Ubuntu
python-bx package

python-bx 0.10.0-1 source package in Ubuntu

Changelog

python-bx (0.10.0-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)

 -- Andreas Tille <email address hidden>  Fri, 10 Nov 2023 15:13:00 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
python-bx_0.10.0-1.dsc 2.2 KiB d59ae6581b2395637c0a15b010ff2de6d6265a27cd218460a0c9b464c0af3323
python-bx_0.10.0.orig.tar.gz 1.6 MiB 76c58c85aff6a3b4e2a63e2634c5687a837ba77083209a96d7373f270b2905fd
python-bx_0.10.0-1.debian.tar.xz 11.7 KiB 4ea002f0c44cb8040d3651c9ae7cc76a285ff894ac17ebda8c7c803a4b753fc4

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Binary packages built by this source

python3-bx: library to manage genomic data and its alignment

 The bx-python project is a Python3 library and associated set of scripts to
 allow for rapid implementation of genome scale analyses. The library contains
 a variety of useful modules, but the particular strengths are:
  * Classes for reading and working with genome-scale multiple local
    alignments (in MAF, AXT, and LAV formats)
  * Generic data structure for indexing on disk files that contain blocks of
    data associated with intervals on various sequences (used, for example, to
    provide random access to individual alignments in huge files; optimized
    for use over network filesystems)
  * Data structures for working with intervals on sequences
  * "Binned bitsets" which act just like chromosome sized bit arrays, but
    lazily allocate regions and allow large blocks of all set or all unset
    bits to be stored compactly
  * "Intersecter" for performing fast intersection tests that preserve both
    query and target intervals and associated annotation

python3-bx-dbgsym: debug symbols for python3-bx