RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux kishi17 3.2.0-84-highbank #121-Ubuntu SMP PREEMPT Tue May 5 19:44:15 UTC 2015 armv7l Buildd toolchain package versions: launchpad-buildd_134 python-lpbuildd_134 sbuild_0.65.2-1ubuntu2~ubuntu12.04.1~ppa6 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.6 python-debian_0.1.27ubuntu1~ubuntu12.04.1~ppa2. Syncing the system clock with the buildd NTP service... 23 Oct 15:18:05 ntpdate[23548]: adjust time server 10.211.37.1 offset -0.000590 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8174527', '/home/buildd/filecache-default/bdf524d1fbccc9606fe3cb203c365489d3f7f335'] Unpacking chroot for build PACKAGEBUILD-8174527 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8174527'] Mounting chroot for build PACKAGEBUILD-8174527 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8174527', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8174527 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8174527', 'armhf'] Updating debian chroot for build PACKAGEBUILD-8174527 Get:1 http://ftpmaster.internal xenial InRelease [218 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [64.4 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [64.4 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [64.4 kB] Get:5 http://ftpmaster.internal xenial/main armhf Packages [1387 kB] Get:6 http://ftpmaster.internal xenial/universe armhf Packages [6581 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [839 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4579 kB] Get:9 http://ftpmaster.internal xenial-security/main armhf Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe armhf Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main armhf Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe armhf Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main armhf Packages [51.6 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe armhf Packages [68.4 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [29.6 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [50.7 kB] Fetched 14.0 MB in 17s (798 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libgcc-5-dev libgcc1 libgomp1 libstdc++-5-dev libstdc++6 libubsan0 pkg-create-dbgsym 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 82.3 MB of archives. After this operation, 249 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial-proposed/main base-files armhf 9.4ubuntu2 [63.7 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libubsan0 armhf 5.2.1-22ubuntu4 [88.7 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial-proposed/main gcc-5-base armhf 5.2.1-22ubuntu4 [16.6 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libstdc++6 armhf 5.2.1-22ubuntu4 [350 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgomp1 armhf 5.2.1-22ubuntu4 [50.2 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libatomic1 armhf 5.2.1-22ubuntu4 [6022 B] Get:7 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libasan2 armhf 5.2.1-22ubuntu4 [243 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial-proposed/main cpp-5 armhf 5.2.1-22ubuntu4 [23.7 MB] Get:9 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libcc1-0 armhf 5.2.1-22ubuntu4 [26.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial-proposed/main binutils armhf 2.25.51.20151022-0ubuntu1 [2319 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial-proposed/main g++-5 armhf 5.2.1-22ubuntu4 [29.7 MB] Get:12 http://ftpmaster.internal/ubuntu/ xenial-proposed/main gcc-5 armhf 5.2.1-22ubuntu4 [23.8 MB] Get:13 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcc-5-dev armhf 5.2.1-22ubuntu4 [476 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libstdc++-5-dev armhf 5.2.1-22ubuntu4 [1462 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcc1 armhf 1:5.2.1-22ubuntu4 [38.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial-proposed/main pkg-create-dbgsym all 0.70 [9046 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.3 MB in 11s (7210 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11455 files and directories currently installed.) Preparing to unpack .../base-files_9.4ubuntu2_armhf.deb ... Unpacking base-files (9.4ubuntu2) over (7.2ubuntu11) ... Setting up base-files (9.4ubuntu2) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. Updating /etc/nsswitch.conf to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11457 files and directories currently installed.) Preparing to unpack .../libubsan0_5.2.1-22ubuntu4_armhf.deb ... Unpacking libubsan0:armhf (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Preparing to unpack .../gcc-5-base_5.2.1-22ubuntu4_armhf.deb ... Unpacking gcc-5-base:armhf (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Setting up gcc-5-base:armhf (5.2.1-22ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11457 files and directories currently installed.) Preparing to unpack .../libstdc++6_5.2.1-22ubuntu4_armhf.deb ... Unpacking libstdc++6:armhf (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Setting up libstdc++6:armhf (5.2.1-22ubuntu4) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11457 files and directories currently installed.) Preparing to unpack .../libgomp1_5.2.1-22ubuntu4_armhf.deb ... Unpacking libgomp1:armhf (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libatomic1_5.2.1-22ubuntu4_armhf.deb ... Unpacking libatomic1:armhf (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libasan2_5.2.1-22ubuntu4_armhf.deb ... Unpacking libasan2:armhf (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Preparing to unpack .../cpp-5_5.2.1-22ubuntu4_armhf.deb ... Unpacking cpp-5 (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libcc1-0_5.2.1-22ubuntu4_armhf.deb ... Unpacking libcc1-0:armhf (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Preparing to unpack .../binutils_2.25.51.20151022-0ubuntu1_armhf.deb ... Unpacking binutils (2.25.51.20151022-0ubuntu1) over (2.25.1-6ubuntu1) ... Preparing to unpack .../g++-5_5.2.1-22ubuntu4_armhf.deb ... Unpacking g++-5 (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Preparing to unpack .../gcc-5_5.2.1-22ubuntu4_armhf.deb ... Unpacking gcc-5 (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libgcc-5-dev_5.2.1-22ubuntu4_armhf.deb ... Unpacking libgcc-5-dev:armhf (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libstdc++-5-dev_5.2.1-22ubuntu4_armhf.deb ... Unpacking libstdc++-5-dev:armhf (5.2.1-22ubuntu4) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libgcc1_1%3a5.2.1-22ubuntu4_armhf.deb ... Unpacking libgcc1:armhf (1:5.2.1-22ubuntu4) over (1:5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Setting up libgcc1:armhf (1:5.2.1-22ubuntu4) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11454 files and directories currently installed.) Preparing to unpack .../pkg-create-dbgsym_0.70_all.deb ... Unpacking pkg-create-dbgsym (0.70) over (0.69) ... Setting up libubsan0:armhf (5.2.1-22ubuntu4) ... Setting up libgomp1:armhf (5.2.1-22ubuntu4) ... Setting up libatomic1:armhf (5.2.1-22ubuntu4) ... Setting up libasan2:armhf (5.2.1-22ubuntu4) ... Setting up cpp-5 (5.2.1-22ubuntu4) ... Setting up libcc1-0:armhf (5.2.1-22ubuntu4) ... Setting up binutils (2.25.51.20151022-0ubuntu1) ... Setting up libgcc-5-dev:armhf (5.2.1-22ubuntu4) ... Setting up gcc-5 (5.2.1-22ubuntu4) ... Setting up libstdc++-5-dev:armhf (5.2.1-22ubuntu4) ... Setting up g++-5 (5.2.1-22ubuntu4) ... Setting up pkg-create-dbgsym (0.70) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8174527', 'armhf', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=armhf', '--dist=xenial-proposed', '--purge=never', '--nolog', 'python-cogent_1.5.3-3.dsc'] Initiating build PACKAGEBUILD-8174527 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.2.0-84-highbank #121-Ubuntu SMP PREEMPT Tue May 5 19:44:15 UTC 2015 armv7l sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on kishi17.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ python-cogent 1.5.3-3 (armhf) 23 Oct 2015 15:19 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: python-cogent Version: 1.5.3-3 Source Version: 1.5.3-3 Distribution: xenial-proposed Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/python-cogent-gKBtfK/python-cogent-1.5.3' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/python-cogent-gKBtfK' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8174527/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── python-cogent_1.5.3-3.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-r1IXz3/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11454 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, python-all-dev, python-numpy, python-sphinx, cython, blast2, bwa, cd-hit, clearcut, clustalw, dialign, infernal, mafft, mothur, muscle, parsinsert, raxml, rtax Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, python-all-dev, python-numpy, python-sphinx, cython, blast2, bwa, cd-hit, clearcut, clustalw, dialign, infernal, mafft, mothur, muscle, parsinsert, raxml, rtax dpkg-deb: building package 'sbuild-build-depends-python-cogent-dummy' in '/«BUILDDIR»/resolver-ESgYQn/apt_archive/sbuild-build-depends-python-cogent-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install python-cogent build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-python-cogent-dummy : Depends: bwa but it is not installable Depends: infernal but it is not installable Depends: raxml but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. Package installation failed Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11454 files and directories currently installed.) Removing sbuild-build-depends-core-dummy (0.invalid.0) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: E: Package build dependencies not satisfied; skipping ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 0 Build-Time: 0 Distribution: xenial-proposed Fail-Stage: install-deps Host Architecture: armhf Install-Time: 0 Job: python-cogent_1.5.3-3.dsc Machine Architecture: armhf Package: python-cogent Package-Time: 0 Source-Version: 1.5.3-3 Space: 0 Status: failed Version: 1.5.3-3 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151023-1519 Build needed 00:00:00, 0k disc space E: Package build dependencies not satisfied; skipping RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8174527'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8174527/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8174527'] Unmounting chroot for build PACKAGEBUILD-8174527... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8174527'] Removing build PACKAGEBUILD-8174527