lines 19688--19692 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 19688--19692 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [306] [307] Underfull \hbox (badness 1509) in paragraph at lines 19823--19830 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1552) in paragraph at lines 19823--19830 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 19839--19844 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] [318] Underfull \hbox (badness 1264) in paragraph at lines 20572--20577 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [319] Underfull \hbox (badness 4441) in paragraph at lines 20601--20604 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] Underfull \hbox (badness 10000) in paragraph at lines 21327--21329 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] [346] Underfull \hbox (badness 1077) in paragraph at lines 22362--22368 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [347] [348] [349] Underfull \hbox (badness 1484) in paragraph at lines 22523--22531 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [350] [351] [352] [353] Underfull \hbox (badness 2790) in paragraph at lines 22794--22797 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 22794--22797 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [354] [355] [356] [357] Underfull \hbox (badness 1194) in paragraph at lines 23076--23079 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [358] [359] [360] [361] Underfull \hbox (badness 10000) in paragraph at lines 23282--23288 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 7379) in paragraph at lines 23282--23288 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] Underfull \hbox (badness 10000) in paragraph at lines 24242--24244 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [376] [377] [378] [379] Underfull \hbox (badness 1199) in paragraph at lines 24486--24492 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 24486--24492 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [380] [381] [382] [383] [384] [385] [386] [387] [388] Underfull \hbox (badness 1038) in paragraph at lines 25065--25073 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 25074--25077 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25093--25095 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [389] Underfull \hbox (badness 10000) in paragraph at lines 25202--25212 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 25213--25219 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [390] Underfull \hbox (badness 1968) in paragraph at lines 25249--25254 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 25259--25261 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [391] [392] [393] Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 25531--25534 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 25555--25557 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [394] Underfull \hbox (badness 10000) in paragraph at lines 25587--25592 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 25593--25604 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 25605--25608 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3713) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN ma-cOS build), Underfull \hbox (badness 7944) in paragraph at lines 25615--25627 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). Underfull \hbox (badness 2351) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/z i4/m/n/10 "mac.binary.mavericks"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.leo pard"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 25629--25636 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1874) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [395] [396] [397] [398] [399] Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [400] [401] [402] [403] [404] Underfull \hbox (badness 1735) in paragraph at lines 26294--26298 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] Underfull \hbox (badness 2726) in paragraph at lines 26865--26868 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] Underfull \hbox (badness 1052) in paragraph at lines 27692--27697 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [428] [429] [430] [431] [432] Underfull \vbox (badness 10000) has occurred while \output is active [433] [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 1533) in paragraph at lines 28501--28504 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [440] [441] [442] Underfull \hbox (badness 1163) in paragraph at lines 28663--28674 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] Underfull \hbox (badness 10000) in paragraph at lines 30186--30190 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 30186--30190 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 30208--30210 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [467] [468] [469] [470] [471] [472] [473] [474] [475] Underfull \hbox (badness 1655) in paragraph at lines 30756--30758 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] Underfull \hbox (badness 10000) in paragraph at lines 31431--31435 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [487] [488] [489] [490] Underfull \hbox (badness 2302) in paragraph at lines 31671--31678 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 3333) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [491] [492] Underfull \hbox (badness 2261) in paragraph at lines 31827--31832 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 31854--31860 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [493] Underfull \hbox (badness 10000) in paragraph at lines 31930--31935 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] Underfull \vbox (badness 3803) has occurred while \output is active [533] [534] [535] [536] [537] [538] [539] [540] Underfull \hbox (badness 1072) in paragraph at lines 34968--34972 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 34973--34977 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [541] Underfull \hbox (badness 3343) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [542] [543] [544] [545] Underfull \hbox (badness 10000) in paragraph at lines 35311--35317 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1264) in paragraph at lines 35311--35317 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] Underfull \hbox (badness 3333) in paragraph at lines 37155--37160 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [576] [577] [578] [579] [580] [581] Underfull \vbox (badness 10000) has occurred while \output is active [582] [583] [584] [585] Underfull \hbox (badness 1472) in paragraph at lines 37778--37781 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] Underfull \vbox (badness 3803) has occurred while \output is active [599] Underfull \hbox (badness 10000) in paragraph at lines 38643--38647 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., [600] [601] [602] [603] Underfull \hbox (badness 10000) in paragraph at lines 38891--38894 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [604] [605] Underfull \hbox (badness 10000) in paragraph at lines 39009--39013 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [606] Underfull \hbox (badness 10000) in paragraph at lines 39071--39075 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [607] [608] [609] [610] [611] [612] [613] [614] Underfull \hbox (badness 4013) in paragraph at lines 39584--39586 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / www . twinsun . com / tz / tz-[]link . [615] [616] [617] [618] [619] Underfull \vbox (badness 3803) has occurred while \output is active [620] [621] [622] [623] [624] [625] [626] [627] Underfull \hbox (badness 3460) in paragraph at lines 40424--40427 []\T1/ptm/m/n/10 a [][]con-nec-tion[][][], or a char-ac-ter string nam-ing the file to print to (via Underfull \hbox (badness 1990) in paragraph at lines 40431--40439 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 40431--40439 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [628] [629] [630] [631] Underfull \hbox (badness 10000) in paragraph at lines 40708--40711 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. [632] [633] [634] [635] Underfull \hbox (badness 1917) in paragraph at lines 40936--40943 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] Underfull \hbox (badness 3668) in paragraph at lines 41615--41617 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [647] Underfull \hbox (badness 2401) in paragraph at lines 41721--41725 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [648] [649] [650] Underfull \hbox (badness 2111) in paragraph at lines 41897--41902 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 7362) in paragraph at lines 41913--41918 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [651] [652] [653] [654] [655] [656] [657] [658] [659] Underfull \hbox (badness 5417) in paragraph at lines 42470--42474 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [660] Underfull \hbox (badness 10000) in paragraph at lines 42531--42535 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [661]) (./compiler-pkg.tex [662] Chapter 2. [663] [664] [665] [666]) (./datasets-pkg.tex Chapter 3. [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] Underfull \vbox (badness 1515) has occurred while \output is active [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] Underfull \hbox (badness 6658) in paragraph at lines 3954--3956 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h ttp : / / www . ltrr . arizona . edu / ~hallman / [734] Underfull \vbox (badness 10000) has occurred while \output is active [735] [736] [737] [738] Underfull \vbox (badness 10000) has occurred while \output is active [739] [740] [741] [742] [743] [744] Overfull \vbox (18.9959pt too high) has occurred while \output is active [745] [746] [747]) (./grDevices-pkg.tex [748] Chapter 4. [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] Underfull \hbox (badness 5175) in paragraph at lines 1069--1071 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [766] [767] [768] [769] Underfull \hbox (badness 1852) in paragraph at lines 1266--1269 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [770] [771] [772] Underfull \hbox (badness 1490) in paragraph at lines 1472--1477 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [773] [774] Underfull \hbox (badness 10000) in paragraph at lines 1595--1599 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [775] [776] [777] [778] Underfull \hbox (badness 1325) in paragraph at lines 1878--1888 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [779] [780] Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [781] [782] [783] Underfull \hbox (badness 6758) in paragraph at lines 2144--2147 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [784] [785] [786] [787] [788] [789] [790] [791] [792] Underfull \hbox (badness 10000) in paragraph at lines 2732--2733 [793] [794] [795] [796] [797] [798] [799] [800] Underfull \hbox (badness 10000) in paragraph at lines 3230--3235 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [801] [802] [803] [804] Underfull \hbox (badness 3302) in paragraph at lines 3489--3492 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3503--3505 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1067) in paragraph at lines 4326--4333 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [818] [819] Underfull \hbox (badness 3364) in paragraph at lines 4486--4488 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 https : / / partners . adobe . com / public / [820] Underfull \hbox (badness 1789) in paragraph at lines 4563--4565 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [821] Underfull \hbox (badness 1377) in paragraph at lines 4613--4618 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [822] Underfull \hbox (badness 2671) in paragraph at lines 4640--4648 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4689--4696 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4707--4709 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [823] [824] Underfull \hbox (badness 1057) in paragraph at lines 4818--4823 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and [825] Underfull \hbox (badness 7344) in paragraph at lines 4878--4880 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [826] [827] Underfull \hbox (badness 2035) in paragraph at lines 5002--5011 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [828] Underfull \hbox (badness 10000) in paragraph at lines 5070--5077 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5070--5077 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [829] [830] [831] Underfull \hbox (badness 1546) in paragraph at lines 5212--5220 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [832] Underfull \hbox (badness 1648) in paragraph at lines 5289--5293 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [833] [834] [835] [836] [837] [838] [839] Underfull \hbox (badness 10000) in paragraph at lines 5741--5744 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [840] [841] [842] [843] [844] [845] Underfull \hbox (badness 1189) in paragraph at lines 6138--6140 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [846] [847] Underfull \hbox (badness 10000) in paragraph at lines 6236--6238 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [848] [849] [850] [851] Underfull \hbox (badness 3780) in paragraph at lines 6527--6533 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [852] [853] [854] Underfull \hbox (badness 2680) in paragraph at lines 6728--6730 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [855] [856] [857]) (./graphics-pkg.tex [858] Chapter 5. [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [870] [871] [872] [873] Underfull \vbox (badness 3803) has occurred while \output is active [874] [875] [876] [877] [878] [879] Underfull \hbox (badness 4634) in paragraph at lines 1255--1258 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 1009) in paragraph at lines 2289--2296 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] Underfull \vbox (badness 10000) has occurred while \output is active [919] [920] [921] [922] Underfull \hbox (badness 1867) in paragraph at lines 3931--3935 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [923] [924] [925] [926] [927] [928] [929] [930] Underfull \hbox (badness 1924) in paragraph at lines 4378--4383 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain Underfull \hbox (badness 2529) in paragraph at lines 4409--4412 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [931] [932] [933] [934] [935] Underfull \hbox (badness 10000) in paragraph at lines 4759--4765 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4759--4765 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [936] [937] Underfull \hbox (badness 10000) in paragraph at lines 4890--4893 [938 >/library/graphics/help/figures/mai.pdf>] Underfull \hbox (badness 10000) in paragraph at lines 4951--4953 Underfull \vbox (badness 10000) has occurred while \output is active [939] [940 >/library/graphics/help/figures/oma.pdf>] [941] Underfull \hbox (badness 10000) in paragraph at lines 5141--5143 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [942] Underfull \vbox (badness 3803) has occurred while \output is active [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6612--6613 [][] [965] [966 >/library/graphics/help/figures/pch .pdf>] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] Underfull \hbox (badness 1048) in paragraph at lines 7321--7326 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [977] [978] Underfull \hbox (badness 1102) in paragraph at lines 7437--7440 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] Underfull \hbox (badness 1043) in paragraph at lines 8272--8276 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly en-larged) usual plot-ting sym-bol (\T1/zi4/m/n/10 pch\T1/ptm/m/n/10 ) is drawn . For [993] [994] [995] [996] [997] [998] [999] Underfull \hbox (badness 10000) in paragraph at lines 8675--8677 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8677--8679 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [1000]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.8757 \HeaderA{units}{Graphical Units}{units} [1001] [1002] [1003] [1004]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [1005] [1006] [1007] [1008] [1009] [1010] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 4279) in paragraph at lines 970--979 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] Underfull \vbox (badness 3803) has occurred while \output is active [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] Underfull \hbox (badness 1067) in paragraph at lines 4340--4343 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1078] [1079] [1080] [1081] Underfull \hbox (badness 7256) in paragraph at lines 4585--4587 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] Underfull \hbox (badness 10000) in paragraph at lines 5862--5868 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] Underfull \hbox (badness 7649) in paragraph at lines 6341--6344 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1112] [1113] [1114] [1115]) (./methods-pkg.tex [1116] Chapter 7. [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \vbox (badness 3803) has occurred while \output is active [1125] Underfull \vbox (badness 10000) has occurred while \output is active [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] Underfull \hbox (badness 2237) in paragraph at lines 1386--1388 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] Underfull \hbox (badness 1077) in paragraph at lines 1933--1940 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests [1144] Underfull \hbox (badness 10000) in paragraph at lines 1982--1987 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1982--1987 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1145] [1146] [1147] Underfull \hbox (badness 1242) in paragraph at lines 2215--2220 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1148] [1149] [1150] [1151] [1152] Underfull \hbox (badness 10000) in paragraph at lines 2575--2578 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1153] [1154] Underfull \hbox (badness 1132) in paragraph at lines 2715--2719 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1155] Underfull \hbox (badness 1033) in paragraph at lines 2747--2752 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 1102) in paragraph at lines 3304--3306 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1163] [1164] [1165] [1166] [1167] [1168] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1169] Overfull \hbox (123.02902pt too wide) in paragraph at lines 3765--3766 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longitude = "numeric", altitude = "numeric")) Underfull \hbox (badness 10000) in paragraph at lines 3765--3766 [1170] Overfull \hbox (16.41006pt too wide) in paragraph at lines 3849--3850 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = "numeric") [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 1436) in paragraph at lines 4446--4449 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4475--4481 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4475--4481 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1181] Underfull \hbox (badness 1092) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] Underfull \vbox (badness 10000) has occurred while \output is active [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 5358--5359 []\T1/zi4/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1193] Underfull \hbox (badness 4036) in paragraph at lines 5440--5443 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1194] Underfull \hbox (badness 3803) in paragraph at lines 5515--5517 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1195] [1196] [1197] [1198] Underfull \hbox (badness 1087) in paragraph at lines 5747--5752 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] Underfull \hbox (badness 1675) in paragraph at lines 6454--6460 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1207] [1208] [1209] [1210] Underfull \vbox (badness 10000) has occurred while \output is active [1211] [1212] [1213] [1214]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6976 \aliasA{S4}{S3Part}{S4} [1215] [1216] [1217]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7232 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7234 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7235 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7237 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7238 \aliasA{Summary}{S4groupGeneric}{Summary} [1218] Underfull \hbox (badness 2050) in paragraph at lines 7299--7303 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1219] [1220] [1221] Underfull \hbox (badness 1286) in paragraph at lines 7487--7489 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] Underfull \vbox (badness 10000) has occurred while \output is active [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] Underfull \hbox (badness 1852) in paragraph at lines 10567--10571 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1264] [1265] [1266] [1267]) (./parallel-pkg.tex [1268] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 3386) in paragraph at lines 1268--1271 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1289] [1290] [1291]) (./splines-pkg.tex [1292] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307]) (./stats-pkg.tex [1308] Chapter 10. [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1412) in paragraph at lines 848--850 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] Underfull \hbox (badness 2503) in paragraph at lines 1329--1332 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1330] [1331] [1332] Underfull \hbox (badness 10000) in paragraph at lines 1508--1512 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] Underfull \hbox (badness 3965) in paragraph at lines 2168--2170 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1344] [1345] [1346] [1347] [1348] Underfull \hbox (badness 3965) in paragraph at lines 2510--2512 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] Underfull \hbox (badness 2726) in paragraph at lines 3224--3240 \T1/ptm/m/n/10 We have slightly tweaked the orig-i-nal ``TOMS 708'' al-go-rithm , and en-hanced for [1360] [1361] Underfull \hbox (badness 2503) in paragraph at lines 3354--3357 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] Underfull \hbox (badness 3989) in paragraph at lines 4582--4589 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] Underfull \hbox (badness 2556) in paragraph at lines 5193--5196 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5210--5212 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1392] [1393] [1394] [1395] Underfull \hbox (badness 1142) in paragraph at lines 5451--5463 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1396] [1397] [1398] Underfull \hbox (badness 2503) in paragraph at lines 5599--5603 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] Underfull \hbox (badness 8132) in paragraph at lines 6102--6107 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1407] [1408] [1409] [1410] [1411] Underfull \hbox (badness 7081) in paragraph at lines 6380--6383 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6384--6386 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1412] [1413] [1414] [1415] [1416] Underfull \vbox (badness 3803) has occurred while \output is active [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] Underfull \hbox (badness 10000) in paragraph at lines 7225--7228 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] Underfull \hbox (badness 2626) in paragraph at lines 8860--8863 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1452] Underfull \hbox (badness 2503) in paragraph at lines 8960--8964 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1453] [1454] [1455] [1456] [1457] [1458] Overfull \hbox (3.53955pt too wide) in paragraph at lines 9309--9311 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 4518) in paragraph at lines 10235--10240 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1473] [1474] [1475] [1476] [1477] Underfull \hbox (badness 2142) in paragraph at lines 10577--10580 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10596--10599 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1478] Underfull \hbox (badness 1708) in paragraph at lines 10658--10662 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 1694) in paragraph at lines 11054--11057 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1485] Underfull \hbox (badness 1867) in paragraph at lines 11073--11082 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1486] [1487] [1488] [1489] [1490] Underfull \hbox (badness 10000) in paragraph at lines 11380--11383 []\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds [][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq uiv-a-lent of [1491] [1492]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.hat}) has been already used, duplicate ignored \relax l.11534 \aliasA{hat}{influence.measures}{hat} [1493] [1494] Underfull \hbox (badness 1484) in paragraph at lines 11665--11667 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 4441) in paragraph at lines 12248--12250 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12255--12257 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1505] [1506] [1507] [1508] [1509] [1510] Underfull \hbox (badness 2894) in paragraph at lines 12589--12593 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] Underfull \hbox (badness 4518) in paragraph at lines 13284--13289 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] Underfull \hbox (badness 4518) in paragraph at lines 13931--13936 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1532] [1533] [1534] Underfull \hbox (badness 10000) in paragraph at lines 14069--14073 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 14076--14078 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] Underfull \hbox (badness 2503) in paragraph at lines 15138--15142 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] Underfull \hbox (badness 1584) in paragraph at lines 15650--15656 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] Underfull \hbox (badness 2359) in paragraph at lines 17287--17289 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1587] Underfull \vbox (badness 3803) has occurred while \output is active [1588] Underfull \vbox (badness 10000) has occurred while \output is active [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 1377) in paragraph at lines 18198--18203 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18203--18206 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on [1602] Underfull \hbox (badness 1454) in paragraph at lines 18216--18220 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18224--18228 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] Underfull \hbox (badness 1337) in paragraph at lines 18840--18843 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 3049) in paragraph at lines 19326--19330 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1622] [1623] [1624] [1625] Underfull \hbox (badness 5563) in paragraph at lines 19576--19578 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19579--19582 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 2503) in paragraph at lines 19954--19957 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1632] Underfull \hbox (badness 10000) in paragraph at lines 19981--19983 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 10000) in paragraph at lines 21029--21035 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] Underfull \hbox (badness 1337) in paragraph at lines 22367--22373 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Overfull \hbox (27.74408pt too wide) in paragraph at lines 22912--22912 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1681] [1682] [1683] [1684] [1685] Underfull \hbox (badness 10000) in paragraph at lines 23162--23165 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Underfull \hbox (badness 10000) in paragraph at lines 23747--23750 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1695] Underfull \hbox (badness 3690) in paragraph at lines 23798--23802 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] Underfull \hbox (badness 3439) in paragraph at lines 24268--24274 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1705] [1706] [1707] Underfull \hbox (badness 1867) in paragraph at lines 24465--24467 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallback = use.fallback) \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 PP <- sum(!is.na([][]coef[][][](object))) \T1/ptm/m/n/10 -- wher e in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was Underfull \hbox (badness 1132) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 length(coef(object)) \T1/ptm/m/n/10 which is too large in case o f un-de-ter-mined co-ef-fi-cients, e.g., for [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 10000) in paragraph at lines 24950--24955 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 3514) in paragraph at lines 25992--25997 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1733] Underfull \hbox (badness 3514) in paragraph at lines 26054--26059 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1734] Underfull \hbox (badness 3514) in paragraph at lines 26111--26116 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1735] Underfull \hbox (badness 3514) in paragraph at lines 26172--26178 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1736] [1737] [1738] [1739] Underfull \hbox (badness 3514) in paragraph at lines 26385--26390 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1740] Underfull \hbox (badness 3514) in paragraph at lines 26441--26446 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1741] Underfull \hbox (badness 3514) in paragraph at lines 26499--26504 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1742] Underfull \hbox (badness 3514) in paragraph at lines 26554--26559 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Underfull \hbox (badness 6691) in paragraph at lines 26623--26628 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 5431) in paragraph at lines 27753--27755 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1763] [1764] [1765] Underfull \hbox (badness 5431) in paragraph at lines 27963--27966 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1766] [1767] [1768] [1769] [1770] [1771] Underfull \hbox (badness 1337) in paragraph at lines 28277--28281 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1772] [1773] Underfull \hbox (badness 10000) in paragraph at lines 28394--28397 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1774] [1775] Underfull \hbox (badness 1616) in paragraph at lines 28577--28580 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] Underfull \hbox (badness 10000) in paragraph at lines 29703--29707 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1795] [1796] [1797] Underfull \vbox (badness 10000) has occurred while \output is active [1798] [1799] [1800] Underfull \hbox (badness 1337) in paragraph at lines 30067--30071 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 30551--30555 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] Underfull \hbox (badness 2142) in paragraph at lines 30628--30633 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 x \T1/ptm/m/n/10 (and \T1/zi4/m/n/10 y \T1 /ptm/m/n/10 if ap-pli-ca-ble) are valid, the func-tion now al-ways re-turns, al so in the [1810] Underfull \hbox (badness 5161) in paragraph at lines 30650--30652 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 10000) in paragraph at lines 31032--31037 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1817] [1818]) (./stats4-pkg.tex Chapter 11. [1819] [1820] [1821] [1822] [1823] [1824]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1825] [1826] [1827] [1828]) (./tcltk-pkg.tex Chapter 12. [1829] [1830] [1831] [1832] [1833] [1834] [1835] Underfull \vbox (badness 10000) has occurred while \output is active [1836] Underfull \vbox (badness 10000) has occurred while \output is active [1837] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] [1848] Underfull \hbox (badness 3019) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the ma-cOS GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 ( whose [1849]) (./tools-pkg.tex [1850] Chapter 13. [1851] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1852] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1853] [1854] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1855] [1856] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 1635) in paragraph at lines 1053--1055 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1868] Underfull \hbox (badness 4441) in paragraph at lines 1131--1141 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1869] Underfull \hbox (badness 1014) in paragraph at lines 1153--1155 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1159--1161 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1196--1199 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1196--1199 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1870] [1871] [1872] Underfull \hbox (badness 10000) in paragraph at lines 1365--1367 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1873] [1874] [1875] Underfull \hbox (badness 2293) in paragraph at lines 1539--1541 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1876] [1877] Underfull \hbox (badness 7981) in paragraph at lines 1677--1682 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1684--1686 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1878] [1879] [1880] [1881]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1881 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1882] [1883] [1884] [1885] [1886] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2183--2183 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1887] [1888] [1889] Underfull \hbox (badness 7981) in paragraph at lines 2352--2358 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1890] [1891] [1892] [1893] [1894] [1895] [1896] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2817. [1897] [1898] [1899] [1900] Underfull \hbox (badness 1424) in paragraph at lines 3099--3101 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] Underfull \hbox (badness 10000) in paragraph at lines 3799--3801 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1913] [1914] Underfull \hbox (badness 10000) in paragraph at lines 3938--3941 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1915] [1916] Underfull \hbox (badness 1137) in paragraph at lines 4036--4038 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1917] [1918] [1919] Underfull \hbox (badness 1838) in paragraph at lines 4245--4251 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4245--4251 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1920] Underfull \hbox (badness 5726) in paragraph at lines 4325--4330 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 4325--4330 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1921] [1922] [1923] Underfull \hbox (badness 2197) in paragraph at lines 4474--4484 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 2229) in paragraph at lines 4474--4484 \T1/ptm/m/n/10 fields will al-ways be in-cluded, plus the file name in field \T 1/zi4/m/sl/10 "File" \T1/ptm/m/n/10 if [1924] Underfull \hbox (badness 1571) in paragraph at lines 4537--4541 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1925] [1926] [1927]) (./utils-pkg.tex [1928] Chapter 14. [1929] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1930] [1931] [1932] [1933] [1934] [1935] [1936] Underfull \hbox (badness 10000) in paragraph at lines 546--552 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 546--552 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1937] [1938] Underfull \hbox (badness 5847) in paragraph at lines 660--666 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 660--666 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1939] Underfull \hbox (badness 3861) in paragraph at lines 728--733 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1940] [1941] [1942] Underfull \hbox (badness 1430) in paragraph at lines 893--900 \T1/ptm/m/n/10 in-di-cat-ing that the bib-tex code should be given in ad-di-tio n to the for- Underfull \hbox (badness 1931) in paragraph at lines 893--900 \T1/ptm/m/n/10 mat-ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not mo re than $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 1038) in paragraph at lines 893--900 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x", 1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 893--900 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1943] [1944] [1945] [1946] [1947] [1948] [1949] Underfull \hbox (badness 1371) in paragraph at lines 1375--1377 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 2057) in paragraph at lines 1863--1865 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1958] Underfull \hbox (badness 10000) in paragraph at lines 1958--1960 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1959] [1960] Underfull \hbox (badness 5189) in paragraph at lines 2060--2062 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1961] Underfull \vbox (badness 3803) has occurred while \output is active [1962] [1963] [1964] Underfull \hbox (badness 1661) in paragraph at lines 2278--2285 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1748) in paragraph at lines 2294--2297 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 10000) in paragraph at lines 2703--2707 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing Overfull \hbox (59.4187pt too wide) in paragraph at lines 2708--2711 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](..., header = TRUE, sep = ";", as.is=FALSE)\T1/ptm/m/n/10 , [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] Underfull \hbox (badness 1430) in paragraph at lines 3385--3393 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3434--3440 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] [2011] Underfull \hbox (badness 1371) in paragraph at lines 5271--5273 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [2012] Underfull \hbox (badness 1502) in paragraph at lines 5360--5365 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5360--5365 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2013] [2014] [2015] Underfull \hbox (badness 10000) in paragraph at lines 5533--5542 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2016] Underfull \hbox (badness 2150) in paragraph at lines 5596--5599 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2017] [2018] Underfull \hbox (badness 3118) in paragraph at lines 5733--5735 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5766--5770 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [2019] [2020] Underfull \hbox (badness 1325) in paragraph at lines 5874--5878 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [2021] Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [2022] Underfull \hbox (badness 3219) in paragraph at lines 6030--6037 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [2023] Underfull \hbox (badness 10000) in paragraph at lines 6110--6115 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] [2045] [2046] [2047] Underfull \hbox (badness 10000) in paragraph at lines 7527--7529 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7532--7537 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 1789) in paragraph at lines 8087--8089 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] Underfull \hbox (badness 1097) in paragraph at lines 8916--8919 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2069] Underfull \hbox (badness 3000) in paragraph at lines 9052--9057 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 2134) in paragraph at lines 9635--9640 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [2079] [2080] [2081] [2082] [2083] [2084] [2085] Underfull \hbox (badness 5077) in paragraph at lines 10060--10064 []\T1/zi4/m/sl/10 as.roman \T1/ptm/m/n/10 cre-ates ob-jects of class \T1/zi4/m/ sl/10 "roman" \T1/ptm/m/n/10 which are in-ter-nally rep-re-sented as in-te- Underfull \hbox (badness 2269) in paragraph at lines 10060--10064 \T1/ptm/m/n/10 gers, and have suit-able meth-ods for print-ing, for-mat-ting, s ub-set-ting, co-er-cion, etc, see Underfull \hbox (badness 2469) in paragraph at lines 10072--10076 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 10072--10076 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2086] [2087] [2088] [2089] [2090] Overfull \hbox (18.77168pt too wide) in paragraph at lines 10366--10366 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2091] Underfull \hbox (badness 10000) in paragraph at lines 10429--10431 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [2092] [2093] [2094] Underfull \hbox (badness 2150) in paragraph at lines 10605--10607 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2095] [2096] [2097] [2098] Underfull \hbox (badness 10000) in paragraph at lines 10824--10828 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 10855--10861 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2099] [2100] Underfull \hbox (badness 2096) in paragraph at lines 10973--10976 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10977--10980 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [2101] Underfull \hbox (badness 1009) in paragraph at lines 11049--11060 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2102] [2103] [2104] [2105] [2106] Underfull \hbox (badness 3780) in paragraph at lines 11355--11359 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 11374--11377 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 2818) in paragraph at lines 11746--11751 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 11755--11758 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2113] [2114] [2115] [2116] [2117] Underfull \hbox (badness 10000) in paragraph at lines 12018--12020 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2118] [2119] Underfull \hbox (badness 1057) in paragraph at lines 12175--12182 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, [2120] [2121] [2122] [2123] Underfull \hbox (badness 6510) in paragraph at lines 12434--12438 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 12441--12444 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 12441--12444 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Underfull \hbox (badness 10000) in paragraph at lines 12983--12985 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 12986--12988 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2132] Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 1297) in paragraph at lines 13016--13021 \T1/zi4/m/sl/10 available.packages(contriburl = contriburl, method = method) \T 1/ptm/m/n/10 and hence by Underfull \hbox (badness 10000) in paragraph at lines 13045--13048 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2133] [2134] [2135] [2136] Overfull \hbox (23.85939pt too wide) in paragraph at lines 13287--13290 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2137] [2138] Underfull \hbox (badness 1454) in paragraph at lines 13364--13368 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2139] Underfull \hbox (badness 10000) in paragraph at lines 13434--13436 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2140] [2141] [2142]) No file refman.ind. (./refman.aux) Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do es not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/ texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb> Output written on refman.pdf (2145 pages, 5324307 bytes). Transcript written on refman.log. This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning input file refman.idx.................done (13381 entries accepted, 34 rejected). Sorting entries..............................................................................................................................................done (207681 comparisons). Generating output file refman.ind................done (13222 lines written, 49 warnings). Output written in refman.ind. Transcript written in refman.ilg. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2017-04-15> Babel <3.15> and hyphenation patterns for 3 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.112, 2017/01/04 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 366. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 366. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file refman.idx (./refman.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./refman.out) (./refman.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] (./refman.toc (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28]) [29] [30] (./base-pkg.tex Chapter 1. [1] [2] Underfull \hbox (badness 2547) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 296--300 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] Underfull \hbox (badness 3977) in paragraph at lines 385--388 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [7] [8] Underfull \hbox (badness 2556) in paragraph at lines 533--539 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1144--1147 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1901--1901 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2086--2088 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Underfull \vbox (badness 10000) has occurred while \output is active [50] [51] [52] [53] [54] [55] [56] Underfull \hbox (badness 10000) in paragraph at lines 3607--3609 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [57] [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 3848--3848 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 4823--4825 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Overfull \hbox (5.27168pt too wide) in paragraph at lines 5954--5954 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [94] [95] [96] Underfull \hbox (badness 2096) in paragraph at lines 6137--6150 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [97] [98] [99] Overfull \hbox (56.34871pt too wide) in paragraph at lines 6341--6343 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 6483--6486 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [102] [103] Underfull \hbox (badness 1442) in paragraph at lines 6646--6652 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [104] Underfull \hbox (badness 3568) in paragraph at lines 6708--6715 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] [109] Underfull \hbox (badness 1077) in paragraph at lines 7019--7025 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7019--7025 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [110] [111] [112] [113] [114] Underfull \hbox (badness 2096) in paragraph at lines 7360--7364 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [115] [116] Underfull \hbox (badness 3000) in paragraph at lines 7453--7455 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7478--7481 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [117] [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 7733--7743 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [121] [122] Underfull \hbox (badness 4479) in paragraph at lines 7804--7814 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1394) in paragraph at lines 9477--9482 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [148] [149] [150] [151] [152] Underfull \hbox (badness 1194) in paragraph at lines 9822--9827 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9822--9827 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [153] [154] Underfull \hbox (badness 1735) in paragraph at lines 9960--9964 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [155] [156] [157] [158] [159] [160] [161] Underfull \hbox (badness 2150) in paragraph at lines 10375--10378 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 10389--10397 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2735) in paragraph at lines 10429--10436 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] Underfull \hbox (badness 4569) in paragraph at lines 11493--11497 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11493--11497 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [178] [179] [180] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 2698) in paragraph at lines 12070--12079 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 12070--12079 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [187] [188] [189] [190] [191] Underfull \vbox (badness 3803) has occurred while \output is active [192] [193] [194] [195] [196] Underfull \hbox (badness 6236) in paragraph at lines 12729--12732 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [197] [198] [199] [200] [201] [202] Underfull \hbox (badness 2253) in paragraph at lines 13141--13143 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [203] Underfull \hbox (badness 1565) in paragraph at lines 13212--13216 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [204] Underfull \hbox (badness 10000) in paragraph at lines 13256--13258 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [205] [206] Underfull \hbox (badness 1466) in paragraph at lines 13396--13399 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [207] [208] Underfull \hbox (badness 10000) in paragraph at lines 13514--13518 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13525--13528 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [209] [210] [211] [212] Underfull \hbox (badness 3965) in paragraph at lines 13788--13792 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] Underfull \hbox (badness 4429) in paragraph at lines 14550--14553 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [225] [226] Underfull \hbox (badness 10000) in paragraph at lines 14650--14652 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14656--14660 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 10000) in paragraph at lines 14695--14699 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14695--14699 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] Underfull \hbox (badness 2452) in paragraph at lines 15284--15288 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15284--15288 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [237] [238] [239] Underfull \hbox (badness 1092) in paragraph at lines 15457--15462 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [240] [241] [242] Underfull \hbox (badness 6741) in paragraph at lines 15705--15709 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [243] [244] [245] [246] [247] Underfull \hbox (badness 1867) in paragraph at lines 16011--16018 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [248] [249] [250] [251] Underfull \vbox (badness 10000) has occurred while \output is active [252] [253] [254] Underfull \hbox (badness 3679) in paragraph at lines 16421--16423 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 1478) in paragraph at lines 16976--16979 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [263] [264] [265] Underfull \hbox (badness 10000) in paragraph at lines 17229--17231 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [266] [267] [268] [269] [270] [271] [272] [273] [274] [275] Underfull \hbox (badness 1442) in paragraph at lines 17819--17821 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [276] Underfull \hbox (badness 2452) in paragraph at lines 17911--17927 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [277] [278] [279] [280] [281] [282] [283] Underfull \hbox (badness 1248) in paragraph at lines 18325--18328 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [284] [285] [286] [287] Underfull \hbox (badness 4739) in paragraph at lines 18583--18585 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 2469) in paragraph at lines 19600--19605 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and Underfull \hbox (badness 10000) in paragraph at lines 19614--19621 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / [305] Underfull \hbox (badness 10000) in paragraph at lines 19688--19692 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 19688--19692 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [306] [307] Underfull \hbox (badness 1509) in paragraph at lines 19823--19830 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1552) in paragraph at lines 19823--19830 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 19839--19844 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] [318] Underfull \hbox (badness 1264) in paragraph at lines 20572--20577 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [319] Underfull \hbox (badness 4441) in paragraph at lines 20601--20604 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] Underfull \hbox (badness 10000) in paragraph at lines 21327--21329 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] [346] Underfull \hbox (badness 1077) in paragraph at lines 22362--22368 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [347] [348] [349] Underfull \hbox (badness 1484) in paragraph at lines 22523--22531 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [350] [351] [352] [353] Underfull \hbox (badness 2790) in paragraph at lines 22794--22797 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 22794--22797 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [354] [355] [356] [357] Underfull \hbox (badness 1194) in paragraph at lines 23076--23079 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [358] [359] [360] [361] Underfull \hbox (badness 10000) in paragraph at lines 23282--23288 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 7379) in paragraph at lines 23282--23288 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] Underfull \hbox (badness 10000) in paragraph at lines 24242--24244 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [376] [377] [378] [379] Underfull \hbox (badness 1199) in paragraph at lines 24486--24492 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 24486--24492 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [380] [381] [382] [383] [384] [385] [386] [387] [388] Underfull \hbox (badness 1038) in paragraph at lines 25065--25073 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 25074--25077 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25093--25095 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [389] Underfull \hbox (badness 10000) in paragraph at lines 25202--25212 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 25213--25219 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [390] Underfull \hbox (badness 1968) in paragraph at lines 25249--25254 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 25259--25261 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [391] [392] [393] Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 25531--25534 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 25555--25557 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [394] Underfull \hbox (badness 10000) in paragraph at lines 25587--25592 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 25593--25604 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 25605--25608 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3713) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN ma-cOS build), Underfull \hbox (badness 7944) in paragraph at lines 25615--25627 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). Underfull \hbox (badness 2351) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/z i4/m/n/10 "mac.binary.mavericks"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.leo pard"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 25629--25636 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1874) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [395] [396] [397] [398] [399] Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [400] [401] [402] [403] [404] Underfull \hbox (badness 1735) in paragraph at lines 26294--26298 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] Underfull \hbox (badness 2726) in paragraph at lines 26865--26868 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] Underfull \hbox (badness 1052) in paragraph at lines 27692--27697 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [428] [429] [430] [431] [432] Underfull \vbox (badness 10000) has occurred while \output is active [433] [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 1533) in paragraph at lines 28501--28504 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [440] [441] [442] Underfull \hbox (badness 1163) in paragraph at lines 28663--28674 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] Underfull \hbox (badness 10000) in paragraph at lines 30186--30190 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 30186--30190 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 30208--30210 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [467] [468] [469] [470] [471] [472] [473] [474] [475] Underfull \hbox (badness 1655) in paragraph at lines 30756--30758 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] Underfull \hbox (badness 10000) in paragraph at lines 31431--31435 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [487] [488] [489] [490] Underfull \hbox (badness 2302) in paragraph at lines 31671--31678 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 3333) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [491] [492] Underfull \hbox (badness 2261) in paragraph at lines 31827--31832 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 31854--31860 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [493] Underfull \hbox (badness 10000) in paragraph at lines 31930--31935 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] Underfull \vbox (badness 3803) has occurred while \output is active [533] [534] [535] [536] [537] [538] [539] [540] Underfull \hbox (badness 1072) in paragraph at lines 34968--34972 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 34973--34977 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [541] Underfull \hbox (badness 3343) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [542] [543] [544] [545] Underfull \hbox (badness 10000) in paragraph at lines 35311--35317 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1264) in paragraph at lines 35311--35317 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] Underfull \hbox (badness 3333) in paragraph at lines 37155--37160 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [576] [577] [578] [579] [580] [581] Underfull \vbox (badness 10000) has occurred while \output is active [582] [583] [584] [585] Underfull \hbox (badness 1472) in paragraph at lines 37778--37781 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] Underfull \vbox (badness 3803) has occurred while \output is active [599] Underfull \hbox (badness 10000) in paragraph at lines 38643--38647 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., [600] [601] [602] [603] Underfull \hbox (badness 10000) in paragraph at lines 38891--38894 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [604] [605] Underfull \hbox (badness 10000) in paragraph at lines 39009--39013 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [606] Underfull \hbox (badness 10000) in paragraph at lines 39071--39075 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [607] [608] [609] [610] [611] [612] [613] [614] Underfull \hbox (badness 4013) in paragraph at lines 39584--39586 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / www . twinsun . com / tz / tz-[]link . [615] [616] [617] [618] [619] Underfull \vbox (badness 3803) has occurred while \output is active [620] [621] [622] [623] [624] [625] [626] [627] Underfull \hbox (badness 3460) in paragraph at lines 40424--40427 []\T1/ptm/m/n/10 a [][]con-nec-tion[][][], or a char-ac-ter string nam-ing the file to print to (via Underfull \hbox (badness 1990) in paragraph at lines 40431--40439 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 40431--40439 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [628] [629] [630] [631] Underfull \hbox (badness 10000) in paragraph at lines 40708--40711 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. [632] [633] [634] [635] Underfull \hbox (badness 1917) in paragraph at lines 40936--40943 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] Underfull \hbox (badness 3668) in paragraph at lines 41615--41617 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [647] Underfull \hbox (badness 2401) in paragraph at lines 41721--41725 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [648] [649] [650] Underfull \hbox (badness 2111) in paragraph at lines 41897--41902 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 7362) in paragraph at lines 41913--41918 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [651] [652] [653] [654] [655] [656] [657] [658] [659] Underfull \hbox (badness 5417) in paragraph at lines 42470--42474 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [660] Underfull \hbox (badness 10000) in paragraph at lines 42531--42535 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [661]) (./compiler-pkg.tex [662] Chapter 2. [663] [664] [665] [666]) (./datasets-pkg.tex Chapter 3. [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] Underfull \vbox (badness 1515) has occurred while \output is active [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] Underfull \hbox (badness 6658) in paragraph at lines 3954--3956 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h ttp : / / www . ltrr . arizona . edu / ~hallman / [734] Underfull \vbox (badness 10000) has occurred while \output is active [735] [736] [737] [738] Underfull \vbox (badness 10000) has occurred while \output is active [739] [740] [741] [742] [743] [744] Overfull \vbox (18.9959pt too high) has occurred while \output is active [745] [746] [747]) (./grDevices-pkg.tex [748] Chapter 4. [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] Underfull \hbox (badness 5175) in paragraph at lines 1069--1071 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [766] [767] [768] [769] Underfull \hbox (badness 1852) in paragraph at lines 1266--1269 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [770] [771] [772] Underfull \hbox (badness 1490) in paragraph at lines 1472--1477 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [773] [774] Underfull \hbox (badness 10000) in paragraph at lines 1595--1599 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [775] [776] [777] [778] Underfull \hbox (badness 1325) in paragraph at lines 1878--1888 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [779] [780] Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [781] [782] [783] Underfull \hbox (badness 6758) in paragraph at lines 2144--2147 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [784] [785] [786] [787] [788] [789] [790] [791] [792] Underfull \hbox (badness 10000) in paragraph at lines 2732--2733 [793] [794] [795] [796] [797] [798] [799] [800] Underfull \hbox (badness 10000) in paragraph at lines 3230--3235 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [801] [802] [803] [804] Underfull \hbox (badness 3302) in paragraph at lines 3489--3492 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3503--3505 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1067) in paragraph at lines 4326--4333 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [818] [819] Underfull \hbox (badness 3364) in paragraph at lines 4486--4488 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 https : / / partners . adobe . com / public / [820] Underfull \hbox (badness 1789) in paragraph at lines 4563--4565 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [821] Underfull \hbox (badness 1377) in paragraph at lines 4613--4618 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [822] Underfull \hbox (badness 2671) in paragraph at lines 4640--4648 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4689--4696 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4707--4709 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [823] [824] Underfull \hbox (badness 1057) in paragraph at lines 4818--4823 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and [825] Underfull \hbox (badness 7344) in paragraph at lines 4878--4880 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [826] [827] Underfull \hbox (badness 2035) in paragraph at lines 5002--5011 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [828] Underfull \hbox (badness 10000) in paragraph at lines 5070--5077 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5070--5077 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [829] [830] [831] Underfull \hbox (badness 1546) in paragraph at lines 5212--5220 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [832] Underfull \hbox (badness 1648) in paragraph at lines 5289--5293 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [833] [834] [835] [836] [837] [838] [839] Underfull \hbox (badness 10000) in paragraph at lines 5741--5744 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [840] [841] [842] [843] [844] [845] Underfull \hbox (badness 1189) in paragraph at lines 6138--6140 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [846] [847] Underfull \hbox (badness 10000) in paragraph at lines 6236--6238 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [848] [849] [850] [851] Underfull \hbox (badness 3780) in paragraph at lines 6527--6533 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [852] [853] [854] Underfull \hbox (badness 2680) in paragraph at lines 6728--6730 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [855] [856] [857]) (./graphics-pkg.tex [858] Chapter 5. [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [870] [871] [872] [873] Underfull \vbox (badness 3803) has occurred while \output is active [874] [875] [876] [877] [878] [879] Underfull \hbox (badness 4634) in paragraph at lines 1255--1258 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 1009) in paragraph at lines 2289--2296 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] Underfull \vbox (badness 10000) has occurred while \output is active [919] [920] [921] [922] Underfull \hbox (badness 1867) in paragraph at lines 3931--3935 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [923] [924] [925] [926] [927] [928] [929] [930] Underfull \hbox (badness 1924) in paragraph at lines 4378--4383 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain Underfull \hbox (badness 2529) in paragraph at lines 4409--4412 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [931] [932] [933] [934] [935] Underfull \hbox (badness 10000) in paragraph at lines 4759--4765 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4759--4765 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [936] [937] Underfull \hbox (badness 10000) in paragraph at lines 4890--4893 [938 >/library/graphics/help/figures/mai.pdf>] Underfull \hbox (badness 10000) in paragraph at lines 4951--4953 Underfull \vbox (badness 10000) has occurred while \output is active [939] [940 >/library/graphics/help/figures/oma.pdf>] [941] Underfull \hbox (badness 10000) in paragraph at lines 5141--5143 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [942] Underfull \vbox (badness 3803) has occurred while \output is active [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6612--6613 [][] [965] [966 >/library/graphics/help/figures/pch .pdf>] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] Underfull \hbox (badness 1048) in paragraph at lines 7321--7326 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [977] [978] Underfull \hbox (badness 1102) in paragraph at lines 7437--7440 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] Underfull \hbox (badness 1043) in paragraph at lines 8272--8276 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly en-larged) usual plot-ting sym-bol (\T1/zi4/m/n/10 pch\T1/ptm/m/n/10 ) is drawn . For [993] [994] [995] [996] [997] [998] [999] Underfull \hbox (badness 10000) in paragraph at lines 8675--8677 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8677--8679 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [1000]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.8757 \HeaderA{units}{Graphical Units}{units} [1001] [1002] [1003] [1004]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [1005] [1006] [1007] [1008] [1009] [1010] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 4279) in paragraph at lines 970--979 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] Underfull \vbox (badness 3803) has occurred while \output is active [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] Underfull \hbox (badness 1067) in paragraph at lines 4340--4343 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1078] [1079] [1080] [1081] Underfull \hbox (badness 7256) in paragraph at lines 4585--4587 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] Underfull \hbox (badness 10000) in paragraph at lines 5862--5868 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] Underfull \hbox (badness 7649) in paragraph at lines 6341--6344 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1112] [1113] [1114] [1115]) (./methods-pkg.tex [1116] Chapter 7. [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \vbox (badness 3803) has occurred while \output is active [1125] Underfull \vbox (badness 10000) has occurred while \output is active [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] Underfull \hbox (badness 2237) in paragraph at lines 1386--1388 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] Underfull \hbox (badness 1077) in paragraph at lines 1933--1940 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests [1144] Underfull \hbox (badness 10000) in paragraph at lines 1982--1987 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1982--1987 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1145] [1146] [1147] Underfull \hbox (badness 1242) in paragraph at lines 2215--2220 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1148] [1149] [1150] [1151] [1152] Underfull \hbox (badness 10000) in paragraph at lines 2575--2578 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1153] [1154] Underfull \hbox (badness 1132) in paragraph at lines 2715--2719 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1155] Underfull \hbox (badness 1033) in paragraph at lines 2747--2752 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 1102) in paragraph at lines 3304--3306 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1163] [1164] [1165] [1166] [1167] [1168] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1169] Overfull \hbox (123.02902pt too wide) in paragraph at lines 3765--3766 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longitude = "numeric", altitude = "numeric")) Underfull \hbox (badness 10000) in paragraph at lines 3765--3766 [1170] Overfull \hbox (16.41006pt too wide) in paragraph at lines 3849--3850 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = "numeric") [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 1436) in paragraph at lines 4446--4449 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4475--4481 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4475--4481 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1181] Underfull \hbox (badness 1092) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] Underfull \vbox (badness 10000) has occurred while \output is active [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 5358--5359 []\T1/zi4/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1193] Underfull \hbox (badness 4036) in paragraph at lines 5440--5443 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1194] Underfull \hbox (badness 3803) in paragraph at lines 5515--5517 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1195] [1196] [1197] [1198] Underfull \hbox (badness 1087) in paragraph at lines 5747--5752 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] Underfull \hbox (badness 1675) in paragraph at lines 6454--6460 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1207] [1208] [1209] [1210] Underfull \vbox (badness 10000) has occurred while \output is active [1211] [1212] [1213] [1214]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6976 \aliasA{S4}{S3Part}{S4} [1215] [1216] [1217]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7232 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7234 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7235 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7237 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7238 \aliasA{Summary}{S4groupGeneric}{Summary} [1218] Underfull \hbox (badness 2050) in paragraph at lines 7299--7303 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1219] [1220] [1221] Underfull \hbox (badness 1286) in paragraph at lines 7487--7489 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] Underfull \vbox (badness 10000) has occurred while \output is active [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] Underfull \hbox (badness 1852) in paragraph at lines 10567--10571 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1264] [1265] [1266] [1267]) (./parallel-pkg.tex [1268] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 3386) in paragraph at lines 1268--1271 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1289] [1290] [1291]) (./splines-pkg.tex [1292] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307]) (./stats-pkg.tex [1308] Chapter 10. [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1412) in paragraph at lines 848--850 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] Underfull \hbox (badness 2503) in paragraph at lines 1329--1332 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1330] [1331] [1332] Underfull \hbox (badness 10000) in paragraph at lines 1508--1512 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] Underfull \hbox (badness 3965) in paragraph at lines 2168--2170 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1344] [1345] [1346] [1347] [1348] Underfull \hbox (badness 3965) in paragraph at lines 2510--2512 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] Underfull \hbox (badness 2726) in paragraph at lines 3224--3240 \T1/ptm/m/n/10 We have slightly tweaked the orig-i-nal ``TOMS 708'' al-go-rithm , and en-hanced for [1360] [1361] Underfull \hbox (badness 2503) in paragraph at lines 3354--3357 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] Underfull \hbox (badness 3989) in paragraph at lines 4582--4589 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] Underfull \hbox (badness 2556) in paragraph at lines 5193--5196 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5210--5212 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1392] [1393] [1394] [1395] Underfull \hbox (badness 1142) in paragraph at lines 5451--5463 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1396] [1397] [1398] Underfull \hbox (badness 2503) in paragraph at lines 5599--5603 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] Underfull \hbox (badness 8132) in paragraph at lines 6102--6107 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1407] [1408] [1409] [1410] [1411] Underfull \hbox (badness 7081) in paragraph at lines 6380--6383 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6384--6386 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1412] [1413] [1414] [1415] [1416] Underfull \vbox (badness 3803) has occurred while \output is active [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] Underfull \hbox (badness 10000) in paragraph at lines 7225--7228 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] Underfull \hbox (badness 2626) in paragraph at lines 8860--8863 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1452] Underfull \hbox (badness 2503) in paragraph at lines 8960--8964 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1453] [1454] [1455] [1456] [1457] [1458] Overfull \hbox (3.53955pt too wide) in paragraph at lines 9309--9311 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 4518) in paragraph at lines 10235--10240 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1473] [1474] [1475] [1476] [1477] Underfull \hbox (badness 2142) in paragraph at lines 10577--10580 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10596--10599 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1478] Underfull \hbox (badness 1708) in paragraph at lines 10658--10662 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 1694) in paragraph at lines 11054--11057 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1485] Underfull \hbox (badness 1867) in paragraph at lines 11073--11082 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1486] [1487] [1488] [1489] [1490] Underfull \hbox (badness 10000) in paragraph at lines 11380--11383 []\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds [][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq uiv-a-lent of [1491] [1492]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.hat}) has been already used, duplicate ignored \relax l.11534 \aliasA{hat}{influence.measures}{hat} [1493] [1494] Underfull \hbox (badness 1484) in paragraph at lines 11665--11667 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 4441) in paragraph at lines 12248--12250 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12255--12257 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1505] [1506] [1507] [1508] [1509] [1510] Underfull \hbox (badness 2894) in paragraph at lines 12589--12593 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] Underfull \hbox (badness 4518) in paragraph at lines 13284--13289 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] Underfull \hbox (badness 4518) in paragraph at lines 13931--13936 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1532] [1533] [1534] Underfull \hbox (badness 10000) in paragraph at lines 14069--14073 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 14076--14078 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] Underfull \hbox (badness 2503) in paragraph at lines 15138--15142 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] Underfull \hbox (badness 1584) in paragraph at lines 15650--15656 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] Underfull \hbox (badness 2359) in paragraph at lines 17287--17289 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1587] Underfull \vbox (badness 3803) has occurred while \output is active [1588] Underfull \vbox (badness 10000) has occurred while \output is active [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 1377) in paragraph at lines 18198--18203 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18203--18206 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on [1602] Underfull \hbox (badness 1454) in paragraph at lines 18216--18220 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18224--18228 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] Underfull \hbox (badness 1337) in paragraph at lines 18840--18843 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 3049) in paragraph at lines 19326--19330 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1622] [1623] [1624] [1625] Underfull \hbox (badness 5563) in paragraph at lines 19576--19578 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19579--19582 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 2503) in paragraph at lines 19954--19957 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1632] Underfull \hbox (badness 10000) in paragraph at lines 19981--19983 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 10000) in paragraph at lines 21029--21035 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] Underfull \hbox (badness 1337) in paragraph at lines 22367--22373 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Overfull \hbox (27.74408pt too wide) in paragraph at lines 22912--22912 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1681] [1682] [1683] [1684] [1685] Underfull \hbox (badness 10000) in paragraph at lines 23162--23165 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Underfull \hbox (badness 10000) in paragraph at lines 23747--23750 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1695] Underfull \hbox (badness 3690) in paragraph at lines 23798--23802 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] Underfull \hbox (badness 3439) in paragraph at lines 24268--24274 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1705] [1706] [1707] Underfull \hbox (badness 1867) in paragraph at lines 24465--24467 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallback = use.fallback) \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 PP <- sum(!is.na([][]coef[][][](object))) \T1/ptm/m/n/10 -- wher e in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was Underfull \hbox (badness 1132) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 length(coef(object)) \T1/ptm/m/n/10 which is too large in case o f un-de-ter-mined co-ef-fi-cients, e.g., for [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 10000) in paragraph at lines 24950--24955 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 3514) in paragraph at lines 25992--25997 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1733] Underfull \hbox (badness 3514) in paragraph at lines 26054--26059 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1734] Underfull \hbox (badness 3514) in paragraph at lines 26111--26116 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1735] Underfull \hbox (badness 3514) in paragraph at lines 26172--26178 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1736] [1737] [1738] [1739] Underfull \hbox (badness 3514) in paragraph at lines 26385--26390 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1740] Underfull \hbox (badness 3514) in paragraph at lines 26441--26446 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1741] Underfull \hbox (badness 3514) in paragraph at lines 26499--26504 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1742] Underfull \hbox (badness 3514) in paragraph at lines 26554--26559 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Underfull \hbox (badness 6691) in paragraph at lines 26623--26628 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 5431) in paragraph at lines 27753--27755 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1763] [1764] [1765] Underfull \hbox (badness 5431) in paragraph at lines 27963--27966 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1766] [1767] [1768] [1769] [1770] [1771] Underfull \hbox (badness 1337) in paragraph at lines 28277--28281 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1772] [1773] Underfull \hbox (badness 10000) in paragraph at lines 28394--28397 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1774] [1775] Underfull \hbox (badness 1616) in paragraph at lines 28577--28580 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] Underfull \hbox (badness 10000) in paragraph at lines 29703--29707 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1795] [1796] [1797] Underfull \vbox (badness 10000) has occurred while \output is active [1798] [1799] [1800] Underfull \hbox (badness 1337) in paragraph at lines 30067--30071 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 30551--30555 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] Underfull \hbox (badness 2142) in paragraph at lines 30628--30633 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 x \T1/ptm/m/n/10 (and \T1/zi4/m/n/10 y \T1 /ptm/m/n/10 if ap-pli-ca-ble) are valid, the func-tion now al-ways re-turns, al so in the [1810] Underfull \hbox (badness 5161) in paragraph at lines 30650--30652 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 10000) in paragraph at lines 31032--31037 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1817] [1818]) (./stats4-pkg.tex Chapter 11. [1819] [1820] [1821] [1822] [1823] [1824]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1825] [1826] [1827] [1828]) (./tcltk-pkg.tex Chapter 12. [1829] [1830] [1831] [1832] [1833] [1834] [1835] Underfull \vbox (badness 10000) has occurred while \output is active [1836] Underfull \vbox (badness 10000) has occurred while \output is active [1837] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] [1848] Underfull \hbox (badness 3019) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the ma-cOS GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 ( whose [1849]) (./tools-pkg.tex [1850] Chapter 13. [1851] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1852] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1853] [1854] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1855] [1856] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 1635) in paragraph at lines 1053--1055 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1868] Underfull \hbox (badness 4441) in paragraph at lines 1131--1141 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1869] Underfull \hbox (badness 1014) in paragraph at lines 1153--1155 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1159--1161 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1196--1199 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1196--1199 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1870] [1871] [1872] Underfull \hbox (badness 10000) in paragraph at lines 1365--1367 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1873] [1874] [1875] Underfull \hbox (badness 2293) in paragraph at lines 1539--1541 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1876] [1877] Underfull \hbox (badness 7981) in paragraph at lines 1677--1682 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1684--1686 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1878] [1879] [1880] [1881]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1881 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1882] [1883] [1884] [1885] [1886] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2183--2183 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1887] [1888] [1889] Underfull \hbox (badness 7981) in paragraph at lines 2352--2358 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1890] [1891] [1892] [1893] [1894] [1895] [1896] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2817. [1897] [1898] [1899] [1900] Underfull \hbox (badness 1424) in paragraph at lines 3099--3101 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] Underfull \hbox (badness 10000) in paragraph at lines 3799--3801 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1913] [1914] Underfull \hbox (badness 10000) in paragraph at lines 3938--3941 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1915] [1916] Underfull \hbox (badness 1137) in paragraph at lines 4036--4038 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1917] [1918] [1919] Underfull \hbox (badness 1838) in paragraph at lines 4245--4251 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4245--4251 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1920] Underfull \hbox (badness 5726) in paragraph at lines 4325--4330 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 4325--4330 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1921] [1922] [1923] Underfull \hbox (badness 2197) in paragraph at lines 4474--4484 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 2229) in paragraph at lines 4474--4484 \T1/ptm/m/n/10 fields will al-ways be in-cluded, plus the file name in field \T 1/zi4/m/sl/10 "File" \T1/ptm/m/n/10 if [1924] Underfull \hbox (badness 1571) in paragraph at lines 4537--4541 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1925] [1926] [1927]) (./utils-pkg.tex [1928] Chapter 14. [1929] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1930] [1931] [1932] [1933] [1934] [1935] [1936] Underfull \hbox (badness 10000) in paragraph at lines 546--552 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 546--552 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1937] [1938] Underfull \hbox (badness 5847) in paragraph at lines 660--666 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 660--666 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1939] Underfull \hbox (badness 3861) in paragraph at lines 728--733 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1940] [1941] [1942] Underfull \hbox (badness 1430) in paragraph at lines 893--900 \T1/ptm/m/n/10 in-di-cat-ing that the bib-tex code should be given in ad-di-tio n to the for- Underfull \hbox (badness 1931) in paragraph at lines 893--900 \T1/ptm/m/n/10 mat-ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not mo re than $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 1038) in paragraph at lines 893--900 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x", 1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 893--900 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1943] [1944] [1945] [1946] [1947] [1948] [1949] Underfull \hbox (badness 1371) in paragraph at lines 1375--1377 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 2057) in paragraph at lines 1863--1865 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1958] Underfull \hbox (badness 10000) in paragraph at lines 1958--1960 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1959] [1960] Underfull \hbox (badness 5189) in paragraph at lines 2060--2062 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1961] Underfull \vbox (badness 3803) has occurred while \output is active [1962] [1963] [1964] Underfull \hbox (badness 1661) in paragraph at lines 2278--2285 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1748) in paragraph at lines 2294--2297 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 10000) in paragraph at lines 2703--2707 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing Overfull \hbox (59.4187pt too wide) in paragraph at lines 2708--2711 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](..., header = TRUE, sep = ";", as.is=FALSE)\T1/ptm/m/n/10 , [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] Underfull \hbox (badness 1430) in paragraph at lines 3385--3393 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3434--3440 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] [2011] Underfull \hbox (badness 1371) in paragraph at lines 5271--5273 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [2012] Underfull \hbox (badness 1502) in paragraph at lines 5360--5365 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5360--5365 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2013] [2014] [2015] Underfull \hbox (badness 10000) in paragraph at lines 5533--5542 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2016] Underfull \hbox (badness 2150) in paragraph at lines 5596--5599 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2017] [2018] Underfull \hbox (badness 3118) in paragraph at lines 5733--5735 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5766--5770 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [2019] [2020] Underfull \hbox (badness 1325) in paragraph at lines 5874--5878 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [2021] Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [2022] Underfull \hbox (badness 3219) in paragraph at lines 6030--6037 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [2023] Underfull \hbox (badness 10000) in paragraph at lines 6110--6115 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] [2045] [2046] [2047] Underfull \hbox (badness 10000) in paragraph at lines 7527--7529 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7532--7537 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 1789) in paragraph at lines 8087--8089 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] Underfull \hbox (badness 1097) in paragraph at lines 8916--8919 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2069] Underfull \hbox (badness 3000) in paragraph at lines 9052--9057 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 2134) in paragraph at lines 9635--9640 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [2079] [2080] [2081] [2082] [2083] [2084] [2085] Underfull \hbox (badness 5077) in paragraph at lines 10060--10064 []\T1/zi4/m/sl/10 as.roman \T1/ptm/m/n/10 cre-ates ob-jects of class \T1/zi4/m/ sl/10 "roman" \T1/ptm/m/n/10 which are in-ter-nally rep-re-sented as in-te- Underfull \hbox (badness 2269) in paragraph at lines 10060--10064 \T1/ptm/m/n/10 gers, and have suit-able meth-ods for print-ing, for-mat-ting, s ub-set-ting, co-er-cion, etc, see Underfull \hbox (badness 2469) in paragraph at lines 10072--10076 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 10072--10076 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2086] [2087] [2088] [2089] [2090] Overfull \hbox (18.77168pt too wide) in paragraph at lines 10366--10366 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2091] Underfull \hbox (badness 10000) in paragraph at lines 10429--10431 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [2092] [2093] [2094] Underfull \hbox (badness 2150) in paragraph at lines 10605--10607 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2095] [2096] [2097] [2098] Underfull \hbox (badness 10000) in paragraph at lines 10824--10828 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 10855--10861 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2099] [2100] Underfull \hbox (badness 2096) in paragraph at lines 10973--10976 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10977--10980 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [2101] Underfull \hbox (badness 1009) in paragraph at lines 11049--11060 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2102] [2103] [2104] [2105] [2106] Underfull \hbox (badness 3780) in paragraph at lines 11355--11359 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 11374--11377 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 2818) in paragraph at lines 11746--11751 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 11755--11758 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2113] [2114] [2115] [2116] [2117] Underfull \hbox (badness 10000) in paragraph at lines 12018--12020 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2118] [2119] Underfull \hbox (badness 1057) in paragraph at lines 12175--12182 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, [2120] [2121] [2122] [2123] Underfull \hbox (badness 6510) in paragraph at lines 12434--12438 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 12441--12444 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 12441--12444 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Underfull \hbox (badness 10000) in paragraph at lines 12983--12985 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 12986--12988 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2132] Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 1297) in paragraph at lines 13016--13021 \T1/zi4/m/sl/10 available.packages(contriburl = contriburl, method = method) \T 1/ptm/m/n/10 and hence by Underfull \hbox (badness 10000) in paragraph at lines 13045--13048 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2133] [2134] [2135] [2136] Overfull \hbox (23.85939pt too wide) in paragraph at lines 13287--13290 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2137] [2138] Underfull \hbox (badness 1454) in paragraph at lines 13364--13368 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2139] Underfull \hbox (badness 10000) in paragraph at lines 13434--13436 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2140] [2141] [2142]) (./refman.ind [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190] [2191] Overfull \hbox (33.3567pt too wide) in paragraph at lines 8522--8524 []\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] Overfull \hbox (5.8567pt too wide) in paragraph at lines 11506--11508 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 11508--11510 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 11510--11512 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213]) (./refman.aux) Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do es not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/ texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb> Output written on refman.pdf (2244 pages, 5997087 bytes). Transcript written on refman.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2017-04-15> Babel <3.15> and hyphenation patterns for 3 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.112, 2017/01/04 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 366. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 366. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file refman.idx (./refman.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./refman.out) (./refman.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] (./refman.toc (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29]) [30] (./base-pkg.tex Chapter 1. [1] [2] Underfull \hbox (badness 2547) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 296--300 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] Underfull \hbox (badness 3977) in paragraph at lines 385--388 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [7] [8] Underfull \hbox (badness 2556) in paragraph at lines 533--539 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1144--1147 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1901--1901 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2086--2088 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Underfull \vbox (badness 10000) has occurred while \output is active [50] [51] [52] [53] [54] [55] [56] Underfull \hbox (badness 10000) in paragraph at lines 3607--3609 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [57] [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 3848--3848 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 4823--4825 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Overfull \hbox (5.27168pt too wide) in paragraph at lines 5954--5954 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [94] [95] [96] Underfull \hbox (badness 2096) in paragraph at lines 6137--6150 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [97] [98] [99] Overfull \hbox (56.34871pt too wide) in paragraph at lines 6341--6343 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 6483--6486 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [102] [103] Underfull \hbox (badness 1442) in paragraph at lines 6646--6652 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [104] Underfull \hbox (badness 3568) in paragraph at lines 6708--6715 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] [109] Underfull \hbox (badness 1077) in paragraph at lines 7019--7025 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7019--7025 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [110] [111] [112] [113] [114] Underfull \hbox (badness 2096) in paragraph at lines 7360--7364 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [115] [116] Underfull \hbox (badness 3000) in paragraph at lines 7453--7455 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7478--7481 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [117] [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 7733--7743 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [121] [122] Underfull \hbox (badness 4479) in paragraph at lines 7804--7814 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1394) in paragraph at lines 9477--9482 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [148] [149] [150] [151] [152] Underfull \hbox (badness 1194) in paragraph at lines 9822--9827 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9822--9827 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [153] [154] Underfull \hbox (badness 1735) in paragraph at lines 9960--9964 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [155] [156] [157] [158] [159] [160] [161] Underfull \hbox (badness 2150) in paragraph at lines 10375--10378 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 10389--10397 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2735) in paragraph at lines 10429--10436 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] Underfull \hbox (badness 4569) in paragraph at lines 11493--11497 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11493--11497 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [178] [179] [180] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 2698) in paragraph at lines 12070--12079 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 12070--12079 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [187] [188] [189] [190] [191] Underfull \vbox (badness 3803) has occurred while \output is active [192] [193] [194] [195] [196] Underfull \hbox (badness 6236) in paragraph at lines 12729--12732 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [197] [198] [199] [200] [201] [202] Underfull \hbox (badness 2253) in paragraph at lines 13141--13143 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [203] Underfull \hbox (badness 1565) in paragraph at lines 13212--13216 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [204] Underfull \hbox (badness 10000) in paragraph at lines 13256--13258 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [205] [206] Underfull \hbox (badness 1466) in paragraph at lines 13396--13399 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [207] [208] Underfull \hbox (badness 10000) in paragraph at lines 13514--13518 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13525--13528 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [209] [210] [211] [212] Underfull \hbox (badness 3965) in paragraph at lines 13788--13792 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] Underfull \hbox (badness 4429) in paragraph at lines 14550--14553 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [225] [226] Underfull \hbox (badness 10000) in paragraph at lines 14650--14652 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14656--14660 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 10000) in paragraph at lines 14695--14699 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14695--14699 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] Underfull \hbox (badness 2452) in paragraph at lines 15284--15288 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15284--15288 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [237] [238] [239] Underfull \hbox (badness 1092) in paragraph at lines 15457--15462 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [240] [241] [242] Underfull \hbox (badness 6741) in paragraph at lines 15705--15709 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [243] [244] [245] [246] [247] Underfull \hbox (badness 1867) in paragraph at lines 16011--16018 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [248] [249] [250] [251] Underfull \vbox (badness 10000) has occurred while \output is active [252] [253] [254] Underfull \hbox (badness 3679) in paragraph at lines 16421--16423 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 1478) in paragraph at lines 16976--16979 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [263] [264] [265] Underfull \hbox (badness 10000) in paragraph at lines 17229--17231 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [266] [267] [268] [269] [270] [271] [272] [273] [274] [275] Underfull \hbox (badness 1442) in paragraph at lines 17819--17821 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [276] Underfull \hbox (badness 2452) in paragraph at lines 17911--17927 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [277] [278] [279] [280] [281] [282] [283] Underfull \hbox (badness 1248) in paragraph at lines 18325--18328 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [284] [285] [286] [287] Underfull \hbox (badness 4739) in paragraph at lines 18583--18585 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 2469) in paragraph at lines 19600--19605 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and Underfull \hbox (badness 10000) in paragraph at lines 19614--19621 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / [305] Underfull \hbox (badness 10000) in paragraph at lines 19688--19692 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 19688--19692 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [306] [307] Underfull \hbox (badness 1509) in paragraph at lines 19823--19830 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1552) in paragraph at lines 19823--19830 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 19839--19844 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] [318] Underfull \hbox (badness 1264) in paragraph at lines 20572--20577 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [319] Underfull \hbox (badness 4441) in paragraph at lines 20601--20604 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] Underfull \hbox (badness 10000) in paragraph at lines 21327--21329 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] [346] Underfull \hbox (badness 1077) in paragraph at lines 22362--22368 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [347] [348] [349] Underfull \hbox (badness 1484) in paragraph at lines 22523--22531 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [350] [351] [352] [353] Underfull \hbox (badness 2790) in paragraph at lines 22794--22797 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 22794--22797 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [354] [355] [356] [357] Underfull \hbox (badness 1194) in paragraph at lines 23076--23079 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [358] [359] [360] [361] Underfull \hbox (badness 10000) in paragraph at lines 23282--23288 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 7379) in paragraph at lines 23282--23288 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] Underfull \hbox (badness 10000) in paragraph at lines 24242--24244 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [376] [377] [378] [379] Underfull \hbox (badness 1199) in paragraph at lines 24486--24492 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 24486--24492 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [380] [381] [382] [383] [384] [385] [386] [387] [388] Underfull \hbox (badness 1038) in paragraph at lines 25065--25073 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 25074--25077 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25093--25095 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [389] Underfull \hbox (badness 10000) in paragraph at lines 25202--25212 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 25213--25219 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [390] Underfull \hbox (badness 1968) in paragraph at lines 25249--25254 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 25259--25261 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [391] [392] [393] Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 25531--25534 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 25555--25557 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [394] Underfull \hbox (badness 10000) in paragraph at lines 25587--25592 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 25593--25604 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 25605--25608 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3713) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN ma-cOS build), Underfull \hbox (badness 7944) in paragraph at lines 25615--25627 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). Underfull \hbox (badness 2351) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/z i4/m/n/10 "mac.binary.mavericks"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.leo pard"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 25629--25636 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1874) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [395] [396] [397] [398] [399] Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [400] [401] [402] [403] [404] Underfull \hbox (badness 1735) in paragraph at lines 26294--26298 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] Underfull \hbox (badness 2726) in paragraph at lines 26865--26868 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] Underfull \hbox (badness 1052) in paragraph at lines 27692--27697 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [428] [429] [430] [431] [432] Underfull \vbox (badness 10000) has occurred while \output is active [433] [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 1533) in paragraph at lines 28501--28504 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [440] [441] [442] Underfull \hbox (badness 1163) in paragraph at lines 28663--28674 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] Underfull \hbox (badness 10000) in paragraph at lines 30186--30190 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 30186--30190 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 30208--30210 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [467] [468] [469] [470] [471] [472] [473] [474] [475] Underfull \hbox (badness 1655) in paragraph at lines 30756--30758 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] Underfull \hbox (badness 10000) in paragraph at lines 31431--31435 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [487] [488] [489] [490] Underfull \hbox (badness 2302) in paragraph at lines 31671--31678 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 3333) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [491] [492] Underfull \hbox (badness 2261) in paragraph at lines 31827--31832 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 31854--31860 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [493] Underfull \hbox (badness 10000) in paragraph at lines 31930--31935 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] Underfull \vbox (badness 3803) has occurred while \output is active [533] [534] [535] [536] [537] [538] [539] [540] Underfull \hbox (badness 1072) in paragraph at lines 34968--34972 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 34973--34977 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [541] Underfull \hbox (badness 3343) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [542] [543] [544] [545] Underfull \hbox (badness 10000) in paragraph at lines 35311--35317 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1264) in paragraph at lines 35311--35317 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] Underfull \hbox (badness 3333) in paragraph at lines 37155--37160 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [576] [577] [578] [579] [580] [581] Underfull \vbox (badness 10000) has occurred while \output is active [582] [583] [584] [585] Underfull \hbox (badness 1472) in paragraph at lines 37778--37781 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] Underfull \vbox (badness 3803) has occurred while \output is active [599] Underfull \hbox (badness 10000) in paragraph at lines 38643--38647 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., [600] [601] [602] [603] Underfull \hbox (badness 10000) in paragraph at lines 38891--38894 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [604] [605] Underfull \hbox (badness 10000) in paragraph at lines 39009--39013 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [606] Underfull \hbox (badness 10000) in paragraph at lines 39071--39075 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [607] [608] [609] [610] [611] [612] [613] [614] Underfull \hbox (badness 4013) in paragraph at lines 39584--39586 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / www . twinsun . com / tz / tz-[]link . [615] [616] [617] [618] [619] Underfull \vbox (badness 3803) has occurred while \output is active [620] [621] [622] [623] [624] [625] [626] [627] Underfull \hbox (badness 3460) in paragraph at lines 40424--40427 []\T1/ptm/m/n/10 a [][]con-nec-tion[][][], or a char-ac-ter string nam-ing the file to print to (via Underfull \hbox (badness 1990) in paragraph at lines 40431--40439 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 40431--40439 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [628] [629] [630] [631] Underfull \hbox (badness 10000) in paragraph at lines 40708--40711 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. [632] [633] [634] [635] Underfull \hbox (badness 1917) in paragraph at lines 40936--40943 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] Underfull \hbox (badness 3668) in paragraph at lines 41615--41617 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [647] Underfull \hbox (badness 2401) in paragraph at lines 41721--41725 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [648] [649] [650] Underfull \hbox (badness 2111) in paragraph at lines 41897--41902 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 7362) in paragraph at lines 41913--41918 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [651] [652] [653] [654] [655] [656] [657] [658] [659] Underfull \hbox (badness 5417) in paragraph at lines 42470--42474 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [660] Underfull \hbox (badness 10000) in paragraph at lines 42531--42535 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [661]) (./compiler-pkg.tex [662] Chapter 2. [663] [664] [665] [666]) (./datasets-pkg.tex Chapter 3. [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] Underfull \vbox (badness 1515) has occurred while \output is active [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] Underfull \hbox (badness 6658) in paragraph at lines 3954--3956 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h ttp : / / www . ltrr . arizona . edu / ~hallman / [734] Underfull \vbox (badness 10000) has occurred while \output is active [735] [736] [737] [738] Underfull \vbox (badness 10000) has occurred while \output is active [739] [740] [741] [742] [743] [744] Overfull \vbox (18.9959pt too high) has occurred while \output is active [745] [746] [747]) (./grDevices-pkg.tex [748] Chapter 4. [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] Underfull \hbox (badness 5175) in paragraph at lines 1069--1071 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [766] [767] [768] [769] Underfull \hbox (badness 1852) in paragraph at lines 1266--1269 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [770] [771] [772] Underfull \hbox (badness 1490) in paragraph at lines 1472--1477 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [773] [774] Underfull \hbox (badness 10000) in paragraph at lines 1595--1599 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [775] [776] [777] [778] Underfull \hbox (badness 1325) in paragraph at lines 1878--1888 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [779] [780] Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [781] [782] [783] Underfull \hbox (badness 6758) in paragraph at lines 2144--2147 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [784] [785] [786] [787] [788] [789] [790] [791] [792] Underfull \hbox (badness 10000) in paragraph at lines 2732--2733 [793] [794] [795] [796] [797] [798] [799] [800] Underfull \hbox (badness 10000) in paragraph at lines 3230--3235 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [801] [802] [803] [804] Underfull \hbox (badness 3302) in paragraph at lines 3489--3492 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3503--3505 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1067) in paragraph at lines 4326--4333 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [818] [819] Underfull \hbox (badness 3364) in paragraph at lines 4486--4488 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 https : / / partners . adobe . com / public / [820] Underfull \hbox (badness 1789) in paragraph at lines 4563--4565 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [821] Underfull \hbox (badness 1377) in paragraph at lines 4613--4618 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [822] Underfull \hbox (badness 2671) in paragraph at lines 4640--4648 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4689--4696 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4707--4709 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [823] [824] Underfull \hbox (badness 1057) in paragraph at lines 4818--4823 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and [825] Underfull \hbox (badness 7344) in paragraph at lines 4878--4880 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [826] [827] Underfull \hbox (badness 2035) in paragraph at lines 5002--5011 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [828] Underfull \hbox (badness 10000) in paragraph at lines 5070--5077 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5070--5077 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [829] [830] [831] Underfull \hbox (badness 1546) in paragraph at lines 5212--5220 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [832] Underfull \hbox (badness 1648) in paragraph at lines 5289--5293 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [833] [834] [835] [836] [837] [838] [839] Underfull \hbox (badness 10000) in paragraph at lines 5741--5744 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [840] [841] [842] [843] [844] [845] Underfull \hbox (badness 1189) in paragraph at lines 6138--6140 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [846] [847] Underfull \hbox (badness 10000) in paragraph at lines 6236--6238 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [848] [849] [850] [851] Underfull \hbox (badness 3780) in paragraph at lines 6527--6533 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [852] [853] [854] Underfull \hbox (badness 2680) in paragraph at lines 6728--6730 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [855] [856] [857]) (./graphics-pkg.tex [858] Chapter 5. [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [870] [871] [872] [873] Underfull \vbox (badness 3803) has occurred while \output is active [874] [875] [876] [877] [878] [879] Underfull \hbox (badness 4634) in paragraph at lines 1255--1258 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 1009) in paragraph at lines 2289--2296 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] Underfull \vbox (badness 10000) has occurred while \output is active [919] [920] [921] [922] Underfull \hbox (badness 1867) in paragraph at lines 3931--3935 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [923] [924] [925] [926] [927] [928] [929] [930] Underfull \hbox (badness 1924) in paragraph at lines 4378--4383 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain Underfull \hbox (badness 2529) in paragraph at lines 4409--4412 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [931] [932] [933] [934] [935] Underfull \hbox (badness 10000) in paragraph at lines 4759--4765 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4759--4765 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [936] [937] Underfull \hbox (badness 10000) in paragraph at lines 4890--4893 [938 >/library/graphics/help/figures/mai.pdf>] Underfull \hbox (badness 10000) in paragraph at lines 4951--4953 Underfull \vbox (badness 10000) has occurred while \output is active [939] [940 >/library/graphics/help/figures/oma.pdf>] [941] Underfull \hbox (badness 10000) in paragraph at lines 5141--5143 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [942] Underfull \vbox (badness 3803) has occurred while \output is active [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6612--6613 [][] [965] [966 >/library/graphics/help/figures/pch .pdf>] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] Underfull \hbox (badness 1048) in paragraph at lines 7321--7326 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [977] [978] Underfull \hbox (badness 1102) in paragraph at lines 7437--7440 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] Underfull \hbox (badness 1043) in paragraph at lines 8272--8276 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly en-larged) usual plot-ting sym-bol (\T1/zi4/m/n/10 pch\T1/ptm/m/n/10 ) is drawn . For [993] [994] [995] [996] [997] [998] [999] Underfull \hbox (badness 10000) in paragraph at lines 8675--8677 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8677--8679 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [1000]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.8757 \HeaderA{units}{Graphical Units}{units} [1001] [1002] [1003] [1004]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [1005] [1006] [1007] [1008] [1009] [1010] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 4279) in paragraph at lines 970--979 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] Underfull \vbox (badness 3803) has occurred while \output is active [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] Underfull \hbox (badness 1067) in paragraph at lines 4340--4343 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1078] [1079] [1080] [1081] Underfull \hbox (badness 7256) in paragraph at lines 4585--4587 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] Underfull \hbox (badness 10000) in paragraph at lines 5862--5868 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] Underfull \hbox (badness 7649) in paragraph at lines 6341--6344 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1112] [1113] [1114] [1115]) (./methods-pkg.tex [1116] Chapter 7. [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \vbox (badness 3803) has occurred while \output is active [1125] Underfull \vbox (badness 10000) has occurred while \output is active [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] Underfull \hbox (badness 2237) in paragraph at lines 1386--1388 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] Underfull \hbox (badness 1077) in paragraph at lines 1933--1940 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests [1144] Underfull \hbox (badness 10000) in paragraph at lines 1982--1987 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1982--1987 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1145] [1146] [1147] Underfull \hbox (badness 1242) in paragraph at lines 2215--2220 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1148] [1149] [1150] [1151] [1152] Underfull \hbox (badness 10000) in paragraph at lines 2575--2578 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1153] [1154] Underfull \hbox (badness 1132) in paragraph at lines 2715--2719 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1155] Underfull \hbox (badness 1033) in paragraph at lines 2747--2752 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 1102) in paragraph at lines 3304--3306 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1163] [1164] [1165] [1166] [1167] [1168] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1169] Overfull \hbox (123.02902pt too wide) in paragraph at lines 3765--3766 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longitude = "numeric", altitude = "numeric")) Underfull \hbox (badness 10000) in paragraph at lines 3765--3766 [1170] Overfull \hbox (16.41006pt too wide) in paragraph at lines 3849--3850 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = "numeric") [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 1436) in paragraph at lines 4446--4449 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4475--4481 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4475--4481 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1181] Underfull \hbox (badness 1092) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] Underfull \vbox (badness 10000) has occurred while \output is active [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 5358--5359 []\T1/zi4/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1193] Underfull \hbox (badness 4036) in paragraph at lines 5440--5443 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1194] Underfull \hbox (badness 3803) in paragraph at lines 5515--5517 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1195] [1196] [1197] [1198] Underfull \hbox (badness 1087) in paragraph at lines 5747--5752 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] Underfull \hbox (badness 1675) in paragraph at lines 6454--6460 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1207] [1208] [1209] [1210] Underfull \vbox (badness 10000) has occurred while \output is active [1211] [1212] [1213] [1214]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6976 \aliasA{S4}{S3Part}{S4} [1215] [1216] [1217]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7232 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7234 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7235 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7237 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7238 \aliasA{Summary}{S4groupGeneric}{Summary} [1218] Underfull \hbox (badness 2050) in paragraph at lines 7299--7303 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1219] [1220] [1221] Underfull \hbox (badness 1286) in paragraph at lines 7487--7489 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] Underfull \vbox (badness 10000) has occurred while \output is active [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] Underfull \hbox (badness 1852) in paragraph at lines 10567--10571 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1264] [1265] [1266] [1267]) (./parallel-pkg.tex [1268] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 3386) in paragraph at lines 1268--1271 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1289] [1290] [1291]) (./splines-pkg.tex [1292] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307]) (./stats-pkg.tex [1308] Chapter 10. [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1412) in paragraph at lines 848--850 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] Underfull \hbox (badness 2503) in paragraph at lines 1329--1332 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1330] [1331] [1332] Underfull \hbox (badness 10000) in paragraph at lines 1508--1512 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] Underfull \hbox (badness 3965) in paragraph at lines 2168--2170 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1344] [1345] [1346] [1347] [1348] Underfull \hbox (badness 3965) in paragraph at lines 2510--2512 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] Underfull \hbox (badness 2726) in paragraph at lines 3224--3240 \T1/ptm/m/n/10 We have slightly tweaked the orig-i-nal ``TOMS 708'' al-go-rithm , and en-hanced for [1360] [1361] Underfull \hbox (badness 2503) in paragraph at lines 3354--3357 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] Underfull \hbox (badness 3989) in paragraph at lines 4582--4589 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] Underfull \hbox (badness 2556) in paragraph at lines 5193--5196 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5210--5212 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1392] [1393] [1394] [1395] Underfull \hbox (badness 1142) in paragraph at lines 5451--5463 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1396] [1397] [1398] Underfull \hbox (badness 2503) in paragraph at lines 5599--5603 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] Underfull \hbox (badness 8132) in paragraph at lines 6102--6107 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1407] [1408] [1409] [1410] [1411] Underfull \hbox (badness 7081) in paragraph at lines 6380--6383 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6384--6386 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1412] [1413] [1414] [1415] [1416] Underfull \vbox (badness 3803) has occurred while \output is active [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] Underfull \hbox (badness 10000) in paragraph at lines 7225--7228 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] Underfull \hbox (badness 2626) in paragraph at lines 8860--8863 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1452] Underfull \hbox (badness 2503) in paragraph at lines 8960--8964 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1453] [1454] [1455] [1456] [1457] [1458] Overfull \hbox (3.53955pt too wide) in paragraph at lines 9309--9311 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 4518) in paragraph at lines 10235--10240 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1473] [1474] [1475] [1476] [1477] Underfull \hbox (badness 2142) in paragraph at lines 10577--10580 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10596--10599 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1478] Underfull \hbox (badness 1708) in paragraph at lines 10658--10662 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 1694) in paragraph at lines 11054--11057 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1485] Underfull \hbox (badness 1867) in paragraph at lines 11073--11082 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1486] [1487] [1488] [1489] [1490] Underfull \hbox (badness 10000) in paragraph at lines 11380--11383 []\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds [][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq uiv-a-lent of [1491] [1492]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.hat}) has been already used, duplicate ignored \relax l.11534 \aliasA{hat}{influence.measures}{hat} [1493] [1494] Underfull \hbox (badness 1484) in paragraph at lines 11665--11667 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 4441) in paragraph at lines 12248--12250 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12255--12257 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1505] [1506] [1507] [1508] [1509] [1510] Underfull \hbox (badness 2894) in paragraph at lines 12589--12593 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] Underfull \hbox (badness 4518) in paragraph at lines 13284--13289 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] Underfull \hbox (badness 4518) in paragraph at lines 13931--13936 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1532] [1533] [1534] Underfull \hbox (badness 10000) in paragraph at lines 14069--14073 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 14076--14078 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] Underfull \hbox (badness 2503) in paragraph at lines 15138--15142 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] Underfull \hbox (badness 1584) in paragraph at lines 15650--15656 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] Underfull \hbox (badness 2359) in paragraph at lines 17287--17289 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1587] Underfull \vbox (badness 3803) has occurred while \output is active [1588] Underfull \vbox (badness 10000) has occurred while \output is active [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 1377) in paragraph at lines 18198--18203 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18203--18206 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on [1602] Underfull \hbox (badness 1454) in paragraph at lines 18216--18220 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18224--18228 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] Underfull \hbox (badness 1337) in paragraph at lines 18840--18843 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 3049) in paragraph at lines 19326--19330 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1622] [1623] [1624] [1625] Underfull \hbox (badness 5563) in paragraph at lines 19576--19578 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19579--19582 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 2503) in paragraph at lines 19954--19957 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1632] Underfull \hbox (badness 10000) in paragraph at lines 19981--19983 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 10000) in paragraph at lines 21029--21035 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] Underfull \hbox (badness 1337) in paragraph at lines 22367--22373 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Overfull \hbox (27.74408pt too wide) in paragraph at lines 22912--22912 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1681] [1682] [1683] [1684] [1685] Underfull \hbox (badness 10000) in paragraph at lines 23162--23165 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Underfull \hbox (badness 10000) in paragraph at lines 23747--23750 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1695] Underfull \hbox (badness 3690) in paragraph at lines 23798--23802 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] Underfull \hbox (badness 3439) in paragraph at lines 24268--24274 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1705] [1706] [1707] Underfull \hbox (badness 1867) in paragraph at lines 24465--24467 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallback = use.fallback) \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 PP <- sum(!is.na([][]coef[][][](object))) \T1/ptm/m/n/10 -- wher e in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was Underfull \hbox (badness 1132) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 length(coef(object)) \T1/ptm/m/n/10 which is too large in case o f un-de-ter-mined co-ef-fi-cients, e.g., for [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 10000) in paragraph at lines 24950--24955 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 3514) in paragraph at lines 25992--25997 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1733] Underfull \hbox (badness 3514) in paragraph at lines 26054--26059 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1734] Underfull \hbox (badness 3514) in paragraph at lines 26111--26116 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1735] Underfull \hbox (badness 3514) in paragraph at lines 26172--26178 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1736] [1737] [1738] [1739] Underfull \hbox (badness 3514) in paragraph at lines 26385--26390 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1740] Underfull \hbox (badness 3514) in paragraph at lines 26441--26446 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1741] Underfull \hbox (badness 3514) in paragraph at lines 26499--26504 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1742] Underfull \hbox (badness 3514) in paragraph at lines 26554--26559 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Underfull \hbox (badness 6691) in paragraph at lines 26623--26628 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 5431) in paragraph at lines 27753--27755 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1763] [1764] [1765] Underfull \hbox (badness 5431) in paragraph at lines 27963--27966 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1766] [1767] [1768] [1769] [1770] [1771] Underfull \hbox (badness 1337) in paragraph at lines 28277--28281 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1772] [1773] Underfull \hbox (badness 10000) in paragraph at lines 28394--28397 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1774] [1775] Underfull \hbox (badness 1616) in paragraph at lines 28577--28580 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] Underfull \hbox (badness 10000) in paragraph at lines 29703--29707 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1795] [1796] [1797] Underfull \vbox (badness 10000) has occurred while \output is active [1798] [1799] [1800] Underfull \hbox (badness 1337) in paragraph at lines 30067--30071 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 30551--30555 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] Underfull \hbox (badness 2142) in paragraph at lines 30628--30633 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 x \T1/ptm/m/n/10 (and \T1/zi4/m/n/10 y \T1 /ptm/m/n/10 if ap-pli-ca-ble) are valid, the func-tion now al-ways re-turns, al so in the [1810] Underfull \hbox (badness 5161) in paragraph at lines 30650--30652 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 10000) in paragraph at lines 31032--31037 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1817] [1818]) (./stats4-pkg.tex Chapter 11. [1819] [1820] [1821] [1822] [1823] [1824]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1825] [1826] [1827] [1828]) (./tcltk-pkg.tex Chapter 12. [1829] [1830] [1831] [1832] [1833] [1834] [1835] Underfull \vbox (badness 10000) has occurred while \output is active [1836] Underfull \vbox (badness 10000) has occurred while \output is active [1837] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] [1848] Underfull \hbox (badness 3019) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the ma-cOS GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 ( whose [1849]) (./tools-pkg.tex [1850] Chapter 13. [1851] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1852] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1853] [1854] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1855] [1856] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 1635) in paragraph at lines 1053--1055 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1868] Underfull \hbox (badness 4441) in paragraph at lines 1131--1141 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1869] Underfull \hbox (badness 1014) in paragraph at lines 1153--1155 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1159--1161 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1196--1199 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1196--1199 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1870] [1871] [1872] Underfull \hbox (badness 10000) in paragraph at lines 1365--1367 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1873] [1874] [1875] Underfull \hbox (badness 2293) in paragraph at lines 1539--1541 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1876] [1877] Underfull \hbox (badness 7981) in paragraph at lines 1677--1682 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1684--1686 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1878] [1879] [1880] [1881]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1881 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1882] [1883] [1884] [1885] [1886] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2183--2183 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1887] [1888] [1889] Underfull \hbox (badness 7981) in paragraph at lines 2352--2358 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1890] [1891] [1892] [1893] [1894] [1895] [1896] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2817. [1897] [1898] [1899] [1900] Underfull \hbox (badness 1424) in paragraph at lines 3099--3101 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] Underfull \hbox (badness 10000) in paragraph at lines 3799--3801 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1913] [1914] Underfull \hbox (badness 10000) in paragraph at lines 3938--3941 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1915] [1916] Underfull \hbox (badness 1137) in paragraph at lines 4036--4038 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1917] [1918] [1919] Underfull \hbox (badness 1838) in paragraph at lines 4245--4251 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4245--4251 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1920] Underfull \hbox (badness 5726) in paragraph at lines 4325--4330 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 4325--4330 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1921] [1922] [1923] Underfull \hbox (badness 2197) in paragraph at lines 4474--4484 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 2229) in paragraph at lines 4474--4484 \T1/ptm/m/n/10 fields will al-ways be in-cluded, plus the file name in field \T 1/zi4/m/sl/10 "File" \T1/ptm/m/n/10 if [1924] Underfull \hbox (badness 1571) in paragraph at lines 4537--4541 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1925] [1926] [1927]) (./utils-pkg.tex [1928] Chapter 14. [1929] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1930] [1931] [1932] [1933] [1934] [1935] [1936] Underfull \hbox (badness 10000) in paragraph at lines 546--552 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 546--552 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1937] [1938] Underfull \hbox (badness 5847) in paragraph at lines 660--666 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 660--666 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1939] Underfull \hbox (badness 3861) in paragraph at lines 728--733 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1940] [1941] [1942] Underfull \hbox (badness 1430) in paragraph at lines 893--900 \T1/ptm/m/n/10 in-di-cat-ing that the bib-tex code should be given in ad-di-tio n to the for- Underfull \hbox (badness 1931) in paragraph at lines 893--900 \T1/ptm/m/n/10 mat-ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not mo re than $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 1038) in paragraph at lines 893--900 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x", 1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 893--900 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1943] [1944] [1945] [1946] [1947] [1948] [1949] Underfull \hbox (badness 1371) in paragraph at lines 1375--1377 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 2057) in paragraph at lines 1863--1865 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1958] Underfull \hbox (badness 10000) in paragraph at lines 1958--1960 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1959] [1960] Underfull \hbox (badness 5189) in paragraph at lines 2060--2062 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1961] Underfull \vbox (badness 3803) has occurred while \output is active [1962] [1963] [1964] Underfull \hbox (badness 1661) in paragraph at lines 2278--2285 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1748) in paragraph at lines 2294--2297 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 10000) in paragraph at lines 2703--2707 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing Overfull \hbox (59.4187pt too wide) in paragraph at lines 2708--2711 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](..., header = TRUE, sep = ";", as.is=FALSE)\T1/ptm/m/n/10 , [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] Underfull \hbox (badness 1430) in paragraph at lines 3385--3393 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3434--3440 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] [2011] Underfull \hbox (badness 1371) in paragraph at lines 5271--5273 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [2012] Underfull \hbox (badness 1502) in paragraph at lines 5360--5365 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5360--5365 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2013] [2014] [2015] Underfull \hbox (badness 10000) in paragraph at lines 5533--5542 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2016] Underfull \hbox (badness 2150) in paragraph at lines 5596--5599 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2017] [2018] Underfull \hbox (badness 3118) in paragraph at lines 5733--5735 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5766--5770 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [2019] [2020] Underfull \hbox (badness 1325) in paragraph at lines 5874--5878 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [2021] Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [2022] Underfull \hbox (badness 3219) in paragraph at lines 6030--6037 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [2023] Underfull \hbox (badness 10000) in paragraph at lines 6110--6115 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] [2045] [2046] [2047] Underfull \hbox (badness 10000) in paragraph at lines 7527--7529 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7532--7537 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 1789) in paragraph at lines 8087--8089 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] Underfull \hbox (badness 1097) in paragraph at lines 8916--8919 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2069] Underfull \hbox (badness 3000) in paragraph at lines 9052--9057 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 2134) in paragraph at lines 9635--9640 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [2079] [2080] [2081] [2082] [2083] [2084] [2085] Underfull \hbox (badness 5077) in paragraph at lines 10060--10064 []\T1/zi4/m/sl/10 as.roman \T1/ptm/m/n/10 cre-ates ob-jects of class \T1/zi4/m/ sl/10 "roman" \T1/ptm/m/n/10 which are in-ter-nally rep-re-sented as in-te- Underfull \hbox (badness 2269) in paragraph at lines 10060--10064 \T1/ptm/m/n/10 gers, and have suit-able meth-ods for print-ing, for-mat-ting, s ub-set-ting, co-er-cion, etc, see Underfull \hbox (badness 2469) in paragraph at lines 10072--10076 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 10072--10076 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2086] [2087] [2088] [2089] [2090] Overfull \hbox (18.77168pt too wide) in paragraph at lines 10366--10366 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2091] Underfull \hbox (badness 10000) in paragraph at lines 10429--10431 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [2092] [2093] [2094] Underfull \hbox (badness 2150) in paragraph at lines 10605--10607 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2095] [2096] [2097] [2098] Underfull \hbox (badness 10000) in paragraph at lines 10824--10828 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 10855--10861 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2099] [2100] Underfull \hbox (badness 2096) in paragraph at lines 10973--10976 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10977--10980 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [2101] Underfull \hbox (badness 1009) in paragraph at lines 11049--11060 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2102] [2103] [2104] [2105] [2106] Underfull \hbox (badness 3780) in paragraph at lines 11355--11359 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 11374--11377 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 2818) in paragraph at lines 11746--11751 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 11755--11758 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2113] [2114] [2115] [2116] [2117] Underfull \hbox (badness 10000) in paragraph at lines 12018--12020 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2118] [2119] Underfull \hbox (badness 1057) in paragraph at lines 12175--12182 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, [2120] [2121] [2122] [2123] Underfull \hbox (badness 6510) in paragraph at lines 12434--12438 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 12441--12444 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 12441--12444 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Underfull \hbox (badness 10000) in paragraph at lines 12983--12985 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 12986--12988 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2132] Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 1297) in paragraph at lines 13016--13021 \T1/zi4/m/sl/10 available.packages(contriburl = contriburl, method = method) \T 1/ptm/m/n/10 and hence by Underfull \hbox (badness 10000) in paragraph at lines 13045--13048 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2133] [2134] [2135] [2136] Overfull \hbox (23.85939pt too wide) in paragraph at lines 13287--13290 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2137] [2138] Underfull \hbox (badness 1454) in paragraph at lines 13364--13368 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2139] Underfull \hbox (badness 10000) in paragraph at lines 13434--13436 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2140] [2141] [2142]) (./refman.ind [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190] [2191] Overfull \hbox (33.3567pt too wide) in paragraph at lines 8522--8524 []\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] Overfull \hbox (5.8567pt too wide) in paragraph at lines 11506--11508 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 11508--11510 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 11510--11512 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213]) (./refman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do es not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/ texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb> Output written on refman.pdf (2244 pages, 5996646 bytes). Transcript written on refman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 1880--1892 @texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@ textrm , @texttt org.r-project.x86_ [23] Chapter 5 [24] Chapter 6 [25] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2026--2026 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [26] [27] Underfull \hbox (badness 6842) in paragraph at lines 2218--2229 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [28] [29] [30] [31] [32] [33] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2691--2691 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] [34] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2711--2711 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2712--2712 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [35] [36] [37] Chapter 8 [38] Chapter 9 [39] [40] [41] [42] Appendix A [43] [44] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3344--3344 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [45] [46] [47] [48] [49] [50] [51] Overfull \hbox (26.43913pt too wide) in paragraph at lines 3953--3953 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM E@texttt /lib/libRblas.so[] [52] [53] Appendix B [54] [55] [56] [57] [58] [59] Appendix C [60] [61] [62] [63] [64] [65] [66] Overfull \hbox (78.17732pt too wide) in paragraph at lines 4957--4957 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig \[] [67] Overfull \hbox (106.92076pt too wide) in paragraph at lines 4995--4995 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [68] [69] Underfull \hbox (badness 10000) in paragraph at lines 5131--5136 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (20.69044pt too wide) in paragraph at lines 5146--5146 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_144.jdk/Content s/Home[] [70] [71] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5324--5324 []@texttt R_LD_LIBRARY_PATH="/opt/developerstudio12.5/lib:/usr/local/lib:/opt/ csw/lib"[] [72] Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @texttt LDFLAGS=-L/usr/local/lib/amd64[] @textrm or @texttt LDFLAGS=-L/usr/loca l/lib/sparcv9[] @textrm as Overfull \hbox (26.43913pt too wide) in paragraph at lines 5426--5426 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [73] Underfull \hbox (badness 10000) in paragraph at lines 5478--5482 []@textrm Note that paths such as @texttt /opt/csw/lib[]@textrm , @texttt /usr/ local/lib/amd64[] @textrm and [74] [75] [76] Appendix D [77] [78] [79] (Function and variable index) [80] No file R-admin.vrs. (Concept index) [81] No file R-admin.cps. (Environment variable index) [82] No file R-admin.ens. [83] ) (see the transcript file for additional information) Output written on R-admin.pdf (86 pages, 483345 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-admin.toc [-1] [-2]) [-3] (/<>/doc/manual/R-admin.toc) (/<>/doc/manual/R-admin.toc) Chapter 1 (/<>/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 1880--1892 @texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@ textrm , @texttt org.r-project.x86_ [23] Chapter 5 [24] Chapter 6 [25] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2026--2026 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [26] [27] Underfull \hbox (badness 6842) in paragraph at lines 2218--2229 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [28] [29] [30] [31] [32] [33] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2691--2691 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] [34] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2711--2711 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2712--2712 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [35] [36] [37] Chapter 8 [38] Chapter 9 [39] [40] [41] [42] Appendix A [43] [44] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3344--3344 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [45] [46] [47] [48] [49] [50] [51] Overfull \hbox (26.43913pt too wide) in paragraph at lines 3953--3953 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM E@texttt /lib/libRblas.so[] [52] Appendix B [53] [54] [55] [56] [57] [58] Appendix C [59] [60] [61] [62] [63] [64] [65] Overfull \hbox (78.17732pt too wide) in paragraph at lines 4957--4957 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig \[] [66] Overfull \hbox (106.92076pt too wide) in paragraph at lines 4995--4995 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 5131--5136 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (20.69044pt too wide) in paragraph at lines 5146--5146 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_144.jdk/Content s/Home[] [69] [70] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5324--5324 []@texttt R_LD_LIBRARY_PATH="/opt/developerstudio12.5/lib:/usr/local/lib:/opt/ csw/lib"[] [71] Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @texttt LDFLAGS=-L/usr/local/lib/amd64[] @textrm or @texttt LDFLAGS=-L/usr/loca l/lib/sparcv9[] @textrm as Overfull \hbox (26.43913pt too wide) in paragraph at lines 5426--5426 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [72] Underfull \hbox (badness 10000) in paragraph at lines 5478--5482 []@textrm Note that paths such as @texttt /opt/csw/lib[]@textrm , @texttt /usr/ local/lib/amd64[] @textrm and [73] [74] [75] Appendix D [76] [77] [78] (Function and variable index) [79] (Concept index) [80] (Environment variable index) [81] [82] ) (see the transcript file for additional information)pdfTeX warning (dest): name {83} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (87 pages, 528658 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-admin.toc [-1] [-2]) [-3] (/<>/doc/manual/R-admin.toc) (/<>/doc/manual/R-admin.toc) Chapter 1 (/<>/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 1880--1892 @texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@ textrm , @texttt org.r-project.x86_ [23] Chapter 5 [24] Chapter 6 [25] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2026--2026 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [26] [27] Underfull \hbox (badness 6842) in paragraph at lines 2218--2229 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [28] [29] [30] [31] [32] [33] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2691--2691 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] [34] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2711--2711 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2712--2712 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [35] [36] [37] Chapter 8 [38] Chapter 9 [39] [40] [41] [42] Appendix A [43] [44] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3344--3344 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [45] [46] [47] [48] [49] [50] [51] Overfull \hbox (26.43913pt too wide) in paragraph at lines 3953--3953 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM E@texttt /lib/libRblas.so[] [52] Appendix B [53] [54] [55] [56] [57] [58] Appendix C [59] [60] [61] [62] [63] [64] [65] Overfull \hbox (78.17732pt too wide) in paragraph at lines 4957--4957 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig \[] [66] Overfull \hbox (106.92076pt too wide) in paragraph at lines 4995--4995 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 5131--5136 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (20.69044pt too wide) in paragraph at lines 5146--5146 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_144.jdk/Content s/Home[] [69] [70] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5324--5324 []@texttt R_LD_LIBRARY_PATH="/opt/developerstudio12.5/lib:/usr/local/lib:/opt/ csw/lib"[] [71] Underfull \hbox (badness 10000) in paragraph at lines 5411--5417 @texttt LDFLAGS=-L/usr/local/lib/amd64[] @textrm or @texttt LDFLAGS=-L/usr/loca l/lib/sparcv9[] @textrm as Overfull \hbox (26.43913pt too wide) in paragraph at lines 5426--5426 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [72] Underfull \hbox (badness 10000) in paragraph at lines 5478--5482 []@textrm Note that paths such as @texttt /opt/csw/lib[]@textrm , @texttt /usr/ local/lib/amd64[] @textrm and [73] [74] [75] Appendix D [76] [77] [78] (Function and variable index) [79] (Concept index) [80] (Environment variable index) [81] [82] ) (see the transcript file for additional information) Output written on R-admin.pdf (87 pages, 528604 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt org / Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf ncdf4 Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf rJava Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf RJDBC Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RMySQL Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt org / Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RNetCDF Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RODBC Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf ROracle Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt org / Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 101--101 [][]@textbf RSQLite Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 103--103 [][]@textbf WriteXLS Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt org / Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf XLConnect Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt org / Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104 @texttt package=XLConnect[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XML Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Chapter 4 [17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6 [25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32] Appendix A [33] (Function and variable index) [34] No file R-data.vrs. (Concept index) [35] No file R-data.cps. [36] ) (see the transcript file for additional information) Output written on R-data.pdf (39 pages, 272952 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-data.toc [-1]) [-2] (/<>/doc/manual/R-data.toc) (/<>/doc/manual/R-data.toc) (Acknowledgements) (/<>/doc/manual/R-data.aux) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt org / Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf ncdf4 Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf rJava Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf RJDBC Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RMySQL Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt org / Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RNetCDF Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RODBC Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf ROracle Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt org / Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 101--101 [][]@textbf RSQLite Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 103--103 [][]@textbf WriteXLS Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt org / Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf XLConnect Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt org / Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104 @texttt package=XLConnect[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XML Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] Writing index file R-data.cp [4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Chapter 4 [17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6 [25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32] Appendix A [33] (Function and variable index) [34] [35] (Concept index) [36] [37] Overfull \vbox (7.16699pt too high) has occurred while \output is active [38] ) (see the transcript file for additional information) Output written on R-data.pdf (42 pages, 312849 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-data.toc [-1]) [-2] (/<>/doc/manual/R-data.toc) (/<>/doc/manual/R-data.toc) (Acknowledgements) (/<>/doc/manual/R-data.aux) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt org / Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf ncdf4 Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf rJava Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf RJDBC Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RMySQL Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt org / Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RNetCDF Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RODBC Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf ROracle Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt org / Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 101--101 [][]@textbf RSQLite Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 103--103 [][]@textbf WriteXLS Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt org / Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf XLConnect Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt org / Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104 @texttt package=XLConnect[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XML Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] Writing index file R-data.cp [4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Chapter 4 [17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6 [25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32] Appendix A [33] (Function and variable index) [34] [35] (Concept index) [36] [37] Overfull \vbox (7.16699pt too high) has occurred while \output is active [38] ) (see the transcript file for additional information) Output written on R-data.pdf (42 pages, 312852 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] Overfull \vbox (0.24982pt too high) has occurred while \output is active [20] [21] [22] [23] [24] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1898--1898 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [25] [26] [27] [28] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2231--2231 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2233--2233 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [29] [30] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2375--2375 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [31] Underfull \hbox (badness 10000) in paragraph at lines 2482--2484 [][][]@smallrm The changes are linked from [][]@smalltt https: / / isocpp . org / std / standing-documents / [32] [33] Overfull \hbox (60.93126pt too wide) in paragraph at lines 2605--2605 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [34] [35] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2730--2732 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Overfull \hbox (53.86903pt too wide) in paragraph at lines 4536--4536 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 4538--4538 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 4539--4539 [] @texttt if(jvn < 1.8) stop("Java 8 is needed for this package but not avai lable")[] [59] [60] [61] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4786--4786 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [62] [63] [64] Overfull \hbox (30.87428pt too wide) in paragraph at lines 4996--4996 []@texttt abs acos atan calloc ceil div exp fabs floor fmod free log malloc me mcpy[] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4997--4997 []@texttt memset pow printf qsort round sin sprintf sqrt strcmp strcpy strerro r[] [65] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5091--5091 []@texttt erf expm1 fmin fmax lgamma lround loglp round snprintf strcasecmp tr unc[] [66] [67] [68] Overfull \hbox (13.62822pt too wide) in paragraph at lines 5325--5325 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [69] [70] [71] Chapter 2 [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6585--6592 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [86] [87] [88] [89] Underfull \hbox (badness 10000) in paragraph at lines 6904--6908 []@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file [90] [91] Chapter 3 [92] [93] [94] [95] [96] [97] [98] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7505--7505 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [99] [100] [101] Chapter 4 [102] [103] [104] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7882--7882 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [105] Overfull \hbox (25.25755pt too wide) in paragraph at lines 7923--7923 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [106] Overfull \hbox (20.53261pt too wide) in paragraph at lines 8027--8027 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] [107] Overfull \hbox (38.96663pt too wide) in paragraph at lines 8057--8066 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [108] [109] [110] Overfull \hbox (44.18301pt too wide) in paragraph at lines 8335--8336 [][][]@smallrm see [][]@smalltt http: / / llvm . org / devmtg / 2014-04 / PDFs / LightningTalks / EuroLLVM%202014%20--%20container%20overflow . [111] [112] Overfull \hbox (78.17732pt too wide) in paragraph at lines 8467--8467 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 8495--8497 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8508--8508 []@texttt null,object-size,pointer-overflow,return,returns-nonnull-attribute,s hift,[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8509--8509 []@texttt signed-integer-overflow,unreachable,unsigned-integer-overflow,vla-bo und,vptr[] [113] [114] Overfull \hbox (72.42863pt too wide) in paragraph at lines 8626--8626 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [115] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8675--8675 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8678--8678 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [116] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8757--8757 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [117] [118] Chapter 5 [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] Overfull \hbox (30.87428pt too wide) in paragraph at lines 9722--9722 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 9771--9771 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [130] [131] [132] [133] [134] [135] [136] [137] Overfull \hbox (37.93651pt too wide) in paragraph at lines 10329--10329 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [138] [139] [140] [141] [142] [143] [144] [145] [146] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11101--11101 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [147] Underfull \hbox (badness 10000) in paragraph at lines 11162--11164 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [148] [149] [150] [151] [152] [153] [154] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11671--11671 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [155] [156] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11794--11794 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11799--11799 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11854--11854 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [157] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11866--11866 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [158] Overfull \hbox (26.43913pt too wide) in paragraph at lines 11965--11965 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [159] [160] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12101--12101 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [161] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12183--12183 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [162] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12270--12270 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] Chapter 6 [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 10000) in paragraph at lines 13429--13433 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [176] [177] Warning: unbalanced parentheses in @def... [178] [179] [180] [181] [182] Chapter 7 [183] [184] Chapter 8 [185] [186] [187] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14306--14306 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [188] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14338--14338 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14354--14354 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [189] [190] [191] [192] Underfull \hbox (badness 10000) in paragraph at lines 14597--14604 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [193] [194] [195] [196] [197] Underfull \hbox (badness 10000) in paragraph at lines 14980--14984 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [198] No file R-exts.vrs. (Concept index) [199] No file R-exts.cps. [200] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl Output written on R-exts.pdf (203 pages, 886458 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/<>/doc/manual/R-exts.toc) (/<>/doc/manual/R-exts.toc) (Acknowledgements) (/<>/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1898--1898 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [25] [26] [27] [28] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2231--2231 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2233--2233 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [29] [30] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2375--2375 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [31] Underfull \hbox (badness 10000) in paragraph at lines 2482--2484 [][][]@smallrm The changes are linked from [][]@smalltt https: / / isocpp . org / std / standing-documents / [32] [33] Overfull \hbox (60.93126pt too wide) in paragraph at lines 2605--2605 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [34] [35] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2730--2732 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Overfull \hbox (53.86903pt too wide) in paragraph at lines 4536--4536 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 4538--4538 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 4539--4539 [] @texttt if(jvn < 1.8) stop("Java 8 is needed for this package but not avai lable")[] [59] [60] [61] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4786--4786 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [62] [63] [64] Overfull \hbox (30.87428pt too wide) in paragraph at lines 4996--4996 []@texttt abs acos atan calloc ceil div exp fabs floor fmod free log malloc me mcpy[] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4997--4997 []@texttt memset pow printf qsort round sin sprintf sqrt strcmp strcpy strerro r[] [65] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5091--5091 []@texttt erf expm1 fmin fmax lgamma lround loglp round snprintf strcasecmp tr unc[] [66] [67] [68] Overfull \hbox (13.62822pt too wide) in paragraph at lines 5325--5325 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [69] [70] [71] Chapter 2 [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6585--6592 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [86] [87] [88] [89] Underfull \hbox (badness 10000) in paragraph at lines 6904--6908 []@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file [90] [91] Chapter 3 [92] [93] [94] [95] [96] [97] [98] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7505--7505 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [99] [100] [101] Chapter 4 [102] [103] [104] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7882--7882 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [105] Overfull \hbox (25.25755pt too wide) in paragraph at lines 7923--7923 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [106] Overfull \hbox (20.53261pt too wide) in paragraph at lines 8027--8027 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] [107] Overfull \hbox (38.96663pt too wide) in paragraph at lines 8057--8066 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [108] [109] [110] Overfull \hbox (44.18301pt too wide) in paragraph at lines 8335--8336 [][][]@smallrm see [][]@smalltt http: / / llvm . org / devmtg / 2014-04 / PDFs / LightningTalks / EuroLLVM%202014%20--%20container%20overflow . [111] [112] Overfull \hbox (78.17732pt too wide) in paragraph at lines 8467--8467 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 8495--8497 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8508--8508 []@texttt null,object-size,pointer-overflow,return,returns-nonnull-attribute,s hift,[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8509--8509 []@texttt signed-integer-overflow,unreachable,unsigned-integer-overflow,vla-bo und,vptr[] [113] [114] Overfull \hbox (72.42863pt too wide) in paragraph at lines 8626--8626 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [115] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8675--8675 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8678--8678 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [116] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8757--8757 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [117] [118] Chapter 5 [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] Overfull \hbox (30.87428pt too wide) in paragraph at lines 9722--9722 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 9771--9771 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [130] [131] [132] [133] [134] [135] [136] [137] Overfull \hbox (37.93651pt too wide) in paragraph at lines 10329--10329 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [138] [139] [140] [141] [142] [143] [144] [145] [146] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11101--11101 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [147] Underfull \hbox (badness 10000) in paragraph at lines 11162--11164 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [148] [149] [150] [151] [152] [153] [154] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11671--11671 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [155] [156] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11794--11794 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11799--11799 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11854--11854 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [157] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11866--11866 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [158] Overfull \hbox (26.43913pt too wide) in paragraph at lines 11965--11965 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [159] [160] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12101--12101 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [161] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12183--12183 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [162] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12270--12270 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] Chapter 6 [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 10000) in paragraph at lines 13429--13433 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [176] Warning: unbalanced parentheses in @def... [177] [178] [179] [180] [181] [182] Chapter 7 [183] [184] Chapter 8 [185] [186] [187] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14306--14306 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [188] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14338--14338 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14354--14354 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [189] [190] [191] [192] Underfull \hbox (badness 10000) in paragraph at lines 14597--14604 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [193] [194] [195] [196] [197] Underfull \hbox (badness 10000) in paragraph at lines 14980--14984 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [198] [199] [200] [201] (Concept index) [202] [203] [204] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb> Output written on R-exts.pdf (211 pages, 948792 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/<>/doc/manual/R-exts.toc) (/<>/doc/manual/R-exts.toc) (Acknowledgements) (/<>/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1898--1898 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [25] [26] [27] [28] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2231--2231 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2233--2233 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [29] [30] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2375--2375 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [31] Underfull \hbox (badness 10000) in paragraph at lines 2482--2484 [][][]@smallrm The changes are linked from [][]@smalltt https: / / isocpp . org / std / standing-documents / [32] [33] Overfull \hbox (60.93126pt too wide) in paragraph at lines 2605--2605 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [34] [35] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2730--2732 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Overfull \hbox (53.86903pt too wide) in paragraph at lines 4536--4536 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 4538--4538 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 4539--4539 [] @texttt if(jvn < 1.8) stop("Java 8 is needed for this package but not avai lable")[] [59] [60] [61] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4786--4786 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [62] [63] [64] Overfull \hbox (30.87428pt too wide) in paragraph at lines 4996--4996 []@texttt abs acos atan calloc ceil div exp fabs floor fmod free log malloc me mcpy[] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4997--4997 []@texttt memset pow printf qsort round sin sprintf sqrt strcmp strcpy strerro r[] [65] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5091--5091 []@texttt erf expm1 fmin fmax lgamma lround loglp round snprintf strcasecmp tr unc[] [66] [67] [68] Overfull \hbox (13.62822pt too wide) in paragraph at lines 5325--5325 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [69] [70] [71] Chapter 2 [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6585--6592 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [86] [87] [88] [89] Underfull \hbox (badness 10000) in paragraph at lines 6904--6908 []@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file [90] [91] Chapter 3 [92] [93] [94] [95] [96] [97] [98] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7505--7505 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [99] [100] [101] Chapter 4 [102] [103] [104] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7882--7882 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [105] Overfull \hbox (25.25755pt too wide) in paragraph at lines 7923--7923 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [106] Overfull \hbox (20.53261pt too wide) in paragraph at lines 8027--8027 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] [107] Overfull \hbox (38.96663pt too wide) in paragraph at lines 8057--8066 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [108] [109] [110] Overfull \hbox (44.18301pt too wide) in paragraph at lines 8335--8336 [][][]@smallrm see [][]@smalltt http: / / llvm . org / devmtg / 2014-04 / PDFs / LightningTalks / EuroLLVM%202014%20--%20container%20overflow . [111] [112] Overfull \hbox (78.17732pt too wide) in paragraph at lines 8467--8467 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 8495--8497 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8508--8508 []@texttt null,object-size,pointer-overflow,return,returns-nonnull-attribute,s hift,[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8509--8509 []@texttt signed-integer-overflow,unreachable,unsigned-integer-overflow,vla-bo und,vptr[] [113] [114] Overfull \hbox (72.42863pt too wide) in paragraph at lines 8626--8626 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [115] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8675--8675 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8678--8678 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [116] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8757--8757 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [117] [118] Chapter 5 [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] Overfull \hbox (30.87428pt too wide) in paragraph at lines 9722--9722 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 9771--9771 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [130] [131] [132] [133] [134] [135] [136] [137] Overfull \hbox (37.93651pt too wide) in paragraph at lines 10329--10329 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [138] [139] [140] [141] [142] [143] [144] [145] [146] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11101--11101 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [147] Underfull \hbox (badness 10000) in paragraph at lines 11162--11164 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [148] [149] [150] [151] [152] [153] [154] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11671--11671 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [155] [156] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11794--11794 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11799--11799 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11854--11854 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [157] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11866--11866 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [158] Overfull \hbox (26.43913pt too wide) in paragraph at lines 11965--11965 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [159] [160] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12101--12101 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [161] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12183--12183 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [162] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12270--12270 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] Chapter 6 [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 10000) in paragraph at lines 13429--13433 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [176] Warning: unbalanced parentheses in @def... [177] [178] [179] [180] [181] [182] Chapter 7 [183] [184] Chapter 8 [185] [186] [187] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14306--14306 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [188] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14338--14338 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14354--14354 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [189] [190] [191] [192] Underfull \hbox (badness 10000) in paragraph at lines 14597--14604 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [193] [194] [195] [196] [197] Underfull \hbox (badness 10000) in paragraph at lines 14980--14984 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [198] [199] [200] [201] (Concept index) [202] [203] [204] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb> Output written on R-exts.pdf (211 pages, 948776 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] Writing index file R-FAQ.fn [40] [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 3385--3393 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [43] Chapter 8 [44] Chapter 9 [45] [46] Chapter 10 [47] [48] [49] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 367713 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (/<>/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/<>/doc/manual/R-FAQ.toc) (/<>/doc/manual/R-FAQ.toc) Chapter 1 (/<>/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] Writing index file R-FAQ.fn [40] [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 3385--3393 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [43] Chapter 8 [44] Chapter 9 [45] [46] Chapter 10 [47] [48] [49] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (53 pages, 384320 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (/<>/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/<>/doc/manual/R-FAQ.toc) (/<>/doc/manual/R-FAQ.toc) Chapter 1 (/<>/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] Writing index file R-FAQ.fn [40] [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 3385--3393 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [43] Chapter 8 [44] Chapter 9 [45] [46] Chapter 10 [47] [48] [49] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (53 pages, 384324 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5741--5741 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6447--6452 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] No file R-intro.vrs. Appendix E [102] No file R-intro.cps. Appendix F [103] [104] ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb> Output written on R-intro.pdf (107 pages, 584170 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/<>/doc/manual/R-intro.toc) (/<>/doc/manual/R-intro.toc) (Preface) (/<>/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5741--5741 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6447--6452 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] [102] [103] Appendix E [104] [105] Appendix F [106] [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 633732 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/<>/doc/manual/R-intro.toc) (/<>/doc/manual/R-intro.toc) (Preface) (/<>/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5741--5741 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6447--6452 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] [102] [103] Appendix E [104] [105] Appendix F [106] [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 633790 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1443--1443 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1444--1444 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1445--1445 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1446--1446 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [18] [19] [20] [21] [22] [23] Chapter 2 [24] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1971--1971 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [25] [26] [27] [28] Chapter 3 [29] [30] Chapter 4 [31] [32] Chapter 5 [33] Chapter 6 [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Chapter 7 [47] Underfull \hbox (badness 10000) in paragraph at lines 3619--3628 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3619--3628 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [48] Chapter 8 [49] [50] [51] [52] [53] Underfull \hbox (badness 10000) in paragraph at lines 3993--4001 @texttt CRAN . R-project . org / package=codetools[]@textrm )[][] func-tions u sed for Underfull \hbox (badness 7869) in paragraph at lines 3993--4001 @textrm an-a-lyz-ing pack-age code. E.g., use @texttt _R_CHECK_CODETOOLS_PROFI LE_ Underfull \hbox (badness 10000) in paragraph at lines 3993--4001 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [54] [55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12 [61] [62] (Function and variable index) [63] [64] No file R-ints.vrs. (Concept index) [65] No file R-ints.cps. [66] ) (see the transcript file for additional information) Output written on R-ints.pdf (69 pages, 392209 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-ints.toc [-1] [-2]) [-3] (/<>/doc/manual/R-ints.toc) (/<>/doc/manual/R-ints.toc) Chapter 1 (/<>/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1443--1443 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1444--1444 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1445--1445 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1446--1446 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [18] [19] [20] [21] [22] [23] Chapter 2 [24] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1971--1971 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [25] [26] [27] [28] Chapter 3 [29] [30] Chapter 4 [31] [32] Chapter 5 [33] Chapter 6 [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Chapter 7 [47] Underfull \hbox (badness 10000) in paragraph at lines 3619--3628 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3619--3628 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [48] Chapter 8 [49] [50] [51] [52] [53] Underfull \hbox (badness 10000) in paragraph at lines 3993--4001 @texttt CRAN . R-project . org / package=codetools[]@textrm )[][] func-tions u sed for Underfull \hbox (badness 7869) in paragraph at lines 3993--4001 @textrm an-a-lyz-ing pack-age code. E.g., use @texttt _R_CHECK_CODETOOLS_PROFI LE_ Underfull \hbox (badness 10000) in paragraph at lines 3993--4001 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [54] [55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12 [61] [62] (Function and variable index) [63] [64] [65] (Concept index) [66] [67] ) (see the transcript file for additional information) Output written on R-ints.pdf (72 pages, 440502 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-ints.toc [-1] [-2]) [-3] (/<>/doc/manual/R-ints.toc) (/<>/doc/manual/R-ints.toc) Chapter 1 (/<>/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1443--1443 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1444--1444 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1445--1445 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1446--1446 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [18] [19] [20] [21] [22] [23] Chapter 2 [24] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1971--1971 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [25] [26] [27] [28] Chapter 3 [29] [30] Chapter 4 [31] [32] Chapter 5 [33] Chapter 6 [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Chapter 7 [47] Underfull \hbox (badness 10000) in paragraph at lines 3619--3628 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3619--3628 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [48] Chapter 8 [49] [50] [51] [52] [53] Underfull \hbox (badness 10000) in paragraph at lines 3993--4001 @texttt CRAN . R-project . org / package=codetools[]@textrm )[][] func-tions u sed for Underfull \hbox (badness 7869) in paragraph at lines 3993--4001 @textrm an-a-lyz-ing pack-age code. E.g., use @texttt _R_CHECK_CODETOOLS_PROFI LE_ Underfull \hbox (badness 10000) in paragraph at lines 3993--4001 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [54] [55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12 [61] [62] (Function and variable index) [63] [64] [65] (Concept index) [66] [67] ) (see the transcript file for additional information) Output written on R-ints.pdf (72 pages, 440497 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28] Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] No file R-lang.vrs. (Concept Index) [60] No file R-lang.cps. Appendix A [61] [62] ) (see the transcript file for additional information) Output written on R-lang.pdf (65 pages, 330543 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-lang.toc [-1] [-2]) [-3] (/<>/doc/manual/R-lang.toc) (/<>/doc/manual/R-lang.toc) Chapter 1 (/<>/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28] Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] [60] (Concept Index) [61] Overfull \vbox (81.99481pt too high) has occurred while \output is active Appendix A [62] [63] ) (see the transcript file for additional information) Output written on R-lang.pdf (68 pages, 379200 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2017-08-23.19]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-lang.toc [-1] [-2]) [-3] (/<>/doc/manual/R-lang.toc) (/<>/doc/manual/R-lang.toc) Chapter 1 (/<>/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28] Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] [60] (Concept Index) [61] Overfull \vbox (81.99481pt too high) has occurred while \output is active Appendix A [62] [63] ) (see the transcript file for additional information) Output written on R-lang.pdf (68 pages, 379208 bytes). Transcript written on R-lang.log. make[1]: Leaving directory '/<>/doc/manual' /usr/bin/make -k pdf make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/manual' PDF/LaTeX documentation: full reference index ... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2017-04-15> Babel <3.15> and hyphenation patterns for 3 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.112, 2017/01/04 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 366. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 366. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx No file fullrefman.aux. (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [1] [2] (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] Underfull \hbox (badness 2547) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 296--300 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] Underfull \hbox (badness 3977) in paragraph at lines 385--388 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [7] [8] Underfull \hbox (badness 2556) in paragraph at lines 533--539 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1144--1147 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1901--1901 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2086--2088 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Underfull \vbox (badness 10000) has occurred while \output is active [50] [51] [52] [53] [54] [55] [56] Underfull \hbox (badness 10000) in paragraph at lines 3607--3609 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [57] [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 3848--3848 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 4823--4825 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Overfull \hbox (5.27168pt too wide) in paragraph at lines 5954--5954 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [94] [95] [96] Underfull \hbox (badness 2096) in paragraph at lines 6137--6150 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [97] [98] [99] Overfull \hbox (56.34871pt too wide) in paragraph at lines 6341--6343 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 6483--6486 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [102] [103] Underfull \hbox (badness 1442) in paragraph at lines 6646--6652 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [104] Underfull \hbox (badness 3568) in paragraph at lines 6708--6715 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] [109] Underfull \hbox (badness 1077) in paragraph at lines 7019--7025 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7019--7025 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [110] [111] [112] [113] [114] Underfull \hbox (badness 2096) in paragraph at lines 7360--7364 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [115] [116] Underfull \hbox (badness 3000) in paragraph at lines 7453--7455 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7478--7481 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [117] [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 7733--7743 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [121] [122] Underfull \hbox (badness 4479) in paragraph at lines 7804--7814 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1394) in paragraph at lines 9477--9482 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [148] [149] [150] [151] [152] Underfull \hbox (badness 1194) in paragraph at lines 9822--9827 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9822--9827 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [153] [154] Underfull \hbox (badness 1735) in paragraph at lines 9960--9964 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [155] [156] [157] [158] [159] [160] [161] Underfull \hbox (badness 2150) in paragraph at lines 10375--10378 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 10389--10397 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2735) in paragraph at lines 10429--10436 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] Underfull \hbox (badness 4569) in paragraph at lines 11493--11497 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11493--11497 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [178] [179] [180] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 2698) in paragraph at lines 12070--12079 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 12070--12079 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [187] [188] [189] [190] [191] Underfull \vbox (badness 3803) has occurred while \output is active [192] [193] [194] [195] [196] Underfull \hbox (badness 6236) in paragraph at lines 12729--12732 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [197] [198] [199] [200] [201] [202] Underfull \hbox (badness 2253) in paragraph at lines 13141--13143 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [203] Underfull \hbox (badness 1565) in paragraph at lines 13212--13216 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [204] Underfull \hbox (badness 10000) in paragraph at lines 13256--13258 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [205] [206] Underfull \hbox (badness 1466) in paragraph at lines 13396--13399 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [207] [208] Underfull \hbox (badness 10000) in paragraph at lines 13514--13518 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13525--13528 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [209] [210] [211] [212] Underfull \hbox (badness 3965) in paragraph at lines 13788--13792 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] Underfull \hbox (badness 4429) in paragraph at lines 14550--14553 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [225] [226] Underfull \hbox (badness 10000) in paragraph at lines 14650--14652 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14656--14660 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 10000) in paragraph at lines 14695--14699 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14695--14699 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] Underfull \hbox (badness 2452) in paragraph at lines 15284--15288 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15284--15288 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [237] [238] [239] Underfull \hbox (badness 1092) in paragraph at lines 15457--15462 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [240] [241] [242] Underfull \hbox (badness 6741) in paragraph at lines 15705--15709 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [243] [244] [245] [246] [247] Underfull \hbox (badness 1867) in paragraph at lines 16011--16018 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [248] [249] [250] [251] Underfull \vbox (badness 10000) has occurred while \output is active [252] [253] [254] Underfull \hbox (badness 3679) in paragraph at lines 16421--16423 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 1478) in paragraph at lines 16976--16979 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [263] [264] [265] Underfull \hbox (badness 10000) in paragraph at lines 17229--17231 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [266] [267] [268] [269] [270] [271] [272] [273] [274] [275] Underfull \hbox (badness 1442) in paragraph at lines 17819--17821 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [276] Underfull \hbox (badness 2452) in paragraph at lines 17911--17927 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [277] [278] [279] [280] [281] [282] [283] Underfull \hbox (badness 1248) in paragraph at lines 18325--18328 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [284] [285] [286] [287] Underfull \hbox (badness 4739) in paragraph at lines 18583--18585 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 2469) in paragraph at lines 19600--19605 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and Underfull \hbox (badness 10000) in paragraph at lines 19614--19621 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / [305] Underfull \hbox (badness 10000) in paragraph at lines 19688--19692 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 19688--19692 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [306] [307] Underfull \hbox (badness 1509) in paragraph at lines 19823--19830 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1552) in paragraph at lines 19823--19830 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 19839--19844 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] [318] Underfull \hbox (badness 1264) in paragraph at lines 20572--20577 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [319] Underfull \hbox (badness 4441) in paragraph at lines 20601--20604 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] Underfull \hbox (badness 10000) in paragraph at lines 21327--21329 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] [346] Underfull \hbox (badness 1077) in paragraph at lines 22362--22368 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [347] [348] [349] Underfull \hbox (badness 1484) in paragraph at lines 22523--22531 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [350] [351] [352] [353] Underfull \hbox (badness 2790) in paragraph at lines 22794--22797 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 22794--22797 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [354] [355] [356] [357] Underfull \hbox (badness 1194) in paragraph at lines 23076--23079 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [358] [359] [360] [361] Underfull \hbox (badness 10000) in paragraph at lines 23282--23288 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 7379) in paragraph at lines 23282--23288 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] Underfull \hbox (badness 10000) in paragraph at lines 24242--24244 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [376] [377] [378] [379] Underfull \hbox (badness 1199) in paragraph at lines 24486--24492 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 24486--24492 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [380] [381] [382] [383] [384] [385] [386] [387] [388] Underfull \hbox (badness 1038) in paragraph at lines 25065--25073 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 25074--25077 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25093--25095 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [389] Underfull \hbox (badness 10000) in paragraph at lines 25202--25212 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 25213--25219 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [390] Underfull \hbox (badness 1968) in paragraph at lines 25249--25254 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 25259--25261 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [391] [392] [393] Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 25531--25534 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 25555--25557 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [394] Underfull \hbox (badness 10000) in paragraph at lines 25587--25592 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 25593--25604 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 25605--25608 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3713) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN ma-cOS build), Underfull \hbox (badness 7944) in paragraph at lines 25615--25627 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). Underfull \hbox (badness 2351) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/z i4/m/n/10 "mac.binary.mavericks"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.leo pard"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 25629--25636 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1874) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [395] [396] [397] [398] [399] Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [400] [401] [402] [403] [404] Underfull \hbox (badness 1735) in paragraph at lines 26294--26298 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] Underfull \hbox (badness 2726) in paragraph at lines 26865--26868 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] Underfull \hbox (badness 1052) in paragraph at lines 27692--27697 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [428] [429] [430] [431] [432] Underfull \vbox (badness 10000) has occurred while \output is active [433] [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 1533) in paragraph at lines 28501--28504 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [440] [441] [442] Underfull \hbox (badness 1163) in paragraph at lines 28663--28674 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] Underfull \hbox (badness 10000) in paragraph at lines 30186--30190 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 30186--30190 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 30208--30210 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [467] [468] [469] [470] [471] [472] [473] [474] [475] Underfull \hbox (badness 1655) in paragraph at lines 30756--30758 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] Underfull \hbox (badness 10000) in paragraph at lines 31431--31435 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [487] [488] [489] [490] Underfull \hbox (badness 2302) in paragraph at lines 31671--31678 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 3333) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [491] [492] Underfull \hbox (badness 2261) in paragraph at lines 31827--31832 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 31854--31860 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [493] Underfull \hbox (badness 10000) in paragraph at lines 31930--31935 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] Underfull \vbox (badness 3803) has occurred while \output is active [533] [534] [535] [536] [537] [538] [539] [540] Underfull \hbox (badness 1072) in paragraph at lines 34968--34972 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 34973--34977 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [541] Underfull \hbox (badness 3343) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [542] [543] [544] [545] Underfull \hbox (badness 10000) in paragraph at lines 35311--35317 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1264) in paragraph at lines 35311--35317 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] Underfull \hbox (badness 3333) in paragraph at lines 37155--37160 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [576] [577] [578] [579] [580] [581] Underfull \vbox (badness 10000) has occurred while \output is active [582] [583] [584] [585] Underfull \hbox (badness 1472) in paragraph at lines 37778--37781 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] Underfull \vbox (badness 3803) has occurred while \output is active [599] Underfull \hbox (badness 10000) in paragraph at lines 38643--38647 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., [600] [601] [602] [603] Underfull \hbox (badness 10000) in paragraph at lines 38891--38894 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [604] [605] Underfull \hbox (badness 10000) in paragraph at lines 39009--39013 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [606] Underfull \hbox (badness 10000) in paragraph at lines 39071--39075 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [607] [608] [609] [610] [611] [612] [613] [614] Underfull \hbox (badness 4013) in paragraph at lines 39584--39586 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / www . twinsun . com / tz / tz-[]link . [615] [616] [617] [618] [619] Underfull \vbox (badness 3803) has occurred while \output is active [620] [621] [622] [623] [624] [625] [626] [627] Underfull \hbox (badness 3460) in paragraph at lines 40424--40427 []\T1/ptm/m/n/10 a [][]con-nec-tion[][][], or a char-ac-ter string nam-ing the file to print to (via Underfull \hbox (badness 1990) in paragraph at lines 40431--40439 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 40431--40439 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [628] [629] [630] [631] Underfull \hbox (badness 10000) in paragraph at lines 40708--40711 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. [632] [633] [634] [635] Underfull \hbox (badness 1917) in paragraph at lines 40936--40943 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] Underfull \hbox (badness 3668) in paragraph at lines 41615--41617 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [647] Underfull \hbox (badness 2401) in paragraph at lines 41721--41725 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [648] [649] [650] Underfull \hbox (badness 2111) in paragraph at lines 41897--41902 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 7362) in paragraph at lines 41913--41918 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [651] [652] [653] [654] [655] [656] [657] [658] [659] Underfull \hbox (badness 5417) in paragraph at lines 42470--42474 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [660] Underfull \hbox (badness 10000) in paragraph at lines 42531--42535 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [661]) (./compiler-pkg.tex [662] Chapter 2. [663] [664] [665] [666]) (./datasets-pkg.tex Chapter 3. [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] Underfull \vbox (badness 1515) has occurred while \output is active [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] Underfull \hbox (badness 6658) in paragraph at lines 3954--3956 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h ttp : / / www . ltrr . arizona . edu / ~hallman / [734] Underfull \vbox (badness 10000) has occurred while \output is active [735] [736] [737] [738] Underfull \vbox (badness 10000) has occurred while \output is active [739] [740] [741] [742] [743] [744] Overfull \vbox (18.9959pt too high) has occurred while \output is active [745] [746] [747]) (./grDevices-pkg.tex [748] Chapter 4. [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] Underfull \hbox (badness 5175) in paragraph at lines 1069--1071 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [766] [767] [768] [769] Underfull \hbox (badness 1852) in paragraph at lines 1266--1269 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [770] [771] [772] Underfull \hbox (badness 1490) in paragraph at lines 1472--1477 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [773] [774] Underfull \hbox (badness 10000) in paragraph at lines 1595--1599 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [775] [776] [777] [778] Underfull \hbox (badness 1325) in paragraph at lines 1878--1888 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [779] [780] Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [781] [782] [783] Underfull \hbox (badness 6758) in paragraph at lines 2144--2147 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [784] [785] [786] [787] [788] [789] [790] [791] [792] Underfull \hbox (badness 10000) in paragraph at lines 2732--2733 [793] [794] [795] [796] [797] [798] [799] [800] Underfull \hbox (badness 10000) in paragraph at lines 3230--3235 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [801] [802] [803] [804] Underfull \hbox (badness 3302) in paragraph at lines 3489--3492 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3503--3505 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1067) in paragraph at lines 4326--4333 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [818] [819] Underfull \hbox (badness 3364) in paragraph at lines 4486--4488 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 https : / / partners . adobe . com / public / [820] Underfull \hbox (badness 1789) in paragraph at lines 4563--4565 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [821] Underfull \hbox (badness 1377) in paragraph at lines 4613--4618 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [822] Underfull \hbox (badness 2671) in paragraph at lines 4640--4648 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4689--4696 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4707--4709 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [823] [824] Underfull \hbox (badness 1057) in paragraph at lines 4818--4823 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and [825] Underfull \hbox (badness 7344) in paragraph at lines 4878--4880 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [826] [827] Underfull \hbox (badness 2035) in paragraph at lines 5002--5011 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [828] Underfull \hbox (badness 10000) in paragraph at lines 5070--5077 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5070--5077 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [829] [830] [831] Underfull \hbox (badness 1546) in paragraph at lines 5212--5220 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [832] Underfull \hbox (badness 1648) in paragraph at lines 5289--5293 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [833] [834] [835] [836] [837] [838] [839] Underfull \hbox (badness 10000) in paragraph at lines 5741--5744 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [840] [841] [842] [843] [844] [845] Underfull \hbox (badness 1189) in paragraph at lines 6138--6140 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [846] [847] Underfull \hbox (badness 10000) in paragraph at lines 6236--6238 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [848] [849] [850] [851] Underfull \hbox (badness 3780) in paragraph at lines 6527--6533 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [852] [853] [854] Underfull \hbox (badness 2680) in paragraph at lines 6728--6730 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [855] [856] [857]) (./graphics-pkg.tex [858] Chapter 5. [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [870] [871] [872] [873] Underfull \vbox (badness 3803) has occurred while \output is active [874] [875] [876] [877] [878] [879] Underfull \hbox (badness 4634) in paragraph at lines 1255--1258 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 1009) in paragraph at lines 2289--2296 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] Underfull \vbox (badness 10000) has occurred while \output is active [919] [920] [921] [922] Underfull \hbox (badness 1867) in paragraph at lines 3931--3935 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [923] [924] [925] [926] [927] [928] [929] [930] Underfull \hbox (badness 1924) in paragraph at lines 4378--4383 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain Underfull \hbox (badness 2529) in paragraph at lines 4409--4412 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [931] [932] [933] [934] [935] Underfull \hbox (badness 10000) in paragraph at lines 4759--4765 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4759--4765 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [936] [937] Underfull \hbox (badness 10000) in paragraph at lines 4890--4893 [938 >/library/graphics/help/figures/mai.pdf>] Underfull \hbox (badness 10000) in paragraph at lines 4951--4953 Underfull \vbox (badness 10000) has occurred while \output is active [939] [940 >/library/graphics/help/figures/oma.pdf>] [941] Underfull \hbox (badness 10000) in paragraph at lines 5141--5143 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [942] Underfull \vbox (badness 3803) has occurred while \output is active [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6612--6613 [][] [965] [966 >/library/graphics/help/figures/pch .pdf>] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] Underfull \hbox (badness 1048) in paragraph at lines 7321--7326 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [977] [978] Underfull \hbox (badness 1102) in paragraph at lines 7437--7440 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] Underfull \hbox (badness 1043) in paragraph at lines 8272--8276 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly en-larged) usual plot-ting sym-bol (\T1/zi4/m/n/10 pch\T1/ptm/m/n/10 ) is drawn . For [993] [994] [995] [996] [997] [998] [999] Underfull \hbox (badness 10000) in paragraph at lines 8675--8677 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8677--8679 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [1000]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.8757 \HeaderA{units}{Graphical Units}{units} [1001] [1002] [1003] [1004]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [1005] [1006] [1007] [1008] [1009] [1010] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 4279) in paragraph at lines 970--979 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] Underfull \vbox (badness 3803) has occurred while \output is active [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] Underfull \hbox (badness 1067) in paragraph at lines 4340--4343 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1078] [1079] [1080] [1081] Underfull \hbox (badness 7256) in paragraph at lines 4585--4587 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] Underfull \hbox (badness 10000) in paragraph at lines 5862--5868 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] Underfull \hbox (badness 7649) in paragraph at lines 6341--6344 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1112] [1113] [1114] [1115]) (./methods-pkg.tex [1116] Chapter 7. [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \vbox (badness 3803) has occurred while \output is active [1125] Underfull \vbox (badness 10000) has occurred while \output is active [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] Underfull \hbox (badness 2237) in paragraph at lines 1386--1388 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] Underfull \hbox (badness 1077) in paragraph at lines 1933--1940 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests [1144] Underfull \hbox (badness 10000) in paragraph at lines 1982--1987 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1982--1987 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1145] [1146] [1147] Underfull \hbox (badness 1242) in paragraph at lines 2215--2220 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1148] [1149] [1150] [1151] [1152] Underfull \hbox (badness 10000) in paragraph at lines 2575--2578 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1153] [1154] Underfull \hbox (badness 1132) in paragraph at lines 2715--2719 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1155] Underfull \hbox (badness 1033) in paragraph at lines 2747--2752 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 1102) in paragraph at lines 3304--3306 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1163] [1164] [1165] [1166] [1167] [1168] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1169] Overfull \hbox (123.02902pt too wide) in paragraph at lines 3765--3766 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longitude = "numeric", altitude = "numeric")) Underfull \hbox (badness 10000) in paragraph at lines 3765--3766 [1170] Overfull \hbox (16.41006pt too wide) in paragraph at lines 3849--3850 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = "numeric") [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 1436) in paragraph at lines 4446--4449 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4475--4481 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4475--4481 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1181] Underfull \hbox (badness 1092) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] Underfull \vbox (badness 10000) has occurred while \output is active [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 5358--5359 []\T1/zi4/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1193] Underfull \hbox (badness 4036) in paragraph at lines 5440--5443 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1194] Underfull \hbox (badness 3803) in paragraph at lines 5515--5517 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1195] [1196] [1197] [1198] Underfull \hbox (badness 1087) in paragraph at lines 5747--5752 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] Underfull \hbox (badness 1675) in paragraph at lines 6454--6460 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1207] [1208] [1209] [1210] Underfull \vbox (badness 10000) has occurred while \output is active [1211] [1212] [1213] [1214]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6976 \aliasA{S4}{S3Part}{S4} [1215] [1216] [1217]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7232 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7234 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7235 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7237 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7238 \aliasA{Summary}{S4groupGeneric}{Summary} [1218] Underfull \hbox (badness 2050) in paragraph at lines 7299--7303 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1219] [1220] [1221] Underfull \hbox (badness 1286) in paragraph at lines 7487--7489 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] Underfull \vbox (badness 10000) has occurred while \output is active [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] Underfull \hbox (badness 1852) in paragraph at lines 10567--10571 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1264] [1265] [1266] [1267]) (./parallel-pkg.tex [1268] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 3386) in paragraph at lines 1268--1271 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1289] [1290] [1291]) (./splines-pkg.tex [1292] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307]) (./stats-pkg.tex [1308] Chapter 10. [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1412) in paragraph at lines 848--850 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] Underfull \hbox (badness 2503) in paragraph at lines 1329--1332 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1330] [1331] [1332] Underfull \hbox (badness 10000) in paragraph at lines 1508--1512 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] Underfull \hbox (badness 3965) in paragraph at lines 2168--2170 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1344] [1345] [1346] [1347] [1348] Underfull \hbox (badness 3965) in paragraph at lines 2510--2512 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] Underfull \hbox (badness 2726) in paragraph at lines 3224--3240 \T1/ptm/m/n/10 We have slightly tweaked the orig-i-nal ``TOMS 708'' al-go-rithm , and en-hanced for [1360] [1361] Underfull \hbox (badness 2503) in paragraph at lines 3354--3357 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] Underfull \hbox (badness 3989) in paragraph at lines 4582--4589 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] Underfull \hbox (badness 2556) in paragraph at lines 5193--5196 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5210--5212 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1392] [1393] [1394] [1395] Underfull \hbox (badness 1142) in paragraph at lines 5451--5463 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1396] [1397] [1398] Underfull \hbox (badness 2503) in paragraph at lines 5599--5603 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] Underfull \hbox (badness 8132) in paragraph at lines 6102--6107 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1407] [1408] [1409] [1410] [1411] Underfull \hbox (badness 7081) in paragraph at lines 6380--6383 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6384--6386 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1412] [1413] [1414] [1415] [1416] Underfull \vbox (badness 3803) has occurred while \output is active [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] Underfull \hbox (badness 10000) in paragraph at lines 7225--7228 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] Underfull \hbox (badness 2626) in paragraph at lines 8860--8863 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1452] Underfull \hbox (badness 2503) in paragraph at lines 8960--8964 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1453] [1454] [1455] [1456] [1457] [1458] Overfull \hbox (3.53955pt too wide) in paragraph at lines 9309--9311 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 4518) in paragraph at lines 10235--10240 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1473] [1474] [1475] [1476] [1477] Underfull \hbox (badness 2142) in paragraph at lines 10577--10580 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10596--10599 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1478] Underfull \hbox (badness 1708) in paragraph at lines 10658--10662 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 1694) in paragraph at lines 11054--11057 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1485] Underfull \hbox (badness 1867) in paragraph at lines 11073--11082 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1486] [1487] [1488] [1489] [1490] Underfull \hbox (badness 10000) in paragraph at lines 11380--11383 []\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds [][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq uiv-a-lent of [1491] [1492]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.hat}) has been already used, duplicate ignored \relax l.11534 \aliasA{hat}{influence.measures}{hat} [1493] [1494] Underfull \hbox (badness 1484) in paragraph at lines 11665--11667 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 4441) in paragraph at lines 12248--12250 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12255--12257 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1505] [1506] [1507] [1508] [1509] [1510] Underfull \hbox (badness 2894) in paragraph at lines 12589--12593 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] Underfull \hbox (badness 4518) in paragraph at lines 13284--13289 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] Underfull \hbox (badness 4518) in paragraph at lines 13931--13936 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1532] [1533] [1534] Underfull \hbox (badness 10000) in paragraph at lines 14069--14073 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 14076--14078 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] Underfull \hbox (badness 2503) in paragraph at lines 15138--15142 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] Underfull \hbox (badness 1584) in paragraph at lines 15650--15656 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] Underfull \hbox (badness 2359) in paragraph at lines 17287--17289 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1587] Underfull \vbox (badness 3803) has occurred while \output is active [1588] Underfull \vbox (badness 10000) has occurred while \output is active [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 1377) in paragraph at lines 18198--18203 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18203--18206 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on [1602] Underfull \hbox (badness 1454) in paragraph at lines 18216--18220 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18224--18228 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] Underfull \hbox (badness 1337) in paragraph at lines 18840--18843 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 3049) in paragraph at lines 19326--19330 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1622] [1623] [1624] [1625] Underfull \hbox (badness 5563) in paragraph at lines 19576--19578 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19579--19582 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 2503) in paragraph at lines 19954--19957 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1632] Underfull \hbox (badness 10000) in paragraph at lines 19981--19983 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 10000) in paragraph at lines 21029--21035 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] Underfull \hbox (badness 1337) in paragraph at lines 22367--22373 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Overfull \hbox (27.74408pt too wide) in paragraph at lines 22912--22912 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1681] [1682] [1683] [1684] [1685] Underfull \hbox (badness 10000) in paragraph at lines 23162--23165 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Underfull \hbox (badness 10000) in paragraph at lines 23747--23750 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1695] Underfull \hbox (badness 3690) in paragraph at lines 23798--23802 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] Underfull \hbox (badness 3439) in paragraph at lines 24268--24274 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1705] [1706] [1707] Underfull \hbox (badness 1867) in paragraph at lines 24465--24467 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallback = use.fallback) \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 PP <- sum(!is.na([][]coef[][][](object))) \T1/ptm/m/n/10 -- wher e in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was Underfull \hbox (badness 1132) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 length(coef(object)) \T1/ptm/m/n/10 which is too large in case o f un-de-ter-mined co-ef-fi-cients, e.g., for [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 10000) in paragraph at lines 24950--24955 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 3514) in paragraph at lines 25992--25997 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1733] Underfull \hbox (badness 3514) in paragraph at lines 26054--26059 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1734] Underfull \hbox (badness 3514) in paragraph at lines 26111--26116 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1735] Underfull \hbox (badness 3514) in paragraph at lines 26172--26178 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1736] [1737] [1738] [1739] Underfull \hbox (badness 3514) in paragraph at lines 26385--26390 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1740] Underfull \hbox (badness 3514) in paragraph at lines 26441--26446 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1741] Underfull \hbox (badness 3514) in paragraph at lines 26499--26504 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1742] Underfull \hbox (badness 3514) in paragraph at lines 26554--26559 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Underfull \hbox (badness 6691) in paragraph at lines 26623--26628 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 5431) in paragraph at lines 27753--27755 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1763] [1764] [1765] Underfull \hbox (badness 5431) in paragraph at lines 27963--27966 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1766] [1767] [1768] [1769] [1770] [1771] Underfull \hbox (badness 1337) in paragraph at lines 28277--28281 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1772] [1773] Underfull \hbox (badness 10000) in paragraph at lines 28394--28397 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1774] [1775] Underfull \hbox (badness 1616) in paragraph at lines 28577--28580 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] Underfull \hbox (badness 10000) in paragraph at lines 29703--29707 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1795] [1796] [1797] Underfull \vbox (badness 10000) has occurred while \output is active [1798] [1799] [1800] Underfull \hbox (badness 1337) in paragraph at lines 30067--30071 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 30551--30555 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] Underfull \hbox (badness 2142) in paragraph at lines 30628--30633 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 x \T1/ptm/m/n/10 (and \T1/zi4/m/n/10 y \T1 /ptm/m/n/10 if ap-pli-ca-ble) are valid, the func-tion now al-ways re-turns, al so in the [1810] Underfull \hbox (badness 5161) in paragraph at lines 30650--30652 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 10000) in paragraph at lines 31032--31037 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1817] [1818]) (./stats4-pkg.tex Chapter 11. [1819] [1820] [1821] [1822] [1823] [1824]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1825] [1826] [1827] [1828]) (./tcltk-pkg.tex Chapter 12. [1829] [1830] [1831] [1832] [1833] [1834] [1835] Underfull \vbox (badness 10000) has occurred while \output is active [1836] Underfull \vbox (badness 10000) has occurred while \output is active [1837] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] [1848] Underfull \hbox (badness 3019) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the ma-cOS GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 ( whose [1849]) (./tools-pkg.tex [1850] Chapter 13. [1851] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1852] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1853] [1854] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1855] [1856] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 1635) in paragraph at lines 1053--1055 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1868] Underfull \hbox (badness 4441) in paragraph at lines 1131--1141 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1869] Underfull \hbox (badness 1014) in paragraph at lines 1153--1155 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1159--1161 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1196--1199 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1196--1199 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1870] [1871] [1872] Underfull \hbox (badness 10000) in paragraph at lines 1365--1367 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1873] [1874] [1875] Underfull \hbox (badness 2293) in paragraph at lines 1539--1541 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1876] [1877] Underfull \hbox (badness 7981) in paragraph at lines 1677--1682 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1684--1686 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1878] [1879] [1880] [1881]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1881 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1882] [1883] [1884] [1885] [1886] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2183--2183 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1887] [1888] [1889] Underfull \hbox (badness 7981) in paragraph at lines 2352--2358 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1890] [1891] [1892] [1893] [1894] [1895] [1896] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2817. [1897] [1898] [1899] [1900] Underfull \hbox (badness 1424) in paragraph at lines 3099--3101 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] Underfull \hbox (badness 10000) in paragraph at lines 3799--3801 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1913] [1914] Underfull \hbox (badness 10000) in paragraph at lines 3938--3941 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1915] [1916] Underfull \hbox (badness 1137) in paragraph at lines 4036--4038 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1917] [1918] [1919] Underfull \hbox (badness 1838) in paragraph at lines 4245--4251 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4245--4251 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1920] Underfull \hbox (badness 5726) in paragraph at lines 4325--4330 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 4325--4330 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1921] [1922] [1923] Underfull \hbox (badness 2197) in paragraph at lines 4474--4484 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 2229) in paragraph at lines 4474--4484 \T1/ptm/m/n/10 fields will al-ways be in-cluded, plus the file name in field \T 1/zi4/m/sl/10 "File" \T1/ptm/m/n/10 if [1924] Underfull \hbox (badness 1571) in paragraph at lines 4537--4541 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1925] [1926] [1927]) (./utils-pkg.tex [1928] Chapter 14. [1929] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1930] [1931] [1932] [1933] [1934] [1935] [1936] Underfull \hbox (badness 10000) in paragraph at lines 546--552 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 546--552 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1937] [1938] Underfull \hbox (badness 5847) in paragraph at lines 660--666 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 660--666 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1939] Underfull \hbox (badness 3861) in paragraph at lines 728--733 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1940] [1941] [1942] Underfull \hbox (badness 1430) in paragraph at lines 893--900 \T1/ptm/m/n/10 in-di-cat-ing that the bib-tex code should be given in ad-di-tio n to the for- Underfull \hbox (badness 1931) in paragraph at lines 893--900 \T1/ptm/m/n/10 mat-ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not mo re than $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 1038) in paragraph at lines 893--900 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x", 1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 893--900 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1943] [1944] [1945] [1946] [1947] [1948] [1949] Underfull \hbox (badness 1371) in paragraph at lines 1375--1377 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 2057) in paragraph at lines 1863--1865 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1958] Underfull \hbox (badness 10000) in paragraph at lines 1958--1960 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1959] [1960] Underfull \hbox (badness 5189) in paragraph at lines 2060--2062 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1961] Underfull \vbox (badness 3803) has occurred while \output is active [1962] [1963] [1964] Underfull \hbox (badness 1661) in paragraph at lines 2278--2285 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1748) in paragraph at lines 2294--2297 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 10000) in paragraph at lines 2703--2707 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing Overfull \hbox (59.4187pt too wide) in paragraph at lines 2708--2711 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](..., header = TRUE, sep = ";", as.is=FALSE)\T1/ptm/m/n/10 , [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] Underfull \hbox (badness 1430) in paragraph at lines 3385--3393 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3434--3440 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] [2011] Underfull \hbox (badness 1371) in paragraph at lines 5271--5273 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [2012] Underfull \hbox (badness 1502) in paragraph at lines 5360--5365 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5360--5365 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2013] [2014] [2015] Underfull \hbox (badness 10000) in paragraph at lines 5533--5542 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2016] Underfull \hbox (badness 2150) in paragraph at lines 5596--5599 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2017] [2018] Underfull \hbox (badness 3118) in paragraph at lines 5733--5735 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5766--5770 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [2019] [2020] Underfull \hbox (badness 1325) in paragraph at lines 5874--5878 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [2021] Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [2022] Underfull \hbox (badness 3219) in paragraph at lines 6030--6037 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [2023] Underfull \hbox (badness 10000) in paragraph at lines 6110--6115 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] [2045] [2046] [2047] Underfull \hbox (badness 10000) in paragraph at lines 7527--7529 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7532--7537 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 1789) in paragraph at lines 8087--8089 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] Underfull \hbox (badness 1097) in paragraph at lines 8916--8919 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2069] Underfull \hbox (badness 3000) in paragraph at lines 9052--9057 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 2134) in paragraph at lines 9635--9640 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [2079] [2080] [2081] [2082] [2083] [2084] [2085] Underfull \hbox (badness 5077) in paragraph at lines 10060--10064 []\T1/zi4/m/sl/10 as.roman \T1/ptm/m/n/10 cre-ates ob-jects of class \T1/zi4/m/ sl/10 "roman" \T1/ptm/m/n/10 which are in-ter-nally rep-re-sented as in-te- Underfull \hbox (badness 2269) in paragraph at lines 10060--10064 \T1/ptm/m/n/10 gers, and have suit-able meth-ods for print-ing, for-mat-ting, s ub-set-ting, co-er-cion, etc, see Underfull \hbox (badness 2469) in paragraph at lines 10072--10076 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 10072--10076 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2086] [2087] [2088] [2089] [2090] Overfull \hbox (18.77168pt too wide) in paragraph at lines 10366--10366 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2091] Underfull \hbox (badness 10000) in paragraph at lines 10429--10431 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [2092] [2093] [2094] Underfull \hbox (badness 2150) in paragraph at lines 10605--10607 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2095] [2096] [2097] [2098] Underfull \hbox (badness 10000) in paragraph at lines 10824--10828 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 10855--10861 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2099] [2100] Underfull \hbox (badness 2096) in paragraph at lines 10973--10976 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10977--10980 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [2101] Underfull \hbox (badness 1009) in paragraph at lines 11049--11060 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2102] [2103] [2104] [2105] [2106] Underfull \hbox (badness 3780) in paragraph at lines 11355--11359 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 11374--11377 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 2818) in paragraph at lines 11746--11751 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 11755--11758 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2113] [2114] [2115] [2116] [2117] Underfull \hbox (badness 10000) in paragraph at lines 12018--12020 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2118] [2119] Underfull \hbox (badness 1057) in paragraph at lines 12175--12182 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, [2120] [2121] [2122] [2123] Underfull \hbox (badness 6510) in paragraph at lines 12434--12438 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 12441--12444 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 12441--12444 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Underfull \hbox (badness 10000) in paragraph at lines 12983--12985 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 12986--12988 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2132] Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 1297) in paragraph at lines 13016--13021 \T1/zi4/m/sl/10 available.packages(contriburl = contriburl, method = method) \T 1/ptm/m/n/10 and hence by Underfull \hbox (badness 10000) in paragraph at lines 13045--13048 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2133] [2134] [2135] [2136] Overfull \hbox (23.85939pt too wide) in paragraph at lines 13287--13290 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2137] [2138] Underfull \hbox (badness 1454) in paragraph at lines 13364--13368 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2139] Underfull \hbox (badness 10000) in paragraph at lines 13434--13436 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2140] [2141] [2142]) No file fullrefman.ind. (./fullrefman.aux) Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do es not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/ texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb> Output written on fullrefman.pdf (2145 pages, 5324307 bytes). Transcript written on fullrefman.log. This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning input file fullrefman.idx.................done (13381 entries accepted, 34 rejected). Sorting entries..............................................................................................................................................done (207681 comparisons). Generating output file fullrefman.ind................done (13222 lines written, 49 warnings). Output written in fullrefman.ind. Transcript written in fullrefman.ilg. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2017-04-15> Babel <3.15> and hyphenation patterns for 3 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.112, 2017/01/04 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 366. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 366. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx (./fullrefman.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./fullrefman.out) (./fullrefman.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28]) [29] [30] (./base-pkg.tex Chapter 1. [1] [2] Underfull \hbox (badness 2547) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 296--300 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] Underfull \hbox (badness 3977) in paragraph at lines 385--388 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [7] [8] Underfull \hbox (badness 2556) in paragraph at lines 533--539 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1144--1147 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1901--1901 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2086--2088 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Underfull \vbox (badness 10000) has occurred while \output is active [50] [51] [52] [53] [54] [55] [56] Underfull \hbox (badness 10000) in paragraph at lines 3607--3609 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [57] [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 3848--3848 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 4823--4825 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Overfull \hbox (5.27168pt too wide) in paragraph at lines 5954--5954 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [94] [95] [96] Underfull \hbox (badness 2096) in paragraph at lines 6137--6150 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [97] [98] [99] Overfull \hbox (56.34871pt too wide) in paragraph at lines 6341--6343 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 6483--6486 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [102] [103] Underfull \hbox (badness 1442) in paragraph at lines 6646--6652 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [104] Underfull \hbox (badness 3568) in paragraph at lines 6708--6715 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] [109] Underfull \hbox (badness 1077) in paragraph at lines 7019--7025 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7019--7025 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [110] [111] [112] [113] [114] Underfull \hbox (badness 2096) in paragraph at lines 7360--7364 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [115] [116] Underfull \hbox (badness 3000) in paragraph at lines 7453--7455 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7478--7481 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [117] [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 7733--7743 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [121] [122] Underfull \hbox (badness 4479) in paragraph at lines 7804--7814 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1394) in paragraph at lines 9477--9482 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [148] [149] [150] [151] [152] Underfull \hbox (badness 1194) in paragraph at lines 9822--9827 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9822--9827 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [153] [154] Underfull \hbox (badness 1735) in paragraph at lines 9960--9964 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [155] [156] [157] [158] [159] [160] [161] Underfull \hbox (badness 2150) in paragraph at lines 10375--10378 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 10389--10397 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2735) in paragraph at lines 10429--10436 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] Underfull \hbox (badness 4569) in paragraph at lines 11493--11497 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11493--11497 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [178] [179] [180] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 2698) in paragraph at lines 12070--12079 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 12070--12079 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [187] [188] [189] [190] [191] Underfull \vbox (badness 3803) has occurred while \output is active [192] [193] [194] [195] [196] Underfull \hbox (badness 6236) in paragraph at lines 12729--12732 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [197] [198] [199] [200] [201] [202] Underfull \hbox (badness 2253) in paragraph at lines 13141--13143 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [203] Underfull \hbox (badness 1565) in paragraph at lines 13212--13216 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [204] Underfull \hbox (badness 10000) in paragraph at lines 13256--13258 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [205] [206] Underfull \hbox (badness 1466) in paragraph at lines 13396--13399 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [207] [208] Underfull \hbox (badness 10000) in paragraph at lines 13514--13518 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13525--13528 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [209] [210] [211] [212] Underfull \hbox (badness 3965) in paragraph at lines 13788--13792 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] Underfull \hbox (badness 4429) in paragraph at lines 14550--14553 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [225] [226] Underfull \hbox (badness 10000) in paragraph at lines 14650--14652 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14656--14660 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 10000) in paragraph at lines 14695--14699 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14695--14699 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] Underfull \hbox (badness 2452) in paragraph at lines 15284--15288 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15284--15288 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [237] [238] [239] Underfull \hbox (badness 1092) in paragraph at lines 15457--15462 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [240] [241] [242] Underfull \hbox (badness 6741) in paragraph at lines 15705--15709 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [243] [244] [245] [246] [247] Underfull \hbox (badness 1867) in paragraph at lines 16011--16018 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [248] [249] [250] [251] Underfull \vbox (badness 10000) has occurred while \output is active [252] [253] [254] Underfull \hbox (badness 3679) in paragraph at lines 16421--16423 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 1478) in paragraph at lines 16976--16979 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [263] [264] [265] Underfull \hbox (badness 10000) in paragraph at lines 17229--17231 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [266] [267] [268] [269] [270] [271] [272] [273] [274] [275] Underfull \hbox (badness 1442) in paragraph at lines 17819--17821 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [276] Underfull \hbox (badness 2452) in paragraph at lines 17911--17927 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [277] [278] [279] [280] [281] [282] [283] Underfull \hbox (badness 1248) in paragraph at lines 18325--18328 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [284] [285] [286] [287] Underfull \hbox (badness 4739) in paragraph at lines 18583--18585 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 2469) in paragraph at lines 19600--19605 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and Underfull \hbox (badness 10000) in paragraph at lines 19614--19621 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / [305] Underfull \hbox (badness 10000) in paragraph at lines 19688--19692 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 19688--19692 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [306] [307] Underfull \hbox (badness 1509) in paragraph at lines 19823--19830 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1552) in paragraph at lines 19823--19830 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 19839--19844 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] [318] Underfull \hbox (badness 1264) in paragraph at lines 20572--20577 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [319] Underfull \hbox (badness 4441) in paragraph at lines 20601--20604 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] Underfull \hbox (badness 10000) in paragraph at lines 21327--21329 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] [346] Underfull \hbox (badness 1077) in paragraph at lines 22362--22368 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [347] [348] [349] Underfull \hbox (badness 1484) in paragraph at lines 22523--22531 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [350] [351] [352] [353] Underfull \hbox (badness 2790) in paragraph at lines 22794--22797 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 22794--22797 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [354] [355] [356] [357] Underfull \hbox (badness 1194) in paragraph at lines 23076--23079 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [358] [359] [360] [361] Underfull \hbox (badness 10000) in paragraph at lines 23282--23288 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 7379) in paragraph at lines 23282--23288 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] Underfull \hbox (badness 10000) in paragraph at lines 24242--24244 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [376] [377] [378] [379] Underfull \hbox (badness 1199) in paragraph at lines 24486--24492 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 24486--24492 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [380] [381] [382] [383] [384] [385] [386] [387] [388] Underfull \hbox (badness 1038) in paragraph at lines 25065--25073 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 25074--25077 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25093--25095 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [389] Underfull \hbox (badness 10000) in paragraph at lines 25202--25212 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 25213--25219 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [390] Underfull \hbox (badness 1968) in paragraph at lines 25249--25254 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 25259--25261 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [391] [392] [393] Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 25531--25534 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 25555--25557 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [394] Underfull \hbox (badness 10000) in paragraph at lines 25587--25592 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 25593--25604 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 25605--25608 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3713) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN ma-cOS build), Underfull \hbox (badness 7944) in paragraph at lines 25615--25627 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). Underfull \hbox (badness 2351) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/z i4/m/n/10 "mac.binary.mavericks"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.leo pard"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 25629--25636 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1874) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [395] [396] [397] [398] [399] Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [400] [401] [402] [403] [404] Underfull \hbox (badness 1735) in paragraph at lines 26294--26298 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] Underfull \hbox (badness 2726) in paragraph at lines 26865--26868 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] Underfull \hbox (badness 1052) in paragraph at lines 27692--27697 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [428] [429] [430] [431] [432] Underfull \vbox (badness 10000) has occurred while \output is active [433] [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 1533) in paragraph at lines 28501--28504 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [440] [441] [442] Underfull \hbox (badness 1163) in paragraph at lines 28663--28674 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] Underfull \hbox (badness 10000) in paragraph at lines 30186--30190 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 30186--30190 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 30208--30210 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [467] [468] [469] [470] [471] [472] [473] [474] [475] Underfull \hbox (badness 1655) in paragraph at lines 30756--30758 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] Underfull \hbox (badness 10000) in paragraph at lines 31431--31435 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [487] [488] [489] [490] Underfull \hbox (badness 2302) in paragraph at lines 31671--31678 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 3333) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [491] [492] Underfull \hbox (badness 2261) in paragraph at lines 31827--31832 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 31854--31860 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [493] Underfull \hbox (badness 10000) in paragraph at lines 31930--31935 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] Underfull \vbox (badness 3803) has occurred while \output is active [533] [534] [535] [536] [537] [538] [539] [540] Underfull \hbox (badness 1072) in paragraph at lines 34968--34972 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 34973--34977 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [541] Underfull \hbox (badness 3343) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [542] [543] [544] [545] Underfull \hbox (badness 10000) in paragraph at lines 35311--35317 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1264) in paragraph at lines 35311--35317 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] Underfull \hbox (badness 3333) in paragraph at lines 37155--37160 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [576] [577] [578] [579] [580] [581] Underfull \vbox (badness 10000) has occurred while \output is active [582] [583] [584] [585] Underfull \hbox (badness 1472) in paragraph at lines 37778--37781 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] Underfull \vbox (badness 3803) has occurred while \output is active [599] Underfull \hbox (badness 10000) in paragraph at lines 38643--38647 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., [600] [601] [602] [603] Underfull \hbox (badness 10000) in paragraph at lines 38891--38894 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [604] [605] Underfull \hbox (badness 10000) in paragraph at lines 39009--39013 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [606] Underfull \hbox (badness 10000) in paragraph at lines 39071--39075 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [607] [608] [609] [610] [611] [612] [613] [614] Underfull \hbox (badness 4013) in paragraph at lines 39584--39586 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / www . twinsun . com / tz / tz-[]link . [615] [616] [617] [618] [619] Underfull \vbox (badness 3803) has occurred while \output is active [620] [621] [622] [623] [624] [625] [626] [627] Underfull \hbox (badness 3460) in paragraph at lines 40424--40427 []\T1/ptm/m/n/10 a [][]con-nec-tion[][][], or a char-ac-ter string nam-ing the file to print to (via Underfull \hbox (badness 1990) in paragraph at lines 40431--40439 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 40431--40439 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [628] [629] [630] [631] Underfull \hbox (badness 10000) in paragraph at lines 40708--40711 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. [632] [633] [634] [635] Underfull \hbox (badness 1917) in paragraph at lines 40936--40943 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] Underfull \hbox (badness 3668) in paragraph at lines 41615--41617 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [647] Underfull \hbox (badness 2401) in paragraph at lines 41721--41725 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [648] [649] [650] Underfull \hbox (badness 2111) in paragraph at lines 41897--41902 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 7362) in paragraph at lines 41913--41918 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [651] [652] [653] [654] [655] [656] [657] [658] [659] Underfull \hbox (badness 5417) in paragraph at lines 42470--42474 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [660] Underfull \hbox (badness 10000) in paragraph at lines 42531--42535 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [661]) (./compiler-pkg.tex [662] Chapter 2. [663] [664] [665] [666]) (./datasets-pkg.tex Chapter 3. [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] Underfull \vbox (badness 1515) has occurred while \output is active [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] Underfull \hbox (badness 6658) in paragraph at lines 3954--3956 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h ttp : / / www . ltrr . arizona . edu / ~hallman / [734] Underfull \vbox (badness 10000) has occurred while \output is active [735] [736] [737] [738] Underfull \vbox (badness 10000) has occurred while \output is active [739] [740] [741] [742] [743] [744] Overfull \vbox (18.9959pt too high) has occurred while \output is active [745] [746] [747]) (./grDevices-pkg.tex [748] Chapter 4. [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] Underfull \hbox (badness 5175) in paragraph at lines 1069--1071 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [766] [767] [768] [769] Underfull \hbox (badness 1852) in paragraph at lines 1266--1269 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [770] [771] [772] Underfull \hbox (badness 1490) in paragraph at lines 1472--1477 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [773] [774] Underfull \hbox (badness 10000) in paragraph at lines 1595--1599 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [775] [776] [777] [778] Underfull \hbox (badness 1325) in paragraph at lines 1878--1888 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [779] [780] Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [781] [782] [783] Underfull \hbox (badness 6758) in paragraph at lines 2144--2147 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [784] [785] [786] [787] [788] [789] [790] [791] [792] Underfull \hbox (badness 10000) in paragraph at lines 2732--2733 [793] [794] [795] [796] [797] [798] [799] [800] Underfull \hbox (badness 10000) in paragraph at lines 3230--3235 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [801] [802] [803] [804] Underfull \hbox (badness 3302) in paragraph at lines 3489--3492 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3503--3505 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1067) in paragraph at lines 4326--4333 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [818] [819] Underfull \hbox (badness 3364) in paragraph at lines 4486--4488 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 https : / / partners . adobe . com / public / [820] Underfull \hbox (badness 1789) in paragraph at lines 4563--4565 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [821] Underfull \hbox (badness 1377) in paragraph at lines 4613--4618 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [822] Underfull \hbox (badness 2671) in paragraph at lines 4640--4648 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4689--4696 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4707--4709 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [823] [824] Underfull \hbox (badness 1057) in paragraph at lines 4818--4823 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and [825] Underfull \hbox (badness 7344) in paragraph at lines 4878--4880 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [826] [827] Underfull \hbox (badness 2035) in paragraph at lines 5002--5011 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [828] Underfull \hbox (badness 10000) in paragraph at lines 5070--5077 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5070--5077 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [829] [830] [831] Underfull \hbox (badness 1546) in paragraph at lines 5212--5220 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [832] Underfull \hbox (badness 1648) in paragraph at lines 5289--5293 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [833] [834] [835] [836] [837] [838] [839] Underfull \hbox (badness 10000) in paragraph at lines 5741--5744 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [840] [841] [842] [843] [844] [845] Underfull \hbox (badness 1189) in paragraph at lines 6138--6140 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [846] [847] Underfull \hbox (badness 10000) in paragraph at lines 6236--6238 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [848] [849] [850] [851] Underfull \hbox (badness 3780) in paragraph at lines 6527--6533 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [852] [853] [854] Underfull \hbox (badness 2680) in paragraph at lines 6728--6730 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [855] [856] [857]) (./graphics-pkg.tex [858] Chapter 5. [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [870] [871] [872] [873] Underfull \vbox (badness 3803) has occurred while \output is active [874] [875] [876] [877] [878] [879] Underfull \hbox (badness 4634) in paragraph at lines 1255--1258 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 1009) in paragraph at lines 2289--2296 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] Underfull \vbox (badness 10000) has occurred while \output is active [919] [920] [921] [922] Underfull \hbox (badness 1867) in paragraph at lines 3931--3935 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [923] [924] [925] [926] [927] [928] [929] [930] Underfull \hbox (badness 1924) in paragraph at lines 4378--4383 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain Underfull \hbox (badness 2529) in paragraph at lines 4409--4412 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [931] [932] [933] [934] [935] Underfull \hbox (badness 10000) in paragraph at lines 4759--4765 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4759--4765 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [936] [937] Underfull \hbox (badness 10000) in paragraph at lines 4890--4893 [938 >/library/graphics/help/figures/mai.pdf>] Underfull \hbox (badness 10000) in paragraph at lines 4951--4953 Underfull \vbox (badness 10000) has occurred while \output is active [939] [940 >/library/graphics/help/figures/oma.pdf>] [941] Underfull \hbox (badness 10000) in paragraph at lines 5141--5143 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [942] Underfull \vbox (badness 3803) has occurred while \output is active [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6612--6613 [][] [965] [966 >/library/graphics/help/figures/pch .pdf>] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] Underfull \hbox (badness 1048) in paragraph at lines 7321--7326 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [977] [978] Underfull \hbox (badness 1102) in paragraph at lines 7437--7440 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] Underfull \hbox (badness 1043) in paragraph at lines 8272--8276 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly en-larged) usual plot-ting sym-bol (\T1/zi4/m/n/10 pch\T1/ptm/m/n/10 ) is drawn . For [993] [994] [995] [996] [997] [998] [999] Underfull \hbox (badness 10000) in paragraph at lines 8675--8677 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8677--8679 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [1000]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.8757 \HeaderA{units}{Graphical Units}{units} [1001] [1002] [1003] [1004]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [1005] [1006] [1007] [1008] [1009] [1010] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 4279) in paragraph at lines 970--979 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] Underfull \vbox (badness 3803) has occurred while \output is active [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] Underfull \hbox (badness 1067) in paragraph at lines 4340--4343 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1078] [1079] [1080] [1081] Underfull \hbox (badness 7256) in paragraph at lines 4585--4587 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] Underfull \hbox (badness 10000) in paragraph at lines 5862--5868 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] Underfull \hbox (badness 7649) in paragraph at lines 6341--6344 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1112] [1113] [1114] [1115]) (./methods-pkg.tex [1116] Chapter 7. [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \vbox (badness 3803) has occurred while \output is active [1125] Underfull \vbox (badness 10000) has occurred while \output is active [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] Underfull \hbox (badness 2237) in paragraph at lines 1386--1388 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] Underfull \hbox (badness 1077) in paragraph at lines 1933--1940 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests [1144] Underfull \hbox (badness 10000) in paragraph at lines 1982--1987 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1982--1987 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1145] [1146] [1147] Underfull \hbox (badness 1242) in paragraph at lines 2215--2220 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1148] [1149] [1150] [1151] [1152] Underfull \hbox (badness 10000) in paragraph at lines 2575--2578 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1153] [1154] Underfull \hbox (badness 1132) in paragraph at lines 2715--2719 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1155] Underfull \hbox (badness 1033) in paragraph at lines 2747--2752 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 1102) in paragraph at lines 3304--3306 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1163] [1164] [1165] [1166] [1167] [1168] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1169] Overfull \hbox (123.02902pt too wide) in paragraph at lines 3765--3766 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longitude = "numeric", altitude = "numeric")) Underfull \hbox (badness 10000) in paragraph at lines 3765--3766 [1170] Overfull \hbox (16.41006pt too wide) in paragraph at lines 3849--3850 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = "numeric") [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 1436) in paragraph at lines 4446--4449 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4475--4481 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4475--4481 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1181] Underfull \hbox (badness 1092) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] Underfull \vbox (badness 10000) has occurred while \output is active [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 5358--5359 []\T1/zi4/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1193] Underfull \hbox (badness 4036) in paragraph at lines 5440--5443 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1194] Underfull \hbox (badness 3803) in paragraph at lines 5515--5517 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1195] [1196] [1197] [1198] Underfull \hbox (badness 1087) in paragraph at lines 5747--5752 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] Underfull \hbox (badness 1675) in paragraph at lines 6454--6460 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1207] [1208] [1209] [1210] Underfull \vbox (badness 10000) has occurred while \output is active [1211] [1212] [1213] [1214]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6976 \aliasA{S4}{S3Part}{S4} [1215] [1216] [1217]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7232 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7234 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7235 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7237 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7238 \aliasA{Summary}{S4groupGeneric}{Summary} [1218] Underfull \hbox (badness 2050) in paragraph at lines 7299--7303 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1219] [1220] [1221] Underfull \hbox (badness 1286) in paragraph at lines 7487--7489 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] Underfull \vbox (badness 10000) has occurred while \output is active [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] Underfull \hbox (badness 1852) in paragraph at lines 10567--10571 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1264] [1265] [1266] [1267]) (./parallel-pkg.tex [1268] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 3386) in paragraph at lines 1268--1271 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1289] [1290] [1291]) (./splines-pkg.tex [1292] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307]) (./stats-pkg.tex [1308] Chapter 10. [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1412) in paragraph at lines 848--850 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] Underfull \hbox (badness 2503) in paragraph at lines 1329--1332 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1330] [1331] [1332] Underfull \hbox (badness 10000) in paragraph at lines 1508--1512 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] Underfull \hbox (badness 3965) in paragraph at lines 2168--2170 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1344] [1345] [1346] [1347] [1348] Underfull \hbox (badness 3965) in paragraph at lines 2510--2512 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] Underfull \hbox (badness 2726) in paragraph at lines 3224--3240 \T1/ptm/m/n/10 We have slightly tweaked the orig-i-nal ``TOMS 708'' al-go-rithm , and en-hanced for [1360] [1361] Underfull \hbox (badness 2503) in paragraph at lines 3354--3357 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] Underfull \hbox (badness 3989) in paragraph at lines 4582--4589 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] Underfull \hbox (badness 2556) in paragraph at lines 5193--5196 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5210--5212 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1392] [1393] [1394] [1395] Underfull \hbox (badness 1142) in paragraph at lines 5451--5463 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1396] [1397] [1398] Underfull \hbox (badness 2503) in paragraph at lines 5599--5603 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] Underfull \hbox (badness 8132) in paragraph at lines 6102--6107 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1407] [1408] [1409] [1410] [1411] Underfull \hbox (badness 7081) in paragraph at lines 6380--6383 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6384--6386 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1412] [1413] [1414] [1415] [1416] Underfull \vbox (badness 3803) has occurred while \output is active [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] Underfull \hbox (badness 10000) in paragraph at lines 7225--7228 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] Underfull \hbox (badness 2626) in paragraph at lines 8860--8863 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1452] Underfull \hbox (badness 2503) in paragraph at lines 8960--8964 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1453] [1454] [1455] [1456] [1457] [1458] Overfull \hbox (3.53955pt too wide) in paragraph at lines 9309--9311 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 4518) in paragraph at lines 10235--10240 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1473] [1474] [1475] [1476] [1477] Underfull \hbox (badness 2142) in paragraph at lines 10577--10580 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10596--10599 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1478] Underfull \hbox (badness 1708) in paragraph at lines 10658--10662 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 1694) in paragraph at lines 11054--11057 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1485] Underfull \hbox (badness 1867) in paragraph at lines 11073--11082 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1486] [1487] [1488] [1489] [1490] Underfull \hbox (badness 10000) in paragraph at lines 11380--11383 []\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds [][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq uiv-a-lent of [1491] [1492]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.hat}) has been already used, duplicate ignored \relax l.11534 \aliasA{hat}{influence.measures}{hat} [1493] [1494] Underfull \hbox (badness 1484) in paragraph at lines 11665--11667 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 4441) in paragraph at lines 12248--12250 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12255--12257 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1505] [1506] [1507] [1508] [1509] [1510] Underfull \hbox (badness 2894) in paragraph at lines 12589--12593 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] Underfull \hbox (badness 4518) in paragraph at lines 13284--13289 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] Underfull \hbox (badness 4518) in paragraph at lines 13931--13936 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1532] [1533] [1534] Underfull \hbox (badness 10000) in paragraph at lines 14069--14073 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 14076--14078 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] Underfull \hbox (badness 2503) in paragraph at lines 15138--15142 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] Underfull \hbox (badness 1584) in paragraph at lines 15650--15656 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] Underfull \hbox (badness 2359) in paragraph at lines 17287--17289 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1587] Underfull \vbox (badness 3803) has occurred while \output is active [1588] Underfull \vbox (badness 10000) has occurred while \output is active [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 1377) in paragraph at lines 18198--18203 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18203--18206 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on [1602] Underfull \hbox (badness 1454) in paragraph at lines 18216--18220 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18224--18228 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] Underfull \hbox (badness 1337) in paragraph at lines 18840--18843 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 3049) in paragraph at lines 19326--19330 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1622] [1623] [1624] [1625] Underfull \hbox (badness 5563) in paragraph at lines 19576--19578 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19579--19582 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 2503) in paragraph at lines 19954--19957 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1632] Underfull \hbox (badness 10000) in paragraph at lines 19981--19983 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 10000) in paragraph at lines 21029--21035 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] Underfull \hbox (badness 1337) in paragraph at lines 22367--22373 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Overfull \hbox (27.74408pt too wide) in paragraph at lines 22912--22912 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1681] [1682] [1683] [1684] [1685] Underfull \hbox (badness 10000) in paragraph at lines 23162--23165 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Underfull \hbox (badness 10000) in paragraph at lines 23747--23750 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1695] Underfull \hbox (badness 3690) in paragraph at lines 23798--23802 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] Underfull \hbox (badness 3439) in paragraph at lines 24268--24274 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1705] [1706] [1707] Underfull \hbox (badness 1867) in paragraph at lines 24465--24467 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallback = use.fallback) \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 PP <- sum(!is.na([][]coef[][][](object))) \T1/ptm/m/n/10 -- wher e in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was Underfull \hbox (badness 1132) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 length(coef(object)) \T1/ptm/m/n/10 which is too large in case o f un-de-ter-mined co-ef-fi-cients, e.g., for [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 10000) in paragraph at lines 24950--24955 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 3514) in paragraph at lines 25992--25997 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1733] Underfull \hbox (badness 3514) in paragraph at lines 26054--26059 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1734] Underfull \hbox (badness 3514) in paragraph at lines 26111--26116 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1735] Underfull \hbox (badness 3514) in paragraph at lines 26172--26178 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1736] [1737] [1738] [1739] Underfull \hbox (badness 3514) in paragraph at lines 26385--26390 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1740] Underfull \hbox (badness 3514) in paragraph at lines 26441--26446 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1741] Underfull \hbox (badness 3514) in paragraph at lines 26499--26504 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1742] Underfull \hbox (badness 3514) in paragraph at lines 26554--26559 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Underfull \hbox (badness 6691) in paragraph at lines 26623--26628 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 5431) in paragraph at lines 27753--27755 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1763] [1764] [1765] Underfull \hbox (badness 5431) in paragraph at lines 27963--27966 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1766] [1767] [1768] [1769] [1770] [1771] Underfull \hbox (badness 1337) in paragraph at lines 28277--28281 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1772] [1773] Underfull \hbox (badness 10000) in paragraph at lines 28394--28397 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1774] [1775] Underfull \hbox (badness 1616) in paragraph at lines 28577--28580 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] Underfull \hbox (badness 10000) in paragraph at lines 29703--29707 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1795] [1796] [1797] Underfull \vbox (badness 10000) has occurred while \output is active [1798] [1799] [1800] Underfull \hbox (badness 1337) in paragraph at lines 30067--30071 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 30551--30555 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] Underfull \hbox (badness 2142) in paragraph at lines 30628--30633 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 x \T1/ptm/m/n/10 (and \T1/zi4/m/n/10 y \T1 /ptm/m/n/10 if ap-pli-ca-ble) are valid, the func-tion now al-ways re-turns, al so in the [1810] Underfull \hbox (badness 5161) in paragraph at lines 30650--30652 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 10000) in paragraph at lines 31032--31037 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1817] [1818]) (./stats4-pkg.tex Chapter 11. [1819] [1820] [1821] [1822] [1823] [1824]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1825] [1826] [1827] [1828]) (./tcltk-pkg.tex Chapter 12. [1829] [1830] [1831] [1832] [1833] [1834] [1835] Underfull \vbox (badness 10000) has occurred while \output is active [1836] Underfull \vbox (badness 10000) has occurred while \output is active [1837] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] [1848] Underfull \hbox (badness 3019) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the ma-cOS GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 ( whose [1849]) (./tools-pkg.tex [1850] Chapter 13. [1851] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1852] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1853] [1854] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1855] [1856] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 1635) in paragraph at lines 1053--1055 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1868] Underfull \hbox (badness 4441) in paragraph at lines 1131--1141 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1869] Underfull \hbox (badness 1014) in paragraph at lines 1153--1155 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1159--1161 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1196--1199 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1196--1199 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1870] [1871] [1872] Underfull \hbox (badness 10000) in paragraph at lines 1365--1367 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1873] [1874] [1875] Underfull \hbox (badness 2293) in paragraph at lines 1539--1541 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1876] [1877] Underfull \hbox (badness 7981) in paragraph at lines 1677--1682 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1684--1686 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1878] [1879] [1880] [1881]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1881 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1882] [1883] [1884] [1885] [1886] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2183--2183 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1887] [1888] [1889] Underfull \hbox (badness 7981) in paragraph at lines 2352--2358 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1890] [1891] [1892] [1893] [1894] [1895] [1896] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2817. [1897] [1898] [1899] [1900] Underfull \hbox (badness 1424) in paragraph at lines 3099--3101 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] Underfull \hbox (badness 10000) in paragraph at lines 3799--3801 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1913] [1914] Underfull \hbox (badness 10000) in paragraph at lines 3938--3941 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1915] [1916] Underfull \hbox (badness 1137) in paragraph at lines 4036--4038 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1917] [1918] [1919] Underfull \hbox (badness 1838) in paragraph at lines 4245--4251 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4245--4251 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1920] Underfull \hbox (badness 5726) in paragraph at lines 4325--4330 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 4325--4330 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1921] [1922] [1923] Underfull \hbox (badness 2197) in paragraph at lines 4474--4484 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 2229) in paragraph at lines 4474--4484 \T1/ptm/m/n/10 fields will al-ways be in-cluded, plus the file name in field \T 1/zi4/m/sl/10 "File" \T1/ptm/m/n/10 if [1924] Underfull \hbox (badness 1571) in paragraph at lines 4537--4541 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1925] [1926] [1927]) (./utils-pkg.tex [1928] Chapter 14. [1929] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1930] [1931] [1932] [1933] [1934] [1935] [1936] Underfull \hbox (badness 10000) in paragraph at lines 546--552 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 546--552 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1937] [1938] Underfull \hbox (badness 5847) in paragraph at lines 660--666 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 660--666 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1939] Underfull \hbox (badness 3861) in paragraph at lines 728--733 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1940] [1941] [1942] Underfull \hbox (badness 1430) in paragraph at lines 893--900 \T1/ptm/m/n/10 in-di-cat-ing that the bib-tex code should be given in ad-di-tio n to the for- Underfull \hbox (badness 1931) in paragraph at lines 893--900 \T1/ptm/m/n/10 mat-ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not mo re than $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 1038) in paragraph at lines 893--900 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x", 1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 893--900 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1943] [1944] [1945] [1946] [1947] [1948] [1949] Underfull \hbox (badness 1371) in paragraph at lines 1375--1377 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 2057) in paragraph at lines 1863--1865 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1958] Underfull \hbox (badness 10000) in paragraph at lines 1958--1960 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1959] [1960] Underfull \hbox (badness 5189) in paragraph at lines 2060--2062 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1961] Underfull \vbox (badness 3803) has occurred while \output is active [1962] [1963] [1964] Underfull \hbox (badness 1661) in paragraph at lines 2278--2285 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1748) in paragraph at lines 2294--2297 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 10000) in paragraph at lines 2703--2707 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing Overfull \hbox (59.4187pt too wide) in paragraph at lines 2708--2711 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](..., header = TRUE, sep = ";", as.is=FALSE)\T1/ptm/m/n/10 , [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] Underfull \hbox (badness 1430) in paragraph at lines 3385--3393 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3434--3440 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] [2011] Underfull \hbox (badness 1371) in paragraph at lines 5271--5273 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [2012] Underfull \hbox (badness 1502) in paragraph at lines 5360--5365 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5360--5365 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2013] [2014] [2015] Underfull \hbox (badness 10000) in paragraph at lines 5533--5542 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2016] Underfull \hbox (badness 2150) in paragraph at lines 5596--5599 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2017] [2018] Underfull \hbox (badness 3118) in paragraph at lines 5733--5735 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5766--5770 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [2019] [2020] Underfull \hbox (badness 1325) in paragraph at lines 5874--5878 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [2021] Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [2022] Underfull \hbox (badness 3219) in paragraph at lines 6030--6037 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [2023] Underfull \hbox (badness 10000) in paragraph at lines 6110--6115 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] [2045] [2046] [2047] Underfull \hbox (badness 10000) in paragraph at lines 7527--7529 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7532--7537 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 1789) in paragraph at lines 8087--8089 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] Underfull \hbox (badness 1097) in paragraph at lines 8916--8919 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2069] Underfull \hbox (badness 3000) in paragraph at lines 9052--9057 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 2134) in paragraph at lines 9635--9640 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [2079] [2080] [2081] [2082] [2083] [2084] [2085] Underfull \hbox (badness 5077) in paragraph at lines 10060--10064 []\T1/zi4/m/sl/10 as.roman \T1/ptm/m/n/10 cre-ates ob-jects of class \T1/zi4/m/ sl/10 "roman" \T1/ptm/m/n/10 which are in-ter-nally rep-re-sented as in-te- Underfull \hbox (badness 2269) in paragraph at lines 10060--10064 \T1/ptm/m/n/10 gers, and have suit-able meth-ods for print-ing, for-mat-ting, s ub-set-ting, co-er-cion, etc, see Underfull \hbox (badness 2469) in paragraph at lines 10072--10076 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 10072--10076 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2086] [2087] [2088] [2089] [2090] Overfull \hbox (18.77168pt too wide) in paragraph at lines 10366--10366 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2091] Underfull \hbox (badness 10000) in paragraph at lines 10429--10431 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [2092] [2093] [2094] Underfull \hbox (badness 2150) in paragraph at lines 10605--10607 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2095] [2096] [2097] [2098] Underfull \hbox (badness 10000) in paragraph at lines 10824--10828 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 10855--10861 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2099] [2100] Underfull \hbox (badness 2096) in paragraph at lines 10973--10976 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10977--10980 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [2101] Underfull \hbox (badness 1009) in paragraph at lines 11049--11060 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2102] [2103] [2104] [2105] [2106] Underfull \hbox (badness 3780) in paragraph at lines 11355--11359 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 11374--11377 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 2818) in paragraph at lines 11746--11751 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 11755--11758 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2113] [2114] [2115] [2116] [2117] Underfull \hbox (badness 10000) in paragraph at lines 12018--12020 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2118] [2119] Underfull \hbox (badness 1057) in paragraph at lines 12175--12182 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, [2120] [2121] [2122] [2123] Underfull \hbox (badness 6510) in paragraph at lines 12434--12438 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 12441--12444 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 12441--12444 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Underfull \hbox (badness 10000) in paragraph at lines 12983--12985 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 12986--12988 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2132] Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 1297) in paragraph at lines 13016--13021 \T1/zi4/m/sl/10 available.packages(contriburl = contriburl, method = method) \T 1/ptm/m/n/10 and hence by Underfull \hbox (badness 10000) in paragraph at lines 13045--13048 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2133] [2134] [2135] [2136] Overfull \hbox (23.85939pt too wide) in paragraph at lines 13287--13290 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2137] [2138] Underfull \hbox (badness 1454) in paragraph at lines 13364--13368 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2139] Underfull \hbox (badness 10000) in paragraph at lines 13434--13436 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2140] [2141] [2142]) (./fullrefman.ind [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190] [2191] Overfull \hbox (33.3567pt too wide) in paragraph at lines 8522--8524 []\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] Overfull \hbox (5.8567pt too wide) in paragraph at lines 11506--11508 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 11508--11510 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 11510--11512 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213]) (./fullrefman.aux) Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do es not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/ texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb> Output written on fullrefman.pdf (2244 pages, 5997087 bytes). Transcript written on fullrefman.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2017-04-15> Babel <3.15> and hyphenation patterns for 3 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.112, 2017/01/04 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 366. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 366. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx (./fullrefman.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./fullrefman.out) (./fullrefman.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29]) [30] (./base-pkg.tex Chapter 1. [1] [2] Underfull \hbox (badness 2547) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 296--300 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] Underfull \hbox (badness 3977) in paragraph at lines 385--388 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [7] [8] Underfull \hbox (badness 2556) in paragraph at lines 533--539 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1144--1147 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1901--1901 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2086--2088 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Underfull \vbox (badness 10000) has occurred while \output is active [50] [51] [52] [53] [54] [55] [56] Underfull \hbox (badness 10000) in paragraph at lines 3607--3609 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [57] [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 3848--3848 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 4823--4825 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Overfull \hbox (5.27168pt too wide) in paragraph at lines 5954--5954 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [94] [95] [96] Underfull \hbox (badness 2096) in paragraph at lines 6137--6150 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [97] [98] [99] Overfull \hbox (56.34871pt too wide) in paragraph at lines 6341--6343 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 6483--6486 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [102] [103] Underfull \hbox (badness 1442) in paragraph at lines 6646--6652 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6646--6652 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [104] Underfull \hbox (badness 3568) in paragraph at lines 6708--6715 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] [109] Underfull \hbox (badness 1077) in paragraph at lines 7019--7025 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7019--7025 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [110] [111] [112] [113] [114] Underfull \hbox (badness 2096) in paragraph at lines 7360--7364 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [115] [116] Underfull \hbox (badness 3000) in paragraph at lines 7453--7455 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7478--7481 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [117] [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 7733--7743 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [121] [122] Underfull \hbox (badness 4479) in paragraph at lines 7804--7814 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1394) in paragraph at lines 9477--9482 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [148] [149] [150] [151] [152] Underfull \hbox (badness 1194) in paragraph at lines 9822--9827 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9822--9827 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [153] [154] Underfull \hbox (badness 1735) in paragraph at lines 9960--9964 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [155] [156] [157] [158] [159] [160] [161] Underfull \hbox (badness 2150) in paragraph at lines 10375--10378 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 10389--10397 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2735) in paragraph at lines 10429--10436 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] Underfull \hbox (badness 4569) in paragraph at lines 11493--11497 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11493--11497 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [178] [179] [180] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 2698) in paragraph at lines 12070--12079 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 12070--12079 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [187] [188] [189] [190] [191] Underfull \vbox (badness 3803) has occurred while \output is active [192] [193] [194] [195] [196] Underfull \hbox (badness 6236) in paragraph at lines 12729--12732 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [197] [198] [199] [200] [201] [202] Underfull \hbox (badness 2253) in paragraph at lines 13141--13143 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [203] Underfull \hbox (badness 1565) in paragraph at lines 13212--13216 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [204] Underfull \hbox (badness 10000) in paragraph at lines 13256--13258 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [205] [206] Underfull \hbox (badness 1466) in paragraph at lines 13396--13399 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [207] [208] Underfull \hbox (badness 10000) in paragraph at lines 13514--13518 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13525--13528 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [209] [210] [211] [212] Underfull \hbox (badness 3965) in paragraph at lines 13788--13792 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] Underfull \hbox (badness 4429) in paragraph at lines 14550--14553 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [225] [226] Underfull \hbox (badness 10000) in paragraph at lines 14650--14652 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14656--14660 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 10000) in paragraph at lines 14695--14699 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14695--14699 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] Underfull \hbox (badness 2452) in paragraph at lines 15284--15288 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15284--15288 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [237] [238] [239] Underfull \hbox (badness 1092) in paragraph at lines 15457--15462 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [240] [241] [242] Underfull \hbox (badness 6741) in paragraph at lines 15705--15709 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [243] [244] [245] [246] [247] Underfull \hbox (badness 1867) in paragraph at lines 16011--16018 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [248] [249] [250] [251] Underfull \vbox (badness 10000) has occurred while \output is active [252] [253] [254] Underfull \hbox (badness 3679) in paragraph at lines 16421--16423 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 1478) in paragraph at lines 16976--16979 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [263] [264] [265] Underfull \hbox (badness 10000) in paragraph at lines 17229--17231 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [266] [267] [268] [269] [270] [271] [272] [273] [274] [275] Underfull \hbox (badness 1442) in paragraph at lines 17819--17821 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [276] Underfull \hbox (badness 2452) in paragraph at lines 17911--17927 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [277] [278] [279] [280] [281] [282] [283] Underfull \hbox (badness 1248) in paragraph at lines 18325--18328 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [284] [285] [286] [287] Underfull \hbox (badness 4739) in paragraph at lines 18583--18585 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 2469) in paragraph at lines 19600--19605 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and Underfull \hbox (badness 10000) in paragraph at lines 19614--19621 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / [305] Underfull \hbox (badness 10000) in paragraph at lines 19688--19692 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 19688--19692 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [306] [307] Underfull \hbox (badness 1509) in paragraph at lines 19823--19830 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1552) in paragraph at lines 19823--19830 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 19839--19844 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] [318] Underfull \hbox (badness 1264) in paragraph at lines 20572--20577 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [319] Underfull \hbox (badness 4441) in paragraph at lines 20601--20604 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] Underfull \hbox (badness 10000) in paragraph at lines 21327--21329 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] [346] Underfull \hbox (badness 1077) in paragraph at lines 22362--22368 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [347] [348] [349] Underfull \hbox (badness 1484) in paragraph at lines 22523--22531 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [350] [351] [352] [353] Underfull \hbox (badness 2790) in paragraph at lines 22794--22797 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 22794--22797 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [354] [355] [356] [357] Underfull \hbox (badness 1194) in paragraph at lines 23076--23079 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [358] [359] [360] [361] Underfull \hbox (badness 10000) in paragraph at lines 23282--23288 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 7379) in paragraph at lines 23282--23288 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 23292--23295 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] Underfull \hbox (badness 10000) in paragraph at lines 24242--24244 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [376] [377] [378] [379] Underfull \hbox (badness 1199) in paragraph at lines 24486--24492 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 24486--24492 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [380] [381] [382] [383] [384] [385] [386] [387] [388] Underfull \hbox (badness 1038) in paragraph at lines 25065--25073 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 25074--25077 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25093--25095 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [389] Underfull \hbox (badness 10000) in paragraph at lines 25202--25212 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 25213--25219 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [390] Underfull \hbox (badness 1968) in paragraph at lines 25249--25254 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 25259--25261 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [391] [392] [393] Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 25518--25524 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 25531--25534 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 25555--25557 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [394] Underfull \hbox (badness 10000) in paragraph at lines 25587--25592 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 25593--25604 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 25605--25608 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3713) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN ma-cOS build), Underfull \hbox (badness 7944) in paragraph at lines 25615--25627 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). Underfull \hbox (badness 2351) in paragraph at lines 25615--25627 \T1/ptm/m/n/10 Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/z i4/m/n/10 "mac.binary.mavericks"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.leo pard"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 25629--25636 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1874) in paragraph at lines 25629--25636 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [395] [396] [397] [398] [399] Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 25976--25980 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [400] [401] [402] [403] [404] Underfull \hbox (badness 1735) in paragraph at lines 26294--26298 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] Underfull \hbox (badness 2726) in paragraph at lines 26865--26868 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] Underfull \hbox (badness 1052) in paragraph at lines 27692--27697 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [428] [429] [430] [431] [432] Underfull \vbox (badness 10000) has occurred while \output is active [433] [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 1533) in paragraph at lines 28501--28504 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [440] [441] [442] Underfull \hbox (badness 1163) in paragraph at lines 28663--28674 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] Underfull \hbox (badness 10000) in paragraph at lines 30186--30190 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 30186--30190 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 30208--30210 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [467] [468] [469] [470] [471] [472] [473] [474] [475] Underfull \hbox (badness 1655) in paragraph at lines 30756--30758 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] Underfull \hbox (badness 10000) in paragraph at lines 31431--31435 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [487] [488] [489] [490] Underfull \hbox (badness 2302) in paragraph at lines 31671--31678 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 3333) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 31671--31678 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [491] [492] Underfull \hbox (badness 2261) in paragraph at lines 31827--31832 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 31854--31860 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [493] Underfull \hbox (badness 10000) in paragraph at lines 31930--31935 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] Underfull \vbox (badness 3803) has occurred while \output is active [533] [534] [535] [536] [537] [538] [539] [540] Underfull \hbox (badness 1072) in paragraph at lines 34968--34972 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 34973--34977 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 35001--35007 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [541] Underfull \hbox (badness 3343) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 35013--35020 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [542] [543] [544] [545] Underfull \hbox (badness 10000) in paragraph at lines 35311--35317 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1264) in paragraph at lines 35311--35317 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] Underfull \hbox (badness 3333) in paragraph at lines 37155--37160 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [576] [577] [578] [579] [580] [581] Underfull \vbox (badness 10000) has occurred while \output is active [582] [583] [584] [585] Underfull \hbox (badness 1472) in paragraph at lines 37778--37781 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] Underfull \vbox (badness 3803) has occurred while \output is active [599] Underfull \hbox (badness 10000) in paragraph at lines 38643--38647 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., [600] [601] [602] [603] Underfull \hbox (badness 10000) in paragraph at lines 38891--38894 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [604] [605] Underfull \hbox (badness 10000) in paragraph at lines 39009--39013 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [606] Underfull \hbox (badness 10000) in paragraph at lines 39071--39075 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [607] [608] [609] [610] [611] [612] [613] [614] Underfull \hbox (badness 4013) in paragraph at lines 39584--39586 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / www . twinsun . com / tz / tz-[]link . [615] [616] [617] [618] [619] Underfull \vbox (badness 3803) has occurred while \output is active [620] [621] [622] [623] [624] [625] [626] [627] Underfull \hbox (badness 3460) in paragraph at lines 40424--40427 []\T1/ptm/m/n/10 a [][]con-nec-tion[][][], or a char-ac-ter string nam-ing the file to print to (via Underfull \hbox (badness 1990) in paragraph at lines 40431--40439 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 40431--40439 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [628] [629] [630] [631] Underfull \hbox (badness 10000) in paragraph at lines 40708--40711 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. [632] [633] [634] [635] Underfull \hbox (badness 1917) in paragraph at lines 40936--40943 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] Underfull \hbox (badness 3668) in paragraph at lines 41615--41617 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [647] Underfull \hbox (badness 2401) in paragraph at lines 41721--41725 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [648] [649] [650] Underfull \hbox (badness 2111) in paragraph at lines 41897--41902 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 7362) in paragraph at lines 41913--41918 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [651] [652] [653] [654] [655] [656] [657] [658] [659] Underfull \hbox (badness 5417) in paragraph at lines 42470--42474 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [660] Underfull \hbox (badness 10000) in paragraph at lines 42531--42535 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [661]) (./compiler-pkg.tex [662] Chapter 2. [663] [664] [665] [666]) (./datasets-pkg.tex Chapter 3. [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] Underfull \vbox (badness 1515) has occurred while \output is active [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] Underfull \hbox (badness 6658) in paragraph at lines 3954--3956 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h ttp : / / www . ltrr . arizona . edu / ~hallman / [734] Underfull \vbox (badness 10000) has occurred while \output is active [735] [736] [737] [738] Underfull \vbox (badness 10000) has occurred while \output is active [739] [740] [741] [742] [743] [744] Overfull \vbox (18.9959pt too high) has occurred while \output is active [745] [746] [747]) (./grDevices-pkg.tex [748] Chapter 4. [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] Underfull \hbox (badness 5175) in paragraph at lines 1069--1071 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [766] [767] [768] [769] Underfull \hbox (badness 1852) in paragraph at lines 1266--1269 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [770] [771] [772] Underfull \hbox (badness 1490) in paragraph at lines 1472--1477 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [773] [774] Underfull \hbox (badness 10000) in paragraph at lines 1595--1599 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [775] [776] [777] [778] Underfull \hbox (badness 1325) in paragraph at lines 1878--1888 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [779] [780] Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [781] [782] [783] Underfull \hbox (badness 6758) in paragraph at lines 2144--2147 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [784] [785] [786] [787] [788] [789] [790] [791] [792] Underfull \hbox (badness 10000) in paragraph at lines 2732--2733 [793] [794] [795] [796] [797] [798] [799] [800] Underfull \hbox (badness 10000) in paragraph at lines 3230--3235 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [801] [802] [803] [804] Underfull \hbox (badness 3302) in paragraph at lines 3489--3492 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3503--3505 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1067) in paragraph at lines 4326--4333 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [818] [819] Underfull \hbox (badness 3364) in paragraph at lines 4486--4488 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 https : / / partners . adobe . com / public / [820] Underfull \hbox (badness 1789) in paragraph at lines 4563--4565 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [821] Underfull \hbox (badness 1377) in paragraph at lines 4613--4618 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [822] Underfull \hbox (badness 2671) in paragraph at lines 4640--4648 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4689--4696 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4697--4706 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4707--4709 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [823] [824] Underfull \hbox (badness 1057) in paragraph at lines 4818--4823 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and [825] Underfull \hbox (badness 7344) in paragraph at lines 4878--4880 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [826] [827] Underfull \hbox (badness 2035) in paragraph at lines 5002--5011 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5002--5011 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [828] Underfull \hbox (badness 10000) in paragraph at lines 5070--5077 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5070--5077 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [829] [830] [831] Underfull \hbox (badness 1546) in paragraph at lines 5212--5220 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [832] Underfull \hbox (badness 1648) in paragraph at lines 5289--5293 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [833] [834] [835] [836] [837] [838] [839] Underfull \hbox (badness 10000) in paragraph at lines 5741--5744 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [840] [841] [842] [843] [844] [845] Underfull \hbox (badness 1189) in paragraph at lines 6138--6140 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [846] [847] Underfull \hbox (badness 10000) in paragraph at lines 6236--6238 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [848] [849] [850] [851] Underfull \hbox (badness 3780) in paragraph at lines 6527--6533 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [852] [853] [854] Underfull \hbox (badness 2680) in paragraph at lines 6728--6730 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [855] [856] [857]) (./graphics-pkg.tex [858] Chapter 5. [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [870] [871] [872] [873] Underfull \vbox (badness 3803) has occurred while \output is active [874] [875] [876] [877] [878] [879] Underfull \hbox (badness 4634) in paragraph at lines 1255--1258 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 1009) in paragraph at lines 2289--2296 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] Underfull \vbox (badness 10000) has occurred while \output is active [919] [920] [921] [922] Underfull \hbox (badness 1867) in paragraph at lines 3931--3935 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [923] [924] [925] [926] [927] [928] [929] [930] Underfull \hbox (badness 1924) in paragraph at lines 4378--4383 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain Underfull \hbox (badness 2529) in paragraph at lines 4409--4412 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [931] [932] [933] [934] [935] Underfull \hbox (badness 10000) in paragraph at lines 4759--4765 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4759--4765 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [936] [937] Underfull \hbox (badness 10000) in paragraph at lines 4890--4893 [938 >/library/graphics/help/figures/mai.pdf>] Underfull \hbox (badness 10000) in paragraph at lines 4951--4953 Underfull \vbox (badness 10000) has occurred while \output is active [939] [940 >/library/graphics/help/figures/oma.pdf>] [941] Underfull \hbox (badness 10000) in paragraph at lines 5141--5143 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [942] Underfull \vbox (badness 3803) has occurred while \output is active [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6612--6613 [][] [965] [966 >/library/graphics/help/figures/pch .pdf>] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] Underfull \hbox (badness 1048) in paragraph at lines 7321--7326 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [977] [978] Underfull \hbox (badness 1102) in paragraph at lines 7437--7440 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] Underfull \hbox (badness 1043) in paragraph at lines 8272--8276 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly en-larged) usual plot-ting sym-bol (\T1/zi4/m/n/10 pch\T1/ptm/m/n/10 ) is drawn . For [993] [994] [995] [996] [997] [998] [999] Underfull \hbox (badness 10000) in paragraph at lines 8675--8677 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8677--8679 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [1000]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.8757 \HeaderA{units}{Graphical Units}{units} [1001] [1002] [1003] [1004]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [1005] [1006] [1007] [1008] [1009] [1010] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 4279) in paragraph at lines 970--979 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] Underfull \vbox (badness 3803) has occurred while \output is active [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] Underfull \hbox (badness 1067) in paragraph at lines 4340--4343 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1078] [1079] [1080] [1081] Underfull \hbox (badness 7256) in paragraph at lines 4585--4587 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] Underfull \hbox (badness 10000) in paragraph at lines 5862--5868 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] Underfull \hbox (badness 7649) in paragraph at lines 6341--6344 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1112] [1113] [1114] [1115]) (./methods-pkg.tex [1116] Chapter 7. [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \vbox (badness 3803) has occurred while \output is active [1125] Underfull \vbox (badness 10000) has occurred while \output is active [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] Underfull \hbox (badness 2237) in paragraph at lines 1386--1388 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] Underfull \hbox (badness 1077) in paragraph at lines 1933--1940 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests [1144] Underfull \hbox (badness 10000) in paragraph at lines 1982--1987 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1982--1987 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1145] [1146] [1147] Underfull \hbox (badness 1242) in paragraph at lines 2215--2220 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1148] [1149] [1150] [1151] [1152] Underfull \hbox (badness 10000) in paragraph at lines 2575--2578 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1153] [1154] Underfull \hbox (badness 1132) in paragraph at lines 2715--2719 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1155] Underfull \hbox (badness 1033) in paragraph at lines 2747--2752 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 1102) in paragraph at lines 3304--3306 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1163] [1164] [1165] [1166] [1167] [1168] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1169] Overfull \hbox (123.02902pt too wide) in paragraph at lines 3765--3766 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longitude = "numeric", altitude = "numeric")) Underfull \hbox (badness 10000) in paragraph at lines 3765--3766 [1170] Overfull \hbox (16.41006pt too wide) in paragraph at lines 3849--3850 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = "numeric") [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 1436) in paragraph at lines 4446--4449 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4475--4481 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4475--4481 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1181] Underfull \hbox (badness 1092) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 4534--4541 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] Underfull \vbox (badness 10000) has occurred while \output is active [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 5358--5359 []\T1/zi4/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1193] Underfull \hbox (badness 4036) in paragraph at lines 5440--5443 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1194] Underfull \hbox (badness 3803) in paragraph at lines 5515--5517 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1195] [1196] [1197] [1198] Underfull \hbox (badness 1087) in paragraph at lines 5747--5752 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] Underfull \hbox (badness 1675) in paragraph at lines 6454--6460 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1207] [1208] [1209] [1210] Underfull \vbox (badness 10000) has occurred while \output is active [1211] [1212] [1213] [1214]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6976 \aliasA{S4}{S3Part}{S4} [1215] [1216] [1217]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7232 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7234 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7235 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7237 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7238 \aliasA{Summary}{S4groupGeneric}{Summary} [1218] Underfull \hbox (badness 2050) in paragraph at lines 7299--7303 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1219] [1220] [1221] Underfull \hbox (badness 1286) in paragraph at lines 7487--7489 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] Underfull \vbox (badness 10000) has occurred while \output is active [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] Underfull \hbox (badness 1852) in paragraph at lines 10567--10571 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1264] [1265] [1266] [1267]) (./parallel-pkg.tex [1268] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 3386) in paragraph at lines 1268--1271 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1289] [1290] [1291]) (./splines-pkg.tex [1292] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307]) (./stats-pkg.tex [1308] Chapter 10. [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1412) in paragraph at lines 848--850 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] Underfull \hbox (badness 2503) in paragraph at lines 1329--1332 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1330] [1331] [1332] Underfull \hbox (badness 10000) in paragraph at lines 1508--1512 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] Underfull \hbox (badness 3965) in paragraph at lines 2168--2170 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1344] [1345] [1346] [1347] [1348] Underfull \hbox (badness 3965) in paragraph at lines 2510--2512 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] Underfull \hbox (badness 2726) in paragraph at lines 3224--3240 \T1/ptm/m/n/10 We have slightly tweaked the orig-i-nal ``TOMS 708'' al-go-rithm , and en-hanced for [1360] [1361] Underfull \hbox (badness 2503) in paragraph at lines 3354--3357 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] Underfull \hbox (badness 3989) in paragraph at lines 4582--4589 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] Underfull \hbox (badness 2556) in paragraph at lines 5193--5196 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5210--5212 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1392] [1393] [1394] [1395] Underfull \hbox (badness 1142) in paragraph at lines 5451--5463 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1396] [1397] [1398] Underfull \hbox (badness 2503) in paragraph at lines 5599--5603 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] Underfull \hbox (badness 8132) in paragraph at lines 6102--6107 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1407] [1408] [1409] [1410] [1411] Underfull \hbox (badness 7081) in paragraph at lines 6380--6383 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6384--6386 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1412] [1413] [1414] [1415] [1416] Underfull \vbox (badness 3803) has occurred while \output is active [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] Underfull \hbox (badness 10000) in paragraph at lines 7225--7228 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] Underfull \hbox (badness 2626) in paragraph at lines 8860--8863 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1452] Underfull \hbox (badness 2503) in paragraph at lines 8960--8964 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1453] [1454] [1455] [1456] [1457] [1458] Overfull \hbox (3.53955pt too wide) in paragraph at lines 9309--9311 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 4518) in paragraph at lines 10235--10240 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1473] [1474] [1475] [1476] [1477] Underfull \hbox (badness 2142) in paragraph at lines 10577--10580 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10596--10599 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1478] Underfull \hbox (badness 1708) in paragraph at lines 10658--10662 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 1694) in paragraph at lines 11054--11057 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1485] Underfull \hbox (badness 1867) in paragraph at lines 11073--11082 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1486] [1487] [1488] [1489] [1490] Underfull \hbox (badness 10000) in paragraph at lines 11380--11383 []\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds [][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq uiv-a-lent of [1491] [1492]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.hat}) has been already used, duplicate ignored \relax l.11534 \aliasA{hat}{influence.measures}{hat} [1493] [1494] Underfull \hbox (badness 1484) in paragraph at lines 11665--11667 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 4441) in paragraph at lines 12248--12250 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12255--12257 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1505] [1506] [1507] [1508] [1509] [1510] Underfull \hbox (badness 2894) in paragraph at lines 12589--12593 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] Underfull \hbox (badness 4518) in paragraph at lines 13284--13289 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] Underfull \hbox (badness 4518) in paragraph at lines 13931--13936 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1532] [1533] [1534] Underfull \hbox (badness 10000) in paragraph at lines 14069--14073 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 14076--14078 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] Underfull \hbox (badness 2503) in paragraph at lines 15138--15142 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] Underfull \hbox (badness 1584) in paragraph at lines 15650--15656 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] Underfull \hbox (badness 2359) in paragraph at lines 17287--17289 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1587] Underfull \vbox (badness 3803) has occurred while \output is active [1588] Underfull \vbox (badness 10000) has occurred while \output is active [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 1377) in paragraph at lines 18198--18203 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18203--18206 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on [1602] Underfull \hbox (badness 1454) in paragraph at lines 18216--18220 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18224--18228 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] Underfull \hbox (badness 1337) in paragraph at lines 18840--18843 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 3049) in paragraph at lines 19326--19330 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1622] [1623] [1624] [1625] Underfull \hbox (badness 5563) in paragraph at lines 19576--19578 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19579--19582 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 2503) in paragraph at lines 19954--19957 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1632] Underfull \hbox (badness 10000) in paragraph at lines 19981--19983 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 10000) in paragraph at lines 21029--21035 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] Underfull \hbox (badness 1337) in paragraph at lines 22367--22373 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Overfull \hbox (27.74408pt too wide) in paragraph at lines 22912--22912 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1681] [1682] [1683] [1684] [1685] Underfull \hbox (badness 10000) in paragraph at lines 23162--23165 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Underfull \hbox (badness 10000) in paragraph at lines 23747--23750 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1695] Underfull \hbox (badness 3690) in paragraph at lines 23798--23802 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] Underfull \hbox (badness 3439) in paragraph at lines 24268--24274 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1705] [1706] [1707] Underfull \hbox (badness 1867) in paragraph at lines 24465--24467 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallback = use.fallback) \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 PP <- sum(!is.na([][]coef[][][](object))) \T1/ptm/m/n/10 -- wher e in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was Underfull \hbox (badness 1132) in paragraph at lines 24478--24482 \T1/zi4/m/n/10 length(coef(object)) \T1/ptm/m/n/10 which is too large in case o f un-de-ter-mined co-ef-fi-cients, e.g., for [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 10000) in paragraph at lines 24950--24955 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 3514) in paragraph at lines 25992--25997 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1733] Underfull \hbox (badness 3514) in paragraph at lines 26054--26059 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1734] Underfull \hbox (badness 3514) in paragraph at lines 26111--26116 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1735] Underfull \hbox (badness 3514) in paragraph at lines 26172--26178 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1736] [1737] [1738] [1739] Underfull \hbox (badness 3514) in paragraph at lines 26385--26390 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1740] Underfull \hbox (badness 3514) in paragraph at lines 26441--26446 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1741] Underfull \hbox (badness 3514) in paragraph at lines 26499--26504 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1742] Underfull \hbox (badness 3514) in paragraph at lines 26554--26559 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Underfull \hbox (badness 6691) in paragraph at lines 26623--26628 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 27147--27150 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 5431) in paragraph at lines 27753--27755 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1763] [1764] [1765] Underfull \hbox (badness 5431) in paragraph at lines 27963--27966 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1766] [1767] [1768] [1769] [1770] [1771] Underfull \hbox (badness 1337) in paragraph at lines 28277--28281 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1772] [1773] Underfull \hbox (badness 10000) in paragraph at lines 28394--28397 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1774] [1775] Underfull \hbox (badness 1616) in paragraph at lines 28577--28580 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] Underfull \hbox (badness 10000) in paragraph at lines 29703--29707 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1795] [1796] [1797] Underfull \vbox (badness 10000) has occurred while \output is active [1798] [1799] [1800] Underfull \hbox (badness 1337) in paragraph at lines 30067--30071 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 30551--30555 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] Underfull \hbox (badness 2142) in paragraph at lines 30628--30633 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 x \T1/ptm/m/n/10 (and \T1/zi4/m/n/10 y \T1 /ptm/m/n/10 if ap-pli-ca-ble) are valid, the func-tion now al-ways re-turns, al so in the [1810] Underfull \hbox (badness 5161) in paragraph at lines 30650--30652 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 10000) in paragraph at lines 31032--31037 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1817] [1818]) (./stats4-pkg.tex Chapter 11. [1819] [1820] [1821] [1822] [1823] [1824]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1825] [1826] [1827] [1828]) (./tcltk-pkg.tex Chapter 12. [1829] [1830] [1831] [1832] [1833] [1834] [1835] Underfull \vbox (badness 10000) has occurred while \output is active [1836] Underfull \vbox (badness 10000) has occurred while \output is active [1837] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] [1848] Underfull \hbox (badness 3019) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the ma-cOS GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 ( whose [1849]) (./tools-pkg.tex [1850] Chapter 13. [1851] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1852] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1853] [1854] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1855] [1856] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] Underfull \hbox (badness 1635) in paragraph at lines 1053--1055 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1868] Underfull \hbox (badness 4441) in paragraph at lines 1131--1141 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1869] Underfull \hbox (badness 1014) in paragraph at lines 1153--1155 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1159--1161 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1196--1199 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1196--1199 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1870] [1871] [1872] Underfull \hbox (badness 10000) in paragraph at lines 1365--1367 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1873] [1874] [1875] Underfull \hbox (badness 2293) in paragraph at lines 1539--1541 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1876] [1877] Underfull \hbox (badness 7981) in paragraph at lines 1677--1682 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1684--1686 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1878] [1879] [1880] [1881]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1881 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1882] [1883] [1884] [1885] [1886] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2183--2183 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1887] [1888] [1889] Underfull \hbox (badness 7981) in paragraph at lines 2352--2358 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1890] [1891] [1892] [1893] [1894] [1895] [1896] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2817. [1897] [1898] [1899] [1900] Underfull \hbox (badness 1424) in paragraph at lines 3099--3101 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] Underfull \hbox (badness 10000) in paragraph at lines 3799--3801 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1913] [1914] Underfull \hbox (badness 10000) in paragraph at lines 3938--3941 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1915] [1916] Underfull \hbox (badness 1137) in paragraph at lines 4036--4038 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1917] [1918] [1919] Underfull \hbox (badness 1838) in paragraph at lines 4245--4251 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4245--4251 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1920] Underfull \hbox (badness 5726) in paragraph at lines 4325--4330 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 4325--4330 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1921] [1922] [1923] Underfull \hbox (badness 2197) in paragraph at lines 4474--4484 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 2229) in paragraph at lines 4474--4484 \T1/ptm/m/n/10 fields will al-ways be in-cluded, plus the file name in field \T 1/zi4/m/sl/10 "File" \T1/ptm/m/n/10 if [1924] Underfull \hbox (badness 1571) in paragraph at lines 4537--4541 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1925] [1926] [1927]) (./utils-pkg.tex [1928] Chapter 14. [1929] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1930] [1931] [1932] [1933] [1934] [1935] [1936] Underfull \hbox (badness 10000) in paragraph at lines 546--552 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 546--552 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1937] [1938] Underfull \hbox (badness 5847) in paragraph at lines 660--666 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 660--666 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1939] Underfull \hbox (badness 3861) in paragraph at lines 728--733 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1940] [1941] [1942] Underfull \hbox (badness 1430) in paragraph at lines 893--900 \T1/ptm/m/n/10 in-di-cat-ing that the bib-tex code should be given in ad-di-tio n to the for- Underfull \hbox (badness 1931) in paragraph at lines 893--900 \T1/ptm/m/n/10 mat-ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not mo re than $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 1038) in paragraph at lines 893--900 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x", 1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 893--900 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1943] [1944] [1945] [1946] [1947] [1948] [1949] Underfull \hbox (badness 1371) in paragraph at lines 1375--1377 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 2057) in paragraph at lines 1863--1865 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1958] Underfull \hbox (badness 10000) in paragraph at lines 1958--1960 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1959] [1960] Underfull \hbox (badness 5189) in paragraph at lines 2060--2062 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1961] Underfull \vbox (badness 3803) has occurred while \output is active [1962] [1963] [1964] Underfull \hbox (badness 1661) in paragraph at lines 2278--2285 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1748) in paragraph at lines 2294--2297 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 10000) in paragraph at lines 2703--2707 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing Overfull \hbox (59.4187pt too wide) in paragraph at lines 2708--2711 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](..., header = TRUE, sep = ";", as.is=FALSE)\T1/ptm/m/n/10 , [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] Underfull \hbox (badness 1430) in paragraph at lines 3385--3393 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3434--3440 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4274 ...mat Unordered and Ordered Lists}{format} [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] [2011] Underfull \hbox (badness 1371) in paragraph at lines 5271--5273 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [2012] Underfull \hbox (badness 1502) in paragraph at lines 5360--5365 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5360--5365 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2013] [2014] [2015] Underfull \hbox (badness 10000) in paragraph at lines 5533--5542 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2016] Underfull \hbox (badness 2150) in paragraph at lines 5596--5599 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2017] [2018] Underfull \hbox (badness 3118) in paragraph at lines 5733--5735 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5766--5770 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [2019] [2020] Underfull \hbox (badness 1325) in paragraph at lines 5874--5878 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [2021] Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5957--5960 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [2022] Underfull \hbox (badness 3219) in paragraph at lines 6030--6037 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6030--6037 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [2023] Underfull \hbox (badness 10000) in paragraph at lines 6110--6115 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] [2045] [2046] [2047] Underfull \hbox (badness 10000) in paragraph at lines 7527--7529 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7532--7537 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 1789) in paragraph at lines 8087--8089 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] Underfull \hbox (badness 1097) in paragraph at lines 8916--8919 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2069] Underfull \hbox (badness 3000) in paragraph at lines 9052--9057 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 2134) in paragraph at lines 9635--9640 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [2079] [2080] [2081] [2082] [2083] [2084] [2085] Underfull \hbox (badness 5077) in paragraph at lines 10060--10064 []\T1/zi4/m/sl/10 as.roman \T1/ptm/m/n/10 cre-ates ob-jects of class \T1/zi4/m/ sl/10 "roman" \T1/ptm/m/n/10 which are in-ter-nally rep-re-sented as in-te- Underfull \hbox (badness 2269) in paragraph at lines 10060--10064 \T1/ptm/m/n/10 gers, and have suit-able meth-ods for print-ing, for-mat-ting, s ub-set-ting, co-er-cion, etc, see Underfull \hbox (badness 2469) in paragraph at lines 10072--10076 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 10072--10076 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2086] [2087] [2088] [2089] [2090] Overfull \hbox (18.77168pt too wide) in paragraph at lines 10366--10366 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2091] Underfull \hbox (badness 10000) in paragraph at lines 10429--10431 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [2092] [2093] [2094] Underfull \hbox (badness 2150) in paragraph at lines 10605--10607 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2095] [2096] [2097] [2098] Underfull \hbox (badness 10000) in paragraph at lines 10824--10828 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 10855--10861 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2099] [2100] Underfull \hbox (badness 2096) in paragraph at lines 10973--10976 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10977--10980 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [2101] Underfull \hbox (badness 1009) in paragraph at lines 11049--11060 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2102] [2103] [2104] [2105] [2106] Underfull \hbox (badness 3780) in paragraph at lines 11355--11359 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 11374--11377 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 2818) in paragraph at lines 11746--11751 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 11755--11758 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2113] [2114] [2115] [2116] [2117] Underfull \hbox (badness 10000) in paragraph at lines 12018--12020 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2118] [2119] Underfull \hbox (badness 1057) in paragraph at lines 12175--12182 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, [2120] [2121] [2122] [2123] Underfull \hbox (badness 6510) in paragraph at lines 12434--12438 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 12441--12444 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 12441--12444 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Underfull \hbox (badness 10000) in paragraph at lines 12983--12985 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 12986--12988 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2132] Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 13016--13021 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 1297) in paragraph at lines 13016--13021 \T1/zi4/m/sl/10 available.packages(contriburl = contriburl, method = method) \T 1/ptm/m/n/10 and hence by Underfull \hbox (badness 10000) in paragraph at lines 13045--13048 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2133] [2134] [2135] [2136] Overfull \hbox (23.85939pt too wide) in paragraph at lines 13287--13290 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2137] [2138] Underfull \hbox (badness 1454) in paragraph at lines 13364--13368 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2139] Underfull \hbox (badness 10000) in paragraph at lines 13434--13436 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2140] [2141] [2142]) (./fullrefman.ind [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190] [2191] Overfull \hbox (33.3567pt too wide) in paragraph at lines 8522--8524 []\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] Overfull \hbox (5.8567pt too wide) in paragraph at lines 11506--11508 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 11508--11510 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 11510--11512 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213]) (./fullrefman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do es not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Surv} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/ texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb> Output written on fullrefman.pdf (2244 pages, 5996646 bytes). Transcript written on fullrefman.log. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[1]: Leaving directory '/<>' /usr/bin/make -k vignettes make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' make[4]: Entering directory '/<>/src/scripts' make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[4]: Entering directory '/<>/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/<>/src/appl' make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[4]: Entering directory '/<>/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/lib/libR.so is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/bin/exec/R is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' make[5]: Entering directory '/<>/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[5]: Entering directory '/<>/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' /<>/modules/R_X11.so is unchanged /<>/modules/R_de.so is unchanged make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' make[4]: Entering directory '/<>/src/library/profile' building system startup profile make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' all.R is unchanged make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' make[5]: Entering directory '/<>/src/library/tools' all.R is unchanged make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' make[7]: Entering directory '/<>/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' make[5]: Entering directory '/<>/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' make[5]: Entering directory '/<>/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' make[7]: Entering directory '/<>/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/<>/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' make[7]: Entering directory '/<>/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' make[5]: Entering directory '/<>/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' make[7]: Entering directory '/<>/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' make[5]: Entering directory '/<>/src/library/stats' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' make[7]: Entering directory '/<>/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' make[5]: Entering directory '/<>/src/library/methods' all.R is unchanged make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' make[7]: Entering directory '/<>/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' make[5]: Entering directory '/<>/src/library/grid' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' make[7]: Entering directory '/<>/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' make[5]: Entering directory '/<>/src/library/splines' all.R is unchanged make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' make[7]: Entering directory '/<>/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' make[5]: Entering directory '/<>/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' make[6]: Entering directory '/<>/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' make[5]: Entering directory '/<>/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' make[7]: Entering directory '/<>/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/manual' make[4]: Entering directory '/<>/doc/html' make[4]: Leaving directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' installing parsed Rd make[4]: Entering directory '/<>/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' building/updating package metadata ... make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' writing package indices make[4]: Entering directory '/<>/src/library' make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src/library' make[2]: Entering directory '/<>/src/library/Recommended' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/src/library/Recommended' make[2]: Entering directory '/<>/src/library' building/updating vignettes for package 'grid' ... processing 'grid.Rnw' building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... make[2]: Leaving directory '/<>/src/library' make[1]: Leaving directory '/<>' touch make-indep-stamp *** check *** xvfb-run make check-all make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[4]: Entering directory '/<>/tests/Examples' Testing examples for package ‘base’ Testing examples for package ‘tools’ comparing ‘tools-Ex.Rout’ to ‘tools-Ex.Rout.save’ ... OK Testing examples for package ‘utils’ Testing examples for package ‘grDevices’ comparing ‘grDevices-Ex.Rout’ to ‘grDevices-Ex.Rout.save’ ... OK Testing examples for package ‘graphics’ comparing ‘graphics-Ex.Rout’ to ‘graphics-Ex.Rout.save’ ... OK Testing examples for package ‘stats’ comparing ‘stats-Ex.Rout’ to ‘stats-Ex.Rout.save’ ... OK Testing examples for package ‘datasets’ comparing ‘datasets-Ex.Rout’ to ‘datasets-Ex.Rout.save’ ... OK Testing examples for package ‘methods’ Testing examples for package ‘grid’ comparing ‘grid-Ex.Rout’ to ‘grid-Ex.Rout.save’ ... OK Testing examples for package ‘splines’ comparing ‘splines-Ex.Rout’ to ‘splines-Ex.Rout.save’ ... OK Testing examples for package ‘stats4’ comparing ‘stats4-Ex.Rout’ to ‘stats4-Ex.Rout.save’ ... OK Testing examples for package ‘tcltk’ Testing examples for package ‘compiler’ Testing examples for package ‘parallel’ make[4]: Leaving directory '/<>/tests/Examples' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running strict specific tests make[4]: Entering directory '/<>/tests' running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK running code in 'simple-true.R' ... OK comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK running code in 'arith-true.R' ... OK comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK running code in 'arith.R' ... OK comparing 'arith.Rout' to './arith.Rout.save' ... OK running code in 'lm-tests.R' ... OK comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK running code in 'ok-errors.R' ... OK comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK running code in 'method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK running code in 'any-all.R' ... OK comparing 'any-all.Rout' to './any-all.Rout.save' ... OK running code in 'd-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK make[4]: Leaving directory '/<>/tests' running sloppy specific tests make[4]: Entering directory '/<>/tests' running code in 'complex.R' ... OK comparing 'complex.Rout' to './complex.Rout.save' ... OK running code in 'print-tests.R' ... OK comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK running code in 'lapack.R' ... OK comparing 'lapack.Rout' to './lapack.Rout.save' ... OK running code in 'datasets.R' ... OK comparing 'datasets.Rout' to './datasets.Rout.save' ... OK running code in 'datetime.R' ... OK comparing 'datetime.Rout' to './datetime.Rout.save' ...32c32 < [1] "2040-07-01 12:00:00 GMT" --- > [1] "2040-07-01 12:00:00 BST" 34c34 < [1] 2224756800 --- > [1] 2224753200 46c46 < [1] "2040-07-01 12:00:00 EST" --- > [1] "2040-07-01 12:00:00 EDT" 48c48 < [1] 2224774800 --- > [1] 2224771200 OK running code in 'iec60559.R' ... OK comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running regression tests ... make[4]: Entering directory '/<>/tests' running code in 'array-subset.R' ... OK running code in 'reg-tests-1a.R' ... OK running code in 'reg-tests-1b.R' ... OK running code in 'reg-tests-1c.R' ... OK running code in 'reg-tests-1d.R' ... OK running code in 'reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK running code in 'reg-examples1.R' ... OK running code in 'reg-examples2.R' ... OK running code in 'reg-packages.R' ... OK running code in 'p-qbeta-strict-tst.R' ... OK running code in 'r-strict-tst.R' ... OK running code in 'reg-IO.R' ... OK comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK running code in 'reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK running code in 'reg-plot.R' ... OK comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK running code in 'reg-S4-examples.R' ... OK running code in 'reg-BLAS.R' ... OK make[4]: Leaving directory '/<>/tests' make[4]: Entering directory '/<>/tests' running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in 'reg-plot-latin1.R' ... OK comparing 'reg-plot-latin1.pdf' to './reg-plot-latin1.pdf.save' ... OK running code in 'reg-S4.R' ... OK comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ...650,652c650 < Warning message: < In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : < there is no package called 'Matrix' --- > [ ] : .M.sub.i.logical() maybe inefficient OK make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running tests of Internet functions make[4]: Entering directory '/<>/tests' running code in 'internet.R' ... OK comparing 'internet.Rout' to './internet.Rout.save' ...8,10c8,247 < Warning message: < In nsl("cran.r-project.org") : < nsl() was unable to resolve host 'cran.r-project.org' --- > > > > # test do_download (and "record" #{packages}): > > ap <- available.packages(contrib.url("http://cran.r-project.org")) > > ## IGNORE_RDIFF_END > > > > # test url connections on http > > zz <- url("http://cran.r-project.org/") > > readLines(zz) > [1] "" > [2] "" > [3] "" > [4] "The Comprehensive R Archive Network" > [5] "" > [6] "" > [7] "" > [8] "" > [9] "" > [10] "" > [11] "" > [12] "" > [13] "" > [14] "" > [15] "" > [16] "" > [17] "" > [18] "<h1>The Comprehensive R Archive Network</h1>" > [19] "" > [20] "Your browser seems not to support frames," > [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN." > [22] "" > [23] "" > > close(zz) > > > > # and via read.table, test http and ftp. > > > > read.table("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > read.table("ftp://ftp.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > OK make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running tests of date-time printing expect platform-specific differences make[4]: Entering directory '/<>/tests' running code in 'datetime2.R' ... OK comparing 'datetime2.Rout' to './datetime2.Rout.save' ... OK make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running tests of documentation examples make[4]: Entering directory '/<>/tests' running code in 'R-intro.R' ... OK comparing 'R-intro.Rout' to './R-intro.Rout.save' ... OK make[4]: Leaving directory '/<>/tests' make[4]: Entering directory '/<>/tests' gcc -std=gnu99 -I/<>/include -DNDEBUG -fPIC -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R-exts.c -o R-exts.o gcc -std=gnu99 -shared -L/<>/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R-exts.so R-exts.o -L/<>/lib -lR make[4]: Leaving directory '/<>/tests' make[4]: Entering directory '/<>/tests' running code in 'R-exts.R' ... OK make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running tests of consistency of as/is.* make[4]: Entering directory '/<>/tests' creating 'isas-tests.R' running code in 'isas-tests.R' ... OK comparing 'isas-tests.Rout' to './isas-tests.Rout.save' ... OK rm isas-tests.R make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running tests of random deviate generation make[4]: Entering directory '/<>/tests' running code in 'p-r-random-tests.R' ... OK comparing 'p-r-random-tests.Rout' to './p-r-random-tests.Rout.save' ... OK make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running demos from base and stats make[4]: Entering directory '/<>/tests' running code in 'demos.R' ... OK comparing 'demos.Rout' to './demos.Rout.save' ... OK running code in 'demos2.R' ... OK make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running tests of primitives make[4]: Entering directory '/<>/tests' running code in 'primitives.R' ... OK make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running regexp regression tests make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running more Internet and socket tests make[4]: Entering directory '/<>/tests' running code in 'internet2.R' ... OK running code in 'libcurl.R' ... OK make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>/tests' running tests of CRAN tools (can be slow unless mirror is local) make[4]: Entering directory '/<>/tests' running code in 'CRANtools.R' ...Makefile.common:98: recipe for target 'CRANtools.Rout' failed make[4]: *** [CRANtools.Rout] Error 1 make[4]: Leaving directory '/<>/tests' Makefile.common:261: recipe for target 'test-CRANtools' failed make[3]: *** [test-CRANtools] Error 2 make[3]: Leaving directory '/<>/tests' Makefile.common:174: recipe for target 'test-all-devel' failed make[2]: *** [test-all-devel] Error 1 make[2]: Leaving directory '/<>/tests' Makefile:239: recipe for target 'check-all' failed make[1]: *** [check-all] Error 2 make[1]: Leaving directory '/<>' debian/rules:375: recipe for target 'check-stamp' failed make: [check-stamp] Error 2 (ignored) touch check-stamp fakeroot debian/rules binary-arch *** install-arch *** dh_testdir dh_testroot dh_prep -a dh_installdirs -A /<>/debian/r-base-core /usr/bin/make DESTDIR=/<>/debian/r-base-core install make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' installing doc ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc mkdir -p -- /<>/debian/r-base-core/usr/share/man/man1 make[3]: Entering directory '/<>/doc/html' installing doc/html ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/html make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' installing doc/manual ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/manual mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/manual/images make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/etc installing etc ... make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' installing share ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/share mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/R mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/dictionaries mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/encodings mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/java mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/licenses mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/make mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/Rd mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/Rd/macros mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/sh mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/tex/latex make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/bin make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' mkdir -p -- /<>/debian/r-base-core/usr/share/R/include/R_ext make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/blas' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/blas' make[4]: Entering directory '/<>/src/extra/tre' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/tre' make[4]: Entering directory '/<>/src/extra/xdr' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/xdr' make[4]: Entering directory '/<>/src/extra/intl' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/intl' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c mkdir -p -- /<>/debian/r-base-core/usr/lib/pkgconfig make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/bin/exec make[4]: Entering directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/lib make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/modules make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/library installing packages ... building HTML index ... make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/tests' make[1]: Leaving directory '/<>' (cd src/unix; \ rm -vf Rscript /<>/debian/r-base-core/usr/bin/Rscript; \ /usr/bin/make CFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ CXXFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ FFLAGS="-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -D_REENTRANT" \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ RHOME=/usr/lib/R \ DESTDIR=/<>/debian/r-base-core \ install-Rscript ) removed 'Rscript' removed '/<>/debian/r-base-core/usr/bin/Rscript' make[1]: Entering directory '/<>/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c make[1]: Leaving directory '/<>/src/unix' #ls -ltr /<>/debian/r-base-core/usr/bin/ #strings src/unix/Rscript cp -vax src/unix/Rscript /<>/debian/r-base-core/usr/bin/ 'src/unix/Rscript' -> '/<>/debian/r-base-core/usr/bin/Rscript' #ls -ltr /<>/debian/r-base-core/usr/bin/ #strings /<>/debian/r-base-core/usr/bin/Rscript (cd src/nmath/standalone; \ /usr/bin/make DESTDIR=/<>/debian/r-base-core install ) make[1]: Entering directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/<>/src/include' /<>/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged make[1]: Leaving directory '/<>/src/nmath/standalone' chmod a+x /<>/debian/r-base-core/usr/share/R/share/sh/echo.sh rm -v /<>/debian/r-base-core/usr/lib/R/COPYING removed '/<>/debian/r-base-core/usr/lib/R/COPYING' (cd /<>/debian/r-base-core/usr/lib/R/; \ ln -s ../../share/common-licenses/GPL-2 COPYING) rm -v /<>/debian/r-base-core/usr/share/R/doc/COPYING removed '/<>/debian/r-base-core/usr/share/R/doc/COPYING' (cd /<>/debian/r-base-core/usr/share/R/doc; \ ln -s ../../../share/common-licenses/GPL-2 COPYING) (cd /<>/debian/r-base-core/usr/share/texmf/tex/latex && \ ln -s ../../../R/share/texmf R) dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html dh_movefiles --sourcedir=debian/r-base-core -pr-base-html make prefix=/<>/debian/r-base-core/usr \ rdocdir=/<>/debian/r-base-core/usr/share/R/doc \ install-pdf make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/doc/manual' installing R manuals in PDF format ... make[2]: Leaving directory '/<>/doc/manual' make[1]: Leaving directory '/<>' make prefix=/<>/debian/r-base-core/usr \ infodir=/<>/debian/r-base-core/usr/share/info install-info make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/doc/manual' mkdir -p -- /<>/debian/r-base-core/usr/share/info /usr/bin/install -c -m 644 "./dir" "/<>/debian/r-base-core/usr/share/info" installing R info pages ... updating '/<>/debian/r-base-core/usr/share/info/dir' ... you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually make[2]: Leaving directory '/<>/doc/manual' make[1]: Leaving directory '/<>' dh_movefiles --sourcedir=debian/r-base-core -pr-doc-pdf dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html touch install-indep-stamp gunzip -9v /<>/debian/r-base-core/usr/share/info/*.gz /<>/debian/r-base-core/usr/share/info/R-FAQ.info.gz: 67.0% -- replaced with /<>/debian/r-base-core/usr/share/info/R-FAQ.info /<>/debian/r-base-core/usr/share/info/R-admin.info.gz: 68.1% -- replaced with /<>/debian/r-base-core/usr/share/info/R-admin.info /<>/debian/r-base-core/usr/share/info/R-data.info.gz: 70.6% -- replaced with /<>/debian/r-base-core/usr/share/info/R-data.info /<>/debian/r-base-core/usr/share/info/R-exts.info-1.gz: 66.7% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-1 /<>/debian/r-base-core/usr/share/info/R-exts.info-2.gz: 69.9% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-2 /<>/debian/r-base-core/usr/share/info/R-exts.info-3.gz: 82.9% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-3 /<>/debian/r-base-core/usr/share/info/R-exts.info.gz: 69.6% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info /<>/debian/r-base-core/usr/share/info/R-intro.info.gz: 70.1% -- replaced with /<>/debian/r-base-core/usr/share/info/R-intro.info /<>/debian/r-base-core/usr/share/info/R-ints.info.gz: 67.7% -- replaced with /<>/debian/r-base-core/usr/share/info/R-ints.info /<>/debian/r-base-core/usr/share/info/R-lang.info.gz: 71.6% -- replaced with /<>/debian/r-base-core/usr/share/info/R-lang.info dh_movefiles --sourcedir=debian/r-base-core -pr-doc-info rm -vf /<>/debian/r-doc-info/usr/share/info/dir \ /<>/debian/r-doc-info/usr/share/info/dir.old removed '/<>/debian/r-doc-info/usr/share/info/dir' dh_installdirs -pr-mathlib usr/include usr/lib \ usr/share/lintian/overrides \ usr/lib/pkgconfig dh_movefiles --sourcedir=debian/r-base-core -pr-mathlib (cd /<>/debian/r-mathlib/usr/lib; \ ls -l ; \ mv -v libRmath.so libRmath.so.1.0.0; \ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 3128 -rw-rw-r-- 1 root root 2131726 Nov 30 23:08 libRmath.a -rwxrwxr-x 1 root root 1064232 Nov 30 23:08 libRmath.so drwxr-xr-x 2 root root 4096 Nov 30 23:08 pkgconfig 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' install -m 0644 src/include/Rmath.h \ /<>/debian/r-mathlib/usr/include install -m 0644 debian/Rprofile.site /<>/debian/r-base-core/etc/R install -m 0644 debian/Renviron.site /<>/debian/r-base-core/etc/R (cd /<>/debian/r-base-core/usr/lib/R/etc; \ cat /<>/debian/Renviron-R_LIBS.patch | patch --verbose; \ mv Makeconf repositories ldpaths ../../../../etc/R/; \ mv Renviron Renviron.ucf; \ ln -s /etc/R/Makeconf .; \ ln -s /etc/R/Renviron .; \ ln -s /etc/R/Renviron.site .; \ ln -s /etc/R/Rprofile.site .; \ ln -s /etc/R/ldpaths .; \ ln -s /etc/R/repositories . ) Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- Renviron.orig 2003-04-04 06:52:22.000000000 -0500 |+++ Renviron 2003-04-04 06:49:05.000000000 -0500 -------------------------- patching file Renviron Using Plan A... Hunk #1 succeeded at 43 with fuzz 2 (offset 10 lines). done dh_bash-completion # edd 12 Jan 2016 new location #install -m 0644 debian/R.bash-completion \ # debian/r-base-core/usr/share/bash-completion/completions/R (cd /<>/debian/r-base-core/usr/lib/; \ ln -sv R/lib/libR.so . ) './libR.so' -> 'R/lib/libR.so' (cd debian/icon-class-patch && munpack rlogo_icon.png.mpack) rlogo_icon.png (application/octet-stream) install -m 0644 debian/icon-class-patch/rlogo_icon.png \ debian/r-base-core/usr/share/icons/hicolor/48x48/apps install -m 0644 debian/icon-class-patch/R.desktop \ debian/r-base-core/usr/share/applications rm debian/icon-class-patch/rlogo_icon.png touch install-arch-stamp *** binary-arch *** dh_testdir -a dh_testroot -a dh_installdocs -pr-base-core doc/NEWS.* README \ debian/README.Atlas \ debian/README.mathlib dh_installdocs -pr-mathlib doc/NEWS.* README \ debian/README.mathlib dh_installdocs -pr-base-core-dbg dh_installexamples -pr-mathlib src/nmath/standalone/test.c #dh_installmenu -a # (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .) (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .) (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .) install -p -m 0644 debian/r-base-core.lintian \ /<>/debian/r-base-core/usr/share/lintian/overrides/r-base-core install -p -m 0644 debian/r-recommended.lintian \ /<>/debian/r-recommended/usr/share/lintian/overrides/r-recommended install -p -m 0644 debian/r-mathlib.lintian \ /<>/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib dh_installchangelogs -a -k doc/NEWS dh_strip --dbg-package=r-base-core-dbg dh_compress -a dh_fixperms -a dh_link -a dh_makeshlibs -a dh_installdeb -a dh_perl -a dh_shlibdeps -a -l /<>/debian/r-base-core/usr/lib/R/lib dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package r-base-core: unknown substitution variable ${perl:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing r-mathlib (in debian/r-mathlib); do_strip: , oemstrip: pkgstriptranslations: processing r-base-core (in debian/r-base-core); do_strip: , oemstrip: pkgstriptranslations: processing r-base-core-dbg (in debian/r-base-core-dbg); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-mathlib/DEBIAN/control, package r-mathlib, directory debian/r-mathlib .. removing usr/share/doc/r-mathlib/changelog.gz INFO: pkgstripfiles: waiting for lock (r-mathlib) ... pkgstripfiles: processing control file: debian/r-base-core-dbg/DEBIAN/control, package r-base-core-dbg, directory debian/r-base-core-dbg .. removing usr/share/doc/r-base-core-dbg/changelog.gz INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... debian/r-base-core/usr/share/applications/R.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-base-core/DEBIAN/control, package r-base-core, directory debian/r-base-core .. removing usr/share/doc/r-base-core/changelog.gz pkgstripfiles: Truncating usr/share/doc/r-base-core/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-base-core ... pkgstripfiles: Truncating usr/share/doc/r-mathlib/changelog.Debian.gz to topmost ten records Searching for duplicated docs in dependency r-base-core... pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-mathlib ... pkgstripfiles: No PNG files. symlinking changelog.Debian.gz in r-base-core-dbg to file in r-base-core dpkg-deb: building package 'r-mathlib' in '../r-mathlib_3.4.3-1_ppc64el.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-base-core-dbg ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-base-core-dbg' in '../r-base-core-dbg_3.4.3-1_ppc64el.deb'. ooooWARNING: optipng failed on usr/lib/R/library/graphics/help/figures/pch.png, ignoring oWARNING: optipng failed on usr/lib/R/library/graphics/help/figures/oma.png, ignoring .WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/mai.png, ignoring .ooo pkgstripfiles: PNG optimization (8/0) for package r-base-core took 6 s dpkg-deb: building package 'r-base-core' in '../r-base-core_3.4.3-1_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-base_3.4.3-1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-base-3.4.3 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171130-2308 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-base_3.4.3-1_ppc64el.changes: ------------------------------- Format: 1.8 Date: Thu, 30 Nov 2017 06:19:52 -0600 Source: r-base Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg Architecture: ppc64el Version: 3.4.3-1 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dirk Eddelbuettel Description: r-base - GNU R statistical computation and graphics system r-base-core - GNU R core of statistical computation and graphics system r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen r-base-dev - GNU R installation of auxiliary GNU R packages r-base-html - GNU R html docs for statistical computing system functions r-doc-html - GNU R html manuals for statistical computing system r-doc-info - GNU R info manuals statistical computing system r-doc-pdf - GNU R pdf manuals for statistical computing system r-mathlib - GNU R standalone mathematics library r-recommended - GNU R collection of recommended packages [metapackage] Changes: r-base (3.4.3-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 2a2d110dbc0cc164e14b0f09864a67816924aab7 5268108 r-base-core-dbg_3.4.3-1_ppc64el.deb b8d58caf8d22ede49ce3da80510650e70b78e983 23330392 r-base-core_3.4.3-1_ppc64el.deb 0541debd5759ef67227b3d480c64032e3a38049d 16133 r-base_3.4.3-1_ppc64el.buildinfo f55630cbc64d494caf54f96afd27eace9a1b30ea 1597748 r-mathlib_3.4.3-1_ppc64el.deb Checksums-Sha256: 3c1ca6a15cb75d37b990b4b5539bd7ad2ec65eede4794f2231ae8d501fe68a2e 5268108 r-base-core-dbg_3.4.3-1_ppc64el.deb c56089620b8f431233ca611b81b60d0a4ebb55e432efa8790d4b542f50e23d12 23330392 r-base-core_3.4.3-1_ppc64el.deb 0c4355b14109c8fa6ad605fdf320a80d05d38891cc55cfd7bd3491b64bdcf6f8 16133 r-base_3.4.3-1_ppc64el.buildinfo 8d7e7eb3d61c82ddca93cc418880f858bcdf7afa2505da9b859c81527562c1fd 1597748 r-mathlib_3.4.3-1_ppc64el.deb Files: cefa69e61d4d10d59e0388e15dd435f5 5268108 debug optional r-base-core-dbg_3.4.3-1_ppc64el.deb c99307af147228fdccefacd017c28721 23330392 gnu-r optional r-base-core_3.4.3-1_ppc64el.deb 35791950c819ada2ffc5fb6c30a9b7d4 16133 gnu-r optional r-base_3.4.3-1_ppc64el.buildinfo 3dbedfd37fa4510f870280499d15d29d 1597748 gnu-r optional r-mathlib_3.4.3-1_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-base-core-dbg_3.4.3-1_ppc64el.deb ----------------------------------- new debian package, version 2.0. size 5268108 bytes: control archive=2256 bytes. 2638 bytes, 40 lines control 2088 bytes, 20 lines md5sums Package: r-base-core-dbg Source: r-base Version: 3.4.3-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Dirk Eddelbuettel Installed-Size: 5773 Depends: r-base-core (= 3.4.3-1), r-base-dev (= 3.4.3-1) Section: debug Priority: optional Homepage: http://www.r-project.org/ Description: GNU R debug symbols for statistical comp. language and environment R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package contains debugging symbol tables for the binaries and dynamic libraries in the r-base-core package. Build-Ids: 1d512ba540118b9dde1c9086055568e6f1002d7b 224baf301ebdefbb0b608ae4d3c256850d735196 3222ab921c84ac37647a37636366ebb23910f639 33c489258596de8fd16c45759c4602e15bc8da0b 4e2173af9cff9623bf076f44c3ddea9136c945fe 4e5d60e6b44bd236b910c3d489822c737a664851 621e589248e0497e6bacc735143f3949c660ffeb 62c3e58e998c4bf7323f9bc677e2032f2157df8c 6716dad621d76f50dffae1e2620e5a90ec6c4593 6a52009fd632da5443b9b2cca35038319e2a2887 6e0fec8e7836b70f33c8f52248b1d2239d27ad08 707f86a4abee47a47c5d3cf7e3cb6ced11c59f7d 707f86a4abee47a47c5d3cf7e3cb6ced11c59f7d 995c617ca1949cef8244deb63fdf2d6345193f9a a4c33bcdb557b3a6e1f98a275dccd0c7354dbfe4 bdfdced5ad2ee65b59857d17e77a59e071eb5baa e50b05972d0ba068303b03ba8cb19e358ae018c9 f4df17dfb7e100d256c64e8e5d8d4403b9cc2ad3 f8af26a757e54e09f842de449f6abbb0645dbab1 drwxr-xr-x root/root 0 2017-11-30 12:19 ./ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/1d/ -rw-r--r-- root/root 54792 2017-11-30 12:19 ./usr/lib/debug/.build-id/1d/512ba540118b9dde1c9086055568e6f1002d7b.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/22/ -rw-r--r-- root/root 261168 2017-11-30 12:19 ./usr/lib/debug/.build-id/22/4baf301ebdefbb0b608ae4d3c256850d735196.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/32/ -rw-r--r-- root/root 161888 2017-11-30 12:19 ./usr/lib/debug/.build-id/32/22ab921c84ac37647a37636366ebb23910f639.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/33/ -rw-r--r-- root/root 73984 2017-11-30 12:19 ./usr/lib/debug/.build-id/33/c489258596de8fd16c45759c4602e15bc8da0b.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/4e/ -rw-r--r-- root/root 59888 2017-11-30 12:19 ./usr/lib/debug/.build-id/4e/2173af9cff9623bf076f44c3ddea9136c945fe.debug -rw-r--r-- root/root 51328 2017-11-30 12:19 ./usr/lib/debug/.build-id/4e/5d60e6b44bd236b910c3d489822c737a664851.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/50/ -rw-r--r-- root/root 205312 2017-11-30 12:19 ./usr/lib/debug/.build-id/50/26e06e1518454e3d2d3e04f43dba2a86ca6e23.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/62/ -rw-r--r-- root/root 7960 2017-11-30 12:19 ./usr/lib/debug/.build-id/62/1e589248e0497e6bacc735143f3949c660ffeb.debug -rw-r--r-- root/root 131768 2017-11-30 12:19 ./usr/lib/debug/.build-id/62/c3e58e998c4bf7323f9bc677e2032f2157df8c.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/67/ -rw-r--r-- root/root 780536 2017-11-30 12:19 ./usr/lib/debug/.build-id/67/16dad621d76f50dffae1e2620e5a90ec6c4593.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/6a/ -rw-r--r-- root/root 3081480 2017-11-30 12:19 ./usr/lib/debug/.build-id/6a/52009fd632da5443b9b2cca35038319e2a2887.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/6e/ -rw-r--r-- root/root 80360 2017-11-30 12:19 ./usr/lib/debug/.build-id/6e/0fec8e7836b70f33c8f52248b1d2239d27ad08.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/70/ -rw-r--r-- root/root 12240 2017-11-30 12:19 ./usr/lib/debug/.build-id/70/7f86a4abee47a47c5d3cf7e3cb6ced11c59f7d.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/99/ -rw-r--r-- root/root 311896 2017-11-30 12:19 ./usr/lib/debug/.build-id/99/5c617ca1949cef8244deb63fdf2d6345193f9a.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/a4/ -rw-r--r-- root/root 14688 2017-11-30 12:19 ./usr/lib/debug/.build-id/a4/c33bcdb557b3a6e1f98a275dccd0c7354dbfe4.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/bd/ -rw-r--r-- root/root 32832 2017-11-30 12:19 ./usr/lib/debug/.build-id/bd/fdced5ad2ee65b59857d17e77a59e071eb5baa.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/e5/ -rw-r--r-- root/root 108152 2017-11-30 12:19 ./usr/lib/debug/.build-id/e5/0b05972d0ba068303b03ba8cb19e358ae018c9.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/f4/ -rw-r--r-- root/root 189888 2017-11-30 12:19 ./usr/lib/debug/.build-id/f4/df17dfb7e100d256c64e8e5d8d4403b9cc2ad3.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/debug/.build-id/f8/ -rw-r--r-- root/root 111400 2017-11-30 12:19 ./usr/lib/debug/.build-id/f8/af26a757e54e09f842de449f6abbb0645dbab1.debug drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/doc/r-base-core-dbg/ lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/share/doc/r-base-core-dbg/NEWS.gz -> changelog.gz lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/share/doc/r-base-core-dbg/changelog.Debian.gz -> ../r-base-core/changelog.Debian.gz -rw-r--r-- root/root 20761 2010-08-05 18:01 ./usr/share/doc/r-base-core-dbg/copyright drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/lintian/overrides/ r-base-core_3.4.3-1_ppc64el.deb ------------------------------- new debian package, version 2.0. size 23330392 bytes: control archive=24000 bytes. 93 bytes, 5 lines conffiles 2783 bytes, 45 lines control 73358 bytes, 931 lines md5sums 2434 bytes, 68 lines * postinst #!/bin/sh 215 bytes, 5 lines * postrm #!/bin/sh 865 bytes, 37 lines * preinst #!/bin/sh 887 bytes, 29 lines * prerm #!/bin/sh Package: r-base-core Source: r-base Version: 3.4.3-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Dirk Eddelbuettel Installed-Size: 38667 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.23), libcairo2 (>= 1.6.0), libcurl3 (>= 7.28.0), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libicu60 (>= 60.1-1~), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre3, libpng16-16 (>= 1.6.2-1), libreadline7 (>= 6.0), libtcl8.6 (>= 8.6.0), libtiff5 (>= 4.0.3), libtk8.6 (>= 8.6.0), libx11-6, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0), ca-certificates Recommends: r-recommended, r-base-dev, r-doc-html Suggests: ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html Conflicts: r-base-latex, r-cran-rcompgen, r-gnome Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0) Provides: r-api-3.4, r-base-latex, r-cran-rcompgen, r-gnome Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R core of statistical computation and graphics system R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the core GNU R system from which only the optional documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info have been split off to somewhat reduce the size of this package. drwxr-xr-x root/root 0 2017-11-30 12:19 ./ drwxr-xr-x root/root 0 2017-11-30 12:19 ./etc/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./etc/R/ -rw-r--r-- root/root 7967 2017-11-30 12:19 ./etc/R/Makeconf -rw-r--r-- root/root 934 2017-11-30 12:19 ./etc/R/Renviron.site -rw-r--r-- root/root 792 2017-11-30 12:19 ./etc/R/Rprofile.site -rw-r--r-- root/root 803 2017-11-30 12:19 ./etc/R/ldpaths -rw-r--r-- root/root 1161 2017-11-30 12:19 ./etc/R/repositories drwxr-xr-x root/root 0 2017-11-30 12:19 ./etc/ld.so.conf.d/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/bin/ -rwxr-xr-x root/root 8722 2017-11-30 12:19 ./usr/bin/R -rwxr-xr-x root/root 67520 2017-11-30 12:19 ./usr/bin/Rscript drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/ lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/lib/R/COPYING -> ../../share/common-licenses/GPL-2 -rw-r--r-- root/root 46 2017-11-30 12:19 ./usr/lib/R/SVN-REVISION drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/bin/ -rwxr-xr-x root/root 1837 2017-11-30 12:19 ./usr/lib/R/bin/BATCH -rwxr-xr-x root/root 2165 2017-11-30 12:19 ./usr/lib/R/bin/COMPILE -rwxr-xr-x root/root 823 2017-11-30 12:19 ./usr/lib/R/bin/INSTALL -rwxr-xr-x root/root 1442 2017-11-30 12:19 ./usr/lib/R/bin/LINK -rwxr-xr-x root/root 8722 2017-11-30 12:19 ./usr/lib/R/bin/R -rwxr-xr-x root/root 158 2017-11-30 12:19 ./usr/lib/R/bin/REMOVE -rwxr-xr-x root/root 1375 2017-11-30 12:19 ./usr/lib/R/bin/Rcmd -rwxr-xr-x root/root 316 2017-11-30 12:19 ./usr/lib/R/bin/Rd2pdf -rwxr-xr-x root/root 359 2017-11-30 12:19 ./usr/lib/R/bin/Rdconv -rwxr-xr-x root/root 258 2017-11-30 12:19 ./usr/lib/R/bin/Rdiff -rwxr-xr-x root/root 310 2017-11-30 12:19 ./usr/lib/R/bin/Rprof -rwxr-xr-x root/root 67520 2017-11-30 12:19 ./usr/lib/R/bin/Rscript -rwxr-xr-x root/root 155 2017-11-30 12:19 ./usr/lib/R/bin/SHLIB -rwxr-xr-x root/root 318 2017-11-30 12:19 ./usr/lib/R/bin/Stangle -rwxr-xr-x root/root 316 2017-11-30 12:19 ./usr/lib/R/bin/Sweave -rwxr-xr-x root/root 317 2017-11-30 12:19 ./usr/lib/R/bin/build -rwxr-xr-x root/root 317 2017-11-30 12:19 ./usr/lib/R/bin/check -rwxr-xr-x root/root 11377 2017-11-30 12:19 ./usr/lib/R/bin/config drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/bin/exec/ -rwxr-xr-x root/root 67512 2017-11-30 12:19 ./usr/lib/R/bin/exec/R -rwxr-xr-x root/root 3618 2017-11-30 12:19 ./usr/lib/R/bin/f77_f2c -rwxr-xr-x root/root 14706 2017-11-30 12:19 ./usr/lib/R/bin/javareconf -rwxr-xr-x root/root 356039 2017-11-30 12:19 ./usr/lib/R/bin/libtool -rwxr-xr-x root/root 3496 2017-11-30 12:19 ./usr/lib/R/bin/mkinstalldirs -rwxr-xr-x root/root 483 2017-11-30 12:19 ./usr/lib/R/bin/pager -rwxr-xr-x root/root 4121 2017-11-30 12:19 ./usr/lib/R/bin/rtags drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/etc/ lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/lib/R/etc/Makeconf -> /etc/R/Makeconf lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/lib/R/etc/Renviron -> /etc/R/Renviron -rw-r--r-- root/root 1560 2017-11-30 12:19 ./usr/lib/R/etc/Renviron.orig lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/lib/R/etc/Renviron.site -> /etc/R/Renviron.site -rw-r--r-- root/root 1863 2017-11-30 12:19 ./usr/lib/R/etc/Renviron.ucf lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/lib/R/etc/Rprofile.site -> /etc/R/Rprofile.site -rw-r--r-- root/root 190 2017-11-30 12:19 ./usr/lib/R/etc/javaconf lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/lib/R/etc/ldpaths -> /etc/R/ldpaths lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/lib/R/etc/repositories -> /etc/R/repositories drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/lib/ -rw-r--r-- root/root 4042480 2017-11-30 12:19 ./usr/lib/R/lib/libR.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/base/ -rw-r--r-- root/root 956 2017-11-30 12:19 ./usr/lib/R/library/base/CITATION -rw-r--r-- root/root 286 2017-11-30 12:19 ./usr/lib/R/library/base/DESCRIPTION -rw-r--r-- root/root 23742 2017-11-30 12:19 ./usr/lib/R/library/base/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/base/Meta/ -rw-r--r-- root/root 21340 2017-11-30 12:19 ./usr/lib/R/library/base/Meta/Rd.rds -rw-r--r-- root/root 244 2017-11-30 12:19 ./usr/lib/R/library/base/Meta/demo.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/base/Meta/features.rds -rw-r--r-- root/root 21923 2017-11-30 12:19 ./usr/lib/R/library/base/Meta/hsearch.rds -rw-r--r-- root/root 12670 2017-11-30 12:19 ./usr/lib/R/library/base/Meta/links.rds -rw-r--r-- root/root 502 2017-11-30 12:19 ./usr/lib/R/library/base/Meta/package.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/base/R/ -rw-r--r-- root/root 5969 2017-11-30 12:19 ./usr/lib/R/library/base/R/Rprofile -rw-r--r-- root/root 4880 2017-11-30 12:19 ./usr/lib/R/library/base/R/base -rw-r--r-- root/root 949282 2017-11-30 12:19 ./usr/lib/R/library/base/R/base.rdb -rw-r--r-- root/root 13161 2017-11-30 12:19 ./usr/lib/R/library/base/R/base.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/base/demo/ -rw-r--r-- root/root 1179 2017-11-30 12:19 ./usr/lib/R/library/base/demo/error.catching.R -rw-r--r-- root/root 4252 2017-11-30 12:19 ./usr/lib/R/library/base/demo/is.things.R -rw-r--r-- root/root 2115 2017-11-30 12:19 ./usr/lib/R/library/base/demo/recursion.R -rw-r--r-- root/root 1560 2017-11-30 12:19 ./usr/lib/R/library/base/demo/scoping.R drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/base/help/ -rw-r--r-- root/root 33138 2017-11-30 12:19 ./usr/lib/R/library/base/help/AnIndex -rw-r--r-- root/root 11833 2017-11-30 12:19 ./usr/lib/R/library/base/help/aliases.rds -rw-r--r-- root/root 2059776 2017-11-30 12:19 ./usr/lib/R/library/base/help/base.rdb -rw-r--r-- root/root 8934 2017-11-30 12:19 ./usr/lib/R/library/base/help/base.rdx -rw-r--r-- root/root 3074 2017-11-30 12:19 ./usr/lib/R/library/base/help/paths.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/base/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/compiler/ -rw-r--r-- root/root 283 2017-11-30 12:19 ./usr/lib/R/library/compiler/DESCRIPTION -rw-r--r-- root/root 43 2017-11-30 12:19 ./usr/lib/R/library/compiler/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/compiler/Meta/ -rw-r--r-- root/root 301 2017-11-30 12:19 ./usr/lib/R/library/compiler/Meta/Rd.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/compiler/Meta/features.rds -rw-r--r-- root/root 374 2017-11-30 12:19 ./usr/lib/R/library/compiler/Meta/hsearch.rds -rw-r--r-- root/root 209 2017-11-30 12:19 ./usr/lib/R/library/compiler/Meta/links.rds -rw-r--r-- root/root 254 2017-11-30 12:19 ./usr/lib/R/library/compiler/Meta/nsInfo.rds -rw-r--r-- root/root 482 2017-11-30 12:19 ./usr/lib/R/library/compiler/Meta/package.rds -rw-r--r-- root/root 127 2017-11-30 12:19 ./usr/lib/R/library/compiler/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/compiler/R/ -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/compiler/R/compiler -rw-r--r-- root/root 184492 2017-11-30 12:19 ./usr/lib/R/library/compiler/R/compiler.rdb -rw-r--r-- root/root 3441 2017-11-30 12:19 ./usr/lib/R/library/compiler/R/compiler.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/compiler/help/ -rw-r--r-- root/root 174 2017-11-30 12:19 ./usr/lib/R/library/compiler/help/AnIndex -rw-r--r-- root/root 145 2017-11-30 12:19 ./usr/lib/R/library/compiler/help/aliases.rds -rw-r--r-- root/root 7838 2017-11-30 12:19 ./usr/lib/R/library/compiler/help/compiler.rdb -rw-r--r-- root/root 149 2017-11-30 12:19 ./usr/lib/R/library/compiler/help/compiler.rdx -rw-r--r-- root/root 124 2017-11-30 12:19 ./usr/lib/R/library/compiler/help/paths.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/compiler/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/datasets/ -rw-r--r-- root/root 275 2017-11-30 12:19 ./usr/lib/R/library/datasets/DESCRIPTION -rw-r--r-- root/root 5661 2017-11-30 12:19 ./usr/lib/R/library/datasets/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/datasets/Meta/ -rw-r--r-- root/root 3664 2017-11-30 12:19 ./usr/lib/R/library/datasets/Meta/Rd.rds -rw-r--r-- root/root 2696 2017-11-30 12:19 ./usr/lib/R/library/datasets/Meta/data.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/datasets/Meta/features.rds -rw-r--r-- root/root 3263 2017-11-30 12:19 ./usr/lib/R/library/datasets/Meta/hsearch.rds -rw-r--r-- root/root 1363 2017-11-30 12:19 ./usr/lib/R/library/datasets/Meta/links.rds -rw-r--r-- root/root 179 2017-11-30 12:19 ./usr/lib/R/library/datasets/Meta/nsInfo.rds -rw-r--r-- root/root 472 2017-11-30 12:19 ./usr/lib/R/library/datasets/Meta/package.rds -rw-r--r-- root/root 71 2017-11-30 12:19 ./usr/lib/R/library/datasets/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/datasets/data/ -rw-r--r-- root/root 113027 2017-11-30 12:19 ./usr/lib/R/library/datasets/data/Rdata.rdb -rw-r--r-- root/root 1062 2017-11-30 12:19 ./usr/lib/R/library/datasets/data/Rdata.rds -rw-r--r-- root/root 1532 2017-11-30 12:19 ./usr/lib/R/library/datasets/data/Rdata.rdx -rw-r--r-- root/root 2122 2017-11-30 12:19 ./usr/lib/R/library/datasets/data/morley.tab drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/datasets/help/ -rw-r--r-- root/root 2036 2017-11-30 12:19 ./usr/lib/R/library/datasets/help/AnIndex -rw-r--r-- root/root 902 2017-11-30 12:19 ./usr/lib/R/library/datasets/help/aliases.rds -rw-r--r-- root/root 200493 2017-11-30 12:19 ./usr/lib/R/library/datasets/help/datasets.rdb -rw-r--r-- root/root 2031 2017-11-30 12:19 ./usr/lib/R/library/datasets/help/datasets.rdx -rw-r--r-- root/root 854 2017-11-30 12:19 ./usr/lib/R/library/datasets/help/paths.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/datasets/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grDevices/ -rw-r--r-- root/root 422 2017-11-30 12:19 ./usr/lib/R/library/grDevices/DESCRIPTION -rw-r--r-- root/root 3920 2017-11-30 12:19 ./usr/lib/R/library/grDevices/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grDevices/Meta/ -rw-r--r-- root/root 3038 2017-11-30 12:19 ./usr/lib/R/library/grDevices/Meta/Rd.rds -rw-r--r-- root/root 133 2017-11-30 12:19 ./usr/lib/R/library/grDevices/Meta/demo.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/grDevices/Meta/features.rds -rw-r--r-- root/root 2999 2017-11-30 12:19 ./usr/lib/R/library/grDevices/Meta/hsearch.rds -rw-r--r-- root/root 1502 2017-11-30 12:19 ./usr/lib/R/library/grDevices/Meta/links.rds -rw-r--r-- root/root 1124 2017-11-30 12:19 ./usr/lib/R/library/grDevices/Meta/nsInfo.rds -rw-r--r-- root/root 583 2017-11-30 12:19 ./usr/lib/R/library/grDevices/Meta/package.rds -rw-r--r-- root/root 2492 2017-11-30 12:19 ./usr/lib/R/library/grDevices/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grDevices/R/ -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/grDevices/R/grDevices -rw-r--r-- root/root 200398 2017-11-30 12:19 ./usr/lib/R/library/grDevices/R/grDevices.rdb -rw-r--r-- root/root 2565 2017-11-30 12:19 ./usr/lib/R/library/grDevices/R/grDevices.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/ -rw-r--r-- root/root 8341 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/ArialMT-Bold.afm.gz -rw-r--r-- root/root 8291 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/ArialMT-BoldItalic.afm.gz -rw-r--r-- root/root 8343 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/ArialMT-Italic.afm.gz -rw-r--r-- root/root 8556 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/ArialMT.afm.gz -rw-r--r-- root/root 3037 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/CM_boldx_10.afm.gz -rw-r--r-- root/root 3126 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/CM_boldx_italic_10.afm.gz -rw-r--r-- root/root 3031 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/CM_italic_10.afm.gz -rw-r--r-- root/root 2935 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/CM_regular_10.afm.gz -rw-r--r-- root/root 2237 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/CM_symbol_10.afm.gz -rw-r--r-- root/root 3967 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Courier-Bold.afm.gz -rw-r--r-- root/root 4088 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Courier-BoldOblique.afm.gz -rw-r--r-- root/root 4082 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Courier-Oblique.afm.gz -rw-r--r-- root/root 3961 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Courier.afm.gz -rw-r--r-- root/root 12984 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Helvetica-Bold.afm.gz -rw-r--r-- root/root 13187 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm.gz -rw-r--r-- root/root 13803 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Helvetica-Oblique.afm.gz -rw-r--r-- root/root 13624 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Helvetica.afm.gz -rw-r--r-- root/root 1001 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/MustRead.html -rw-r--r-- root/root 851 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/README -rw-r--r-- root/root 3432 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Symbol.afm.gz -rw-r--r-- root/root 12314 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Times-Bold.afm.gz -rw-r--r-- root/root 11690 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Times-BoldItalic.afm.gz -rw-r--r-- root/root 12641 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Times-Italic.afm.gz -rw-r--r-- root/root 11829 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/Times-Roman.afm.gz -rw-r--r-- root/root 2527 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/ZapfDingbats.afm.gz -rw-r--r-- root/root 10212 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/a010013l.afm.gz -rw-r--r-- root/root 10035 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/a010015l.afm.gz -rw-r--r-- root/root 10260 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/a010033l.afm.gz -rw-r--r-- root/root 10177 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/a010035l.afm.gz -rw-r--r-- root/root 4890 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/agd_____.afm.gz -rw-r--r-- root/root 4965 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/agdo____.afm.gz -rw-r--r-- root/root 5046 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/agw_____.afm.gz -rw-r--r-- root/root 5126 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/agwo____.afm.gz -rw-r--r-- root/root 10240 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/b018012l.afm.gz -rw-r--r-- root/root 10074 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/b018015l.afm.gz -rw-r--r-- root/root 10348 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/b018032l.afm.gz -rw-r--r-- root/root 10346 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/b018035l.afm.gz -rw-r--r-- root/root 4241 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/bkd_____.afm.gz -rw-r--r-- root/root 4356 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/bkdi____.afm.gz -rw-r--r-- root/root 4244 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/bkl_____.afm.gz -rw-r--r-- root/root 4318 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/bkli____.afm.gz -rw-r--r-- root/root 10330 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/c059013l.afm.gz -rw-r--r-- root/root 10234 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/c059016l.afm.gz -rw-r--r-- root/root 10527 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/c059033l.afm.gz -rw-r--r-- root/root 10461 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/c059036l.afm.gz -rw-r--r-- root/root 2924 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/cmbxti10.afm.gz -rw-r--r-- root/root 2904 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/cmti10.afm.gz -rw-r--r-- root/root 3960 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/cob_____.afm.gz -rw-r--r-- root/root 4071 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/cobo____.afm.gz -rw-r--r-- root/root 3959 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/com_____.afm.gz -rw-r--r-- root/root 4079 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/coo_____.afm.gz -rw-r--r-- root/root 4813 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/hv______.afm.gz -rw-r--r-- root/root 4678 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/hvb_____.afm.gz -rw-r--r-- root/root 4820 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/hvbo____.afm.gz -rw-r--r-- root/root 4797 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/hvn_____.afm.gz -rw-r--r-- root/root 4662 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/hvnb____.afm.gz -rw-r--r-- root/root 4813 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/hvnbo___.afm.gz -rw-r--r-- root/root 4950 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/hvno____.afm.gz -rw-r--r-- root/root 4964 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/hvo_____.afm.gz -rw-r--r-- root/root 10204 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n019003l.afm.gz -rw-r--r-- root/root 10032 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n019004l.afm.gz -rw-r--r-- root/root 10471 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n019023l.afm.gz -rw-r--r-- root/root 10310 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n019024l.afm.gz -rw-r--r-- root/root 10082 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n019043l.afm.gz -rw-r--r-- root/root 9772 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n019044l.afm.gz -rw-r--r-- root/root 10271 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n019063l.afm.gz -rw-r--r-- root/root 10153 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n019064l.afm.gz -rw-r--r-- root/root 10526 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n021003l.afm.gz -rw-r--r-- root/root 10342 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n021004l.afm.gz -rw-r--r-- root/root 10532 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n021023l.afm.gz -rw-r--r-- root/root 10512 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n021024l.afm.gz -rw-r--r-- root/root 5464 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n022003l.afm.gz -rw-r--r-- root/root 5561 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n022004l.afm.gz -rw-r--r-- root/root 5859 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n022023l.afm.gz -rw-r--r-- root/root 5841 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/n022024l.afm.gz -rw-r--r-- root/root 4268 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/ncb_____.afm.gz -rw-r--r-- root/root 4908 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/ncbi____.afm.gz -rw-r--r-- root/root 4506 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/nci_____.afm.gz -rw-r--r-- root/root 4440 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/ncr_____.afm.gz -rw-r--r-- root/root 10408 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/p052003l.afm.gz -rw-r--r-- root/root 10217 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/p052004l.afm.gz -rw-r--r-- root/root 10511 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/p052023l.afm.gz -rw-r--r-- root/root 10268 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/p052024l.afm.gz -rw-r--r-- root/root 4382 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/pob_____.afm.gz -rw-r--r-- root/root 4419 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/pobi____.afm.gz -rw-r--r-- root/root 4441 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/poi_____.afm.gz -rw-r--r-- root/root 4473 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/por_____.afm.gz -rw-r--r-- root/root 3370 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/s050000l.afm.gz -rw-r--r-- root/root 3385 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/sy______.afm.gz -rw-r--r-- root/root 4992 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/tib_____.afm.gz -rw-r--r-- root/root 5089 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/tibi____.afm.gz -rw-r--r-- root/root 5094 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/tii_____.afm.gz -rw-r--r-- root/root 4970 2017-11-30 12:19 ./usr/lib/R/library/grDevices/afm/tir_____.afm.gz drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grDevices/demo/ -rw-r--r-- root/root 3747 2017-11-30 12:19 ./usr/lib/R/library/grDevices/demo/colors.R -rw-r--r-- root/root 2588 2017-11-30 12:19 ./usr/lib/R/library/grDevices/demo/hclColors.R drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/ -rw-r--r-- root/root 2094 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/AdobeStd.enc -rw-r--r-- root/root 2514 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/AdobeSym.enc -rw-r--r-- root/root 2224 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/CP1250.enc -rw-r--r-- root/root 2389 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/CP1251.enc -rw-r--r-- root/root 2185 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/CP1253.enc -rw-r--r-- root/root 2247 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/CP1257.enc -rw-r--r-- root/root 2349 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/Cyrillic.enc -rw-r--r-- root/root 2212 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/Greek.enc -rw-r--r-- root/root 2213 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/ISOLatin1.enc -rw-r--r-- root/root 2187 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/ISOLatin2.enc -rw-r--r-- root/root 2272 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/ISOLatin7.enc -rw-r--r-- root/root 2196 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/ISOLatin9.enc -rw-r--r-- root/root 2290 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/KOI8-R.enc -rw-r--r-- root/root 2308 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/KOI8-U.enc -rw-r--r-- root/root 2262 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/MacRoman.enc -rw-r--r-- root/root 2207 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/PDFDoc.enc -rw-r--r-- root/root 2091 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/TeXtext.enc -rw-r--r-- root/root 2311 2017-11-30 12:19 ./usr/lib/R/library/grDevices/enc/WinAnsi.enc drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grDevices/help/ -rw-r--r-- root/root 2883 2017-11-30 12:19 ./usr/lib/R/library/grDevices/help/AnIndex -rw-r--r-- root/root 1249 2017-11-30 12:19 ./usr/lib/R/library/grDevices/help/aliases.rds -rw-r--r-- root/root 332575 2017-11-30 12:19 ./usr/lib/R/library/grDevices/help/grDevices.rdb -rw-r--r-- root/root 1581 2017-11-30 12:19 ./usr/lib/R/library/grDevices/help/grDevices.rdx -rw-r--r-- root/root 660 2017-11-30 12:19 ./usr/lib/R/library/grDevices/help/paths.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grDevices/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grDevices/icc/ -rw-r--r-- root/root 9521 2017-11-30 12:19 ./usr/lib/R/library/grDevices/icc/srgb -rw-r--r-- root/root 2680 2017-11-30 12:19 ./usr/lib/R/library/grDevices/icc/srgb.flate drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grDevices/libs/ -rw-r--r-- root/root 68560 2017-11-30 12:19 ./usr/lib/R/library/grDevices/libs/cairo.so -rw-r--r-- root/root 466072 2017-11-30 12:19 ./usr/lib/R/library/grDevices/libs/grDevices.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/graphics/ -rw-r--r-- root/root 359 2017-11-30 12:19 ./usr/lib/R/library/graphics/DESCRIPTION -rw-r--r-- root/root 3773 2017-11-30 12:19 ./usr/lib/R/library/graphics/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/graphics/Meta/ -rw-r--r-- root/root 3187 2017-11-30 12:19 ./usr/lib/R/library/graphics/Meta/Rd.rds -rw-r--r-- root/root 262 2017-11-30 12:19 ./usr/lib/R/library/graphics/Meta/demo.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/graphics/Meta/features.rds -rw-r--r-- root/root 3145 2017-11-30 12:19 ./usr/lib/R/library/graphics/Meta/hsearch.rds -rw-r--r-- root/root 1320 2017-11-30 12:19 ./usr/lib/R/library/graphics/Meta/links.rds -rw-r--r-- root/root 1154 2017-11-30 12:19 ./usr/lib/R/library/graphics/Meta/nsInfo.rds -rw-r--r-- root/root 559 2017-11-30 12:19 ./usr/lib/R/library/graphics/Meta/package.rds -rw-r--r-- root/root 2729 2017-11-30 12:19 ./usr/lib/R/library/graphics/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/graphics/R/ -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/graphics/R/graphics -rw-r--r-- root/root 312186 2017-11-30 12:19 ./usr/lib/R/library/graphics/R/graphics.rdb -rw-r--r-- root/root 1813 2017-11-30 12:19 ./usr/lib/R/library/graphics/R/graphics.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/graphics/demo/ -rw-r--r-- root/root 19972 2017-11-30 12:19 ./usr/lib/R/library/graphics/demo/Hershey.R -rw-r--r-- root/root 34519 2017-11-30 12:19 ./usr/lib/R/library/graphics/demo/Japanese.R -rw-r--r-- root/root 5039 2017-11-30 12:19 ./usr/lib/R/library/graphics/demo/graphics.R -rw-r--r-- root/root 1105 2017-11-30 12:19 ./usr/lib/R/library/graphics/demo/image.R -rw-r--r-- root/root 2791 2017-11-30 12:19 ./usr/lib/R/library/graphics/demo/persp.R -rw-r--r-- root/root 8666 2017-11-30 12:19 ./usr/lib/R/library/graphics/demo/plotmath.R drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/ -rw-r--r-- root/root 2533 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/AnIndex -rw-r--r-- root/root 996 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/aliases.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/figures/ -rw-r--r-- root/root 2541 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/figures/mai.pdf -rw-r--r-- root/root 4667 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/figures/mai.png -rw-r--r-- root/root 3763 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/figures/oma.pdf -rw-r--r-- root/root 5114 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/figures/oma.png -rw-r--r-- root/root 4994 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/figures/pch.pdf -rw-r--r-- root/root 5475 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/figures/pch.png -rw-r--r-- root/root 27187 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/figures/pch.svg -rw-r--r-- root/root 462449 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/graphics.rdb -rw-r--r-- root/root 1655 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/graphics.rdx -rw-r--r-- root/root 640 2017-11-30 12:19 ./usr/lib/R/library/graphics/help/paths.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/graphics/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/graphics/libs/ -rw-r--r-- root/root 396136 2017-11-30 12:19 ./usr/lib/R/library/graphics/libs/graphics.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grid/ -rw-r--r-- root/root 437 2017-11-30 12:19 ./usr/lib/R/library/grid/DESCRIPTION -rw-r--r-- root/root 4953 2017-11-30 12:19 ./usr/lib/R/library/grid/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grid/Meta/ -rw-r--r-- root/root 3530 2017-11-30 12:19 ./usr/lib/R/library/grid/Meta/Rd.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/grid/Meta/features.rds -rw-r--r-- root/root 3498 2017-11-30 12:19 ./usr/lib/R/library/grid/Meta/hsearch.rds -rw-r--r-- root/root 1937 2017-11-30 12:19 ./usr/lib/R/library/grid/Meta/links.rds -rw-r--r-- root/root 2070 2017-11-30 12:19 ./usr/lib/R/library/grid/Meta/nsInfo.rds -rw-r--r-- root/root 645 2017-11-30 12:19 ./usr/lib/R/library/grid/Meta/package.rds -rw-r--r-- root/root 602 2017-11-30 12:19 ./usr/lib/R/library/grid/Meta/vignette.rds -rw-r--r-- root/root 12900 2017-11-30 12:19 ./usr/lib/R/library/grid/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grid/R/ -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/grid/R/grid -rw-r--r-- root/root 453760 2017-11-30 12:19 ./usr/lib/R/library/grid/R/grid.rdb -rw-r--r-- root/root 8583 2017-11-30 12:19 ./usr/lib/R/library/grid/R/grid.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/ -rw-r--r-- root/root 2211 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/DivByZero.txt -rw-r--r-- root/root 56743 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/changes.txt -rw-r--r-- root/root 4547 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/displaylist.R -rw-r--r-- root/root 9796 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/displaylist.Rnw -rw-r--r-- root/root 157837 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/displaylist.pdf -rw-r--r-- root/root 4960 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/frame.R -rw-r--r-- root/root 16260 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/frame.Rnw -rw-r--r-- root/root 156425 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/frame.pdf -rw-r--r-- root/root 7586 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/grid.R -rw-r--r-- root/root 25135 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/grid.Rnw -rw-r--r-- root/root 233545 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/grid.pdf -rw-r--r-- root/root 10912 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/grobs.R -rw-r--r-- root/root 19100 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/grobs.Rnw -rw-r--r-- root/root 107598 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/grobs.pdf -rw-r--r-- root/root 7187 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/index.html -rw-r--r-- root/root 3160 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/interactive.R -rw-r--r-- root/root 4420 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/interactive.Rnw -rw-r--r-- root/root 91310 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/interactive.pdf -rw-r--r-- root/root 2624 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/locndimn.R -rw-r--r-- root/root 4422 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/locndimn.Rnw -rw-r--r-- root/root 89964 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/locndimn.pdf -rw-r--r-- root/root 985 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/moveline.R -rw-r--r-- root/root 2143 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/moveline.Rnw -rw-r--r-- root/root 87707 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/moveline.pdf -rw-r--r-- root/root 2226 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/nonfinite.R -rw-r--r-- root/root 4520 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/nonfinite.Rnw -rw-r--r-- root/root 79944 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/nonfinite.pdf -rw-r--r-- root/root 16582 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/plotexample.R -rw-r--r-- root/root 22649 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/plotexample.Rnw -rw-r--r-- root/root 224240 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/plotexample.pdf -rw-r--r-- root/root 6863 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/rotated.R -rw-r--r-- root/root 5116 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/rotated.Rnw -rw-r--r-- root/root 122343 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/rotated.pdf -rw-r--r-- root/root 1054 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/saveload.R -rw-r--r-- root/root 3874 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/saveload.Rnw -rw-r--r-- root/root 134320 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/saveload.pdf -rw-r--r-- root/root 4093 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/sharing.R -rw-r--r-- root/root 3076 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/sharing.Rnw -rw-r--r-- root/root 71278 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/sharing.pdf -rw-r--r-- root/root 8880 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/viewports.R -rw-r--r-- root/root 11209 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/viewports.Rnw -rw-r--r-- root/root 163484 2017-11-30 12:19 ./usr/lib/R/library/grid/doc/viewports.pdf drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grid/help/ -rw-r--r-- root/root 4932 2017-11-30 12:19 ./usr/lib/R/library/grid/help/AnIndex -rw-r--r-- root/root 1605 2017-11-30 12:19 ./usr/lib/R/library/grid/help/aliases.rds -rw-r--r-- root/root 266603 2017-11-30 12:19 ./usr/lib/R/library/grid/help/grid.rdb -rw-r--r-- root/root 1973 2017-11-30 12:19 ./usr/lib/R/library/grid/help/grid.rdx -rw-r--r-- root/root 777 2017-11-30 12:19 ./usr/lib/R/library/grid/help/paths.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grid/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/grid/libs/ -rw-r--r-- root/root 199488 2017-11-30 12:19 ./usr/lib/R/library/grid/libs/grid.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/methods/ -rw-r--r-- root/root 551 2017-11-30 12:19 ./usr/lib/R/library/methods/DESCRIPTION -rw-r--r-- root/root 5203 2017-11-30 12:19 ./usr/lib/R/library/methods/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/methods/Meta/ -rw-r--r-- root/root 5771 2017-11-30 12:19 ./usr/lib/R/library/methods/Meta/Rd.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/methods/Meta/features.rds -rw-r--r-- root/root 5835 2017-11-30 12:19 ./usr/lib/R/library/methods/Meta/hsearch.rds -rw-r--r-- root/root 4045 2017-11-30 12:19 ./usr/lib/R/library/methods/Meta/links.rds -rw-r--r-- root/root 1772 2017-11-30 12:19 ./usr/lib/R/library/methods/Meta/nsInfo.rds -rw-r--r-- root/root 704 2017-11-30 12:19 ./usr/lib/R/library/methods/Meta/package.rds -rw-r--r-- root/root 5567 2017-11-30 12:19 ./usr/lib/R/library/methods/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/methods/R/ -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/methods/R/methods -rw-r--r-- root/root 1280911 2017-11-30 12:19 ./usr/lib/R/library/methods/R/methods.rdb -rw-r--r-- root/root 14434 2017-11-30 12:19 ./usr/lib/R/library/methods/R/methods.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/methods/help/ -rw-r--r-- root/root 14357 2017-11-30 12:19 ./usr/lib/R/library/methods/help/AnIndex -rw-r--r-- root/root 4092 2017-11-30 12:19 ./usr/lib/R/library/methods/help/aliases.rds -rw-r--r-- root/root 514832 2017-11-30 12:19 ./usr/lib/R/library/methods/help/methods.rdb -rw-r--r-- root/root 2031 2017-11-30 12:19 ./usr/lib/R/library/methods/help/methods.rdx -rw-r--r-- root/root 881 2017-11-30 12:19 ./usr/lib/R/library/methods/help/paths.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/methods/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/methods/libs/ -rw-r--r-- root/root 67920 2017-11-30 12:19 ./usr/lib/R/library/methods/libs/methods.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/parallel/ -rw-r--r-- root/root 526 2017-11-30 12:19 ./usr/lib/R/library/parallel/DESCRIPTION -rw-r--r-- root/root 914 2017-11-30 12:19 ./usr/lib/R/library/parallel/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/parallel/Meta/ -rw-r--r-- root/root 967 2017-11-30 12:19 ./usr/lib/R/library/parallel/Meta/Rd.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/parallel/Meta/features.rds -rw-r--r-- root/root 999 2017-11-30 12:19 ./usr/lib/R/library/parallel/Meta/hsearch.rds -rw-r--r-- root/root 493 2017-11-30 12:19 ./usr/lib/R/library/parallel/Meta/links.rds -rw-r--r-- root/root 621 2017-11-30 12:19 ./usr/lib/R/library/parallel/Meta/nsInfo.rds -rw-r--r-- root/root 668 2017-11-30 12:19 ./usr/lib/R/library/parallel/Meta/package.rds -rw-r--r-- root/root 203 2017-11-30 12:19 ./usr/lib/R/library/parallel/Meta/vignette.rds -rw-r--r-- root/root 1345 2017-11-30 12:19 ./usr/lib/R/library/parallel/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/parallel/R/ -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/parallel/R/parallel -rw-r--r-- root/root 87619 2017-11-30 12:19 ./usr/lib/R/library/parallel/R/parallel.rdb -rw-r--r-- root/root 1711 2017-11-30 12:19 ./usr/lib/R/library/parallel/R/parallel.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/parallel/doc/ -rw-r--r-- root/root 1339 2017-11-30 12:19 ./usr/lib/R/library/parallel/doc/index.html -rw-r--r-- root/root 8874 2017-11-30 12:19 ./usr/lib/R/library/parallel/doc/parallel.R -rw-r--r-- root/root 35054 2017-11-30 12:19 ./usr/lib/R/library/parallel/doc/parallel.Rnw -rw-r--r-- root/root 291155 2017-11-30 12:19 ./usr/lib/R/library/parallel/doc/parallel.pdf drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/parallel/help/ -rw-r--r-- root/root 1023 2017-11-30 12:19 ./usr/lib/R/library/parallel/help/AnIndex -rw-r--r-- root/root 441 2017-11-30 12:19 ./usr/lib/R/library/parallel/help/aliases.rds -rw-r--r-- root/root 68662 2017-11-30 12:19 ./usr/lib/R/library/parallel/help/parallel.rdb -rw-r--r-- root/root 439 2017-11-30 12:19 ./usr/lib/R/library/parallel/help/parallel.rdx -rw-r--r-- root/root 257 2017-11-30 12:19 ./usr/lib/R/library/parallel/help/paths.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/parallel/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/parallel/libs/ -rw-r--r-- root/root 67856 2017-11-30 12:19 ./usr/lib/R/library/parallel/libs/parallel.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/splines/ -rw-r--r-- root/root 467 2017-11-30 12:19 ./usr/lib/R/library/splines/DESCRIPTION -rw-r--r-- root/root 832 2017-11-30 12:19 ./usr/lib/R/library/splines/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/splines/Meta/ -rw-r--r-- root/root 725 2017-11-30 12:19 ./usr/lib/R/library/splines/Meta/Rd.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/splines/Meta/features.rds -rw-r--r-- root/root 723 2017-11-30 12:19 ./usr/lib/R/library/splines/Meta/hsearch.rds -rw-r--r-- root/root 323 2017-11-30 12:19 ./usr/lib/R/library/splines/Meta/links.rds -rw-r--r-- root/root 573 2017-11-30 12:19 ./usr/lib/R/library/splines/Meta/nsInfo.rds -rw-r--r-- root/root 658 2017-11-30 12:19 ./usr/lib/R/library/splines/Meta/package.rds -rw-r--r-- root/root 1425 2017-11-30 12:19 ./usr/lib/R/library/splines/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/splines/R/ -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/splines/R/splines -rw-r--r-- root/root 50110 2017-11-30 12:19 ./usr/lib/R/library/splines/R/splines.rdb -rw-r--r-- root/root 804 2017-11-30 12:19 ./usr/lib/R/library/splines/R/splines.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/splines/help/ -rw-r--r-- root/root 541 2017-11-30 12:19 ./usr/lib/R/library/splines/help/AnIndex -rw-r--r-- root/root 229 2017-11-30 12:19 ./usr/lib/R/library/splines/help/aliases.rds -rw-r--r-- root/root 250 2017-11-30 12:19 ./usr/lib/R/library/splines/help/paths.rds -rw-r--r-- root/root 38847 2017-11-30 12:19 ./usr/lib/R/library/splines/help/splines.rdb -rw-r--r-- root/root 450 2017-11-30 12:19 ./usr/lib/R/library/splines/help/splines.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/splines/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/splines/libs/ -rw-r--r-- root/root 67632 2017-11-30 12:19 ./usr/lib/R/library/splines/libs/splines.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats/ -rw-r--r-- root/root 1552 2017-11-30 12:19 ./usr/lib/R/library/stats/COPYRIGHTS.modreg -rw-r--r-- root/root 415 2017-11-30 12:19 ./usr/lib/R/library/stats/DESCRIPTION -rw-r--r-- root/root 18777 2017-11-30 12:19 ./usr/lib/R/library/stats/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats/Meta/ -rw-r--r-- root/root 12893 2017-11-30 12:19 ./usr/lib/R/library/stats/Meta/Rd.rds -rw-r--r-- root/root 266 2017-11-30 12:19 ./usr/lib/R/library/stats/Meta/demo.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/stats/Meta/features.rds -rw-r--r-- root/root 12963 2017-11-30 12:19 ./usr/lib/R/library/stats/Meta/hsearch.rds -rw-r--r-- root/root 6430 2017-11-30 12:19 ./usr/lib/R/library/stats/Meta/links.rds -rw-r--r-- root/root 4342 2017-11-30 12:19 ./usr/lib/R/library/stats/Meta/nsInfo.rds -rw-r--r-- root/root 668 2017-11-30 12:19 ./usr/lib/R/library/stats/Meta/package.rds -rw-r--r-- root/root 16658 2017-11-30 12:19 ./usr/lib/R/library/stats/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats/R/ -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/stats/R/stats -rw-r--r-- root/root 1587013 2017-11-30 12:19 ./usr/lib/R/library/stats/R/stats.rdb -rw-r--r-- root/root 10813 2017-11-30 12:19 ./usr/lib/R/library/stats/R/stats.rdx -rw-r--r-- root/root 550 2017-11-30 12:19 ./usr/lib/R/library/stats/SOURCES.ts drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats/demo/ -rw-r--r-- root/root 744 2017-11-30 12:19 ./usr/lib/R/library/stats/demo/glm.vr.R -rw-r--r-- root/root 4993 2017-11-30 12:19 ./usr/lib/R/library/stats/demo/lm.glm.R -rw-r--r-- root/root 2506 2017-11-30 12:19 ./usr/lib/R/library/stats/demo/nlm.R -rw-r--r-- root/root 1282 2017-11-30 12:19 ./usr/lib/R/library/stats/demo/smooth.R drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats/help/ -rw-r--r-- root/root 15992 2017-11-30 12:19 ./usr/lib/R/library/stats/help/AnIndex -rw-r--r-- root/root 5299 2017-11-30 12:19 ./usr/lib/R/library/stats/help/aliases.rds -rw-r--r-- root/root 2375 2017-11-30 12:19 ./usr/lib/R/library/stats/help/paths.rds -rw-r--r-- root/root 1481353 2017-11-30 12:19 ./usr/lib/R/library/stats/help/stats.rdb -rw-r--r-- root/root 6553 2017-11-30 12:19 ./usr/lib/R/library/stats/help/stats.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats/libs/ -rw-r--r-- root/root 1054272 2017-11-30 12:19 ./usr/lib/R/library/stats/libs/stats.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats4/ -rw-r--r-- root/root 346 2017-11-30 12:19 ./usr/lib/R/library/stats4/DESCRIPTION -rw-r--r-- root/root 1215 2017-11-30 12:19 ./usr/lib/R/library/stats4/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats4/Meta/ -rw-r--r-- root/root 791 2017-11-30 12:19 ./usr/lib/R/library/stats4/Meta/Rd.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/stats4/Meta/features.rds -rw-r--r-- root/root 821 2017-11-30 12:19 ./usr/lib/R/library/stats4/Meta/hsearch.rds -rw-r--r-- root/root 419 2017-11-30 12:19 ./usr/lib/R/library/stats4/Meta/links.rds -rw-r--r-- root/root 417 2017-11-30 12:19 ./usr/lib/R/library/stats4/Meta/nsInfo.rds -rw-r--r-- root/root 555 2017-11-30 12:19 ./usr/lib/R/library/stats4/Meta/package.rds -rw-r--r-- root/root 694 2017-11-30 12:19 ./usr/lib/R/library/stats4/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats4/R/ -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/stats4/R/stats4 -rw-r--r-- root/root 114680 2017-11-30 12:19 ./usr/lib/R/library/stats4/R/stats4.rdb -rw-r--r-- root/root 1069 2017-11-30 12:19 ./usr/lib/R/library/stats4/R/stats4.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats4/help/ -rw-r--r-- root/root 1120 2017-11-30 12:19 ./usr/lib/R/library/stats4/help/AnIndex -rw-r--r-- root/root 349 2017-11-30 12:19 ./usr/lib/R/library/stats4/help/aliases.rds -rw-r--r-- root/root 253 2017-11-30 12:19 ./usr/lib/R/library/stats4/help/paths.rds -rw-r--r-- root/root 30467 2017-11-30 12:19 ./usr/lib/R/library/stats4/help/stats4.rdb -rw-r--r-- root/root 464 2017-11-30 12:19 ./usr/lib/R/library/stats4/help/stats4.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/stats4/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tcltk/ -rw-r--r-- root/root 344 2017-11-30 12:19 ./usr/lib/R/library/tcltk/DESCRIPTION -rw-r--r-- root/root 626 2017-11-30 12:19 ./usr/lib/R/library/tcltk/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tcltk/Meta/ -rw-r--r-- root/root 2375 2017-11-30 12:19 ./usr/lib/R/library/tcltk/Meta/Rd.rds -rw-r--r-- root/root 266 2017-11-30 12:19 ./usr/lib/R/library/tcltk/Meta/demo.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/tcltk/Meta/features.rds -rw-r--r-- root/root 2440 2017-11-30 12:19 ./usr/lib/R/library/tcltk/Meta/hsearch.rds -rw-r--r-- root/root 2072 2017-11-30 12:19 ./usr/lib/R/library/tcltk/Meta/links.rds -rw-r--r-- root/root 458 2017-11-30 12:19 ./usr/lib/R/library/tcltk/Meta/nsInfo.rds -rw-r--r-- root/root 550 2017-11-30 12:19 ./usr/lib/R/library/tcltk/Meta/package.rds -rw-r--r-- root/root 980 2017-11-30 12:19 ./usr/lib/R/library/tcltk/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tcltk/R/ -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/tcltk/R/tcltk -rw-r--r-- root/root 95612 2017-11-30 12:19 ./usr/lib/R/library/tcltk/R/tcltk.rdb -rw-r--r-- root/root 3477 2017-11-30 12:19 ./usr/lib/R/library/tcltk/R/tcltk.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tcltk/demo/ -rw-r--r-- root/root 5228 2017-11-30 12:19 ./usr/lib/R/library/tcltk/demo/tkcanvas.R -rw-r--r-- root/root 3476 2017-11-30 12:19 ./usr/lib/R/library/tcltk/demo/tkdensity.R -rw-r--r-- root/root 1229 2017-11-30 12:19 ./usr/lib/R/library/tcltk/demo/tkfaq.R -rw-r--r-- root/root 2975 2017-11-30 12:19 ./usr/lib/R/library/tcltk/demo/tkttest.R drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/ -rw-r--r-- root/root 949 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/Tk-frontend.R -rw-r--r-- root/root 2235 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/console.tcl -rw-r--r-- root/root 39160 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/hierarchy.tcl -rw-r--r-- root/root 1343 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/pkgIndex.tcl -rw-r--r-- root/root 78634 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/progressbar.tcl -rw-r--r-- root/root 17830 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/util-dump.tcl -rw-r--r-- root/root 5753 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/util-expand.tcl -rw-r--r-- root/root 2115 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/util-number.tcl -rw-r--r-- root/root 3600 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/util-string.tcl -rw-r--r-- root/root 7157 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/util-tk.tcl -rw-r--r-- root/root 23267 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/util.tcl -rw-r--r-- root/root 32703 2017-11-30 12:19 ./usr/lib/R/library/tcltk/exec/widget.tcl drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tcltk/help/ -rw-r--r-- root/root 7436 2017-11-30 12:19 ./usr/lib/R/library/tcltk/help/AnIndex -rw-r--r-- root/root 2067 2017-11-30 12:19 ./usr/lib/R/library/tcltk/help/aliases.rds -rw-r--r-- root/root 278 2017-11-30 12:19 ./usr/lib/R/library/tcltk/help/paths.rds -rw-r--r-- root/root 50980 2017-11-30 12:19 ./usr/lib/R/library/tcltk/help/tcltk.rdb -rw-r--r-- root/root 495 2017-11-30 12:19 ./usr/lib/R/library/tcltk/help/tcltk.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tcltk/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tcltk/libs/ -rw-r--r-- root/root 68152 2017-11-30 12:19 ./usr/lib/R/library/tcltk/libs/tcltk.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tools/ -rw-r--r-- root/root 392 2017-11-30 12:19 ./usr/lib/R/library/tools/DESCRIPTION -rw-r--r-- root/root 3789 2017-11-30 12:19 ./usr/lib/R/library/tools/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tools/Meta/ -rw-r--r-- root/root 3260 2017-11-30 12:19 ./usr/lib/R/library/tools/Meta/Rd.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/tools/Meta/features.rds -rw-r--r-- root/root 3204 2017-11-30 12:19 ./usr/lib/R/library/tools/Meta/hsearch.rds -rw-r--r-- root/root 1710 2017-11-30 12:19 ./usr/lib/R/library/tools/Meta/links.rds -rw-r--r-- root/root 1845 2017-11-30 12:19 ./usr/lib/R/library/tools/Meta/nsInfo.rds -rw-r--r-- root/root 600 2017-11-30 12:19 ./usr/lib/R/library/tools/Meta/package.rds -rw-r--r-- root/root 8060 2017-11-30 12:19 ./usr/lib/R/library/tools/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tools/R/ -rw-r--r-- root/root 6535 2017-11-30 12:19 ./usr/lib/R/library/tools/R/sysdata.rdb -rw-r--r-- root/root 192 2017-11-30 12:19 ./usr/lib/R/library/tools/R/sysdata.rdx -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/tools/R/tools -rw-r--r-- root/root 1750876 2017-11-30 12:19 ./usr/lib/R/library/tools/R/tools.rdb -rw-r--r-- root/root 11216 2017-11-30 12:19 ./usr/lib/R/library/tools/R/tools.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tools/help/ -rw-r--r-- root/root 3730 2017-11-30 12:19 ./usr/lib/R/library/tools/help/AnIndex -rw-r--r-- root/root 1473 2017-11-30 12:19 ./usr/lib/R/library/tools/help/aliases.rds -rw-r--r-- root/root 757 2017-11-30 12:19 ./usr/lib/R/library/tools/help/paths.rds -rw-r--r-- root/root 229971 2017-11-30 12:19 ./usr/lib/R/library/tools/help/tools.rdb -rw-r--r-- root/root 1644 2017-11-30 12:19 ./usr/lib/R/library/tools/help/tools.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tools/html/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/tools/libs/ -rw-r--r-- root/root 133792 2017-11-30 12:19 ./usr/lib/R/library/tools/libs/tools.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/ -rw-r--r-- root/root 238 2017-11-30 12:19 ./usr/lib/R/library/translations/DESCRIPTION drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/da/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/ -rw-r--r-- root/root 53685 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3227 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 10085 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 1247 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 1247 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 1335 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 2626 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2113 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 4480 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1279 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2168 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 5905 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 4964 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 48915 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/R.mo -rw-r--r-- root/root 20034 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 9186 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 583 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 843 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/grid.mo -rw-r--r-- root/root 4281 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/methods.mo -rw-r--r-- root/root 1484 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 552 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/splines.mo -rw-r--r-- root/root 6180 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1272 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 969 2017-11-30 12:19 ./usr/lib/R/library/translations/da/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/de/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/ -rw-r--r-- root/root 53834 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3573 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 13424 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 15442 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 17066 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 68155 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 3811 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2612 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 86428 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1294 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2238 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 44798 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 40881 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 163281 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/R.mo -rw-r--r-- root/root 20406 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 16772 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 12038 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2751 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5251 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2083 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 560 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/splines.mo -rw-r--r-- root/root 18919 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1310 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3614 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/tools.mo -rw-r--r-- root/root 5352 2017-11-30 12:19 ./usr/lib/R/library/translations/de/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/en/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/en/LC_MESSAGES/ -rw-r--r-- root/root 831 2017-11-30 12:19 ./usr/lib/R/library/translations/en/LC_MESSAGES/R.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/ -rw-r--r-- root/root 53797 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3475 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 12779 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 14883 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 16431 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 65181 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 3611 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2491 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 83649 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1207 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2149 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 42929 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 39471 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 155793 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R.mo -rw-r--r-- root/root 15711 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 11573 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2563 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/grid.mo -rw-r--r-- root/root 4943 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/methods.mo -rw-r--r-- root/root 1959 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 509 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/splines.mo -rw-r--r-- root/root 18097 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1217 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3427 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/tools.mo -rw-r--r-- root/root 5127 2017-11-30 12:19 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/en_GB/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/ -rw-r--r-- root/root 396 2017-11-30 12:19 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 956 2017-11-30 12:19 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/R.mo -rw-r--r-- root/root 1166 2017-11-30 12:19 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/grDevices.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/es/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/es/LC_MESSAGES/ -rw-r--r-- root/root 115265 2017-11-30 12:19 ./usr/lib/R/library/translations/es/LC_MESSAGES/R.mo -rw-r--r-- root/root 20799 2017-11-30 12:19 ./usr/lib/R/library/translations/es/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 9207 2017-11-30 12:19 ./usr/lib/R/library/translations/es/LC_MESSAGES/graphics.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/fa/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/fa/LC_MESSAGES/ -rw-r--r-- root/root 553 2017-11-30 12:19 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 1656 2017-11-30 12:19 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 2208 2017-11-30 12:19 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R.mo -rw-r--r-- root/root 26917 2017-11-30 12:19 ./usr/lib/R/library/translations/fa/LC_MESSAGES/RGui.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/ -rw-r--r-- root/root 56369 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3787 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 13692 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 15574 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 17309 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 70340 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 3951 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2693 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 87517 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1395 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2390 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 43361 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 40140 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 164302 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R.mo -rw-r--r-- root/root 21274 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 17092 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 12487 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2844 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5603 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2208 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 582 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/splines.mo -rw-r--r-- root/root 18825 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1407 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3818 2017-11-30 12:19 ./usr/lib/R/library/translations/fr/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/it/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/ -rw-r--r-- root/root 19901 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 5783 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 8966 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 53920 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1269 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 916 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 5128 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 85043 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/R.mo -rw-r--r-- root/root 18580 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 4616 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 8747 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 566 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/grid.mo -rw-r--r-- root/root 11776 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/stats.mo -rw-r--r-- root/root 661 2017-11-30 12:19 ./usr/lib/R/library/translations/it/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/ -rw-r--r-- root/root 64468 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 4364 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 15549 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 17888 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 19961 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 77674 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 3174 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 99101 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1492 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2733 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 52810 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 47232 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 190790 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R.mo -rw-r--r-- root/root 23920 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 19889 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 13936 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 3230 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/grid.mo -rw-r--r-- root/root 6020 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/methods.mo -rw-r--r-- root/root 527 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/splines.mo -rw-r--r-- root/root 21515 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1435 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 4153 2017-11-30 12:19 ./usr/lib/R/library/translations/ja/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/ -rw-r--r-- root/root 43665 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 2408 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 13770 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 16151 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 16837 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 58582 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 4261 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 3039 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 81831 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1407 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2530 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 41387 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 42915 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 160357 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R.mo -rw-r--r-- root/root 22901 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 18059 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 12714 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 3055 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5773 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2363 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 561 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/splines.mo -rw-r--r-- root/root 19503 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1489 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3722 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/tools.mo -rw-r--r-- root/root 5663 2017-11-30 12:19 ./usr/lib/R/library/translations/ko/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/nn/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/nn/LC_MESSAGES/ -rw-r--r-- root/root 39889 2017-11-30 12:19 ./usr/lib/R/library/translations/nn/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 125529 2017-11-30 12:19 ./usr/lib/R/library/translations/nn/LC_MESSAGES/R.mo -rw-r--r-- root/root 20215 2017-11-30 12:19 ./usr/lib/R/library/translations/nn/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 9530 2017-11-30 12:19 ./usr/lib/R/library/translations/nn/LC_MESSAGES/graphics.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/ -rw-r--r-- root/root 60387 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 4009 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 14367 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 16206 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 18066 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 68446 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 4251 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2789 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 92991 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1517 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2476 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 48061 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 43535 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 168695 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R.mo -rw-r--r-- root/root 20885 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 17327 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 12703 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2975 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5275 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2301 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 721 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/splines.mo -rw-r--r-- root/root 19747 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1480 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3886 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/tools.mo -rw-r--r-- root/root 5708 2017-11-30 12:19 ./usr/lib/R/library/translations/pl/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/ -rw-r--r-- root/root 32403 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3553 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 9668 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 12405 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 5041 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 5106 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 2244 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 49188 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1354 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2325 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 2111 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 1218 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 131859 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R.mo -rw-r--r-- root/root 20729 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 2529 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 10057 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 957 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/grid.mo -rw-r--r-- root/root 4679 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/methods.mo -rw-r--r-- root/root 634 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/splines.mo -rw-r--r-- root/root 16935 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1370 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 814 2017-11-30 12:19 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/ -rw-r--r-- root/root 54805 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 4936 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 13627 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 15532 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 16692 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 65961 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 3908 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2662 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 86604 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1449 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2334 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 44414 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 40653 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 209653 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R.mo -rw-r--r-- root/root 20225 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 16327 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 15753 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2788 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5072 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2134 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 605 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/splines.mo -rw-r--r-- root/root 18617 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1376 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3675 2017-11-30 12:19 ./usr/lib/R/library/translations/ru/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/tr/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/tr/LC_MESSAGES/ -rw-r--r-- root/root 790 2017-11-30 12:19 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 34017 2017-11-30 12:19 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1275 2017-11-30 12:19 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 522 2017-11-30 12:19 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 941 2017-11-30 12:19 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 124265 2017-11-30 12:19 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R.mo -rw-r--r-- root/root 20684 2017-11-30 12:19 ./usr/lib/R/library/translations/tr/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 9716 2017-11-30 12:19 ./usr/lib/R/library/translations/tr/LC_MESSAGES/graphics.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/ -rw-r--r-- root/root 47656 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3209 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 11427 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 13590 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 14655 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 58897 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 3325 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2390 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 74985 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1204 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2112 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 30817 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 34114 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 139868 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R.mo -rw-r--r-- root/root 17418 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 14498 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 10701 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2362 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/grid.mo -rw-r--r-- root/root 4726 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/methods.mo -rw-r--r-- root/root 1909 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 501 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/splines.mo -rw-r--r-- root/root 16194 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1220 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3227 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_TW/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/ -rw-r--r-- root/root 125530 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R.mo -rw-r--r-- root/root 17721 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 9112 2017-11-30 12:19 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/graphics.mo drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/utils/ -rw-r--r-- root/root 347 2017-11-30 12:19 ./usr/lib/R/library/utils/DESCRIPTION -rw-r--r-- root/root 7962 2017-11-30 12:19 ./usr/lib/R/library/utils/INDEX drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/utils/Meta/ -rw-r--r-- root/root 6132 2017-11-30 12:19 ./usr/lib/R/library/utils/Meta/Rd.rds -rw-r--r-- root/root 112 2017-11-30 12:19 ./usr/lib/R/library/utils/Meta/features.rds -rw-r--r-- root/root 6006 2017-11-30 12:19 ./usr/lib/R/library/utils/Meta/hsearch.rds -rw-r--r-- root/root 3111 2017-11-30 12:19 ./usr/lib/R/library/utils/Meta/links.rds -rw-r--r-- root/root 2212 2017-11-30 12:19 ./usr/lib/R/library/utils/Meta/nsInfo.rds -rw-r--r-- root/root 567 2017-11-30 12:19 ./usr/lib/R/library/utils/Meta/package.rds -rw-r--r-- root/root 209 2017-11-30 12:19 ./usr/lib/R/library/utils/Meta/vignette.rds -rw-r--r-- root/root 6743 2017-11-30 12:19 ./usr/lib/R/library/utils/NAMESPACE drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/utils/R/ -rw-r--r-- root/root 14291 2017-11-30 12:19 ./usr/lib/R/library/utils/R/sysdata.rdb -rw-r--r-- root/root 175 2017-11-30 12:19 ./usr/lib/R/library/utils/R/sysdata.rdx -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/lib/R/library/utils/R/utils -rw-r--r-- root/root 881377 2017-11-30 12:19 ./usr/lib/R/library/utils/R/utils.rdb -rw-r--r-- root/root 6779 2017-11-30 12:19 ./usr/lib/R/library/utils/R/utils.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/utils/Sweave/ -rw-r--r-- root/root 1305 2017-11-30 12:19 ./usr/lib/R/library/utils/Sweave/Sweave-test-1.Rnw -rw-r--r-- root/root 725 2017-11-30 12:19 ./usr/lib/R/library/utils/Sweave/example-1.Rnw drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/utils/doc/ -rw-r--r-- root/root 1212 2017-11-30 12:19 ./usr/lib/R/library/utils/doc/Sweave.R -rw-r--r-- root/root 32774 2017-11-30 12:19 ./usr/lib/R/library/utils/doc/Sweave.Rnw -rw-r--r-- root/root 322552 2017-11-30 12:19 ./usr/lib/R/library/utils/doc/Sweave.pdf -rw-r--r-- root/root 1311 2017-11-30 12:19 ./usr/lib/R/library/utils/doc/index.html drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/utils/help/ -rw-r--r-- root/root 7009 2017-11-30 12:19 ./usr/lib/R/library/utils/help/AnIndex -rw-r--r-- root/root 2617 2017-11-30 12:19 ./usr/lib/R/library/utils/help/aliases.rds -rw-r--r-- root/root 1276 2017-11-30 12:19 ./usr/lib/R/library/utils/help/paths.rds -rw-r--r-- root/root 657136 2017-11-30 12:19 ./usr/lib/R/library/utils/help/utils.rdb -rw-r--r-- root/root 3160 2017-11-30 12:19 ./usr/lib/R/library/utils/help/utils.rdx drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/utils/html/ -rw-r--r-- root/root 13514 2017-11-30 12:19 ./usr/lib/R/library/utils/iconvlist drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/utils/libs/ -rw-r--r-- root/root 133720 2017-11-30 12:19 ./usr/lib/R/library/utils/libs/utils.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/library/utils/misc/ -rw-r--r-- root/root 38 2017-11-30 12:19 ./usr/lib/R/library/utils/misc/exDIF.csv -rw-r--r-- root/root 242 2017-11-30 12:19 ./usr/lib/R/library/utils/misc/exDIF.dif drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/modules/ -rw-r--r-- root/root 262016 2017-11-30 12:19 ./usr/lib/R/modules/R_X11.so -rw-r--r-- root/root 68752 2017-11-30 12:19 ./usr/lib/R/modules/R_de.so -rw-r--r-- root/root 133872 2017-11-30 12:19 ./usr/lib/R/modules/internet.so -rw-r--r-- root/root 67880 2017-11-30 12:19 ./usr/lib/R/modules/lapack.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/R/site-library/ lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/lib/libR.so -> R/lib/libR.so drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 274 2017-11-30 12:19 ./usr/lib/pkgconfig/libR.pc drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/doc/ -rw-r--r-- root/root 957 2017-11-30 12:19 ./usr/share/R/doc/AUTHORS -rw-r--r-- root/root 3283 2017-11-30 12:19 ./usr/share/R/doc/BioC_mirrors.csv lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/share/R/doc/COPYING -> ../../common-licenses/GPL-2 -rw-r--r-- root/root 23198 2017-11-30 12:19 ./usr/share/R/doc/COPYRIGHTS -rw-r--r-- root/root 23199 2017-11-30 12:19 ./usr/share/R/doc/CRAN_mirrors.csv -rw-r--r-- root/root 125788 2017-11-30 12:19 ./usr/share/R/doc/FAQ -rw-r--r-- root/root 2530 2017-11-30 12:19 ./usr/share/R/doc/KEYWORDS -rw-r--r-- root/root 3047 2017-11-30 12:19 ./usr/share/R/doc/KEYWORDS.db -rw-r--r-- root/root 246286 2017-11-30 12:19 ./usr/share/R/doc/NEWS -rw-r--r-- root/root 93568 2017-11-30 12:19 ./usr/share/R/doc/NEWS.0 -rw-r--r-- root/root 294277 2017-11-30 12:19 ./usr/share/R/doc/NEWS.1 -rw-r--r-- root/root 641818 2017-11-30 12:19 ./usr/share/R/doc/NEWS.2 -rw-r--r-- root/root 492740 2017-11-30 12:19 ./usr/share/R/doc/NEWS.pdf -rw-r--r-- root/root 403885 2017-11-30 12:19 ./usr/share/R/doc/NEWS.rds -rw-r--r-- root/root 1253 2017-11-30 12:19 ./usr/share/R/doc/RESOURCES -rw-r--r-- root/root 3498 2017-11-30 12:19 ./usr/share/R/doc/THANKS drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/doc/html/ -rw-r--r-- root/root 356339 2017-11-30 12:19 ./usr/share/R/doc/html/NEWS.2.html -rw-r--r-- root/root 348793 2017-11-30 12:19 ./usr/share/R/doc/html/NEWS.html -rw-r--r-- root/root 1335 2017-11-30 12:19 ./usr/share/R/doc/html/R.css -rw-r--r-- root/root 6755 2017-11-30 12:19 ./usr/share/R/doc/html/Rlogo.pdf -rw-r--r-- root/root 2693 2017-11-30 12:19 ./usr/share/R/doc/html/Rlogo.svg -rw-r--r-- root/root 610 2017-11-30 12:19 ./usr/share/R/doc/html/Search.html -rw-r--r-- root/root 7799 2017-11-30 12:19 ./usr/share/R/doc/html/SearchOn.html -rw-r--r-- root/root 1972 2017-11-30 12:19 ./usr/share/R/doc/html/about.html -rw-r--r-- root/root 5430 2017-11-30 12:19 ./usr/share/R/doc/html/favicon.ico -rw-r--r-- root/root 2152 2017-11-30 12:19 ./usr/share/R/doc/html/index.html -rw-r--r-- root/root 1013 2017-11-30 12:19 ./usr/share/R/doc/html/left.jpg -rw-r--r-- root/root 15985 2017-11-30 12:19 ./usr/share/R/doc/html/logo.jpg -rw-r--r-- root/root 425 2017-11-30 12:19 ./usr/share/R/doc/html/packages-head-utf8.html -rw-r--r-- root/root 2946 2017-11-30 12:19 ./usr/share/R/doc/html/packages.html -rw-r--r-- root/root 5111 2017-11-30 12:19 ./usr/share/R/doc/html/resources.html -rw-r--r-- root/root 1022 2017-11-30 12:19 ./usr/share/R/doc/html/right.jpg -rw-r--r-- root/root 1021 2017-11-30 12:19 ./usr/share/R/doc/html/up.jpg drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/doc/manual/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/doc/manual/images/ -rw-r--r-- root/root 5600 2017-11-30 12:19 ./usr/share/R/doc/manual/images/QQ.png -rw-r--r-- root/root 4057 2017-11-30 12:19 ./usr/share/R/doc/manual/images/ecdf.png -rw-r--r-- root/root 2908 2017-11-30 12:19 ./usr/share/R/doc/manual/images/fig11.png -rw-r--r-- root/root 3008 2017-11-30 12:19 ./usr/share/R/doc/manual/images/fig12.png -rw-r--r-- root/root 6876 2017-11-30 12:19 ./usr/share/R/doc/manual/images/hist.png -rw-r--r-- root/root 1772 2017-11-30 12:19 ./usr/share/R/doc/manual/images/ice.png drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/include/ -rw-r--r-- root/root 3413 2017-11-30 12:19 ./usr/share/R/include/R.h drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/include/R_ext/ -rw-r--r-- root/root 5852 2017-11-30 12:19 ./usr/share/R/include/R_ext/Applic.h -rw-r--r-- root/root 2938 2017-11-30 12:19 ./usr/share/R/include/R_ext/Arith.h -rw-r--r-- root/root 17660 2017-11-30 12:19 ./usr/share/R/include/R_ext/BLAS.h -rw-r--r-- root/root 1307 2017-11-30 12:19 ./usr/share/R/include/R_ext/Boolean.h -rw-r--r-- root/root 4208 2017-11-30 12:19 ./usr/share/R/include/R_ext/Callbacks.h -rw-r--r-- root/root 1262 2017-11-30 12:19 ./usr/share/R/include/R_ext/Complex.h -rw-r--r-- root/root 3335 2017-11-30 12:19 ./usr/share/R/include/R_ext/Connections.h -rw-r--r-- root/root 1752 2017-11-30 12:19 ./usr/share/R/include/R_ext/Constants.h -rw-r--r-- root/root 1591 2017-11-30 12:19 ./usr/share/R/include/R_ext/Error.h -rw-r--r-- root/root 1082 2017-11-30 12:19 ./usr/share/R/include/R_ext/GetX11Image.h -rw-r--r-- root/root 30315 2017-11-30 12:19 ./usr/share/R/include/R_ext/GraphicsDevice.h -rw-r--r-- root/root 19330 2017-11-30 12:19 ./usr/share/R/include/R_ext/GraphicsEngine.h -rw-r--r-- root/root 5771 2017-11-30 12:19 ./usr/share/R/include/R_ext/Itermacros.h -rw-r--r-- root/root 124105 2017-11-30 12:19 ./usr/share/R/include/R_ext/Lapack.h -rw-r--r-- root/root 4603 2017-11-30 12:19 ./usr/share/R/include/R_ext/Linpack.h -rw-r--r-- root/root 1577 2017-11-30 12:19 ./usr/share/R/include/R_ext/MathThreads.h -rw-r--r-- root/root 1717 2017-11-30 12:19 ./usr/share/R/include/R_ext/Memory.h -rw-r--r-- root/root 1281 2017-11-30 12:19 ./usr/share/R/include/R_ext/Parse.h -rw-r--r-- root/root 1706 2017-11-30 12:19 ./usr/share/R/include/R_ext/Print.h -rw-r--r-- root/root 2778 2017-11-30 12:19 ./usr/share/R/include/R_ext/PrtUtil.h -rw-r--r-- root/root 10981 2017-11-30 12:19 ./usr/share/R/include/R_ext/QuartzDevice.h -rw-r--r-- root/root 2508 2017-11-30 12:19 ./usr/share/R/include/R_ext/R-ftp-http.h -rw-r--r-- root/root 3553 2017-11-30 12:19 ./usr/share/R/include/R_ext/RS.h -rw-r--r-- root/root 2956 2017-11-30 12:19 ./usr/share/R/include/R_ext/RStartup.h -rw-r--r-- root/root 2010 2017-11-30 12:19 ./usr/share/R/include/R_ext/Rallocators.h -rw-r--r-- root/root 1972 2017-11-30 12:19 ./usr/share/R/include/R_ext/Random.h -rw-r--r-- root/root 3522 2017-11-30 12:19 ./usr/share/R/include/R_ext/Rdynload.h -rw-r--r-- root/root 1548 2017-11-30 12:19 ./usr/share/R/include/R_ext/Riconv.h -rw-r--r-- root/root 4035 2017-11-30 12:19 ./usr/share/R/include/R_ext/Utils.h -rw-r--r-- root/root 1470 2017-11-30 12:19 ./usr/share/R/include/R_ext/Visibility.h -rw-r--r-- root/root 3353 2017-11-30 12:19 ./usr/share/R/include/R_ext/eventloop.h -rw-r--r-- root/root 1769 2017-11-30 12:19 ./usr/share/R/include/R_ext/libextern.h -rw-r--r-- root/root 2819 2017-11-30 12:19 ./usr/share/R/include/R_ext/stats_package.h -rw-r--r-- root/root 3108 2017-11-30 12:19 ./usr/share/R/include/R_ext/stats_stubs.h -rw-r--r-- root/root 669 2017-11-30 12:19 ./usr/share/R/include/Rconfig.h -rw-r--r-- root/root 6758 2017-11-30 12:19 ./usr/share/R/include/Rdefines.h -rw-r--r-- root/root 2075 2017-11-30 12:19 ./usr/share/R/include/Rembedded.h -rw-r--r-- root/root 5456 2017-11-30 12:19 ./usr/share/R/include/Rinterface.h -rw-r--r-- root/root 50009 2017-11-30 12:19 ./usr/share/R/include/Rinternals.h -rw-r--r-- root/root 17985 2017-11-30 12:19 ./usr/share/R/include/Rmath.h -rw-r--r-- root/root 503 2017-11-30 12:19 ./usr/share/R/include/Rversion.h -rw-r--r-- root/root 2593 2017-11-30 12:19 ./usr/share/R/include/S.h drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/R/ -rw-r--r-- root/root 3033 2017-11-30 12:19 ./usr/share/R/share/R/REMOVE.R -rw-r--r-- root/root 273 2017-11-30 12:19 ./usr/share/R/share/R/examples-footer.R -rw-r--r-- root/root 2910 2017-11-30 12:19 ./usr/share/R/share/R/examples-header.R -rw-r--r-- root/root 1056 2017-11-30 12:19 ./usr/share/R/share/R/nspackloader.R -rw-r--r-- root/root 131 2017-11-30 12:19 ./usr/share/R/share/R/tests-startup.R drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/Rd/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/Rd/macros/ -rw-r--r-- root/root 1992 2017-11-30 12:19 ./usr/share/R/share/Rd/macros/system.Rd drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/dictionaries/ -rw-r--r-- root/root 2614 2017-11-30 12:19 ./usr/share/R/share/dictionaries/en_stats.rds drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/encodings/ -rw-r--r-- root/root 74056 2017-11-30 12:19 ./usr/share/R/share/encodings/Adobe-glyphlist -rw-r--r-- root/root 53369 2017-11-30 12:19 ./usr/share/R/share/encodings/character-sets drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/java/ -rw-r--r-- root/root 87 2017-11-30 12:19 ./usr/share/R/share/java/README -rw-r--r-- root/root 1356 2017-11-30 12:19 ./usr/share/R/share/java/getsp.class drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/licenses/ -rw-r--r-- root/root 34525 2017-11-30 12:19 ./usr/share/R/share/licenses/AGPL-3 -rw-r--r-- root/root 9073 2017-11-30 12:19 ./usr/share/R/share/licenses/Artistic-2.0 -rw-r--r-- root/root 1630 2017-11-30 12:19 ./usr/share/R/share/licenses/BSD_2_clause -rw-r--r-- root/root 1844 2017-11-30 12:19 ./usr/share/R/share/licenses/BSD_3_clause -rw-r--r-- root/root 18011 2017-11-30 12:19 ./usr/share/R/share/licenses/GPL-2 -rw-r--r-- root/root 35147 2017-11-30 12:19 ./usr/share/R/share/licenses/GPL-3 -rw-r--r-- root/root 25292 2017-11-30 12:19 ./usr/share/R/share/licenses/LGPL-2 -rw-r--r-- root/root 26432 2017-11-30 12:19 ./usr/share/R/share/licenses/LGPL-2.1 -rw-r--r-- root/root 7639 2017-11-30 12:19 ./usr/share/R/share/licenses/LGPL-3 -rw-r--r-- root/root 1380 2017-11-30 12:19 ./usr/share/R/share/licenses/MIT -rw-r--r-- root/root 9962 2017-11-30 12:19 ./usr/share/R/share/licenses/license.db drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/make/ -rw-r--r-- root/root 6647 2017-11-30 12:19 ./usr/share/R/share/make/basepkg.mk -rw-r--r-- root/root 482 2017-11-30 12:19 ./usr/share/R/share/make/check_vars_ini.mk -rw-r--r-- root/root 812 2017-11-30 12:19 ./usr/share/R/share/make/check_vars_out.mk -rw-r--r-- root/root 86 2017-11-30 12:19 ./usr/share/R/share/make/clean.mk -rw-r--r-- root/root 92 2017-11-30 12:19 ./usr/share/R/share/make/config.mk -rw-r--r-- root/root 785 2017-11-30 12:19 ./usr/share/R/share/make/lazycomp.mk -rw-r--r-- root/root 471 2017-11-30 12:19 ./usr/share/R/share/make/shlib.mk -rw-r--r-- root/root 918 2017-11-30 12:19 ./usr/share/R/share/make/vars.mk -rw-r--r-- root/root 1142 2017-11-30 12:19 ./usr/share/R/share/make/winshlib.mk drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/sh/ -rwxr-xr-x root/root 27 2017-11-30 12:19 ./usr/share/R/share/sh/echo.sh drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/texmf/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/texmf/bibtex/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/texmf/bibtex/bib/ -rw-r--r-- root/root 130459 2017-11-30 12:19 ./usr/share/R/share/texmf/bibtex/bib/RJournal.bib -rw-r--r-- root/root 72374 2017-11-30 12:19 ./usr/share/R/share/texmf/bibtex/bib/Rnews.bib drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/texmf/bibtex/bst/ -rw-r--r-- root/root 32350 2017-11-30 12:19 ./usr/share/R/share/texmf/bibtex/bst/jss.bst drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/texmf/tex/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/R/share/texmf/tex/latex/ -rw-r--r-- root/root 14828 2017-11-30 12:19 ./usr/share/R/share/texmf/tex/latex/Rd.sty -rw-r--r-- root/root 1635 2017-11-30 12:19 ./usr/share/R/share/texmf/tex/latex/Sweave.sty -rw-r--r-- root/root 14804 2017-11-30 12:19 ./usr/share/R/share/texmf/tex/latex/jss.cls -rw-r--r-- root/root 644 2017-11-30 12:19 ./usr/share/R/share/texmf/tex/latex/omsaer.fd -rw-r--r-- root/root 607 2017-11-30 12:19 ./usr/share/R/share/texmf/tex/latex/omsaett.fd -rw-r--r-- root/root 607 2017-11-30 12:19 ./usr/share/R/share/texmf/tex/latex/omscmtt.fd -rw-r--r-- root/root 534 2017-11-30 12:19 ./usr/share/R/share/texmf/tex/latex/ts1aer.fd -rw-r--r-- root/root 299 2017-11-30 12:19 ./usr/share/R/share/texmf/tex/latex/ts1aett.fd drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/applications/ -rw-r--r-- root/root 213 2017-11-30 12:19 ./usr/share/applications/R.desktop drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/bash-completion/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/bash-completion/completions/ -rw-r--r-- root/root 13596 2015-08-05 00:46 ./usr/share/bash-completion/completions/R drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/doc/r-base-core/ -rw-r--r-- root/root 35933 2014-03-12 23:03 ./usr/share/doc/r-base-core/NEWS.0.gz -rw-r--r-- root/root 108753 2014-03-12 23:03 ./usr/share/doc/r-base-core/NEWS.1.gz -rw-r--r-- root/root 96628 2016-03-16 23:04 ./usr/share/doc/r-base-core/NEWS.2.Rd.gz -rw-r--r-- root/root 229656 2014-03-12 23:03 ./usr/share/doc/r-base-core/NEWS.2.gz -rw-r--r-- root/root 92930 2017-11-20 23:15 ./usr/share/doc/r-base-core/NEWS.Rd.gz lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/share/doc/r-base-core/NEWS.gz -> changelog.gz -rw-r--r-- root/root 485724 2017-11-30 12:19 ./usr/share/doc/r-base-core/NEWS.pdf.gz -rw-r--r-- root/root 394961 2017-11-30 12:19 ./usr/share/doc/r-base-core/NEWS.rds.gz -rw-r--r-- root/root 2739 2010-08-05 18:01 ./usr/share/doc/r-base-core/README.Atlas.gz -rw-r--r-- root/root 2107 2016-10-04 09:14 ./usr/share/doc/r-base-core/README.gz -rw-r--r-- root/root 3026 2010-08-05 18:01 ./usr/share/doc/r-base-core/README.mathlib -rw-r--r-- root/root 905 2017-11-30 12:19 ./usr/share/doc/r-base-core/changelog.Debian.gz -rw-r--r-- root/root 20761 2010-08-05 18:01 ./usr/share/doc/r-base-core/copyright lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/share/doc/r-base-core/doc -> ../../R/doc lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/share/doc/r-base-core/library -> ../../../lib/R/library drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/icons/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/icons/hicolor/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/icons/hicolor/48x48/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/icons/hicolor/48x48/apps/ -rw-r--r-- root/root 4111 2017-11-30 12:19 ./usr/share/icons/hicolor/48x48/apps/rlogo_icon.png drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/info/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 7767 2017-10-25 12:27 ./usr/share/lintian/overrides/r-base-core drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/man/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/man/man1/ -rw-r--r-- root/root 2591 2017-11-30 12:19 ./usr/share/man/man1/R.1.gz -rw-r--r-- root/root 659 2017-11-30 12:19 ./usr/share/man/man1/Rscript.1.gz drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/texmf/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/texmf/tex/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/texmf/tex/latex/ lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/share/texmf/tex/latex/R -> ../../../R/share/texmf r-mathlib_3.4.3-1_ppc64el.deb ----------------------------- new debian package, version 2.0. size 1597748 bytes: control archive=2080 bytes. 1841 bytes, 40 lines control 1148 bytes, 17 lines md5sums 369 bytes, 27 lines * postinst #!/bin/sh 21 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: r-mathlib Source: r-base Version: 3.4.3-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Dirk Eddelbuettel Installed-Size: 2408 Depends: libc6 (>= 2.23) Recommends: r-base-core (= 3.4.3-1), r-base-dev (= 3.4.3-1) Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R standalone mathematics library R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the libRmath shared and static libraries which can be called from standalone C or C++ code. drwxr-xr-x root/root 0 2017-11-30 12:19 ./ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/include/ -rw-r--r-- root/root 17985 2017-11-30 12:19 ./usr/include/Rmath.h drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/ -rw-r--r-- root/root 564526 2017-11-30 12:19 ./usr/lib/libRmath.a lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/lib/libRmath.so -> libRmath.so.1 lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0 -rw-r--r-- root/root 264312 2017-11-30 12:19 ./usr/lib/libRmath.so.1.0.0 drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 173 2017-11-30 12:19 ./usr/lib/pkgconfig/libRmath.pc drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/doc/r-mathlib/ -rw-r--r-- root/root 35933 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.0.gz -rw-r--r-- root/root 108753 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.1.gz -rw-r--r-- root/root 96628 2016-03-16 23:04 ./usr/share/doc/r-mathlib/NEWS.2.Rd.gz -rw-r--r-- root/root 229656 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.2.gz -rw-r--r-- root/root 92930 2017-11-20 23:15 ./usr/share/doc/r-mathlib/NEWS.Rd.gz lrwxrwxrwx root/root 0 2017-11-30 12:19 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz -rw-r--r-- root/root 485724 2017-11-30 12:19 ./usr/share/doc/r-mathlib/NEWS.pdf.gz -rw-r--r-- root/root 394961 2017-11-30 12:19 ./usr/share/doc/r-mathlib/NEWS.rds.gz -rw-r--r-- root/root 2107 2016-10-04 09:14 ./usr/share/doc/r-mathlib/README.gz -rw-r--r-- root/root 3026 2010-08-05 18:01 ./usr/share/doc/r-mathlib/README.mathlib -rw-r--r-- root/root 908 2017-11-30 12:19 ./usr/share/doc/r-mathlib/changelog.Debian.gz -rw-r--r-- root/root 20761 2010-08-05 18:01 ./usr/share/doc/r-mathlib/copyright drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/doc/r-mathlib/examples/ -rw-r--r-- root/root 1371 2015-08-25 22:18 ./usr/share/doc/r-mathlib/examples/test.c drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-11-30 12:19 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 278 2017-03-06 11:52 ./usr/share/lintian/overrides/r-mathlib +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 382096 Build-Time: 753 Distribution: bionic-proposed Host Architecture: ppc64el Install-Time: 224 Job: r-base_3.4.3-1.dsc Machine Architecture: ppc64el Package: r-base Package-Time: 979 Source-Version: 3.4.3-1 Space: 382096 Status: successful Version: 3.4.3-1 -------------------------------------------------------------------------------- Finished at 20171130-2308 Build needed 00:16:19, 382096k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13798102 Scanning for processes to kill in build PACKAGEBUILD-13798102 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13798102 Stopping target for build PACKAGEBUILD-13798102 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13798102 Removing build PACKAGEBUILD-13798102