https://launchpad.net/ubuntu/+source/prody/2.4.1+dfsg-2/+build/27776639 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-018 5.4.0-171-generic #189-Ubuntu SMP Fri Jan 5 14:23:34 UTC 2024 aarch64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 15 Feb 13:07:10 ntpdate[1827]: adjust time server 10.211.37.1 offset 0.001003 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27776639 --image-type chroot /home/buildd/filecache-default/59612f0fc5bae33f6226b6e60c2e882b82c04bd0 Creating target for build PACKAGEBUILD-27776639 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27776639 Starting target for build PACKAGEBUILD-27776639 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27776639 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27776639 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27776639 Updating target for build PACKAGEBUILD-27776639 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf Packages [1351 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [519 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe armhf Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6017 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [185 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [66.8 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [729 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [262 kB] Fetched 24.0 MB in 9s (2756 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.36 libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-14-base gcc-arm-linux-gnueabihf libperl5.38 libunistring5 perl-modules-5.38 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-arm-linux-gnueabihf binutils-common bsdextrautils bsdutils ca-certificates coreutils cpp cpp-13 debconf debconf-i18n debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers krb5-locales libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps psmisc readline-common sed systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 149 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After this operation, 46.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main armhf libnsl-dev armhf 1.3.0-3 [65.8 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt-dev armhf 1:4.4.36-4 [136 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6-dev armhf 2.39-0ubuntu1 [1352 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-dev-bin armhf 2.39-0ubuntu1 [19.1 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf libtirpc-common all 1.3.4+ds-1build1 [8566 B] Get:6 http://ftpmaster.internal/ubuntu noble/main armhf libtirpc-dev armhf 1.3.4+ds-1build1 [207 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libgssapi-krb5-2 armhf 1.20.1-5build1 [118 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libkrb5-3 armhf 1.20.1-5build1 [320 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main armhf libk5crypto3 armhf 1.20.1-5build1 [78.6 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main armhf libkrb5support0 armhf 1.20.1-5build1 [31.3 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libssl3 armhf 3.0.10-1ubuntu4 [1553 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libtirpc3 armhf 1.3.4+ds-1build1 [81.0 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libnsl2 armhf 1.3.0-3 [35.9 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt1 armhf 1:4.4.36-4 [104 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-libc-dev armhf 6.8.0-7.7 [1553 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6 armhf 2.39-0ubuntu1 [2830 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-bin armhf 2.39-0ubuntu1 [528 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main armhf gcc-14-base armhf 14-20240201-3ubuntu1 [46.4 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main armhf libgcc-s1 armhf 14-20240201-3ubuntu1 [41.5 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main armhf base-files armhf 13ubuntu6 [84.0 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main armhf debianutils armhf 5.16 [93.1 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main armhf bash armhf 5.2.21-2ubuntu1 [673 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main armhf bsdutils armhf 1:2.39.2-6ubuntu1 [99.5 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-2ubuntu3 [1312 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main armhf diffutils armhf 1:3.10-1 [167 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error-l10n all 1.47-3build1 [8024 B] Get:27 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error0 armhf 1.47-3build1 [61.6 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main armhf libgcrypt20 armhf 1.10.3-2 [454 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main armhf liblzma5 armhf 5.4.5-0.3 [120 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main armhf libstdc++6 armhf 14-20240201-3ubuntu1 [714 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main armhf libacl1 armhf 2.3.1-4ubuntu1 [16.2 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0~alpha4-0ubuntu1 [44.4 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libaudit-common all 1:3.1.2-2 [5594 B] Get:34 http://ftpmaster.internal/ubuntu noble/main armhf libcap-ng0 armhf 0.8.4-1 [14.5 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main armhf libaudit1 armhf 1:3.1.2-2 [44.2 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main armhf libblkid1 armhf 2.39.2-6ubuntu1 [159 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libzstd1 armhf 1.5.5+dfsg2-2 [265 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libkmod2 armhf 30+20230601-2ubuntu1 [43.9 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-8-0 armhf 10.42-4ubuntu1 [198 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main armhf libselinux1 armhf 3.5-2build1 [70.3 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main armhf libmount1 armhf 2.39.2-6ubuntu1 [171 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main armhf perl-modules-5.38 all 5.38.2-3 [3110 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libperl5.38 armhf 5.38.2-3 [4105 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main armhf perl armhf 5.38.2-3 [231 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main armhf perl-base armhf 5.38.2-3 [1670 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main armhf liblocale-gettext-perl armhf 1.07-6build1 [14.8 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main armhf libtext-iconv-perl armhf 1.7-8build1 [12.6 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main armhf libtext-charwidth-perl armhf 0.04-11build1 [8894 B] Get:49 http://ftpmaster.internal/ubuntu noble/main armhf perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main armhf libperl5.36 armhf 5.36.0-10ubuntu1 [4019 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main armhf libdb5.3 armhf 5.3.28+dfsg2-4 [652 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main armhf libgdbm6 armhf 1.23-5 [29.8 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main armhf libgdbm-compat4 armhf 1.23-5 [5970 B] Get:54 http://ftpmaster.internal/ubuntu noble/main armhf zlib1g armhf 1:1.3.dfsg-3ubuntu1 [50.6 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main armhf debconf-i18n all 1.5.86 [205 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf debconf all 1.5.86 [124 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main armhf libpam0g armhf 1.5.2-9.1ubuntu2 [60.2 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main armhf libseccomp2 armhf 2.5.5-1ubuntu1 [49.4 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main armhf systemd-sysv armhf 255.2-3ubuntu2 [11.9 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main armhf systemd-dev all 255.2-3ubuntu2 [101 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main armhf systemd armhf 255.2-3ubuntu2 [3495 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main armhf libsystemd-shared armhf 255.2-3ubuntu2 [2006 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main armhf libargon2-1 armhf 0~20190702+dfsg-4 [22.3 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main armhf libuuid1 armhf 2.39.2-6ubuntu1 [33.4 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main armhf libcryptsetup12 armhf 2:2.6.1-6ubuntu1 [216 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main armhf libfdisk1 armhf 2.39.2-6ubuntu1 [195 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main armhf mount armhf 2.39.2-6ubuntu1 [132 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main armhf libsystemd0 armhf 255.2-3ubuntu2 [408 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main armhf libudev1 armhf 255.2-3ubuntu2 [164 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main armhf libxxhash0 armhf 0.8.2-2 [31.3 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0 armhf 2.7.11 [994 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main armhf tar armhf 1.35+dfsg-3 [236 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.4ubuntu2 [1230 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main armhf grep armhf 3.11-4 [166 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main armhf login armhf 1:4.13+dfsg1-3ubuntu1 [200 kB] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ncurses-bin armhf 6.4+20240113-1 [178 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main armhf sed armhf 4.9-2 [198 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main armhf util-linux armhf 2.39.2-6ubuntu1 [1211 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main armhf libdebconfclient0 armhf 0.271ubuntu1 [10.8 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main armhf base-passwd armhf 3.6.3 [51.0 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main armhf init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ncurses-base all 6.4+20240113-1 [25.4 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main armhf sysvinit-utils armhf 3.08-3ubuntu1 [33.4 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.11 [1363 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.11 [211 kB] Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu2 [222 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main armhf libffi8 armhf 3.4.4-2 [20.8 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main armhf libp11-kit0 armhf 0.25.3-4ubuntu1 [258 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main armhf libunistring5 armhf 1.1-2 [512 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main armhf libidn2-0 armhf 2.3.7-2 [96.1 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main armhf libgnutls30 armhf 3.8.3-1ubuntu1 [939 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules-bin armhf 1.5.2-9.1ubuntu2 [43.6 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules armhf 1.5.2-9.1ubuntu2 [265 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main armhf init armhf 1.66ubuntu1 [6186 B] Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libsmartcols1 armhf 2.39.2-6ubuntu1 [116 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main armhf uuid-runtime armhf 2.39.2-6ubuntu1 [40.7 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main armhf libattr1 armhf 1:2.5.2-1 [10.3 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main armhf libmd0 armhf 1.1.0-2 [23.1 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main armhf libpam-runtime all 1.5.2-9.1ubuntu2 [40.6 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main armhf libsemanage-common all 3.5-1build2 [10.0 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main armhf libsepol2 armhf 3.5-2 [262 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main armhf libsemanage2 armhf 3.5-1build2 [84.3 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libncursesw6 armhf 6.4+20240113-1 [118 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtinfo6 armhf 6.4+20240113-1 [90.6 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main armhf passwd armhf 1:4.13+dfsg1-3ubuntu1 [817 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main armhf g++-13 armhf 13.2.0-13ubuntu1 [14.0 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13 armhf 13.2.0-13ubuntu1 [443 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main armhf cpp-13 armhf 13.2.0-13ubuntu1 [1032 B] Get:110 http://ftpmaster.internal/ubuntu noble/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-13ubuntu1 [8754 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main armhf libcc1-0 armhf 14-20240201-3ubuntu1 [39.1 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main armhf libctf0 armhf 2.42-2ubuntu1 [87.6 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main armhf libctf-nobfd0 armhf 2.42-2ubuntu1 [87.7 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main armhf libsframe1 armhf 2.42-2ubuntu1 [12.8 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main armhf binutils-arm-linux-gnueabihf armhf 2.42-2ubuntu1 [2924 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main armhf libbinutils armhf 2.42-2ubuntu1 [460 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main armhf binutils armhf 2.42-2ubuntu1 [3080 B] Get:118 http://ftpmaster.internal/ubuntu noble/main armhf binutils-common armhf 2.42-2ubuntu1 [216 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main armhf libstdc++-13-dev armhf 13.2.0-13ubuntu1 [2401 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main armhf libgomp1 armhf 14-20240201-3ubuntu1 [124 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main armhf libatomic1 armhf 14-20240201-3ubuntu1 [7802 B] Get:122 http://ftpmaster.internal/ubuntu noble/main armhf libasan8 armhf 14-20240201-3ubuntu1 [2938 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main armhf libubsan1 armhf 14-20240201-3ubuntu1 [1151 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main armhf libgcc-13-dev armhf 13.2.0-13ubuntu1 [901 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-13ubuntu1 [16.8 MB] Get:126 http://ftpmaster.internal/ubuntu noble/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-13ubuntu1 [9933 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13-base armhf 13.2.0-13ubuntu1 [46.6 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main armhf libproc2-0 armhf 2:4.0.4-2ubuntu1 [49.6 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main armhf mawk armhf 1.3.4.20240123-1 [115 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main armhf procps armhf 2:4.0.4-2ubuntu1 [699 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main armhf openssl armhf 3.0.10-1ubuntu4 [973 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main armhf ca-certificates all 20240203 [159 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main armhf krb5-locales all 1.20.1-5build1 [13.7 kB] Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libip4tc2 armhf 1.8.10-3ubuntu1 [21.2 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main armhf readline-common all 8.2-3 [56.2 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main armhf libreadline8 armhf 8.2-3 [129 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main armhf libsqlite3-0 armhf 3.45.1-1 [590 kB] Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tzdata all 2024a-1ubuntu1 [273 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main armhf bash-completion all 1:2.11-8 [180 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main armhf bsdextrautils armhf 2.39.2-6ubuntu1 [77.7 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main armhf libpng16-16 armhf 1.6.42-1 [166 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main armhf psmisc armhf 23.6-2 [176 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main armhf xz-utils armhf 5.4.5-0.3 [274 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B] Get:145 http://ftpmaster.internal/ubuntu noble/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B] Get:146 http://ftpmaster.internal/ubuntu noble/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B] Get:148 http://ftpmaster.internal/ubuntu noble/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B] Get:149 http://ftpmaster.internal/ubuntu noble/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B] Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.4ubuntu2 [1078 kB] Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.4ubuntu2 [269 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main armhf lto-disabled-list all 46 [12.3 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main armhf libfakeroot armhf 1.33-1 [28.7 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main armhf fakeroot armhf 1.33-1 [68.6 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main armhf pinentry-curses armhf 1.2.1-3ubuntu1 [36.4 kB] Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu2 [523 kB] Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu2 [115 kB] Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu2 [236 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main armhf optipng armhf 0.7.8+ds-1 [109 kB] Preconfiguring packages ... 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Current default time zone: 'Etc/UTC' Local time is now: Thu Feb 15 13:08:41 UTC 2024. Universal Time is now: Thu Feb 15 13:08:41 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up perl-modules-5.36 (5.36.0-10ubuntu1) ... Setting up gcc-13-base:armhf (13.2.0-13ubuntu1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.4.5-0.3) ... Setting up perl-modules-5.38 (5.38.2-3) ... Setting up libproc2-0:armhf (2:4.0.4-2ubuntu1) ... Setting up libpng16-16:armhf (1.6.42-1) ... Setting up libatomic1:armhf (14-20240201-3ubuntu1) ... Setting up libncursesw6:armhf (6.4+20240113-1) ... Setting up libk5crypto3:armhf (1.20.1-5build1) ... Setting up libubsan1:armhf (14-20240201-3ubuntu1) ... Setting up uuid-runtime (2.39.2-6ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:armhf (1:4.4.36-4) ... Setting up libasan8:armhf (14-20240201-3ubuntu1) ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27776639 armhf noble-proposed -c chroot:build-PACKAGEBUILD-27776639 --arch=armhf --dist=noble-proposed --nolog prody_2.4.1+dfsg-2.dsc Initiating build PACKAGEBUILD-27776639 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-171-generic #189-Ubuntu SMP Fri Jan 5 14:23:34 UTC 2024 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-018.buildd +==============================================================================+ | prody 2.4.1+dfsg-2 (armhf) Thu, 15 Feb 2024 13:08:55 +0000 | +==============================================================================+ Package: prody Version: 2.4.1+dfsg-2 Source Version: 2.4.1+dfsg-2 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27776639/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/prody-mrMXWl/resolver-nt5DX4' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- prody_2.4.1+dfsg-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/prody-mrMXWl/prody-2.4.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/prody-mrMXWl' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-biopython, python3-numpy, python3-pyparsing, python3-scipy, python3-setuptools, python3-zombie-imp, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-biopython, python3-numpy, python3-pyparsing, python3-scipy, python3-setuptools, python3-zombie-imp, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [437 B] Get:5 copy:/<>/apt_archive ./ Packages [507 B] Fetched 1901 B in 0s (45.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu74 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libmagic-mgc libmagic1 libopenjp2-7 libpipeline1 libpixman-1-0 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libraqm0 libsharpyuv0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1 m4 man-db media-types netbase po-debconf python3 python3-all python3-all-dev python3-biopython python3-cairo python3-chardet python3-decorator python3-dev python3-distutils python3-freetype python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-pyparsing python3-reportlab python3-rlpycairo python3-scipy python3-setuptools python3-zombie-imp python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff low-memory-monitor liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise gfortran python3-pytest python-pil-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python-setuptools-doc python3.11-venv python3.11-doc binfmt-support python3.12-venv python3.12-doc sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl python-biopython-doc ncbi-blast+ python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu74 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libmagic-mgc libmagic1 libopenjp2-7 libpipeline1 libpixman-1-0 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libraqm0 libsharpyuv0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1 m4 man-db media-types netbase po-debconf python3 python3-all python3-all-dev python3-biopython python3-cairo python3-chardet python3-decorator python3-dev python3-distutils python3-freetype python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-pyparsing python3-reportlab python3-rlpycairo python3-scipy python3-setuptools python3-zombie-imp python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. 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Unpacking python3-scipy (1.10.1-10build1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../117-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libgraphite2-3:armhf (1.3.14-2) ... Setting up liblcms2-2:armhf (2.14-2) ... Setting up libpixman-1-0:armhf (0.42.2-1) ... Setting up libsharpyuv0:armhf (1.3.2-0.3) ... Setting up libxau6:armhf (1:1.0.9-1build5) ... Setting up liblerc4:armhf (4.0.0+ds-4ubuntu1) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.79.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.13ubuntu1) ... Setting up libbrotli1:armhf (1.1.0-2) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:armhf (1:5.45-2) ... Setting up libdeflate0:armhf (1.19-1) ... Setting up gettext-base (0.21-14ubuntu1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2) ... Setting up libjbig0:armhf (2.1-6.1ubuntu1) ... Setting up libfontenc1:armhf (1:1.1.4-1build3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libexpat1-dev:armhf (2.6.0-1) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:armhf (1.0.13-3) ... Setting up libimagequant0:armhf (2.18.0-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up autopoint (0.21-14ubuntu1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... Setting up libgfortran5:armhf (14-20240201-3ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.3.2-0.3) ... Setting up libicu74:armhf (74.2-1ubuntu1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3ubuntu1) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up libuchardet0:armhf (0.0.8-1) ... Setting up libopenjp2-7:armhf (2.5.0-2) ... Setting up libsub-override-perl (0.10-1) ... Setting up libharfbuzz0b:armhf (8.3.0-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libpython3.11-minimal:armhf (3.11.8-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libwebpmux3:armhf (1.3.2-0.3) ... Setting up libbsd0:armhf (0.11.8-1) ... Setting up libelf1:armhf (0.190-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3build3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libjpeg8:armhf (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.11-minimal (3.11.8-1) ... Setting up libdw1:armhf (0.190-1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu5) ... Setting up liblapack3:armhf (3.12.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-14ubuntu1) ... Setting up libpython3.12-stdlib:armhf (3.12.2-1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up fontconfig-config (2.14.2-6ubuntu1) ... Setting up libwebpdemux2:armhf (1.3.2-0.3) ... Setting up libpython3.11-stdlib:armhf (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libraqm0:armhf (0.10.1-1) ... Setting up libjs-sphinxdoc (7.2.6-3) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:armhf (4.5.1+git230720-3ubuntu1) ... Setting up xml-core (0.19) ... Setting up debugedit (1:5.0-5) ... Setting up libx11-6:armhf (2:1.8.7-1) ... Setting up libfontconfig1:armhf (2.14.2-6ubuntu1) ... Setting up libpython3.12:armhf (3.12.2-1) ... Setting up libpython3-stdlib:armhf (3.12.1-0ubuntu1) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1) ... Setting up python3.11 (3.11.8-1) ... Setting up libpython3.11:armhf (3.11.8-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:armhf (2:1.3.4-1build1) ... Setting up python3 (3.12.1-0ubuntu1) ... Setting up libpython3.12-dev:armhf (3.12.2-1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-freetype (2.4.0-1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libcairo2:armhf (1.18.0-1) ... Setting up python3-pil:armhf (10.2.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up libpython3.11-dev:armhf (3.11.8-1) ... Setting up python3.12-dev (3.12.2-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-zombie-imp (0.0.2-2) ... Setting up libpython3-dev:armhf (3.12.1-0ubuntu1) ... Setting up python3-cairo (1.25.1-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3.11-dev (3.11.8-1) ... Setting up python3-all (3.12.1-0ubuntu1) ... Setting up debhelper (13.13ubuntu1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up libpython3-all-dev:armhf (3.12.1-0ubuntu1) ... Setting up python3-dev (3.12.1-0ubuntu1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-reportlab (4.0.9-1) ... Setting up dh-python (6.20231223) ... Setting up python3-all-dev (3.12.1-0ubuntu1) ... Setting up python3-scipy (1.10.1-10build1) ... Processing triggers for libc-bin (2.39-0ubuntu1) ... Processing triggers for systemd (255.2-3ubuntu2) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-171-generic #189-Ubuntu SMP Fri Jan 5 14:23:34 UTC 2024 arm64 (armv7l) Toolchain package versions: binutils_2.42-2ubuntu1 dpkg-dev_1.22.4ubuntu2 g++-13_13.2.0-13ubuntu1 gcc-13_13.2.0-13ubuntu1 libc6-dev_2.39-0ubuntu1 libstdc++-13-dev_13.2.0-13ubuntu1 libstdc++6_14-20240201-3ubuntu1 linux-libc-dev_6.8.0-7.7 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.11 apt-utils_2.7.11 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu6 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.42-2ubuntu1 binutils-arm-linux-gnueabihf_2.42-2ubuntu1 binutils-common_2.42-2ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20240203 coreutils_9.4-2ubuntu3 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-13ubuntu1 cpp-13-arm-linux-gnueabihf_13.2.0-13ubuntu1 cpp-arm-linux-gnueabihf_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.13ubuntu1 debianutils_5.16 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_6.20231223 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.4ubuntu2 dpkg-dev_1.22.4ubuntu2 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.14.2-6ubuntu1 fonts-dejavu-core_2.37-8 fonts-dejavu-extra_2.37-8 fonts-dejavu-mono_2.37-8 fonts-urw-base35_20200910-7 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-13ubuntu1 g++-13-arm-linux-gnueabihf_13.2.0-13ubuntu1 g++-arm-linux-gnueabihf_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-13ubuntu1 gcc-13-arm-linux-gnueabihf_13.2.0-13ubuntu1 gcc-13-base_13.2.0-13ubuntu1 gcc-14-base_14-20240201-3ubuntu1 gcc-arm-linux-gnueabihf_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu1 gettext-base_0.21-14ubuntu1 gpg_2.4.4-2ubuntu2 gpg-agent_2.4.4-2ubuntu2 gpgconf_2.4.4-2ubuntu2 gpgv_2.4.4-2ubuntu2 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-5build1 libacl1_2.3.1-4ubuntu1 libapparmor1_4.0.0~alpha4-0ubuntu1 libapt-pkg6.0_2.7.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_14-20240201-3ubuntu1 libassuan0_2.5.6-1 libatomic1_14-20240201-3ubuntu1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2 libaudit1_1:3.1.2-2 libbinutils_2.42-2ubuntu1 libblas3_3.12.0-2 libblkid1_2.39.2-6ubuntu1 libbrotli1_1.1.0-2 libbsd0_0.11.8-1 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libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.3-0ubuntu5 libxext6_2:1.3.4-1build1 libxml2_2.9.14+dfsg-1.3build3 libxrender1_1:0.9.10-1.1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.0-7.7 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-3ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_46 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-3 mawk_1.3.4.20240123-1 media-types_10.1.0 mount_2.39.2-6ubuntu1 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 netbase_6.4 openssl_3.0.10-1ubuntu4 optipng_0.7.8+ds-1 passwd_1:4.13+dfsg1-3ubuntu1 patch_2.7.6-7build2 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.36_5.36.0-10ubuntu1 perl-modules-5.38_5.38.2-3 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-2ubuntu1 psmisc_23.6-2 python3_3.12.1-0ubuntu1 python3-all_3.12.1-0ubuntu1 python3-all-dev_3.12.1-0ubuntu1 python3-biopython_1.81+dfsg-3 python3-cairo_1.25.1-2 python3-chardet_5.2.0+dfsg-1 python3-decorator_5.1.1-5 python3-dev_3.12.1-0ubuntu1 python3-distutils_3.11.5-1 python3-freetype_2.4.0-1 python3-lib2to3_3.11.5-1 python3-minimal_3.12.1-0ubuntu1 python3-numpy_1:1.24.2-2 python3-pil_10.2.0-1 python3-pkg-resources_68.1.2-2 python3-pyparsing_3.1.1-1 python3-reportlab_4.0.9-1 python3-rlpycairo_0.3.0-3 python3-scipy_1.10.1-10build1 python3-setuptools_68.1.2-2 python3-zombie-imp_0.0.2-2 python3.11_3.11.8-1 python3.11-dev_3.11.8-1 python3.11-minimal_3.11.8-1 python3.12_3.12.2-1 python3.12-dev_3.12.2-1 python3.12-minimal_3.12.2-1 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sgml-base_1.31 systemd_255.2-3ubuntu2 systemd-dev_255.2-3ubuntu2 systemd-sysv_255.2-3ubuntu2 sysvinit-utils_3.08-3ubuntu1 tar_1.35+dfsg-3 tzdata_2024a-1ubuntu1 ubuntu-keyring_2023.11.28.1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23ubuntu2 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xml-core_0.19 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: prody Binary: python3-prody, python3-prody-tests Architecture: any all Version: 2.4.1+dfsg-2 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://github.com/prody/ProDy Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/prody Vcs-Git: https://salsa.debian.org/debichem-team/prody.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-biopython , python3-numpy, python3-pyparsing , python3-scipy , python3-setuptools, python3-zombie-imp Package-List: python3-prody deb science optional arch=any python3-prody-tests deb science optional arch=all Checksums-Sha1: 9d0ead7d3fce8424a0c35a2396639566d5ebea77 16085288 prody_2.4.1+dfsg.orig.tar.xz 8197a08210bb98599434307c0619ecfaa172cb91 9728 prody_2.4.1+dfsg-2.debian.tar.xz Checksums-Sha256: f66b7affa47693dd3d8cf0f0ac833c4d313135420b1e6ece0767259099f5ad87 16085288 prody_2.4.1+dfsg.orig.tar.xz 0579e775804f9943152c3885561b5fcac4ed2c27557f32e6f20866a4d7c465e4 9728 prody_2.4.1+dfsg-2.debian.tar.xz Files: 295e44486fd6cb8cbe38f64aad51439e 16085288 prody_2.4.1+dfsg.orig.tar.xz b0b64099072b904019ec3863f8cf0801 9728 prody_2.4.1+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmXLF8QSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHJOYP/26FvLav1XZ1RkFUEwcX3U3CbXGw4asp U2QemYIXOfBoCAS7wuiWBDy/tzvjsp3he5V6jfM8x9DmHniyU7YSfeszZ6ogQR2m gsjCa+saWm93F5/I28ZQgY7soUCITQp3kdvMPJZO1fDr4CstwY42iBUxVO/X3k3R EqtERe8UkGwo5NLB9tu82KviG3IOni5IOeRpNUeZoSmdRMdssqmS8de+g+wBkvC5 L/A9bz2FPSLxG7UHGZlUuL5gKWEnCEsXmGVrzHZRr1/eqgnqRplr2M96tWolnoEy GytOsGn4pOA5XvPO2E/ZcCyKGQa3N8qVZl9/Az+JHxdgAEIHjWjEyRMBlXMQDwnA t8CHNsbXYmTjbvREQrPok3AbUQ7Wx7Q0M0HWsZDYDKqtD1FmNqu5avKhPgu7PSst wG9BCPfeM/+PBoRXjQcUhJ7PkkdGNwJ8XQLyli3qFaexeFAHFdKKXqFlc0V17zVU YNYyMcprmT/Nx+b1phYxFxQi3RKSai8FsWQlZJvTjfA5/VeGxOnPNS5gByWMQDrD 6asxG4WlZEt+DPTPx0jhj+jXfNhmH+sdqZTYhLsTEgI+2NrUqI6Dv/6WCghtj+g9 bRT0Mi3LjCqMSaS/cJ8sGkoHn7SlIvNPRtB2jTnzkSmGCPiAPFCRGx4hXqJma0Xp Yj+AfNx5Kb8D =NqP7 -----END PGP SIGNATURE----- gpgv: Signature made Tue Feb 13 07:18:28 2024 UTC gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./prody_2.4.1+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting prody in /<> dpkg-source: info: unpacking prody_2.4.1+dfsg.orig.tar.xz dpkg-source: info: unpacking prody_2.4.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-network-access.patch dpkg-source: info: applying add-missing-test-files.patch dpkg-source: info: applying numpy-1.24.patch dpkg-source: info: applying 1816.patch dpkg-source: info: applying skip-equals-on-vector.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27776639 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27776639 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27776639 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package prody dpkg-buildpackage: info: source version 2.4.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem pybuild --with numpy3,python3 Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. dh_auto_clean -O--buildsystem=pybuild I: pybuild base:305: python3.11 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.11_prody/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it I: pybuild base:305: python3.12 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.12_prody/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/<>' rm -rf ProDy.egg-info make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem pybuild --with numpy3,python3 Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:305: python3.11 setup.py config running config I: pybuild base:305: python3.12 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:305: /usr/bin/python3.11 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.11_prody/build/prody copying prody/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody creating /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/residue.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/angle.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/fields.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/segment.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/donor.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/hierview.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/acceptor.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/bond.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/atomgroup.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/crossterm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/atomic.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/atommap.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/pointer.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/nbexclusion.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/chain.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/subset.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/improper.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/atom.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/selection.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/dihedral.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/select.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic copying prody/atomic/flags.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic creating /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/goa.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/pfam.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/uniprot.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/quartataweb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/cath.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database copying prody/database/dali.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/database creating /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/vmdfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/bbenm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/analysis.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/bildfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/signature.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/imanm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/sampling.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/plotting.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/modeset.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/gnm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/anm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/mechstiff.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/gamma.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/essa.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/perturb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/adaptive.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/heatmapper.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/nmdfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/entropy.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/exanm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/pca.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/editing.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/compare.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/nma.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/exgnm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/rtb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/mode.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics copying prody/dynamics/clustenm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics creating /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble copying prody/ensemble/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble copying prody/ensemble/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble copying prody/ensemble/ensemble.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble copying prody/ensemble/conformation.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble copying prody/ensemble/pdbensemble.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble creating /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree copying prody/kdtree/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree copying prody/kdtree/kdtree.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree creating /<>/.pybuild/cpython3_3.11_prody/build/prody/measure copying prody/measure/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/measure copying prody/measure/contacts.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/measure copying prody/measure/transform.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/measure copying prody/measure/measure.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/measure creating /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/starfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/fixer.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/blastpdb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/pdbfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/stride.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/emdfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/compare.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/wwpdb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/waterbridges.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/pdbclusters.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/cifheader.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/header.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/localpdb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/dssp.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins copying prody/proteins/ciffile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins creating /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/analysis.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/plotting.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/sequence.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/msa.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence copying prody/sequence/msafile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence creating /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/trajbase.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/dcdfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/trajfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/frame.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/psffile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory copying prody/trajectory/trajectory.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory creating /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/straw.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/norm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/cluster.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin copying prody/chromatin/hic.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin creating /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds copying prody/compounds/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds copying prody/compounds/ccd.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds copying prody/compounds/bird.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds copying prody/compounds/functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds copying prody/compounds/pdbligands.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds creating /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition creating /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/doctools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/seqtools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/drawtools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/pathtools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/misctools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/TreeConstruction.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/laptools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/legacy.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/checkers.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/settings.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/eigtools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/catchall.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities copying prody/utilities/logger.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities creating /<>/.pybuild/cpython3_3.11_prody/build/prody/apps copying prody/apps/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps copying prody/apps/apptools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps creating /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps creating /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests copying prody/tests/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_select.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure copying prody/tests/measure/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure copying prody/tests/measure/test_transform.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure copying prody/tests/measure/test_contacts.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure copying prody/tests/measure/test_measure.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_header.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence copying prody/tests/sequence/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory creating /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities copying prody/tests/utilities/__init__.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities creating /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build creating build/temp.linux-armv7l-cpython-311 creating build/temp.linux-armv7l-cpython-311/prody creating build/temp.linux-armv7l-cpython-311/prody/dynamics arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/dynamics/rtbtools.c -o build/temp.linux-armv7l-cpython-311/prody/dynamics/rtbtools.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-311/prody/dynamics/rtbtools.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/rtbtools.cpython-311-arm-linux-gnueabihf.so building 'prody.dynamics.smtools' extension arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/dynamics/smtools.c -o build/temp.linux-armv7l-cpython-311/prody/dynamics/smtools.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-311/prody/dynamics/smtools.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/smtools.cpython-311-arm-linux-gnueabihf.so building 'prody.sequence.msatools' extension creating build/temp.linux-armv7l-cpython-311/prody/sequence arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/sequence/msatools.c -o build/temp.linux-armv7l-cpython-311/prody/sequence/msatools.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-311/prody/sequence/msatools.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msatools.cpython-311-arm-linux-gnueabihf.so building 'prody.sequence.msaio' extension arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/sequence/msaio.c -o build/temp.linux-armv7l-cpython-311/prody/sequence/msaio.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-311/prody/sequence/msaio.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msaio.cpython-311-arm-linux-gnueabihf.so building 'prody.sequence.seqtools' extension arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/sequence/seqtools.c -o build/temp.linux-armv7l-cpython-311/prody/sequence/seqtools.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-311/prody/sequence/seqtools.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/seqtools.cpython-311-arm-linux-gnueabihf.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-armv7l-cpython-311/prody/kdtree arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/kdtree/KDTree.c -o build/temp.linux-armv7l-cpython-311/prody/kdtree/KDTree.o arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-armv7l-cpython-311/prody/kdtree/KDTreemodule.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-311/prody/kdtree/KDTree.o build/temp.linux-armv7l-cpython-311/prody/kdtree/KDTreemodule.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree/_CKDTree.cpython-311-arm-linux-gnueabihf.so building 'prody.proteins.ccealign' extension creating build/temp.linux-armv7l-cpython-311/prody/proteins creating build/temp.linux-armv7l-cpython-311/prody/proteins/ccealign arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -Iprody/utilities/tnt -I/usr/include/python3.11 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-armv7l-cpython-311/prody/proteins/ccealign/ccealignmodule.o arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-311/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/ccealign.cpython-311-arm-linux-gnueabihf.so I: pybuild base:305: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.12_prody/build/prody copying prody/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody creating /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/residue.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/angle.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/fields.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/segment.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/donor.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/hierview.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/acceptor.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/bond.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atomgroup.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/crossterm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atomic.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atommap.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/pointer.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/nbexclusion.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/chain.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/subset.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/improper.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atom.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/selection.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/dihedral.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/select.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/flags.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic creating /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/goa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/pfam.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/uniprot.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/quartataweb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/cath.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/dali.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database creating /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/vmdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/bbenm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/analysis.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/bildfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/signature.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/imanm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/sampling.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/plotting.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/modeset.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/gnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/anm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/mechstiff.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/gamma.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/essa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/perturb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/adaptive.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/heatmapper.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/nmdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/entropy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/exanm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/editing.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/compare.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/nma.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/exgnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/rtb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/mode.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/clustenm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics creating /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/ensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/conformation.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/pdbensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble creating /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree copying prody/kdtree/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree copying prody/kdtree/kdtree.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree creating /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/contacts.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/transform.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/measure.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure creating /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/starfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/fixer.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/blastpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/pdbfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/stride.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/emdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/compare.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/wwpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/waterbridges.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/pdbclusters.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/cifheader.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/header.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/localpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/dssp.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/ciffile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins creating /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/analysis.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/plotting.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/sequence.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/msa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/msafile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence creating /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/trajbase.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/dcdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/trajfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/frame.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/psffile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/trajectory.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory creating /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/straw.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/norm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/cluster.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/hic.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin creating /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/ccd.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/bird.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/pdbligands.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds creating /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition creating /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/doctools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/seqtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/drawtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/pathtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/misctools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/TreeConstruction.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/laptools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/legacy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/checkers.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/settings.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/eigtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/catchall.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/logger.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities creating /<>/.pybuild/cpython3_3.12_prody/build/prody/apps copying prody/apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps copying prody/apps/apptools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests copying prody/tests/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_select.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/test_transform.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/test_contacts.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/test_measure.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_header.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities creating /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-armv7l-cpython-312 creating build/temp.linux-armv7l-cpython-312/prody creating build/temp.linux-armv7l-cpython-312/prody/dynamics arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/rtbtools.c -o build/temp.linux-armv7l-cpython-312/prody/dynamics/rtbtools.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-312/prody/dynamics/rtbtools.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/rtbtools.cpython-312-arm-linux-gnueabihf.so building 'prody.dynamics.smtools' extension arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/smtools.c -o build/temp.linux-armv7l-cpython-312/prody/dynamics/smtools.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-312/prody/dynamics/smtools.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/smtools.cpython-312-arm-linux-gnueabihf.so building 'prody.sequence.msatools' extension creating build/temp.linux-armv7l-cpython-312/prody/sequence arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msatools.c -o build/temp.linux-armv7l-cpython-312/prody/sequence/msatools.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-312/prody/sequence/msatools.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msatools.cpython-312-arm-linux-gnueabihf.so building 'prody.sequence.msaio' extension arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msaio.c -o build/temp.linux-armv7l-cpython-312/prody/sequence/msaio.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-312/prody/sequence/msaio.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msaio.cpython-312-arm-linux-gnueabihf.so building 'prody.sequence.seqtools' extension arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/seqtools.c -o build/temp.linux-armv7l-cpython-312/prody/sequence/seqtools.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-312/prody/sequence/seqtools.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/seqtools.cpython-312-arm-linux-gnueabihf.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-armv7l-cpython-312/prody/kdtree arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTree.c -o build/temp.linux-armv7l-cpython-312/prody/kdtree/KDTree.o arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-armv7l-cpython-312/prody/kdtree/KDTreemodule.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-312/prody/kdtree/KDTree.o build/temp.linux-armv7l-cpython-312/prody/kdtree/KDTreemodule.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/_CKDTree.cpython-312-arm-linux-gnueabihf.so building 'prody.proteins.ccealign' extension creating build/temp.linux-armv7l-cpython-312/prody/proteins creating build/temp.linux-armv7l-cpython-312/prody/proteins/ccealign arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -Iprody/utilities/tnt -I/usr/include/python3.12 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-armv7l-cpython-312/prody/proteins/ccealign/ccealignmodule.o arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fno-stack-clash-protection -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-armv7l-cpython-312/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib/arm-linux-gnueabihf -o /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/ccealign.cpython-312-arm-linux-gnueabihf.so dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:305: cd /<>/.pybuild/cpython3_3.11_prody/build; python3.11 -m unittest discover -v testANMCommand (prody.tests.apps.test_prody_anm.TestANMCommand.testANMCommand) ... skipped 'prody command not found' testAlignConcat (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testAlignConcat) ... skipped 'prody command not found' testAlignException (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testAlignException) ... skipped 'prody command is not found' testIOException (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testIOException) ... skipped 'prody command is not found' testSelectConcat (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testSelectConcat) ... skipped 'prody command not found' testSelectException (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testSelectException) ... skipped 'prody command is not found' testSelectException2 (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testSelectException2) ... skipped 'prody command is not found' testSimpleConcat (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testSimpleConcat) ... skipped 'prody command not found' testCommandExample1 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample1) Test example: $ prody anm 1p38 ... skipped 'prody command not found' testCommandExample10 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample10) Test example: $ prody align 2k39 --select "backbone and resnum < 71" ... skipped 'prody command not found' testCommandExample11 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample11) Test example: $ prody align --select "resnum < 300" 1p38 1r39 1zz2 ... skipped 'prody command not found' testCommandExample12 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample12) Test example: $ prody align --select "resnum 1 to 70" 1aar 2k39 ... skipped 'prody command not found' testCommandExample13 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample13) Test example: $ prody align --select "noh heme and chain A" 1hrc 1fi7 ... skipped 'prody command not found' testCommandExample14 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample14) Test example: $ prody biomol 2bfu ... skipped 'prody command not found' testCommandExample15 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample15) Test example: $ prody select -o B11 "resname B11" 1zz2 $ prody select -o BOG "resname BOG" 1zz2 $ prody contacts -r 4.0 -t residue -s protein 1zz2 B11.pdb BOG.pdb ... skipped 'prody command not found' testCommandExample16 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample16) Test example: $ prody fetch 1mkp 1p38 ... skipped 'prody command not found' testCommandExample17 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample17) Test example: $ prody select backbone 1p38 1r39 ... skipped 'prody command not found' testCommandExample18 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample18) Test example: $ prody energy 1p38 1r39 ... skipped 'prody command not found' testCommandExample19 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample19) Test example: $ prody clustenm 1p38 ... skipped 'prody command not found' testCommandExample2 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample2) Test example: $ prody anm 1aar -s "calpha and chain A and resnum < 70" -A ... skipped 'prody command not found' testCommandExample20 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample20) Test example: $ prody clustenm 1aar -s "calpha and chain A and resnum < 70" -A ... skipped 'prody command not found' testCommandExample3 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample3) Test example: $ prody gnm 1p38 ... skipped 'prody command not found' testCommandExample4 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample4) Test example: $ prody gnm 1aar -c 7 -s "calpha and chain A and resnum < 70" -A ... skipped 'prody command not found' testCommandExample5 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample5) Test example: $ prody pca 2k39 ... skipped 'prody command not found' testCommandExample6 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample6) Test example: $ prody pca 2k39 --select "backbone and resnum < 71" -a -A ... skipped 'prody command not found' testCommandExample7 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample7) Test example: $ prody pca 2k39 ... skipped 'prody command not found' testCommandExample8 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample8) Test example: $ prody pca 2k39 --select "backbone and resnum < 71" -a -A ... skipped 'prody command not found' testCommandExample9 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample9) Test example: $ prody align 2k39 ... skipped 'prody command not found' testGNMCommand (prody.tests.apps.test_prody_gnm.TestGNMCommand.testGNMCommand) ... skipped 'prody command not found' testPCACommandDCD (prody.tests.apps.test_prody_pca.TestPCACommand.testPCACommandDCD) ... skipped 'prody command not found' testPCACommandPDB (prody.tests.apps.test_prody_pca.TestPCACommand.testPCACommandPDB) ... skipped 'prody command not found' testAtomGroup (prody.tests.atomic.test_atomic.TestAtomIterations.testAtomGroup) ... ok testAtomMap (prody.tests.atomic.test_atomic.TestAtomIterations.testAtomMap) ... ok testChain (prody.tests.atomic.test_atomic.TestAtomIterations.testChain) ... ok testResidue (prody.tests.atomic.test_atomic.TestAtomIterations.testResidue) ... ok testSelection (prody.tests.atomic.test_atomic.TestAtomIterations.testSelection) ... ok testAtom (prody.tests.atomic.test_atomic.TestPickling.testAtom) ... ok testAtomGroup (prody.tests.atomic.test_atomic.TestPickling.testAtomGroup) ... ok testSelection (prody.tests.atomic.test_atomic.TestPickling.testSelection) ... ok testSaveLoad (prody.tests.atomic.test_atomic.TestSaveLoad.testSaveLoad) ... ok testInstantiation (prody.tests.atomic.test_atommap.TestInstantiation.testInstantiation) ... ok testAllSelection (prody.tests.atomic.test_atommap.TestSelection.testAllSelection) ... ok testChainSelection (prody.tests.atomic.test_atommap.TestSelection.testChainSelection) ... ok testGetBoolArray (prody.tests.atomic.test_atommap.TestSelection.testGetBoolArray) ... ok testNameSelection (prody.tests.atomic.test_atommap.TestSelection.testNameSelection) ... ok testSplit (prody.tests.atomic.test_fragment.TestFragment.testSplit) ... ok testSplitCopy (prody.tests.atomic.test_fragment.TestFragment.testSplitCopy) ... ok testSplitNoh (prody.tests.atomic.test_fragment.TestFragment.testSplitNoh) ... ok testSplitNohCopy (prody.tests.atomic.test_fragment.TestFragment.testSplitNohCopy) ... ok testWhole (prody.tests.atomic.test_fragment.TestFragment.testWhole) ... ok testWhole2 (prody.tests.atomic.test_fragment.TestFragment.testWhole2) ... ok testWholeAll (prody.tests.atomic.test_fragment.TestFragment.testWholeAll) ... ok testWholeCopy (prody.tests.atomic.test_fragment.TestFragment.testWholeCopy) ... ok testWholeNoh (prody.tests.atomic.test_fragment.TestFragment.testWholeNoh) ... ok testWholeNohCopy (prody.tests.atomic.test_fragment.TestFragment.testWholeNohCopy) ... ok testCA (prody.tests.atomic.test_hierview.TestShuffled.testCA) ... ok testProtein (prody.tests.atomic.test_hierview.TestShuffled.testProtein) ... ok testNumResidues (prody.tests.atomic.test_hierview.TestTerRecord.testNumResidues) ... ok testResidueIndexing (prody.tests.atomic.test_hierview.TestTerRecord.testResidueIndexing) ... ok testSelectionResidueIndexing (prody.tests.atomic.test_hierview.TestTerRecord.testSelectionResidueIndexing) ... ok testSelectionResidueIndexing2 (prody.tests.atomic.test_hierview.TestTerRecord.testSelectionResidueIndexing2) ... ok testMacro1 (prody.tests.atomic.test_select.TestMacros.testMacro1) Test macro *cacb*: 'name CA CB' ... ok testMacro2 (prody.tests.atomic.test_select.TestMacros.testMacro2) Test macro *donors*: '(protein) and (name N NE NH2 ND2 NE2 ND1 OG OH NH1 SG OG1 NE2 NZ NE1 ND1 NE2)' ... ok testMacroFunctions (prody.tests.atomic.test_select.TestMacros.testMacroFunctions) ... ok testBondedtoSelection1 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection1) Test bondedto selections 'bonded to index 0' for imatinib ... ok testBondedtoSelection10 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection10) Test bondedto selections "bonded 2 to index 0" ... ok testBondedtoSelection11 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection11) Test bondedto selections 'bonded 0 to index 0' for imatinib ... ok testBondedtoSelection12 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection12) Test bondedto selections "bonded 0 to index 0" ... ok testBondedtoSelection13 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection13) Test bondedto selections 'bonded 3 to index 0' for imatinib ... ok testBondedtoSelection14 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection14) Test bondedto selections "bonded 3 to index 0" ... ok testBondedtoSelection15 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection15) Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok testBondedtoSelection16 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection16) Test bondedto selections "bonded 4 to index 0" ... ok testBondedtoSelection17 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection17) Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok testBondedtoSelection18 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection18) Test bondedto selections "bonded 4 to index 0" ... ok testBondedtoSelection19 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection19) Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok testBondedtoSelection2 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection2) Test bondedto selections "bonded to index 0" ... ok testBondedtoSelection20 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection20) Test bondedto selections "bonded 4 to index 0" ... ok testBondedtoSelection21 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection21) Test bondedto selections 'exbonded 1 to index 0' for imatinib ... ok testBondedtoSelection22 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection22) Test bondedto selections "exbonded 1 to index 0" ... ok testBondedtoSelection23 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection23) Test bondedto selections 'exbonded 2 to index 0' for imatinib ... ok testBondedtoSelection24 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection24) Test bondedto selections "exbonded 2 to index 0" ... ok testBondedtoSelection25 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection25) Test bondedto selections 'exbonded 3 to index 0' for imatinib ... ok testBondedtoSelection26 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection26) Test bondedto selections "exbonded 3 to index 0" ... ok testBondedtoSelection27 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection27) Test bondedto selections 'bonded 20 to index 0' for imatinib ... ok testBondedtoSelection28 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection28) Test bondedto selections "bonded 20 to index 0" ... ok testBondedtoSelection29 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection29) Test bondedto selections 'bonded 20 to index 10' for imatinib ... ok testBondedtoSelection3 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection3) Test bondedto selections 'exbonded to index 0' for imatinib ... ok testBondedtoSelection30 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection30) Test bondedto selections "bonded 20 to index 10" ... ok testBondedtoSelection31 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection31) Test bondedto selections 'bonded to index 1000' for imatinib ... ok testBondedtoSelection32 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection32) Test bondedto selections "bonded to index 1000" ... ok testBondedtoSelection33 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection33) Test bondedto selections 'fragment 0' for imatinib ... ok testBondedtoSelection34 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection34) Test bondedto selections "fragment 0" ... ok testBondedtoSelection35 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection35) Test bondedto selections 'fragment 1' for imatinib ... ok testBondedtoSelection36 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection36) Test bondedto selections "fragment 1" ... ok testBondedtoSelection37 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection37) Test bondedto selections 'fragment 0 1 2' for imatinib ... ok testBondedtoSelection38 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection38) Test bondedto selections "fragment 0 1 2" ... ok testBondedtoSelection39 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection39) Test bondedto selections 'fragindex 0 1 2' for imatinib ... ok testBondedtoSelection4 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection4) Test bondedto selections "exbonded to index 0" ... ok testBondedtoSelection40 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection40) Test bondedto selections "fragindex 0 1 2" ... ok testBondedtoSelection41 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection41) Test bondedto selections 'fragindex 0:2' for imatinib ... ok testBondedtoSelection42 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection42) Test bondedto selections "fragindex 0:2" ... ok testBondedtoSelection5 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection5) Test bondedto selections 'bonded to index 67' for imatinib ... ok testBondedtoSelection6 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection6) Test bondedto selections "bonded to index 67" ... ok testBondedtoSelection7 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection7) Test bondedto selections 'exbonded to index 67' for imatinib ... ok testBondedtoSelection8 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection8) Test bondedto selections "exbonded to index 67" ... ok testBondedtoSelection9 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection9) Test bondedto selections 'bonded 2 to index 0' for imatinib ... ok testComparisonsSelection1 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection1) Test comparisons selections 'x = -51.659' for pdb3mht ... ok testComparisonsSelection10 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection10) Test comparisons selections "beta > 10" ... ok testComparisonsSelection11 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection11) Test comparisons selections 'beta < 10' for pdb3mht ... ok testComparisonsSelection12 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection12) Test comparisons selections "beta < 10" ... ok testComparisonsSelection13 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection13) Test comparisons selections 'occupancy > 0.999999' for pdb3mht ... ok testComparisonsSelection14 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection14) Test comparisons selections "occupancy > 0.999999" ... ok testComparisonsSelection15 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection15) Test comparisons selections '-10 <= x < 0' for pdb3mht ... ok testComparisonsSelection16 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection16) Test comparisons selections "-10 <= x < 0" ... ok testComparisonsSelection17 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection17) Test comparisons selections '11 > 10' for pdb3mht ... ok testComparisonsSelection18 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection18) Test comparisons selections "11 > 10" ... ok testComparisonsSelection19 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection19) Test comparisons selections 'radius > 10' for pdb3mht ... ok testComparisonsSelection2 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection2) Test comparisons selections "x = -51.659" ... ok testComparisonsSelection20 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection20) Test comparisons selections "radius > 10" ... ok testComparisonsSelection21 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection21) Test comparisons selections 'chain = A' for pdb3mht ... ok testComparisonsSelection22 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection22) Test comparisons selections "chain = A" ... ok testComparisonsSelection23 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection23) Test comparisons selections 'x x < 1' for pdb3mht ... ok testComparisonsSelection24 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection24) Test comparisons selections "x x < 1" ... ok testComparisonsSelection25 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection25) Test comparisons selections 'name < 1' for pdb3mht ... ok testComparisonsSelection26 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection26) Test comparisons selections "name < 1" ... ok testComparisonsSelection3 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection3) Test comparisons selections 'x != -51.659' for pdb3mht ... ok testComparisonsSelection4 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection4) Test comparisons selections "x != -51.659" ... ok testComparisonsSelection5 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection5) Test comparisons selections 'z >= 82.813' for pdb3mht ... ok testComparisonsSelection6 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection6) Test comparisons selections "z >= 82.813" ... ok testComparisonsSelection7 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection7) Test comparisons selections 'z < 82.813' for pdb3mht ... ok testComparisonsSelection8 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection8) Test comparisons selections "z < 82.813" ... ok testComparisonsSelection9 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection9) Test comparisons selections 'beta > 10' for pdb3mht ... ok testCompositeSelection1 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection1) Test composite selections 'chain x y z C and x 10' for pdb3mht ... ok testCompositeSelection10 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection10) Test composite selections "water and within 5 of not protein" ... ok testCompositeSelection11 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection11) Test composite selections 'backbone and sqrt((x - 25)**2 + (y - 74)**2 + (z - 13)**2) <= 500' for pdb3mht ... ok testCompositeSelection12 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection12) Test composite selections "backbone and sqrt((x - 25)**2 + (y - 74)**2 + (z - 13)**2) <= 500" ... ok testCompositeSelection13 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection13) Test composite selections '(not resname SAH) and (protein and name CA) or (nucleic and name P)' for pdb3mht ... ok testCompositeSelection14 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection14) Test composite selections "(not resname SAH) and (protein and name CA) or (nucleic and name P)" ... ok testCompositeSelection15 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection15) Test composite selections 'protein and (backbone or name H)' for pdb3mht ... ok testCompositeSelection16 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection16) Test composite selections "protein and (backbone or name H)" ... ok testCompositeSelection17 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection17) Test composite selections 'same residue as within 4 of and resname SAH' for pdb3mht ... ok testCompositeSelection18 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection18) Test composite selections "same residue as within 4 of and resname SAH" ... ok testCompositeSelection19 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection19) Test composite selections 'protein and name CA CB and same residue as ((x+21.2)**2 + (y-35.9)**2 + (z-80.0)**2)**0.5 < 10' for pdb3mht ... ok testCompositeSelection2 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection2) Test composite selections "chain x y z C and x 10" ... ok testCompositeSelection20 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection20) Test composite selections "protein and name CA CB and same residue as ((x+21.2)**2 + (y-35.9)**2 + (z-80.0)**2)**0.5 < 10" ... ok testCompositeSelection3 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection3) Test composite selections 'resnum `1` `2`' for pdb3mht ... ok testCompositeSelection4 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection4) Test composite selections "resnum `1` `2`" ... ok testCompositeSelection5 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection5) Test composite selections 'same residue as within 4 of resname SAH' for pdb3mht ... ok testCompositeSelection6 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection6) Test composite selections "same residue as within 4 of resname SAH" ... ok testCompositeSelection7 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection7) Test composite selections 'name CA and same residue as within 4 of resname SAH' for pdb3mht ... ok testCompositeSelection8 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection8) Test composite selections "name CA and same residue as within 4 of resname SAH" ... ok testCompositeSelection9 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection9) Test composite selections 'water and within 5 of not protein' for pdb3mht ... ok testDocexamplesSelection1 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection1) Test docexamples selections 'serial 1 2 3' for pdb3mht ... ok testDocexamplesSelection10 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection10) Test docexamples selections "beta 555.55" ... ok testDocexamplesSelection11 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection11) Test docexamples selections 'beta 1 to 500' for pdb3mht ... ok testDocexamplesSelection12 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection12) Test docexamples selections "beta 1 to 500" ... ok testDocexamplesSelection13 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection13) Test docexamples selections 'beta 1:500' for pdb3mht ... ok testDocexamplesSelection14 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection14) Test docexamples selections "beta 1:500" ... ok testDocexamplesSelection15 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection15) Test docexamples selections 'beta < 500' for pdb3mht ... ok testDocexamplesSelection16 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection16) Test docexamples selections "beta < 500" ... ok testDocexamplesSelection17 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection17) Test docexamples selections 'resnum 120A 120B' for pdb3mht ... ok testDocexamplesSelection18 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection18) Test docexamples selections "resnum 120A 120B" ... ok testDocexamplesSelection19 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection19) Test docexamples selections 'icode A' for pdb3mht ... ok testDocexamplesSelection2 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection2) Test docexamples selections "serial 1 2 3" ... ok testDocexamplesSelection20 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection20) Test docexamples selections "icode A" ... ok testDocexamplesSelection21 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection21) Test docexamples selections 'icode _' for pdb3mht ... ok testDocexamplesSelection22 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection22) Test docexamples selections "icode _" ... ok testDocexamplesSelection23 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection23) Test docexamples selections 'charge 1' for pdb3mht ... ok testDocexamplesSelection24 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection24) Test docexamples selections "charge 1" ... ok testDocexamplesSelection25 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection25) Test docexamples selections 'abs(charge) == 1' for pdb3mht ... ok testDocexamplesSelection26 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection26) Test docexamples selections "abs(charge) == 1" ... ok testDocexamplesSelection27 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection27) Test docexamples selections 'charge < 0' for pdb3mht ... ok testDocexamplesSelection28 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection28) Test docexamples selections "charge < 0" ... ok testDocexamplesSelection29 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection29) Test docexamples selections '0 < mass < 500' for pdb3mht ... ok testDocexamplesSelection3 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection3) Test docexamples selections 'serial 1 to 10' for pdb3mht ... ok testDocexamplesSelection30 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection30) Test docexamples selections "0 < mass < 500" ... ok testDocexamplesSelection31 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection31) Test docexamples selections 'abs(mass) <= mass <= 10' for pdb3mht ... ok testDocexamplesSelection32 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection32) Test docexamples selections "abs(mass) <= mass <= 10" ... ok testDocexamplesSelection4 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection4) Test docexamples selections "serial 1 to 10" ... ok testDocexamplesSelection5 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection5) Test docexamples selections 'serial 1:10:2' for pdb3mht ... ok testDocexamplesSelection6 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection6) Test docexamples selections "serial 1:10:2" ... ok testDocexamplesSelection7 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection7) Test docexamples selections 'serial < 10' for pdb3mht ... ok testDocexamplesSelection8 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection8) Test docexamples selections "serial < 10" ... ok testDocexamplesSelection9 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection9) Test docexamples selections 'beta 555.55' for pdb3mht ... ok testEquivalentSelection1 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection1) Test equivalent selections 'chain C' for pdb3mht ... ok testEquivalentSelection2 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection2) Test equivalent selections "chain C" ... ok testEquivalentSelection3 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection3) Test equivalent selections 'chain C' for pdb3mht ... ok testEquivalentSelection4 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection4) Test equivalent selections "chain C" ... ok testEquivalentSelection5 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection5) Test equivalent selections 'nucleic' for pdb3mht ... ok testEquivalentSelection6 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection6) Test equivalent selections "nucleic" ... ok testFlagsSelection1 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection1) Test flags selections 'protein' for gromacs ... ok testFlagsSelection10 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection10) Test flags selections "aliphatic" ... ok testFlagsSelection100 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection100) Test flags selections "bridge" ... ok testFlagsSelection101 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection101) Test flags selections 'bend' for pdb3mht ... ok testFlagsSelection102 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection102) Test flags selections "bend" ... ok testFlagsSelection103 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection103) Test flags selections 'coil' for pdb3mht ... ok testFlagsSelection104 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection104) Test flags selections "coil" ... ok testFlagsSelection11 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection11) Test flags selections 'aromatic' for pdb3mht ... ok testFlagsSelection12 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection12) Test flags selections "aromatic" ... ok testFlagsSelection13 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection13) Test flags selections 'at' for pdb3mht ... ok testFlagsSelection14 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection14) Test flags selections "at" ... ok testFlagsSelection15 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection15) Test flags selections 'basic' for pdb3mht ... ok testFlagsSelection16 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection16) Test flags selections "basic" ... ok testFlagsSelection17 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection17) Test flags selections 'buried' for pdb3mht ... ok testFlagsSelection18 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection18) Test flags selections "buried" ... ok testFlagsSelection19 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection19) Test flags selections 'cg' for pdb3mht ... ok testFlagsSelection2 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection2) Test flags selections "protein" ... ok testFlagsSelection20 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection20) Test flags selections "cg" ... ok testFlagsSelection21 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection21) Test flags selections 'charged' for pdb3mht ... ok testFlagsSelection22 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection22) Test flags selections "charged" ... ok testFlagsSelection23 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection23) Test flags selections 'cyclic' for pdb3mht ... ok testFlagsSelection24 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection24) Test flags selections "cyclic" ... ok testFlagsSelection25 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection25) Test flags selections 'heme' for pdb3mht ... ok testFlagsSelection26 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection26) Test flags selections "heme" ... ok testFlagsSelection27 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection27) Test flags selections 'hydrophobic' for pdb3mht ... ok testFlagsSelection28 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection28) Test flags selections "hydrophobic" ... ok testFlagsSelection29 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection29) Test flags selections 'ion' for pdb3mht ... ok testFlagsSelection3 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection3) Test flags selections 'all' for pdb3mht ... ok testFlagsSelection30 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection30) Test flags selections "ion" ... ok testFlagsSelection31 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection31) Test flags selections 'large' for pdb3mht ... ok testFlagsSelection32 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection32) Test flags selections "large" ... ok testFlagsSelection33 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection33) Test flags selections 'lipid' for pdb3mht ... ok testFlagsSelection34 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection34) Test flags selections "lipid" ... ok testFlagsSelection35 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection35) Test flags selections 'medium' for pdb3mht ... ok testFlagsSelection36 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection36) Test flags selections "medium" ... ok testFlagsSelection37 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection37) Test flags selections 'neutral' for pdb3mht ... ok testFlagsSelection38 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection38) Test flags selections "neutral" ... ok testFlagsSelection39 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection39) Test flags selections 'nucleic' for pdb3mht ... ok testFlagsSelection4 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection4) Test flags selections "all" ... ok testFlagsSelection40 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection40) Test flags selections "nucleic" ... ok testFlagsSelection41 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection41) Test flags selections 'nucleotide' for pdb3mht ... ok testFlagsSelection42 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection42) Test flags selections "nucleotide" ... ok testFlagsSelection43 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection43) Test flags selections 'nucleobase' for pdb3mht ... ok testFlagsSelection44 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection44) Test flags selections "nucleobase" ... ok testFlagsSelection45 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection45) Test flags selections 'nucleoside' for pdb3mht ... ok testFlagsSelection46 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection46) Test flags selections "nucleoside" ... ok testFlagsSelection47 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection47) Test flags selections 'polar' for pdb3mht ... ok testFlagsSelection48 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection48) Test flags selections "polar" ... ok testFlagsSelection49 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection49) Test flags selections 'protein' for pdb3mht ... ok testFlagsSelection5 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection5) Test flags selections 'acidic' for pdb3mht ... ok testFlagsSelection50 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection50) Test flags selections "protein" ... ok testFlagsSelection51 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection51) Test flags selections 'stdaa' for pdb3mht ... ok testFlagsSelection52 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection52) Test flags selections "stdaa" ... ok testFlagsSelection53 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection53) Test flags selections 'nonstdaa' for pdb3mht ... ok testFlagsSelection54 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection54) Test flags selections "nonstdaa" ... ok testFlagsSelection55 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection55) Test flags selections 'purine' for pdb3mht ... ok testFlagsSelection56 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection56) Test flags selections "purine" ... ok testFlagsSelection57 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection57) Test flags selections 'pyrimidine' for pdb3mht ... ok testFlagsSelection58 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection58) Test flags selections "pyrimidine" ... ok testFlagsSelection59 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection59) Test flags selections 'small' for pdb3mht ... ok testFlagsSelection6 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection6) Test flags selections "acidic" ... ok testFlagsSelection60 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection60) Test flags selections "small" ... ok testFlagsSelection61 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection61) Test flags selections 'sugar' for pdb3mht ... ok testFlagsSelection62 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection62) Test flags selections "sugar" ... ok testFlagsSelection63 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection63) Test flags selections 'surface' for pdb3mht ... ok testFlagsSelection64 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection64) Test flags selections "surface" ... ok testFlagsSelection65 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection65) Test flags selections 'water' for pdb3mht ... ok testFlagsSelection66 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection66) Test flags selections "water" ... ok testFlagsSelection67 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection67) Test flags selections 'hetero' for pdb3mht ... ok testFlagsSelection68 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection68) Test flags selections "hetero" ... ok testFlagsSelection69 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection69) Test flags selections 'hetatm' for pdb3mht ... ok testFlagsSelection7 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection7) Test flags selections 'acyclic' for pdb3mht ... ok testFlagsSelection70 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection70) Test flags selections "hetatm" ... ok testFlagsSelection71 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection71) Test flags selections 'calpha' for pdb3mht ... ok testFlagsSelection72 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection72) Test flags selections "calpha" ... ok testFlagsSelection73 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection73) Test flags selections 'backbone' for pdb3mht ... ok testFlagsSelection74 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection74) Test flags selections "backbone" ... ok testFlagsSelection75 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection75) Test flags selections 'backbonefull' for pdb3mht ... ok testFlagsSelection76 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection76) Test flags selections "backbonefull" ... ok testFlagsSelection77 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection77) Test flags selections 'sidechain' for pdb3mht ... ok testFlagsSelection78 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection78) Test flags selections "sidechain" ... ok testFlagsSelection79 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection79) Test flags selections 'carbon' for pdb3mht ... ok testFlagsSelection8 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection8) Test flags selections "acyclic" ... ok testFlagsSelection80 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection80) Test flags selections "carbon" ... ok testFlagsSelection81 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection81) Test flags selections 'hydrogen' for pdb3mht ... ok testFlagsSelection82 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection82) Test flags selections "hydrogen" ... ok testFlagsSelection83 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection83) Test flags selections 'noh' for pdb3mht ... ok testFlagsSelection84 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection84) Test flags selections "noh" ... ok testFlagsSelection85 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection85) Test flags selections 'nitrogen' for pdb3mht ... ok testFlagsSelection86 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection86) Test flags selections "nitrogen" ... ok testFlagsSelection87 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection87) Test flags selections 'oxygen' for pdb3mht ... ok testFlagsSelection88 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection88) Test flags selections "oxygen" ... ok testFlagsSelection89 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection89) Test flags selections 'sulfur' for pdb3mht ... ok testFlagsSelection9 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection9) Test flags selections 'aliphatic' for pdb3mht ... ok testFlagsSelection90 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection90) Test flags selections "sulfur" ... ok testFlagsSelection91 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection91) Test flags selections 'extended' for pdb3mht ... ok testFlagsSelection92 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection92) Test flags selections "extended" ... ok testFlagsSelection93 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection93) Test flags selections 'helix' for pdb3mht ... ok testFlagsSelection94 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection94) Test flags selections "helix" ... ok testFlagsSelection95 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection95) Test flags selections 'helix310' for pdb3mht ... ok testFlagsSelection96 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection96) Test flags selections "helix310" ... ok testFlagsSelection97 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection97) Test flags selections 'turn' for pdb3mht ... ok testFlagsSelection98 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection98) Test flags selections "turn" ... ok testFlagsSelection99 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection99) Test flags selections 'bridge' for pdb3mht ... ok testFloatSelection1 (prody.tests.atomic.test_select.TestSelect.testFloatSelection1) Test float selections 'beta 5.0 41.15 11.85' for pdb3mht ... ok testFloatSelection10 (prody.tests.atomic.test_select.TestSelect.testFloatSelection10) Test float selections "z 115.246 45.784" ... ok testFloatSelection11 (prody.tests.atomic.test_select.TestSelect.testFloatSelection11) Test float selections 'charge 0' for pdb3mht ... ok testFloatSelection12 (prody.tests.atomic.test_select.TestSelect.testFloatSelection12) Test float selections "charge 0" ... ok testFloatSelection13 (prody.tests.atomic.test_select.TestSelect.testFloatSelection13) Test float selections 'mass 1' for pdb3mht ... ok testFloatSelection14 (prody.tests.atomic.test_select.TestSelect.testFloatSelection14) Test float selections "mass 1" ... ok testFloatSelection15 (prody.tests.atomic.test_select.TestSelect.testFloatSelection15) Test float selections 'radius 0' for pdb3mht ... ok testFloatSelection16 (prody.tests.atomic.test_select.TestSelect.testFloatSelection16) Test float selections "radius 0" ... ok testFloatSelection17 (prody.tests.atomic.test_select.TestSelect.testFloatSelection17) Test float selections 'beta "1."' for pdb3mht ... ok testFloatSelection18 (prody.tests.atomic.test_select.TestSelect.testFloatSelection18) Test float selections "beta "1."" ... ok testFloatSelection19 (prody.tests.atomic.test_select.TestSelect.testFloatSelection19) Test float selections 'beta = "1."' for pdb3mht ... ok testFloatSelection2 (prody.tests.atomic.test_select.TestSelect.testFloatSelection2) Test float selections "beta 5.0 41.15 11.85" ... ok testFloatSelection20 (prody.tests.atomic.test_select.TestSelect.testFloatSelection20) Test float selections "beta = "1."" ... ok testFloatSelection3 (prody.tests.atomic.test_select.TestSelect.testFloatSelection3) Test float selections 'occupancy 1.0' for pdb3mht ... ok testFloatSelection4 (prody.tests.atomic.test_select.TestSelect.testFloatSelection4) Test float selections "occupancy 1.0" ... ok testFloatSelection5 (prody.tests.atomic.test_select.TestSelect.testFloatSelection5) Test float selections 'x 6.665' for pdb3mht ... ok testFloatSelection6 (prody.tests.atomic.test_select.TestSelect.testFloatSelection6) Test float selections "x 6.665" ... ok testFloatSelection7 (prody.tests.atomic.test_select.TestSelect.testFloatSelection7) Test float selections 'y 69.99 13.314' for pdb3mht ... ok testFloatSelection8 (prody.tests.atomic.test_select.TestSelect.testFloatSelection8) Test float selections "y 69.99 13.314" ... ok testFloatSelection9 (prody.tests.atomic.test_select.TestSelect.testFloatSelection9) Test float selections 'z 115.246 45.784' for pdb3mht ... ok testFunctionSelection1 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection1) Test function selections 'sqrt(x**2 + y**2 + z**2) < 100' for pdb3mht ... ok testFunctionSelection10 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection10) Test function selections "ceil(beta) == 10" ... ok testFunctionSelection11 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection11) Test function selections 'floor(beta) == 10' for pdb3mht ... ok testFunctionSelection12 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection12) Test function selections "floor(beta) == 10" ... ok testFunctionSelection13 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection13) Test function selections 'sq(x-5)+sq(y+4)+sq(z) > sq(100)' for pdb3mht ... ok testFunctionSelection14 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection14) Test function selections "sq(x-5)+sq(y+4)+sq(z) > sq(100)" ... ok testFunctionSelection15 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection15) Test function selections '1 > sq(occ)' for pdb3mht ... ok testFunctionSelection16 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection16) Test function selections "1 > sq(occ)" ... ok testFunctionSelection17 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection17) Test function selections 'sq(x x) > 1' for pdb3mht ... ok testFunctionSelection18 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection18) Test function selections "sq(x x) > 1" ... ok testFunctionSelection2 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection2) Test function selections "sqrt(x**2 + y**2 + z**2) < 100" ... ok testFunctionSelection3 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection3) Test function selections 'sqrt(x**2 + y**2 + z**2) == (x**2 + y**2 + z**2) ** 0.5' for pdb3mht ... ok testFunctionSelection4 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection4) Test function selections "sqrt(x**2 + y**2 + z**2) == (x**2 + y**2 + z**2) ** 0.5" ... ok testFunctionSelection5 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection5) Test function selections 'beta % 3 < 1' for pdb3mht ... ok testFunctionSelection6 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection6) Test function selections "beta % 3 < 1" ... ok testFunctionSelection7 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection7) Test function selections 'beta % 4 % 3 < 1' for pdb3mht ... ok testFunctionSelection8 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection8) Test function selections "beta % 4 % 3 < 1" ... ok testFunctionSelection9 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection9) Test function selections 'ceil(beta) == 10' for pdb3mht ... ok testIntegerSelection1 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection1) Test integer selections 'index 10 20 10000' for pdb3mht ... ok testIntegerSelection10 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection10) Test integer selections "resnum 100 105" ... ok testIntegerSelection11 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection11) Test integer selections 'resid 0' for pdb3mht ... ok testIntegerSelection12 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection12) Test integer selections "resid 0" ... ok testIntegerSelection13 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection13) Test integer selections 'resid 100 105' for pdb3mht ... ok testIntegerSelection14 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection14) Test integer selections "resid 100 105" ... ok testIntegerSelection15 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection15) Test integer selections 'resid 100 A 105' for pdb3mht ... ok testIntegerSelection16 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection16) Test integer selections "resid 100 A 105" ... ok testIntegerSelection17 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection17) Test integer selections 'fragindex 0' for pdb3mht ... ok testIntegerSelection18 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection18) Test integer selections "fragindex 0" ... ok testIntegerSelection19 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection19) Test integer selections 'fragment 0' for pdb3mht ... ok testIntegerSelection2 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection2) Test integer selections "index 10 20 10000" ... ok testIntegerSelection20 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection20) Test integer selections "fragment 0" ... ok testIntegerSelection3 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection3) Test integer selections 'serial 0' for pdb3mht ... ok testIntegerSelection4 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection4) Test integer selections "serial 0" ... ok testIntegerSelection5 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection5) Test integer selections 'serial 1 2' for pdb3mht ... ok testIntegerSelection6 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection6) Test integer selections "serial 1 2" ... ok testIntegerSelection7 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection7) Test integer selections 'resnum 0' for pdb3mht ... ok testIntegerSelection8 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection8) Test integer selections "resnum 0" ... ok testIntegerSelection9 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection9) Test integer selections 'resnum 100 105' for pdb3mht ... ok testInvalidSelection1 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection1) Test invalid selections 'chain C and and chain C' for pdb3mht ... ok testInvalidSelection10 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection10) Test invalid selections "sqr(x-5)+sqr(y+4)+sqr(z) > sqr(100)" ... ok testInvalidSelection11 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection11) Test invalid selections 'x > sq(calpha)' for pdb3mht ... ok testInvalidSelection12 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection12) Test invalid selections "x > sq(calpha)" ... ok testInvalidSelection13 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection13) Test invalid selections 'x > sq(name CA and resname ALA)' for pdb3mht ... ok testInvalidSelection14 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection14) Test invalid selections "x > sq(name CA and resname ALA)" ... ok testInvalidSelection15 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection15) Test invalid selections 'resname ALA and +1' for pdb3mht ... ok testInvalidSelection16 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection16) Test invalid selections "resname ALA and +1" ... ok testInvalidSelection2 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection2) Test invalid selections "chain C and and chain C" ... ok testInvalidSelection3 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection3) Test invalid selections 'chain C or or chain D' for pdb3mht ... ok testInvalidSelection4 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection4) Test invalid selections "chain C or or chain D" ... ok testInvalidSelection5 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection5) Test invalid selections 'chain C or not or chain D' for pdb3mht ... ok testInvalidSelection6 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection6) Test invalid selections "chain C or not or chain D" ... ok testInvalidSelection7 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection7) Test invalid selections 'chain C + 3' for pdb3mht ... ok testInvalidSelection8 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection8) Test invalid selections "chain C + 3" ... ok testInvalidSelection9 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection9) Test invalid selections 'sqr(x-5)+sqr(y+4)+sqr(z) > sqr(100)' for pdb3mht ... ok testKwargsSelection1 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection1) Test kwargs selections 'within 100 of origin' for pdb3mht ... ok testKwargsSelection10 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection10) Test kwargs selections "within 100 of none" ... ok testKwargsSelection2 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection2) Test kwargs selections "within 100 of origin" ... ok testKwargsSelection3 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection3) Test kwargs selections 'within 100 of origin' for pdb3mht ... ok testKwargsSelection4 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection4) Test kwargs selections "within 100 of origin" ... ok testKwargsSelection5 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection5) Test kwargs selections 'within 100 of origin' for pdb3mht ... ok testKwargsSelection6 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection6) Test kwargs selections "within 100 of origin" ... ok testKwargsSelection7 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection7) Test kwargs selections 'within 100 of origin' for pdb3mht ... ok testKwargsSelection8 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection8) Test kwargs selections "within 100 of origin" ... ok testKwargsSelection9 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection9) Test kwargs selections 'within 100 of none' for pdb3mht ... ok testLogicalSelection1 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection1) Test logical selections 'name or name' for pdb3mht ... ok testLogicalSelection10 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection10) Test logical selections "index 0 or index 1 " ... ok testLogicalSelection11 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection11) Test logical selections 'not not not not index 1' for pdb3mht ... ok testLogicalSelection12 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection12) Test logical selections "not not not not index 1" ... ok testLogicalSelection13 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection13) Test logical selections 'index 0 or index 1 or index 2' for pdb3mht ... ok testLogicalSelection14 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection14) Test logical selections "index 0 or index 1 or index 2" ... ok testLogicalSelection15 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection15) Test logical selections 'index 0 or index 1 or index 2 or index 4' for pdb3mht ... ok testLogicalSelection16 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection16) Test logical selections "index 0 or index 1 or index 2 or index 4" ... ok testLogicalSelection17 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection17) Test logical selections 'index 0 and index 1 ' for pdb3mht ... ok testLogicalSelection18 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection18) Test logical selections "index 0 and index 1 " ... ok testLogicalSelection19 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection19) Test logical selections 'index < 50 and index < 5' for pdb3mht ... ok testLogicalSelection2 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection2) Test logical selections "name or name" ... ok testLogicalSelection20 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection20) Test logical selections "index < 50 and index < 5" ... ok testLogicalSelection21 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection21) Test logical selections 'index < 50 and index < 25 and index < 5' for pdb3mht ... ok testLogicalSelection22 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection22) Test logical selections "index < 50 and index < 25 and index < 5" ... ok testLogicalSelection23 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection23) Test logical selections 'index < 5 and index < 25 and index < 50' for pdb3mht ... ok testLogicalSelection24 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection24) Test logical selections "index < 5 and index < 25 and index < 50" ... ok testLogicalSelection25 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection25) Test logical selections 'index 0 to 5 and index 0 to 25 and index 0 to 50' for pdb3mht ... ok testLogicalSelection26 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection26) Test logical selections "index 0 to 5 and index 0 to 25 and index 0 to 50" ... ok testLogicalSelection27 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection27) Test logical selections 'index < 5 and index < 25 and index < 50 or index < 50 or index < 5' for pdb3mht ... ok testLogicalSelection28 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection28) Test logical selections "index < 5 and index < 25 and index < 50 or index < 50 or index < 5" ... ok testLogicalSelection3 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection3) Test logical selections 'name and name' for pdb3mht ... ok testLogicalSelection4 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection4) Test logical selections "name and name" ... ok testLogicalSelection5 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection5) Test logical selections 'name CA and name CA' for pdb3mht ... ok testLogicalSelection6 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection6) Test logical selections "name CA and name CA" ... ok testLogicalSelection7 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection7) Test logical selections 'name CA or name CA' for pdb3mht ... ok testLogicalSelection8 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection8) Test logical selections "name CA or name CA" ... ok testLogicalSelection9 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection9) Test logical selections 'index 0 or index 1 ' for pdb3mht ... ok testOperationSelection1 (prody.tests.atomic.test_select.TestSelect.testOperationSelection1) Test operation selections 'x ** 2 < 10' for pdb3mht ... ok testOperationSelection10 (prody.tests.atomic.test_select.TestSelect.testOperationSelection10) Test operation selections "x**2 + y**2 + z**2 < 10000" ... ok testOperationSelection2 (prody.tests.atomic.test_select.TestSelect.testOperationSelection2) Test operation selections "x ** 2 < 10" ... ok testOperationSelection3 (prody.tests.atomic.test_select.TestSelect.testOperationSelection3) Test operation selections 'x ** 2 ** 2 ** 2 < 10' for pdb3mht ... ok testOperationSelection4 (prody.tests.atomic.test_select.TestSelect.testOperationSelection4) Test operation selections "x ** 2 ** 2 ** 2 < 10" ... ok testOperationSelection5 (prody.tests.atomic.test_select.TestSelect.testOperationSelection5) Test operation selections 'x ** (+2 ** (+2 ** +2)) < 10' for pdb3mht ... ok testOperationSelection6 (prody.tests.atomic.test_select.TestSelect.testOperationSelection6) Test operation selections "x ** (+2 ** (+2 ** +2)) < 10" ... ok testOperationSelection7 (prody.tests.atomic.test_select.TestSelect.testOperationSelection7) Test operation selections 'occupancy % 2 == 1' for pdb3mht ... ok testOperationSelection8 (prody.tests.atomic.test_select.TestSelect.testOperationSelection8) Test operation selections "occupancy % 2 == 1" ... ok testOperationSelection9 (prody.tests.atomic.test_select.TestSelect.testOperationSelection9) Test operation selections 'x**2 + y**2 + z**2 < 10000' for pdb3mht ... ok testRangeSelection1 (prody.tests.atomic.test_select.TestSelect.testRangeSelection1) Test range selections 'index 0:10' for pdb3mht ... ok testRangeSelection10 (prody.tests.atomic.test_select.TestSelect.testRangeSelection10) Test range selections "resnum 10to15" ... ok testRangeSelection11 (prody.tests.atomic.test_select.TestSelect.testRangeSelection11) Test range selections 'resnum 10:16:1' for pdb3mht ... ok testRangeSelection12 (prody.tests.atomic.test_select.TestSelect.testRangeSelection12) Test range selections "resnum 10:16:1" ... ok testRangeSelection13 (prody.tests.atomic.test_select.TestSelect.testRangeSelection13) Test range selections 'resnum `-3:16:1`' for pdb3mht ... ok testRangeSelection14 (prody.tests.atomic.test_select.TestSelect.testRangeSelection14) Test range selections "resnum `-3:16:1`" ... ok testRangeSelection15 (prody.tests.atomic.test_select.TestSelect.testRangeSelection15) Test range selections 'resid 10to15' for pdb3mht ... ok testRangeSelection16 (prody.tests.atomic.test_select.TestSelect.testRangeSelection16) Test range selections "resid 10to15" ... ok testRangeSelection17 (prody.tests.atomic.test_select.TestSelect.testRangeSelection17) Test range selections 'resid 10:16:1' for pdb3mht ... ok testRangeSelection18 (prody.tests.atomic.test_select.TestSelect.testRangeSelection18) Test range selections "resid 10:16:1" ... ok testRangeSelection19 (prody.tests.atomic.test_select.TestSelect.testRangeSelection19) Test range selections 'x `-10:20`' for pdb3mht ... ok testRangeSelection2 (prody.tests.atomic.test_select.TestSelect.testRangeSelection2) Test range selections "index 0:10" ... ok testRangeSelection20 (prody.tests.atomic.test_select.TestSelect.testRangeSelection20) Test range selections "x `-10:20`" ... ok testRangeSelection21 (prody.tests.atomic.test_select.TestSelect.testRangeSelection21) Test range selections 'x 0:20:1' for pdb3mht ... ok testRangeSelection22 (prody.tests.atomic.test_select.TestSelect.testRangeSelection22) Test range selections "x 0:20:1" ... ok testRangeSelection23 (prody.tests.atomic.test_select.TestSelect.testRangeSelection23) Test range selections 'beta 13.02:13.01' for pdb3mht ... ok testRangeSelection24 (prody.tests.atomic.test_select.TestSelect.testRangeSelection24) Test range selections "beta 13.02:13.01" ... ok testRangeSelection3 (prody.tests.atomic.test_select.TestSelect.testRangeSelection3) Test range selections 'index 0to10' for pdb3mht ... ok testRangeSelection4 (prody.tests.atomic.test_select.TestSelect.testRangeSelection4) Test range selections "index 0to10" ... ok testRangeSelection5 (prody.tests.atomic.test_select.TestSelect.testRangeSelection5) Test range selections 'serial 0:10:2' for pdb3mht ... ok testRangeSelection6 (prody.tests.atomic.test_select.TestSelect.testRangeSelection6) Test range selections "serial 0:10:2" ... ok testRangeSelection7 (prody.tests.atomic.test_select.TestSelect.testRangeSelection7) Test range selections 'serial 0:10:10' for pdb3mht ... ok testRangeSelection8 (prody.tests.atomic.test_select.TestSelect.testRangeSelection8) Test range selections "serial 0:10:10" ... ok testRangeSelection9 (prody.tests.atomic.test_select.TestSelect.testRangeSelection9) Test range selections 'resnum 10to15' for pdb3mht ... ok testRegexpSelection1 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection1) Test regexp selections 'resname "S.."' for pdb3mht ... ok testRegexpSelection10 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection10) Test regexp selections "name "C((A|B)"" ... ok testRegexpSelection2 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection2) Test regexp selections "resname "S.."" ... ok testRegexpSelection3 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection3) Test regexp selections 'name "C.*"' for pdb3mht ... ok testRegexpSelection4 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection4) Test regexp selections "name "C.*"" ... ok testRegexpSelection5 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection5) Test regexp selections 'name ".*\'"' for pdb3mht ... ok testRegexpSelection6 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection6) Test regexp selections "name ".*'"" ... ok testRegexpSelection7 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection7) Test regexp selections 'name "C(A|B)"' for pdb3mht ... ok testRegexpSelection8 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection8) Test regexp selections "name "C(A|B)"" ... ok testRegexpSelection9 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection9) Test regexp selections 'name "C((A|B)"' for pdb3mht ... ok testSameasSelection1 (prody.tests.atomic.test_select.TestSelect.testSameasSelection1) Test sameas selections 'same residue as index 0' for pdb3mht ... ok testSameasSelection10 (prody.tests.atomic.test_select.TestSelect.testSameasSelection10) Test sameas selections "same chain as chain C" ... ok testSameasSelection11 (prody.tests.atomic.test_select.TestSelect.testSameasSelection11) Test sameas selections 'same residue as chain X' for pdb3mht ... ok testSameasSelection12 (prody.tests.atomic.test_select.TestSelect.testSameasSelection12) Test sameas selections "same residue as chain X" ... ok testSameasSelection13 (prody.tests.atomic.test_select.TestSelect.testSameasSelection13) Test sameas selections 'same none as chain C' for pdb3mht ... ok testSameasSelection14 (prody.tests.atomic.test_select.TestSelect.testSameasSelection14) Test sameas selections "same none as chain C" ... ok testSameasSelection15 (prody.tests.atomic.test_select.TestSelect.testSameasSelection15) Test sameas selections 'same residue as same residue as same residue as index 0' for pdb3mht ... ok testSameasSelection16 (prody.tests.atomic.test_select.TestSelect.testSameasSelection16) Test sameas selections "same residue as same residue as same residue as index 0" ... ok testSameasSelection2 (prody.tests.atomic.test_select.TestSelect.testSameasSelection2) Test sameas selections "same residue as index 0" ... ok testSameasSelection3 (prody.tests.atomic.test_select.TestSelect.testSameasSelection3) Test sameas selections 'same chain as index 0' for pdb3mht ... ok testSameasSelection4 (prody.tests.atomic.test_select.TestSelect.testSameasSelection4) Test sameas selections "same chain as index 0" ... ok testSameasSelection5 (prody.tests.atomic.test_select.TestSelect.testSameasSelection5) Test sameas selections 'same segment as index 0' for pdb3mht ... ok testSameasSelection6 (prody.tests.atomic.test_select.TestSelect.testSameasSelection6) Test sameas selections "same segment as index 0" ... ok testSameasSelection7 (prody.tests.atomic.test_select.TestSelect.testSameasSelection7) Test sameas selections 'same residue as resname DG ALA' for pdb3mht ... ok testSameasSelection8 (prody.tests.atomic.test_select.TestSelect.testSameasSelection8) Test sameas selections "same residue as resname DG ALA" ... ok testSameasSelection9 (prody.tests.atomic.test_select.TestSelect.testSameasSelection9) Test sameas selections 'same chain as chain C' for pdb3mht ... ok testSequenceSelection1 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection1) Test sequence selections 'sequence al' for pdb3mht ... ok testSequenceSelection10 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection10) Test sequence selections "sequence FKPY" ... ok testSequenceSelection11 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection11) Test sequence selections 'sequence "SS."' for pdb3mht ... ok testSequenceSelection12 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection12) Test sequence selections "sequence "SS."" ... ok testSequenceSelection13 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection13) Test sequence selections 'sequence "S[A-Z]{2}G"' for pdb3mht ... ok testSequenceSelection14 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection14) Test sequence selections "sequence "S[A-Z]{2}G"" ... ok testSequenceSelection15 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection15) Test sequence selections 'sequence "S.S.S"' for pdb3mht ... ok testSequenceSelection16 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection16) Test sequence selections "sequence "S.S.S"" ... ok testSequenceSelection17 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection17) Test sequence selections 'sequence "."' for pdb3mht ... ok testSequenceSelection18 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection18) Test sequence selections "sequence "."" ... ok testSequenceSelection2 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection2) Test sequence selections "sequence al" ... ok testSequenceSelection3 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection3) Test sequence selections 'sequence A' for pdb3mht ... ok testSequenceSelection4 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection4) Test sequence selections "sequence A" ... ok testSequenceSelection5 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection5) Test sequence selections 'sequence MIEIK' for pdb3mht ... ok testSequenceSelection6 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection6) Test sequence selections "sequence MIEIK" ... ok testSequenceSelection7 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection7) Test sequence selections 'sequence VLNAL' for pdb3mht ... ok testSequenceSelection8 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection8) Test sequence selections "sequence VLNAL" ... ok testSequenceSelection9 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection9) Test sequence selections 'sequence FKPY' for pdb3mht ... ok testSpecialcharSelection1 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection1) Test specialchar selections 'altloc ` `' for pdb3mht ... ok testSpecialcharSelection2 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection2) Test specialchar selections "altloc ` `" ... ok testSpecialcharSelection3 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection3) Test specialchar selections 'name A` `CA`' for pdb3mht ... ok testSpecialcharSelection4 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection4) Test specialchar selections "name A` `CA`" ... ok testSpecialcharSelection5 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection5) Test specialchar selections 'name `A``' for pdb3mht ... ok testSpecialcharSelection6 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection6) Test specialchar selections "name `A``" ... ok testSpecialcharSelection7 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection7) Test specialchar selections 'z `+100.291`' for pdb3mht ... ok testSpecialcharSelection8 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection8) Test specialchar selections "z `+100.291`" ... ok testStringSelection1 (prody.tests.atomic.test_select.TestSelect.testStringSelection1) Test string selections 'name P' for pdb3mht ... ok testStringSelection10 (prody.tests.atomic.test_select.TestSelect.testStringSelection10) Test string selections "chain x" ... ok testStringSelection11 (prody.tests.atomic.test_select.TestSelect.testStringSelection11) Test string selections 'chain x y' for pdb3mht ... ok testStringSelection12 (prody.tests.atomic.test_select.TestSelect.testStringSelection12) Test string selections "chain x y" ... ok testStringSelection13 (prody.tests.atomic.test_select.TestSelect.testStringSelection13) Test string selections 'chain x y z' for pdb3mht ... ok testStringSelection14 (prody.tests.atomic.test_select.TestSelect.testStringSelection14) Test string selections "chain x y z" ... ok testStringSelection15 (prody.tests.atomic.test_select.TestSelect.testStringSelection15) Test string selections 'chain x y z C' for pdb3mht ... ok testStringSelection16 (prody.tests.atomic.test_select.TestSelect.testStringSelection16) Test string selections "chain x y z C" ... ok testStringSelection17 (prody.tests.atomic.test_select.TestSelect.testStringSelection17) Test string selections 'chain C D' for pdb3mht ... ok testStringSelection18 (prody.tests.atomic.test_select.TestSelect.testStringSelection18) Test string selections "chain C D" ... ok testStringSelection19 (prody.tests.atomic.test_select.TestSelect.testStringSelection19) Test string selections 'chain CD' for pdb3mht ... ok testStringSelection2 (prody.tests.atomic.test_select.TestSelect.testStringSelection2) Test string selections "name P" ... ok testStringSelection20 (prody.tests.atomic.test_select.TestSelect.testStringSelection20) Test string selections "chain CD" ... ok testStringSelection21 (prody.tests.atomic.test_select.TestSelect.testStringSelection21) Test string selections 'resname DG' for pdb3mht ... ok testStringSelection22 (prody.tests.atomic.test_select.TestSelect.testStringSelection22) Test string selections "resname DG" ... ok testStringSelection23 (prody.tests.atomic.test_select.TestSelect.testStringSelection23) Test string selections 'resname DG ALA' for pdb3mht ... ok testStringSelection24 (prody.tests.atomic.test_select.TestSelect.testStringSelection24) Test string selections "resname DG ALA" ... ok testStringSelection25 (prody.tests.atomic.test_select.TestSelect.testStringSelection25) Test string selections 'altloc A' for pdb3mht ... ok testStringSelection26 (prody.tests.atomic.test_select.TestSelect.testStringSelection26) Test string selections "altloc A" ... ok testStringSelection27 (prody.tests.atomic.test_select.TestSelect.testStringSelection27) Test string selections 'altloc _' for pdb3mht ... ok testStringSelection28 (prody.tests.atomic.test_select.TestSelect.testStringSelection28) Test string selections "altloc _" ... ok testStringSelection29 (prody.tests.atomic.test_select.TestSelect.testStringSelection29) Test string selections 'secondary H' for pdb3mht ... ok testStringSelection3 (prody.tests.atomic.test_select.TestSelect.testStringSelection3) Test string selections 'name P CA' for pdb3mht ... ok testStringSelection30 (prody.tests.atomic.test_select.TestSelect.testStringSelection30) Test string selections "secondary H" ... ok testStringSelection31 (prody.tests.atomic.test_select.TestSelect.testStringSelection31) Test string selections 'secondary H E' for pdb3mht ... ok testStringSelection32 (prody.tests.atomic.test_select.TestSelect.testStringSelection32) Test string selections "secondary H E" ... ok testStringSelection33 (prody.tests.atomic.test_select.TestSelect.testStringSelection33) Test string selections 'secondary _' for pdb3mht ... ok testStringSelection34 (prody.tests.atomic.test_select.TestSelect.testStringSelection34) Test string selections "secondary _" ... ok testStringSelection35 (prody.tests.atomic.test_select.TestSelect.testStringSelection35) Test string selections 'segment _' for pdb3mht ... ok testStringSelection36 (prody.tests.atomic.test_select.TestSelect.testStringSelection36) Test string selections "segment _" ... ok testStringSelection4 (prody.tests.atomic.test_select.TestSelect.testStringSelection4) Test string selections "name P CA" ... ok testStringSelection5 (prody.tests.atomic.test_select.TestSelect.testStringSelection5) Test string selections 'name `A 1`' for pdb3mht ... ok testStringSelection6 (prody.tests.atomic.test_select.TestSelect.testStringSelection6) Test string selections "name `A 1`" ... ok testStringSelection7 (prody.tests.atomic.test_select.TestSelect.testStringSelection7) Test string selections 'chain C' for pdb3mht ... ok testStringSelection8 (prody.tests.atomic.test_select.TestSelect.testStringSelection8) Test string selections "chain C" ... ok testStringSelection9 (prody.tests.atomic.test_select.TestSelect.testStringSelection9) Test string selections 'chain x' for pdb3mht ... ok testSynonymsSelection1 (prody.tests.atomic.test_select.TestSelect.testSynonymsSelection1) Test synonyms selections 'chain C' for pdb3mht ... ok testSynonymsSelection2 (prody.tests.atomic.test_select.TestSelect.testSynonymsSelection2) Test synonyms selections "chain C" ... ok testSynonymsSelection3 (prody.tests.atomic.test_select.TestSelect.testSynonymsSelection3) Test synonyms selections 'chain C D' for pdb3mht ... ok testSynonymsSelection4 (prody.tests.atomic.test_select.TestSelect.testSynonymsSelection4) Test synonyms selections "chain C D" ... ok testUnintendedSelection1 (prody.tests.atomic.test_select.TestSelect.testUnintendedSelection1) Test unintended selections 'abs beta = beta' for pdb3mht ... ok testUnintendedSelection2 (prody.tests.atomic.test_select.TestSelect.testUnintendedSelection2) Test unintended selections "abs beta = beta" ... ok testUserdataSelection1 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection1) Test userdata selections 'temp < 10' for pdb3mht ... ok testUserdataSelection10 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection10) Test userdata selections "occ" ... ok testUserdataSelection11 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection11) Test userdata selections 'occ and occupancy == 1' for pdb3mht ... ok testUserdataSelection12 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection12) Test userdata selections "occ and occupancy == 1" ... ok testUserdataSelection13 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection13) Test userdata selections 'occ and occupancy == 1 and oc10 - 9 == 1' for pdb3mht ... ok testUserdataSelection14 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection14) Test userdata selections "occ and occupancy == 1 and oc10 - 9 == 1" ... ok testUserdataSelection15 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection15) Test userdata selections 'occ and occupancy == 1 and temp < 10' for pdb3mht ... ok testUserdataSelection16 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection16) Test userdata selections "occ and occupancy == 1 and temp < 10" ... ok testUserdataSelection17 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection17) Test userdata selections 'occ > 0' for pdb3mht ... ok testUserdataSelection18 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection18) Test userdata selections "occ > 0" ... ok testUserdataSelection2 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection2) Test userdata selections "temp < 10" ... ok testUserdataSelection3 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection3) Test userdata selections 'temp < 10 and chain D' for pdb3mht ... ok testUserdataSelection4 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection4) Test userdata selections "temp < 10 and chain D" ... ok testUserdataSelection5 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection5) Test userdata selections 'oc10 - 9 == 1' for pdb3mht ... ok testUserdataSelection6 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection6) Test userdata selections "oc10 - 9 == 1" ... ok testUserdataSelection7 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection7) Test userdata selections 'temp < 10' for pdb3mht ... ok testUserdataSelection8 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection8) Test userdata selections "temp < 10" ... ok testUserdataSelection9 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection9) Test userdata selections 'occ' for pdb3mht ... ok testWithinSelection1 (prody.tests.atomic.test_select.TestSelect.testWithinSelection1) Test within selections 'within 10 of index 0' for pdb3mht ... ok testWithinSelection10 (prody.tests.atomic.test_select.TestSelect.testWithinSelection10) Test within selections "within 5 of within 5 of within 5 of index 0" ... ok testWithinSelection11 (prody.tests.atomic.test_select.TestSelect.testWithinSelection11) Test within selections 'exwithin 5 of exwithin 5 of exwithin 5 of index 0' for pdb3mht ... ok testWithinSelection12 (prody.tests.atomic.test_select.TestSelect.testWithinSelection12) Test within selections "exwithin 5 of exwithin 5 of exwithin 5 of index 0" ... ok testWithinSelection13 (prody.tests.atomic.test_select.TestSelect.testWithinSelection13) Test within selections 'within 1 of pdb' for pdb3mht ... ok testWithinSelection14 (prody.tests.atomic.test_select.TestSelect.testWithinSelection14) Test within selections "within 1 of pdb" ... ok testWithinSelection15 (prody.tests.atomic.test_select.TestSelect.testWithinSelection15) Test within selections 'exwithin 1 of pdb' for pdb3mht ... ok testWithinSelection16 (prody.tests.atomic.test_select.TestSelect.testWithinSelection16) Test within selections "exwithin 1 of pdb" ... ok testWithinSelection17 (prody.tests.atomic.test_select.TestSelect.testWithinSelection17) Test within selections 'exwithin 1 of ag' for pdb3mht ... ok testWithinSelection18 (prody.tests.atomic.test_select.TestSelect.testWithinSelection18) Test within selections "exwithin 1 of ag" ... ok testWithinSelection19 (prody.tests.atomic.test_select.TestSelect.testWithinSelection19) Test within selections 'within 100 of index 10000' for pdb3mht ... ok testWithinSelection2 (prody.tests.atomic.test_select.TestSelect.testWithinSelection2) Test within selections "within 10 of index 0" ... ok testWithinSelection20 (prody.tests.atomic.test_select.TestSelect.testWithinSelection20) Test within selections "within 100 of index 10000" ... ok testWithinSelection3 (prody.tests.atomic.test_select.TestSelect.testWithinSelection3) Test within selections 'exwithin 100 of index 0' for pdb3mht ... ok testWithinSelection4 (prody.tests.atomic.test_select.TestSelect.testWithinSelection4) Test within selections "exwithin 100 of index 0" ... ok testWithinSelection5 (prody.tests.atomic.test_select.TestSelect.testWithinSelection5) Test within selections 'exwithin 4 of resname SAH' for pdb3mht ... ok testWithinSelection6 (prody.tests.atomic.test_select.TestSelect.testWithinSelection6) Test within selections "exwithin 4 of resname SAH" ... ok testWithinSelection7 (prody.tests.atomic.test_select.TestSelect.testWithinSelection7) Test within selections '(within 4 of water) and not water' for pdb3mht ... ok testWithinSelection8 (prody.tests.atomic.test_select.TestSelect.testWithinSelection8) Test within selections "(within 4 of water) and not water" ... ok testWithinSelection9 (prody.tests.atomic.test_select.TestSelect.testWithinSelection9) Test within selections 'within 5 of within 5 of within 5 of index 0' for pdb3mht ... ok testWithout_AndSelection1 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection1) Test without_and selections 'coil protein' for pdb3mht ... ok testWithout_AndSelection10 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection10) Test without_and selections "(protein nucleic)" ... ok testWithout_AndSelection11 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection11) Test without_and selections 'noh hetero water' for pdb3mht ... ok testWithout_AndSelection12 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection12) Test without_and selections "noh hetero water" ... ok testWithout_AndSelection13 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection13) Test without_and selections 'ca occupancy > 0' for pdb3mht ... ok testWithout_AndSelection14 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection14) Test without_and selections "ca occupancy > 0" ... ok testWithout_AndSelection15 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection15) Test without_and selections 'ca occupancy - 0 > 0' for pdb3mht ... ok testWithout_AndSelection16 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection16) Test without_and selections "ca occupancy - 0 > 0" ... ok testWithout_AndSelection17 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection17) Test without_and selections 'ca occupancy - 0 > 0 + 0' for pdb3mht ... ok testWithout_AndSelection18 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection18) Test without_and selections "ca occupancy - 0 > 0 + 0" ... ok testWithout_AndSelection19 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection19) Test without_and selections 'occupancy > ca 0' for pdb3mht ... ok testWithout_AndSelection2 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection2) Test without_and selections "coil protein" ... ok testWithout_AndSelection20 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection20) Test without_and selections "occupancy > ca 0" ... ok testWithout_AndSelection21 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection21) Test without_and selections 'noh hetero (water)' for pdb3mht ... ok testWithout_AndSelection22 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection22) Test without_and selections "noh hetero (water)" ... ok testWithout_AndSelection23 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection23) Test without_and selections 'noh hetero not (water)' for pdb3mht ... ok testWithout_AndSelection24 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection24) Test without_and selections "noh hetero not (water)" ... ok testWithout_AndSelection25 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection25) Test without_and selections '(water) hetero' for pdb3mht ... ok testWithout_AndSelection26 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection26) Test without_and selections "(water) hetero" ... ok testWithout_AndSelection27 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection27) Test without_and selections 'ca abs(beta) = beta + abs(0)' for pdb3mht ... ok testWithout_AndSelection28 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection28) Test without_and selections "ca abs(beta) = beta + abs(0)" ... ok testWithout_AndSelection3 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection3) Test without_and selections 'sidechain sc protein' for pdb3mht ... ok testWithout_AndSelection4 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection4) Test without_and selections "sidechain sc protein" ... ok testWithout_AndSelection5 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection5) Test without_and selections 'bbfull bb' for pdb3mht ... ok testWithout_AndSelection6 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection6) Test without_and selections "bbfull bb" ... ok testWithout_AndSelection7 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection7) Test without_and selections '(charged basic)' for pdb3mht ... ok testWithout_AndSelection8 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection8) Test without_and selections "(charged basic)" ... ok testWithout_AndSelection9 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection9) Test without_and selections '(protein nucleic)' for pdb3mht ... ok testSetData (prody.tests.atomic.test_subset.TestUserData.testSetData) ... ok testDatafile_1ejg (prody.tests.datafiles.TestDatafiles.testDatafile_1ejg) Test presence of "pdb1ejg.pdb" ... ok testDatafile_1ubi (prody.tests.datafiles.TestDatafiles.testDatafile_1ubi) Test presence of "pdb1ubi.pdb" ... ok testDatafile_1ubi_ca (prody.tests.datafiles.TestDatafiles.testDatafile_1ubi_ca) Test presence of "pdb1ubi_ca.pdb" ... ok testDatafile_2gb1_truncated (prody.tests.datafiles.TestDatafiles.testDatafile_2gb1_truncated) Test presence of "pdb2gb1_truncated.pdb" ... ok testDatafile_2k39_ca (prody.tests.datafiles.TestDatafiles.testDatafile_2k39_ca) Test presence of "pdb2k39_ca.pdb" ... ok testDatafile_2nwl (prody.tests.datafiles.TestDatafiles.testDatafile_2nwl) Test presence of "pdb2nwl-opm.pdb" ... ok testDatafile_3hsy (prody.tests.datafiles.TestDatafiles.testDatafile_3hsy) Test presence of "pdb3hsy.pdb" ... ok testDatafile_3mht (prody.tests.datafiles.TestDatafiles.testDatafile_3mht) Test presence of "pdb3mht.pdb" ... ok testDatafile_3o21 (prody.tests.datafiles.TestDatafiles.testDatafile_3o21) Test presence of "pdb3o21.pdb" ... ok testDatafile_3p3w (prody.tests.datafiles.TestDatafiles.testDatafile_3p3w) Test presence of "pdb3p3w.pdb" ... ok testDatafile_DI (prody.tests.datafiles.TestDatafiles.testDatafile_DI) Test presence of "msa_Cys_knot_di.dat" ... ok testDatafile_Fasta (prody.tests.datafiles.TestDatafiles.testDatafile_Fasta) Test presence of "msa_Cys_knot.fasta" ... ok testDatafile_MSA (prody.tests.datafiles.TestDatafiles.testDatafile_MSA) Test presence of "msa_3hsyA_3o21A.fasta" ... ok testDatafile_MSA_MEW (prody.tests.datafiles.TestDatafiles.testDatafile_MSA_MEW) Test presence of "msa_3hsyA_3o21A_new.fasta" ... ok testDatafile_RTER (prody.tests.datafiles.TestDatafiles.testDatafile_RTER) Test presence of "pdbRTER.pdb" ... ok testDatafile_SCA (prody.tests.datafiles.TestDatafiles.testDatafile_SCA) Test presence of "msa_Cys_knot_sca.dat" ... ok testDatafile_Selex (prody.tests.datafiles.TestDatafiles.testDatafile_Selex) Test presence of "msa_Cys_knot.slx" ... ok testDatafile_Stockholm (prody.tests.datafiles.TestDatafiles.testDatafile_Stockholm) Test presence of "msa_Cys_knot.sth" ... ok testDatafile_anm1ubi_evalues (prody.tests.datafiles.TestDatafiles.testDatafile_anm1ubi_evalues) Test presence of "anm1ubi_evalues.dat" ... ok testDatafile_anm1ubi_hessian (prody.tests.datafiles.TestDatafiles.testDatafile_anm1ubi_hessian) Test presence of "anm1ubi_hessian.coo" ... ok testDatafile_anm1ubi_vectors (prody.tests.datafiles.TestDatafiles.testDatafile_anm1ubi_vectors) Test presence of "anm1ubi_vectors.dat" ... ok testDatafile_commute1ubi (prody.tests.datafiles.TestDatafiles.testDatafile_commute1ubi) Test presence of "commute1ubi.dat" ... ok testDatafile_dcd (prody.tests.datafiles.TestDatafiles.testDatafile_dcd) Test presence of "dcd2k39_truncated.dcd" ... ok testDatafile_dssp (prody.tests.datafiles.TestDatafiles.testDatafile_dssp) Test presence of "pdb1r19_dssp.pdb" ... ok testDatafile_five_digits (prody.tests.datafiles.TestDatafiles.testDatafile_five_digits) Test presence of "pdb1tw7_step3_charmm2namd.pdb" ... ok testDatafile_gnm1ubi_evalues (prody.tests.datafiles.TestDatafiles.testDatafile_gnm1ubi_evalues) Test presence of "gnm1ubi_evalues.dat" ... ok testDatafile_gnm1ubi_kirchhoff (prody.tests.datafiles.TestDatafiles.testDatafile_gnm1ubi_kirchhoff) Test presence of "gnm1ubi_kirchhoff.coo" ... ok testDatafile_gnm1ubi_vectors (prody.tests.datafiles.TestDatafiles.testDatafile_gnm1ubi_vectors) Test presence of "gnm1ubi_vectors.dat" ... ok testDatafile_gromacs (prody.tests.datafiles.TestDatafiles.testDatafile_gromacs) Test presence of "pdb6fpj_Bb_fixed_solv_ions.pdb" ... ok testDatafile_h36 (prody.tests.datafiles.TestDatafiles.testDatafile_h36) Test presence of "pdb1tw7_step3_charmm2namd_doubled_h36.pdb" ... ok testDatafile_h36_ter (prody.tests.datafiles.TestDatafiles.testDatafile_h36_ter) Test presence of "pdb4v8r_h36.pdb" ... ok testDatafile_hex (prody.tests.datafiles.TestDatafiles.testDatafile_hex) Test presence of "pdb1tw7_step3_charmm2namd_doubled_hex.pdb" ... ok testDatafile_hex_ter (prody.tests.datafiles.TestDatafiles.testDatafile_hex_ter) Test presence of "pdb4v8r_hex.pdb" ... ok testDatafile_hit1ubi (prody.tests.datafiles.TestDatafiles.testDatafile_hit1ubi) Test presence of "hit1ubi.dat" ... ok testDatafile_long_chid_cif (prody.tests.datafiles.TestDatafiles.testDatafile_long_chid_cif) Test presence of "mmcif_6zu5.cif" ... ok testDatafile_multi_model_cif (prody.tests.datafiles.TestDatafiles.testDatafile_multi_model_cif) Test presence of "mmcif_6yfy.cif" ... ok testDatafile_multi_model_truncated (prody.tests.datafiles.TestDatafiles.testDatafile_multi_model_truncated) Test presence of "pdb2k39_truncated.pdb" ... ok testDatafile_oneatom (prody.tests.datafiles.TestDatafiles.testDatafile_oneatom) Test presence of "pdb1ejg_oneatom.pdb" ... ok testDatafile_pca2k39_cov (prody.tests.datafiles.TestDatafiles.testDatafile_pca2k39_cov) Test presence of "pca2k39_cov.coo" ... ok testDatafile_pca2k39_evalues (prody.tests.datafiles.TestDatafiles.testDatafile_pca2k39_evalues) Test presence of "pca2k39_evalues.dat" ... ok testDatafile_pca2k39_vectors (prody.tests.datafiles.TestDatafiles.testDatafile_pca2k39_vectors) Test presence of "pca2k39_vectors.dat" ... ok testDatafile_rtb2gb1_hessian (prody.tests.datafiles.TestDatafiles.testDatafile_rtb2gb1_hessian) Test presence of "rtb2gb1_hessian.coo" ... ok testDatafile_rtb2gb1_project (prody.tests.datafiles.TestDatafiles.testDatafile_rtb2gb1_project) Test presence of "rtb2gb1_project.coo" ... ok testDatafile_sti (prody.tests.datafiles.TestDatafiles.testDatafile_sti) Test presence of "xmlSTI.xml" ... ok testMode1d (prody.tests.dynamics.test_editing.TestExtending.testMode1d) ... ok testMode3d (prody.tests.dynamics.test_editing.TestExtending.testMode3d) ... ok testModel1d (prody.tests.dynamics.test_editing.TestExtending.testModel1d) ... ok testModel3d (prody.tests.dynamics.test_editing.TestExtending.testModel3d) ... ok testVector1d (prody.tests.dynamics.test_editing.TestExtending.testVector1d) ... ok testVector3d (prody.tests.dynamics.test_editing.TestExtending.testVector3d) ... ok testModel3d (prody.tests.dynamics.test_editing.TestInterpolating.testModel3d) ... ok testMode1d (prody.tests.dynamics.test_editing.TestSlicing.testMode1d) ... ok testMode3d (prody.tests.dynamics.test_editing.TestSlicing.testMode3d) ... ok testModel1d (prody.tests.dynamics.test_editing.TestSlicing.testModel1d) ... ok testModel3d (prody.tests.dynamics.test_editing.TestSlicing.testModel3d) ... ok testVector1d (prody.tests.dynamics.test_editing.TestSlicing.testVector1d) ... ok testVector3d (prody.tests.dynamics.test_editing.TestSlicing.testVector3d) ... ok testBuildHessianSlow (prody.tests.dynamics.test_enms.TestANM.testBuildHessianSlow) ... ok testBuildMatrixCoordsArray (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCoordsArray) Test output when *coords* is an array. ... ok testBuildMatrixCoordsWrongType (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCoordsWrongType) Test response to wrong type *coords* argument. ... ok testBuildMatrixCutoffInvalidValue (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCutoffInvalidValue) Test response to wrong *cutoff* argument. ... ok testBuildMatrixCutoffWrongType (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCutoffWrongType) Test response to cutoff of wrong type. ... ok testBuildMatrixInvalidGamma (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixInvalidGamma) Test response to invalid *gamma* argument. ... ok testBuildMatrixWrongCoords (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixWrongCoords) Test response to wrong coords.dtype. ... ok testBuildMatrixWrongGamma (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixWrongGamma) Test response to wrong *gamma* argument. ... ok testSetHessianWrongShape (prody.tests.dynamics.test_enms.TestANM.testSetHessianWrongShape) Test response to wrong shape *hessian* argument. ... ok testSetMatrixAcceptableDtype (prody.tests.dynamics.test_enms.TestANM.testSetMatrixAcceptableDtype) Test response to acceptable matrix.dtype. ... ok testSetMatrixNonSquare (prody.tests.dynamics.test_enms.TestANM.testSetMatrixNonSquare) Test response to non-square matrix. ... ok testSetMatrixWrongDim (prody.tests.dynamics.test_enms.TestANM.testSetMatrixWrongDim) Test response to wrong dim *kirchhoff* argument. ... ok testSetMatrixWrongDtype (prody.tests.dynamics.test_enms.TestANM.testSetMatrixWrongDtype) Test response to wrong matrix.dtype. ... ok testSetMatrixWrongType (prody.tests.dynamics.test_enms.TestANM.testSetMatrixWrongType) Test response to wrong matrix type argument. ... ok testEigenvalues (prody.tests.dynamics.test_enms.TestANMResults.testEigenvalues) Test eigenvalues. ... ok testEigenvectors (prody.tests.dynamics.test_enms.TestANMResults.testEigenvectors) Test eigenvectors. ... ok testGetCutoff (prody.tests.dynamics.test_enms.TestANMResults.testGetCutoff) Testing return type of :meth:`~.GNMBase.getCutoff`. ... ok testGetGamma (prody.tests.dynamics.test_enms.TestANMResults.testGetGamma) Testing return type of :meth:`~.GNMBase.getGamma`. ... ok testGetHessian (prody.tests.dynamics.test_enms.TestANMResults.testGetHessian) ... ok testHessian (prody.tests.dynamics.test_enms.TestANMResults.testHessian) Test Hessian matrix. ... ok testHessianSums (prody.tests.dynamics.test_enms.TestANMResults.testHessianSums) ... ok testHessianSymmetry (prody.tests.dynamics.test_enms.TestANMResults.testHessianSymmetry) ... ok testModeSlicing (prody.tests.dynamics.test_enms.TestANMResults.testModeSlicing) ... ok testVariances (prody.tests.dynamics.test_enms.TestANMResults.testVariances) Test variances. ... ok testEigenvalues (prody.tests.dynamics.test_enms.TestEXANMResults.testEigenvalues) Test eigenvalues. ... ok testEigenvectors (prody.tests.dynamics.test_enms.TestEXANMResults.testEigenvectors) Test eigenvectors. ... ok testGetCutoff (prody.tests.dynamics.test_enms.TestEXANMResults.testGetCutoff) Testing return type of :meth:`~.GNMBase.getCutoff`. ... ok testGetGamma (prody.tests.dynamics.test_enms.TestEXANMResults.testGetGamma) Testing return type of :meth:`~.GNMBase.getGamma`. ... ok testGetHessian (prody.tests.dynamics.test_enms.TestEXANMResults.testGetHessian) ... ok testHessian (prody.tests.dynamics.test_enms.TestEXANMResults.testHessian) Test Hessian matrix. ... ok testHessianSums (prody.tests.dynamics.test_enms.TestEXANMResults.testHessianSums) ... ok testHessianSymmetry (prody.tests.dynamics.test_enms.TestEXANMResults.testHessianSymmetry) ... ok testVariances (prody.tests.dynamics.test_enms.TestEXANMResults.testVariances) Test variances. ... ok testBuildMatrixCoordsArray (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixCoordsArray) Test output when *coords* is an array. ... ok testBuildMatrixCoordsWrongType (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixCoordsWrongType) Test response to wrong type *coords* argument. ... ok testBuildMatrixCutoffInvalidValue (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixCutoffInvalidValue) Test response to wrong *cutoff* argument. ... ok testBuildMatrixCutoffWrongType (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixCutoffWrongType) Test response to cutoff of wrong type. ... ok testBuildMatrixInvalidGamma (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixInvalidGamma) Test response to invalid *gamma* argument. ... ok testBuildMatrixWrongCoords (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixWrongCoords) Test response to wrong coords.dtype. ... ok testBuildMatrixWrongGamma (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixWrongGamma) Test response to wrong *gamma* argument. ... ok testSetMatrixAcceptableDtype (prody.tests.dynamics.test_enms.TestGNM.testSetMatrixAcceptableDtype) Test response to acceptable matrix.dtype. ... ok testSetMatrixNonSquare (prody.tests.dynamics.test_enms.TestGNM.testSetMatrixNonSquare) Test response to non-square matrix. ... ok testSetMatrixWrongDim (prody.tests.dynamics.test_enms.TestGNM.testSetMatrixWrongDim) Test response to wrong dim *kirchhoff* argument. ... ok testSetMatrixWrongDtype (prody.tests.dynamics.test_enms.TestGNM.testSetMatrixWrongDtype) Test response to wrong matrix.dtype. ... ok testSetMatrixWrongType (prody.tests.dynamics.test_enms.TestGNM.testSetMatrixWrongType) Test response to wrong matrix type argument. ... ok testBuildKirchoffSlow (prody.tests.dynamics.test_enms.TestGNMResults.testBuildKirchoffSlow) ... ok testCommuteTime (prody.tests.dynamics.test_enms.TestGNMResults.testCommuteTime) ... ok testEigenvalues (prody.tests.dynamics.test_enms.TestGNMResults.testEigenvalues) ... ok testEigenvectors (prody.tests.dynamics.test_enms.TestGNMResults.testEigenvectors) ... ok testGetCutoff (prody.tests.dynamics.test_enms.TestGNMResults.testGetCutoff) Testing return type of :meth:`~.GNMBase.getCutoff`. ... ok testGetGamma (prody.tests.dynamics.test_enms.TestGNMResults.testGetGamma) Testing return type of :meth:`~.GNMBase.getGamma`. ... ok testGetKirchoff (prody.tests.dynamics.test_enms.TestGNMResults.testGetKirchoff) ... ok testKirchhoff (prody.tests.dynamics.test_enms.TestGNMResults.testKirchhoff) ... ok testKirchhoffSums (prody.tests.dynamics.test_enms.TestGNMResults.testKirchhoffSums) ... ok testKirchhoffSymmetry (prody.tests.dynamics.test_enms.TestGNMResults.testKirchhoffSymmetry) ... ok testCalcModes (prody.tests.dynamics.test_enms.TestRTB.testCalcModes) ... /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/eigtools.py:43: DeprecationWarning: Keyword argument 'eigvals' is deprecated in favour of 'subset_by_index' keyword instead and will be removed in SciPy 1.12.0. values, vectors = linalg.eigh(M, turbo=turbo, eigvals=eigvals) ok testHessian (prody.tests.dynamics.test_enms.TestRTB.testHessian) ... ok testProjection (prody.tests.dynamics.test_enms.TestRTB.testProjection) ... ok testGetCutoff (prody.tests.dynamics.test_enms.testGNMBase.testGetCutoff) Testing return type of :meth:`~.GNMBase.getCutoff`. ... ok testGetGamma (prody.tests.dynamics.test_enms.testGNMBase.testGetGamma) Testing return type of :meth:`~.GNMBase.getGamma`. ... ok testBuildMatrixCoordsArray (prody.tests.dynamics.test_pca.TestPCA.testBuildMatrixCoordsArray) Test output when *coords* is an array. ... ok testBuildMatrixCoordsWrongType (prody.tests.dynamics.test_pca.TestPCA.testBuildMatrixCoordsWrongType) Test response to wrong type *coords* argument. ... ok testBuildMatrixWrongCoords (prody.tests.dynamics.test_pca.TestPCA.testBuildMatrixWrongCoords) Test response to wrong coords.dtype. ... ok testSetMatrixAcceptableDtype (prody.tests.dynamics.test_pca.TestPCA.testSetMatrixAcceptableDtype) Test response to acceptable matrix.dtype. ... ok testSetMatrixNonSquare (prody.tests.dynamics.test_pca.TestPCA.testSetMatrixNonSquare) Test response to non-square matrix. ... ok testSetMatrixWrongDim (prody.tests.dynamics.test_pca.TestPCA.testSetMatrixWrongDim) Test response to wrong dim *kirchhoff* argument. ... ok testSetMatrixWrongDtype (prody.tests.dynamics.test_pca.TestPCA.testSetMatrixWrongDtype) Test response to wrong matrix.dtype. ... ok testSetMatrixWrongType (prody.tests.dynamics.test_pca.TestPCA.testSetMatrixWrongType) Test response to wrong matrix type argument. ... ok testBuildMatrixCoordsArray (prody.tests.dynamics.test_pca.TestPCAResults.testBuildMatrixCoordsArray) Test output when *coords* is an array. ... ok testBuildMatrixCoordsWrongType (prody.tests.dynamics.test_pca.TestPCAResults.testBuildMatrixCoordsWrongType) Test response to wrong type *coords* argument. ... ok testBuildMatrixWrongCoords (prody.tests.dynamics.test_pca.TestPCAResults.testBuildMatrixWrongCoords) Test response to wrong coords.dtype. ... ok testCovariance (prody.tests.dynamics.test_pca.TestPCAResults.testCovariance) ... ok testCovarianceSymmetry (prody.tests.dynamics.test_pca.TestPCAResults.testCovarianceSymmetry) ... ok testEigenvalues (prody.tests.dynamics.test_pca.TestPCAResults.testEigenvalues) ... ok testEigenvectors (prody.tests.dynamics.test_pca.TestPCAResults.testEigenvectors) ... ok testNumModesAll (prody.tests.dynamics.test_pca.TestPCAResults.testNumModesAll) ... ok testNumModesSet (prody.tests.dynamics.test_pca.TestPCAResults.testNumModesSet) ... ok testSetMatrixAcceptableDtype (prody.tests.dynamics.test_pca.TestPCAResults.testSetMatrixAcceptableDtype) Test response to acceptable matrix.dtype. ... ok testSetMatrixNonSquare (prody.tests.dynamics.test_pca.TestPCAResults.testSetMatrixNonSquare) Test response to non-square matrix. ... ok testSetMatrixWrongDim (prody.tests.dynamics.test_pca.TestPCAResults.testSetMatrixWrongDim) Test response to wrong dim *kirchhoff* argument. ... ok testSetMatrixWrongDtype (prody.tests.dynamics.test_pca.TestPCAResults.testSetMatrixWrongDtype) Test response to wrong matrix.dtype. ... ok testSetMatrixWrongType (prody.tests.dynamics.test_pca.TestPCAResults.testSetMatrixWrongType) Test response to wrong matrix type argument. ... ok testSlicing (prody.tests.dynamics.test_signature.TestSDArray.testSlicing) ... ok testCoordinates (prody.tests.ensemble.test_conformation.TestConformation.testCoordinates) ... ok testCoordinatesForAll (prody.tests.ensemble.test_conformation.TestConformation.testCoordinatesForAll) ... ok testGetIndex (prody.tests.ensemble.test_conformation.TestConformation.testGetIndex) Test get index function. ... ok testGetNumAtoms (prody.tests.ensemble.test_conformation.TestConformation.testGetNumAtoms) Test get index function. ... ok testWeights (prody.tests.ensemble.test_conformation.TestConformation.testWeights) ... ok testCoordinates (prody.tests.ensemble.test_conformation.TestPDBConformation.testCoordinates) ... ok testCoordinatesForAll (prody.tests.ensemble.test_conformation.TestPDBConformation.testCoordinatesForAll) ... ok testGetIndex (prody.tests.ensemble.test_conformation.TestPDBConformation.testGetIndex) ... ok testGetNumAtoms (prody.tests.ensemble.test_conformation.TestPDBConformation.testGetNumAtoms) ... ok testWeights (prody.tests.ensemble.test_conformation.TestPDBConformation.testWeights) ... ok testWeightsForAll (prody.tests.ensemble.test_conformation.TestPDBConformation.testWeightsForAll) ... ok testConcatenation (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenation) Test concatenation of ensembles without weights. ... ok testConcatenationNoweightsWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenationNoweightsWeights) Test concatenation of ensembles without and with weights. ... ok testConcatenationWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenationWeights) Test concatenation of ensembles with weights. ... ok testConcatenationWeightsNoweights (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenationWeightsNoweights) Test concatenation of ensembles with and without weights. ... ok testDelCoordsetAll (prody.tests.ensemble.test_ensemble.TestEnsemble.testDelCoordsetAll) ... ok testDelCoordsetMiddle (prody.tests.ensemble.test_ensemble.TestEnsemble.testDelCoordsetMiddle) ... ok testGetCoordinates (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetCoordinates) Test correctness of reference coordinates. ... ok testGetCoordsets (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetCoordsets) Test correctness of all coordinates. ... ok testGetNumAtoms (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetNumAtoms) ... ok testGetNumCsets (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetNumCsets) ... ok testGetRMSDs (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetRMSDs) ... ok testGetRMSDsWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetRMSDsWeights) ... ok testGetWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetWeights) Test correctness of all weights. ... ok testIterCoordsets (prody.tests.ensemble.test_ensemble.TestEnsemble.testIterCoordsets) Test coordinate iteration. ... ok testSelection (prody.tests.ensemble.test_ensemble.TestEnsemble.testSelection) Test atom selection of ensemble. ... ok testSlicing (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicing) Test slicing operation. ... ok testSlicingCopy (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicingCopy) Test making a copy by slicing operation. ... ok testSlicingList (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicingList) Test slicing with a list. ... ok testSlicingWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicingWeights) Test slicing operation with weights. ... ok testSuperpose (prody.tests.ensemble.test_ensemble.TestEnsemble.testSuperpose) ... ok testSuperposeWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testSuperposeWeights) ... ok testResults (prody.tests.ensemble.test_functions.TestBuildPDBEnsemble.testResults) ... ok testInvalidType (prody.tests.ensemble.test_functions.TestCalcOccupancies.testInvalidType) ... ok testResults (prody.tests.ensemble.test_functions.TestCalcOccupancies.testResults) ... ok testWeightsNone (prody.tests.ensemble.test_functions.TestCalcOccupancies.testWeightsNone) ... ok testResults (prody.tests.ensemble.test_functions.TestTrimPDBEnsemble.testResults) ... /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/sequence.py:52: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return self._array.tostring().decode() ok testAddCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testAddCoordsets) ... ok testConcatenation (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testConcatenation) Test concatenation of PDB ensembles. ... ok testDelCoordsetAll (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testDelCoordsetAll) Test consequences of deleting all coordinate sets. ... ok testDelCoordsetMiddle (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testDelCoordsetMiddle) ... ok testDelCoordsetMiddleTrans (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testDelCoordsetMiddleTrans) ... ok testGetCoordinates (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetCoordinates) ... ok testGetCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetCoordsets) ... ok testGetNumAtoms (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetNumAtoms) ... ok testGetNumCsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetNumCsets) ... ok testGetWeights (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetWeights) ... ok testIterCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testIterCoordsets) ... ok testSlicing (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicing) ... ok testSlicingCopy (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicingCopy) ... ok testSlicingList (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicingList) ... ok testSlicingWeights (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicingWeights) ... ok testAllSearch (prody.tests.kdtree.test_kdtree.TestKDTree.testAllSearch) ... ok testSearch (prody.tests.kdtree.test_kdtree.TestKDTree.testSearch) ... ok testPairNoPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPairNoPBC) ... ok testPairPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPairPBC) ... ok testPointNoPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPointNoPBC) ... ok testPointPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPointPBC) ... ok testMINvsMAX (prody.tests.measure.test_contacts.TestContacts.testMINvsMAX) ... ok testPBCvsNONE (prody.tests.measure.test_contacts.TestContacts.testPBCvsNONE) ... ok testAtomicArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testAtomicArgumentSwitching) ... ok testCoordArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testCoordArgumentSwitching) ... ok testNoPBC (prody.tests.measure.test_contacts.TestNeighbors.testNoPBC) ... ok testPBC (prody.tests.measure.test_contacts.TestNeighbors.testPBC) ... ok testPBCAtomicArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testPBCAtomicArgumentSwitching) ... ok testPBCCoordArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testPBCCoordArgumentSwitching) ... ok testCenter (prody.tests.measure.test_measure.TestCenter.testCenter) ... ok testCenterWithWeights (prody.tests.measure.test_measure.TestCenter.testCenterWithWeights) ... ok testMultiCoordsets (prody.tests.measure.test_measure.TestCenter.testMultiCoordsets) ... ok testMultiCoordsetsWithWeights (prody.tests.measure.test_measure.TestCenter.testMultiCoordsetsWithWeights) ... ok testCTerPhi (prody.tests.measure.test_measure.TestDihedrals.testCTerPhi) ... ok testCTerPsi (prody.tests.measure.test_measure.TestDihedrals.testCTerPsi) ... ok testCalcPhi (prody.tests.measure.test_measure.TestDihedrals.testCalcPhi) ... ok testCalcPsi (prody.tests.measure.test_measure.TestDihedrals.testCalcPsi) ... ok testNTerPhi (prody.tests.measure.test_measure.TestDihedrals.testNTerPhi) ... ok testNTerPsi (prody.tests.measure.test_measure.TestDihedrals.testNTerPsi) ... ok testPBC (prody.tests.measure.test_measure.TestDistances.testPBC) ... ok testPBCSymmetry (prody.tests.measure.test_measure.TestDistances.testPBCSymmetry) ... ok testMSF (prody.tests.measure.test_measure.TestMSF.testMSF) ... /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/dcdfile.py:273: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead xyz = fromstring(self._file.read(self._itemsize * n_floats), /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/dcdfile.py:320: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead data = fromstring(data, self._dtype) /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/dcdfile.py:294: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead unitcell = fromstring(self._file.read(48), dtype=np.float64) ok testMSFfloat (prody.tests.measure.test_measure.TestMSF.testMSFfloat) ... ok testByArgument (prody.tests.measure.test_transform.TestMoveAtoms.testByArgument) ... ok testToArgument (prody.tests.measure.test_transform.TestMoveAtoms.testToArgument) ... ok testTransformation (prody.tests.measure.test_transform.TestMoveAtoms.testTransformation) ... ok testWrap (prody.tests.measure.test_transform.TestWrapAtoms.testWrap) ... ok testAgArgMultiModel (prody.tests.proteins.test_ciffile.TestParseMMCIF.testAgArgMultiModel) Test number of coordinate sets when using *ag* arguments. ... ok testAgArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testAgArgument) Test outcome of valid and invalid *ag* arguments. ... /usr/lib/python3.11/traceback.py:237: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/mmcif_6yfy.cif' mode='rt' encoding='UTF-8'> tb.tb_frame.clear() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testChainArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testChainArgument) Test outcome of valid and invalid *chain* arguments. ... ok testLongChainArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testLongChainArgument) Test outcome of valid and invalid *chain* arguments. ... /usr/lib/python3.11/traceback.py:237: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/mmcif_6zu5.cif' mode='rt' encoding='UTF-8'> tb.tb_frame.clear() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testModelArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testModelArgument) Test outcome of valid and invalid *model* arguments. ... ok testPDBArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testPDBArgument) Test outcome of invalid *pdb* arguments. ... ok testSubsetArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testSubsetArgument) Test outcome of valid and invalid *subset* arguments. ... ok testTitleArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testTitleArgument) Test outcome of *title* argument. ... ok testUsualCase (prody.tests.proteins.test_ciffile.TestParseMMCIF.testUsualCase) Test the outcome of a simple parsing scenario. ... ok testDSSPBridgePartners (prody.tests.proteins.test_dssp.TestDSSPFunctions.testDSSPBridgePartners) Check if the DSSP bridge-partners were correctly parsed and ... skipped 'dssp is not found' testHeaderContent (prody.tests.proteins.test_header.TestParsePDBHeaderOnly.testHeaderContent) ... ok testHeaderType (prody.tests.proteins.test_header.TestParsePDBHeaderOnly.testHeaderType) ... ok testCompressedArgument (prody.tests.proteins.test_localpdb.TestFetchPDB.testCompressedArgument) Test decompressing fetched PDB files. ... skipped 'Not running tests needing network access.' testFetchingMultipleFiles (prody.tests.proteins.test_localpdb.TestFetchPDB.testFetchingMultipleFiles) Test the outcome of fetching multiple PDB files. ... skipped 'Not running tests needing network access.' testFetchingSingleFile (prody.tests.proteins.test_localpdb.TestFetchPDB.testFetchingSingleFile) Test the outcome of fetching a single PDB file. ... skipped 'Not running tests needing network access.' testInvalidPDBIdentifier (prody.tests.proteins.test_localpdb.TestFetchPDB.testInvalidPDBIdentifier) Test outcome of passing invalid PDB identifiers. ... ok testAgArgMultiModel (prody.tests.proteins.test_pdbfile.TestParsePDB.testAgArgMultiModel) Test number of coordinate sets when using *ag* arguments. ... ok testAgArgSingleModel (prody.tests.proteins.test_pdbfile.TestParsePDB.testAgArgSingleModel) Test number of coordinate sets when using *ag* arguments. ... ok testAgArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testAgArgument) Test outcome of valid and invalid *ag* arguments. ... /usr/lib/python3.11/traceback.py:237: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb2k39_truncated.pdb' mode='rt' encoding='UTF-8'> tb.tb_frame.clear() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testChainArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testChainArgument) Test outcome of valid and invalid *chain* arguments. ... ok testFiveDigitResnum (prody.tests.proteins.test_pdbfile.TestParsePDB.testFiveDigitResnum) Test parsing PDB files with five digit resnums ... ok testHexResnum (prody.tests.proteins.test_pdbfile.TestParsePDB.testHexResnum) Test parsing PDB files with hexadecimal resnums ... ok testHexSerial (prody.tests.proteins.test_pdbfile.TestParsePDB.testHexSerial) Test parsing PDB files with hexadecimal serial numbers ... ok testHybrid36Resnum (prody.tests.proteins.test_pdbfile.TestParsePDB.testHybrid36Resnum) Test parsing PDB files with Hybrid36 resnums ... ok testHybrid36Serial (prody.tests.proteins.test_pdbfile.TestParsePDB.testHybrid36Serial) Test parsing PDB files with Hybrid36 serial numbers ... ok testModelArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testModelArgument) Test outcome of valid and invalid *model* arguments. ... ok testPDBArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testPDBArgument) Test outcome of invalid *pdb* arguments. ... ok testSubsetArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testSubsetArgument) Test outcome of valid and invalid *subset* arguments. ... ok testTitleArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testTitleArgument) Test outcome of *title* argument. ... ok testUsualCase (prody.tests.proteins.test_pdbfile.TestParsePDB.testUsualCase) Test the outcome of a simple parsing scenario. ... ok testAltlocA (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc.testAltlocA) ... ok testAltlocB (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc.testAltlocB) ... ok testAltlocC (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc.testAltlocC) ... ok testAltlocNone (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc.testAltlocNone) ... ok testAtomGroupContent (prody.tests.proteins.test_pdbfile.TestParsePDBHeaderAndAllModels.testAtomGroupContent) ... ok testAtomGroupType (prody.tests.proteins.test_pdbfile.TestParsePDBHeaderAndAllModels.testAtomGroupType) ... ok testModelArgument (prody.tests.proteins.test_pdbfile.TestWritePDB.testModelArgument) Test valid and invalid model arguments. ... /usr/lib/python3.11/traceback.py:237: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/test.pdb' mode='wt' encoding='UTF-8'> tb.tb_frame.clear() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParsingOutput (prody.tests.proteins.test_pdbfile.TestWritePDB.testParsingOutput) Test if parsing output is the same as parsing original file. ... ok testWritingHex (prody.tests.proteins.test_pdbfile.TestWritePDB.testWritingHex) Test if output from writing hexadecimal is as expected. ... ok testWritingHexTer (prody.tests.proteins.test_pdbfile.TestWritePDB.testWritingHexTer) Test if output from writing hexadecimal with TER lines is as expected. ... ok testWritingHybrid36 (prody.tests.proteins.test_pdbfile.TestWritePDB.testWritingHybrid36) Test if output from writing Hybrid36 is as expected. ... ok testWritingHybrid36Ter (prody.tests.proteins.test_pdbfile.TestWritePDB.testWritingHybrid36Ter) Test if output from writing Hybrid36 with TER lines is as expected. ... ok testWritingSecstrs (prody.tests.proteins.test_pdbfile.TestWritePDB.testWritingSecstrs) Test if output from writing secstrs is as expected. ... ok testCompressed (prody.tests.proteins.test_wwpdb.TestFTP.testCompressed) ... skipped 'Not running tests needing network access.' testDecompressed (prody.tests.proteins.test_wwpdb.TestFTP.testDecompressed) ... skipped 'Not running tests needing network access.' testCompressed (prody.tests.proteins.test_wwpdb.TestHTTP.testCompressed) ... skipped 'Not running tests needing network access.' testDecompressed (prody.tests.proteins.test_wwpdb.TestHTTP.testDecompressed) ... skipped 'Not running tests needing network access.' testBuildMSAlocal (prody.tests.sequence.test_analysis.TestBuildMSA.testBuildMSAlocal) ... /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msa.py:218: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison return all(other == self._msa) ok testResidueCount (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testResidueCount) ... ok testResidueOccupancy (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testResidueOccupancy) ... ok testSequenceCount (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testSequenceCount) ... ok testSequenceOccupancy (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testSequenceOccupancy) ... ok testMATLAB (prody.tests.sequence.test_analysis.TestCalcMeff.testMATLAB) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcMeff.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcMeff.testTwentyReversed) ... ok testZero1 (prody.tests.sequence.test_analysis.TestCalcMeff.testZero1) ... ok testZero2 (prody.tests.sequence.test_analysis.TestCalcMeff.testZero2) ... ok testAmbiguity (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity) ... ok testAmbiguity2 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity2) ... ok testAmbiguity3 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity3) ... ok testAmbiguity4 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity4) ... ok testAmbiguity5 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity5) ... ok testAmbiguity6 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity6) ... ok testAmbiguity7 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity7) ... ok testInf (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testInf) ... ok testNoAmbiguity (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testNoAmbiguity) ... ok testNorm (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testNorm) ... ok testNorm2 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testNorm2) ... ok testSixSequences (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testSixSequences) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testTwentyReversed) ... ok testAmbiguity (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity) ... ok testAmbiguity2 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity2) ... ok testAmbiguity3 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity3) ... ok testAmbiguity4 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity4) ... ok testAmbiguity5 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity5) ... ok testAmbiguity6 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity6) ... ok testAmbiguity7 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity7) ... ok testFourSequences (prody.tests.sequence.test_analysis.TestCalcOMES.testFourSequences) ... ok testInf (prody.tests.sequence.test_analysis.TestCalcOMES.testInf) ... ok testNoAmbiguity (prody.tests.sequence.test_analysis.TestCalcOMES.testNoAmbiguity) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcOMES.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcOMES.testTwentyReversed) ... ok testZero (prody.tests.sequence.test_analysis.TestCalcOMES.testZero) ... ok testMATLAB (prody.tests.sequence.test_analysis.TestCalcSCA.testMATLAB) ... ok testZero (prody.tests.sequence.test_analysis.TestCalcSCA.testZero) ... ok testAmbiguous (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testAmbiguous) ... ok testGapDividend (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testGapDividend) ... ok testSixSequences (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testSixSequences) ... ok testSmallProbability (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testSmallProbability) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testTwenty) ... ok testMATLAB10 (prody.tests.sequence.test_analysis.TestDirectInfo.testMATLAB10) ... /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/analysis.py:592: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. c = matrix.dot(matrix(zeros((length*q, 1), float)), /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/analysis.py:593: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. matrix(zeros((1, length*q), float))) /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:69: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return matrix(data, dtype=dtype, copy=False) ok testMATLAB8 (prody.tests.sequence.test_analysis.TestDirectInfo.testMATLAB8) ... ok testTwenty (prody.tests.sequence.test_analysis.TestDirectInfo.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestDirectInfo.testTwentyReversed) ... ok testZero (prody.tests.sequence.test_analysis.TestDirectInfo.testZero) ... ok testZero1 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero1) ... ok testZero2 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero2) ... ok testZero3 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero3) ... ok testZero4 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero4) ... ok testIdentityMatrix (prody.tests.sequence.test_analysis.TestIdentity.testIdentityMatrix) ... ok testIdentityMatrixNonTurbo (prody.tests.sequence.test_analysis.TestIdentity.testIdentityMatrixNonTurbo) ... ok testUnique (prody.tests.sequence.test_analysis.TestUnique.testUnique) ... ok testUnique2 (prody.tests.sequence.test_analysis.TestUnique.testUnique2) ... ok testMerge (prody.tests.sequence.test_msa.TestMerging.testMerge) ... ok testAddition (prody.tests.sequence.test_msa.TestRefinement.testAddition) ... ok testAll (prody.tests.sequence.test_msa.TestRefinement.testAll) ... ok testColocc (prody.tests.sequence.test_msa.TestRefinement.testColocc) ... ok testExtension (prody.tests.sequence.test_msa.TestRefinement.testExtension) ... ok testLabel (prody.tests.sequence.test_msa.TestRefinement.testLabel) ... ok testRowCol (prody.tests.sequence.test_msa.TestRefinement.testRowCol) ... ok testRowocc (prody.tests.sequence.test_msa.TestRefinement.testRowocc) ... ok testSeqid (prody.tests.sequence.test_msa.TestRefinement.testSeqid) ... ok testSeqidLabel (prody.tests.sequence.test_msa.TestRefinement.testSeqidLabel) ... ok testMSAFile (prody.tests.sequence.test_msafile.TestMSAFile.testMSAFile) ... ok testWriteFasta (prody.tests.sequence.test_msafile.TestMSAFile.testWriteFasta) ... /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/sequence.py:32: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead self._seq = fromstring(one, '|S1') ok testWriteSelex (prody.tests.sequence.test_msafile.TestMSAFile.testWriteSelex) ... ok testWriteStockholm (prody.tests.sequence.test_msafile.TestMSAFile.testWriteStockholm) ... ok testArray (prody.tests.sequence.test_msafile.TestParseMSA.testArray) ... ok testIterator (prody.tests.sequence.test_msafile.TestParseMSA.testIterator) ... ok testMapping (prody.tests.sequence.test_msafile.TestParseMSA.testMapping) ... ok testFasta (prody.tests.sequence.test_msafile.TestWriteMSA.testFasta) ... ok testSelex (prody.tests.sequence.test_msafile.TestWriteMSA.testSelex) ... ok testStringConversion (prody.tests.sequence.test_sequence.TestSequence.testStringConversion) ... /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/sequence.py:36: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead self._seq = fromstring(args[0], '|S1') ok testParseDCD (prody.tests.trajectory.test_dcdfile.TestDCDFile.testParseDCD) ... ok testWrite (prody.tests.trajectory.test_dcdfile.TestDCDFile.testWrite) ... ok testWriteDCD (prody.tests.trajectory.test_dcdfile.TestDCDFile.testWriteDCD) ... ok testWriteModeAppend (prody.tests.trajectory.test_dcdfile.TestDCDFile.testWriteModeAppend) ... ok testAll (prody.tests.trajectory.test_frame.TestSuperpose.testAll) ... ok testCarbon (prody.tests.trajectory.test_frame.TestSuperpose.testCarbon) ... ok testCoords (prody.tests.utilities.test_checkers.TestCheckCoords.testCoords) ... ok testCoordset (prody.tests.utilities.test_checkers.TestCheckCoords.testCoordset) ... ok testCoordsetNatoms (prody.tests.utilities.test_checkers.TestCheckCoords.testCoordsetNatoms) ... ok testInvalidCoords (prody.tests.utilities.test_checkers.TestCheckCoords.testInvalidCoords) ... ok testCorrectMonotypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testCorrectMonotypeOneArg) ... ok testCorrectMonotypeTwoArgs (prody.tests.utilities.test_checkers.testCheckTypes.testCorrectMonotypeTwoArgs) ... ok testCorrectMultitypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testCorrectMultitypeOneArg) ... ok testWrongMonotypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testWrongMonotypeOneArg) ... ok testWrongMonotypeTwoArgs (prody.tests.utilities.test_checkers.testCheckTypes.testWrongMonotypeTwoArgs) ... ok testWrongMultitypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testWrongMultitypeOneArg) ... ok testContinuous (prody.tests.utilities.test_misctools.TestRangeString.testContinuous) ... ok testGapped (prody.tests.utilities.test_misctools.TestRangeString.testGapped) ... ok testNegative (prody.tests.utilities.test_misctools.TestRangeString.testNegative) ... ok testRepeated (prody.tests.utilities.test_misctools.TestRangeString.testRepeated) ... ok testBuffer (prody.tests.utilities.test_pathtools.TestGunzip.testBuffer) ... /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/test_pathtools.py:34: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/compressed.txt.gz'> buff = open(self.gzfn, 'rb').read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFile (prody.tests.utilities.test_pathtools.TestGunzip.testFile) ... /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/test_pathtools.py:29: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/compressed.txt' mode='r' encoding='UTF-8'> text = open(fn).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok ---------------------------------------------------------------------- Ran 971 tests in 391.389s OK (skipped=39) I: pybuild base:305: cd /<>/.pybuild/cpython3_3.12_prody/build; python3.12 -m unittest discover -v /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' """Returns wrapped lines from :func:`textwrap.wrap` after *join*\ing them. /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' __doc__ += """ /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' """This module defines a class for selecting subsets of atoms. You can read /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' RE_SCHARS = re_compile('`[\w\W]*?`') /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' RE_REGEXP = re_compile('"[\w\W]*"') /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' _ = '[-+]?\d+(\.\d*)?([eE]\d+)?' /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' RE_NRANGE = re_compile(_ + '\ *(to|:)\ *' + _) /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' pp.Optional(pp.Regex('(\ *:\ *' + _ + ')'))) /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' """Apply one of the normalizations discussed in [MLC05]_ to *mutinfo* /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' pdbext = compile('\.(pdb|ent)(\.gz)?$', IGNORECASE) /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' pdbext = compile('\.(pdb|ent)\.gz$', IGNORECASE) /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' pdbext = compile('\.(pdb|ent)$', IGNORECASE) /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' """Parse DSSP data from file *dssp* into :class:`.AtomGroup` instance /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' """Build a covariance matrix for *coordsets* using mean coordinates testANMCommand (prody.tests.apps.test_prody_anm.TestANMCommand.testANMCommand) ... skipped 'prody command not found' testAlignConcat (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testAlignConcat) ... skipped 'prody command not found' testAlignException (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testAlignException) ... skipped 'prody command is not found' testIOException (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testIOException) ... skipped 'prody command is not found' testSelectConcat (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testSelectConcat) ... skipped 'prody command not found' testSelectException (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testSelectException) ... skipped 'prody command is not found' testSelectException2 (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testSelectException2) ... skipped 'prody command is not found' testSimpleConcat (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testSimpleConcat) ... skipped 'prody command not found' testCommandExample1 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample1) Test example: $ prody anm 1p38 ... skipped 'prody command not found' testCommandExample10 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample10) Test example: $ prody align 2k39 --select "backbone and resnum < 71" ... skipped 'prody command not found' testCommandExample11 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample11) Test example: $ prody align --select "resnum < 300" 1p38 1r39 1zz2 ... skipped 'prody command not found' testCommandExample12 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample12) Test example: $ prody align --select "resnum 1 to 70" 1aar 2k39 ... skipped 'prody command not found' testCommandExample13 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample13) Test example: $ prody align --select "noh heme and chain A" 1hrc 1fi7 ... skipped 'prody command not found' testCommandExample14 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample14) Test example: $ prody biomol 2bfu ... skipped 'prody command not found' testCommandExample15 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample15) Test example: $ prody select -o B11 "resname B11" 1zz2 $ prody select -o BOG "resname BOG" 1zz2 $ prody contacts -r 4.0 -t residue -s protein 1zz2 B11.pdb BOG.pdb ... skipped 'prody command not found' testCommandExample16 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample16) Test example: $ prody fetch 1mkp 1p38 ... skipped 'prody command not found' testCommandExample17 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample17) Test example: $ prody select backbone 1p38 1r39 ... skipped 'prody command not found' testCommandExample18 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample18) Test example: $ prody energy 1p38 1r39 ... skipped 'prody command not found' testCommandExample19 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample19) Test example: $ prody clustenm 1p38 ... skipped 'prody command not found' testCommandExample2 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample2) Test example: $ prody anm 1aar -s "calpha and chain A and resnum < 70" -A ... skipped 'prody command not found' testCommandExample20 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample20) Test example: $ prody clustenm 1aar -s "calpha and chain A and resnum < 70" -A ... skipped 'prody command not found' testCommandExample3 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample3) Test example: $ prody gnm 1p38 ... skipped 'prody command not found' testCommandExample4 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample4) Test example: $ prody gnm 1aar -c 7 -s "calpha and chain A and resnum < 70" -A ... skipped 'prody command not found' testCommandExample5 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample5) Test example: $ prody pca 2k39 ... skipped 'prody command not found' testCommandExample6 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample6) Test example: $ prody pca 2k39 --select "backbone and resnum < 71" -a -A ... skipped 'prody command not found' testCommandExample7 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample7) Test example: $ prody pca 2k39 ... skipped 'prody command not found' testCommandExample8 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample8) Test example: $ prody pca 2k39 --select "backbone and resnum < 71" -a -A ... skipped 'prody command not found' testCommandExample9 (prody.tests.apps.test_prody_examples.TestCommandExamples.testCommandExample9) Test example: $ prody align 2k39 ... skipped 'prody command not found' testGNMCommand (prody.tests.apps.test_prody_gnm.TestGNMCommand.testGNMCommand) ... skipped 'prody command not found' testPCACommandDCD (prody.tests.apps.test_prody_pca.TestPCACommand.testPCACommandDCD) ... skipped 'prody command not found' testPCACommandPDB (prody.tests.apps.test_prody_pca.TestPCACommand.testPCACommandPDB) ... skipped 'prody command not found' testAtomGroup (prody.tests.atomic.test_atomic.TestAtomIterations.testAtomGroup) ... ok testAtomMap (prody.tests.atomic.test_atomic.TestAtomIterations.testAtomMap) ... ok testChain (prody.tests.atomic.test_atomic.TestAtomIterations.testChain) ... ok testResidue (prody.tests.atomic.test_atomic.TestAtomIterations.testResidue) ... ok testSelection (prody.tests.atomic.test_atomic.TestAtomIterations.testSelection) ... ok testAtom (prody.tests.atomic.test_atomic.TestPickling.testAtom) ... ok testAtomGroup (prody.tests.atomic.test_atomic.TestPickling.testAtomGroup) ... ok testSelection (prody.tests.atomic.test_atomic.TestPickling.testSelection) ... ok testSaveLoad (prody.tests.atomic.test_atomic.TestSaveLoad.testSaveLoad) ... ok testInstantiation (prody.tests.atomic.test_atommap.TestInstantiation.testInstantiation) ... ok testAllSelection (prody.tests.atomic.test_atommap.TestSelection.testAllSelection) ... ok testChainSelection (prody.tests.atomic.test_atommap.TestSelection.testChainSelection) ... ok testGetBoolArray (prody.tests.atomic.test_atommap.TestSelection.testGetBoolArray) ... ok testNameSelection (prody.tests.atomic.test_atommap.TestSelection.testNameSelection) ... ok testSplit (prody.tests.atomic.test_fragment.TestFragment.testSplit) ... ok testSplitCopy (prody.tests.atomic.test_fragment.TestFragment.testSplitCopy) ... ok testSplitNoh (prody.tests.atomic.test_fragment.TestFragment.testSplitNoh) ... ok testSplitNohCopy (prody.tests.atomic.test_fragment.TestFragment.testSplitNohCopy) ... ok testWhole (prody.tests.atomic.test_fragment.TestFragment.testWhole) ... ok testWhole2 (prody.tests.atomic.test_fragment.TestFragment.testWhole2) ... ok testWholeAll (prody.tests.atomic.test_fragment.TestFragment.testWholeAll) ... ok testWholeCopy (prody.tests.atomic.test_fragment.TestFragment.testWholeCopy) ... ok testWholeNoh (prody.tests.atomic.test_fragment.TestFragment.testWholeNoh) ... ok testWholeNohCopy (prody.tests.atomic.test_fragment.TestFragment.testWholeNohCopy) ... ok testCA (prody.tests.atomic.test_hierview.TestShuffled.testCA) ... ok testProtein (prody.tests.atomic.test_hierview.TestShuffled.testProtein) ... ok testNumResidues (prody.tests.atomic.test_hierview.TestTerRecord.testNumResidues) ... ok testResidueIndexing (prody.tests.atomic.test_hierview.TestTerRecord.testResidueIndexing) ... ok testSelectionResidueIndexing (prody.tests.atomic.test_hierview.TestTerRecord.testSelectionResidueIndexing) ... ok testSelectionResidueIndexing2 (prody.tests.atomic.test_hierview.TestTerRecord.testSelectionResidueIndexing2) ... ok testMacro1 (prody.tests.atomic.test_select.TestMacros.testMacro1) Test macro *cacb*: 'name CA CB' ... ok testMacro2 (prody.tests.atomic.test_select.TestMacros.testMacro2) Test macro *donors*: '(protein) and (name N NE NH2 ND2 NE2 ND1 OG OH NH1 SG OG1 NE2 NZ NE1 ND1 NE2)' ... ok testMacroFunctions (prody.tests.atomic.test_select.TestMacros.testMacroFunctions) ... ok testBondedtoSelection1 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection1) Test bondedto selections 'bonded to index 0' for imatinib ... ok testBondedtoSelection10 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection10) Test bondedto selections "bonded 2 to index 0" ... ok testBondedtoSelection11 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection11) Test bondedto selections 'bonded 0 to index 0' for imatinib ... ok testBondedtoSelection12 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection12) Test bondedto selections "bonded 0 to index 0" ... ok testBondedtoSelection13 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection13) Test bondedto selections 'bonded 3 to index 0' for imatinib ... ok testBondedtoSelection14 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection14) Test bondedto selections "bonded 3 to index 0" ... ok testBondedtoSelection15 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection15) Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok testBondedtoSelection16 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection16) Test bondedto selections "bonded 4 to index 0" ... ok testBondedtoSelection17 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection17) Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok testBondedtoSelection18 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection18) Test bondedto selections "bonded 4 to index 0" ... ok testBondedtoSelection19 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection19) Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok testBondedtoSelection2 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection2) Test bondedto selections "bonded to index 0" ... ok testBondedtoSelection20 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection20) Test bondedto selections "bonded 4 to index 0" ... ok testBondedtoSelection21 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection21) Test bondedto selections 'exbonded 1 to index 0' for imatinib ... ok testBondedtoSelection22 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection22) Test bondedto selections "exbonded 1 to index 0" ... ok testBondedtoSelection23 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection23) Test bondedto selections 'exbonded 2 to index 0' for imatinib ... ok testBondedtoSelection24 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection24) Test bondedto selections "exbonded 2 to index 0" ... ok testBondedtoSelection25 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection25) Test bondedto selections 'exbonded 3 to index 0' for imatinib ... ok testBondedtoSelection26 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection26) Test bondedto selections "exbonded 3 to index 0" ... ok testBondedtoSelection27 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection27) Test bondedto selections 'bonded 20 to index 0' for imatinib ... ok testBondedtoSelection28 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection28) Test bondedto selections "bonded 20 to index 0" ... ok testBondedtoSelection29 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection29) Test bondedto selections 'bonded 20 to index 10' for imatinib ... ok testBondedtoSelection3 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection3) Test bondedto selections 'exbonded to index 0' for imatinib ... ok testBondedtoSelection30 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection30) Test bondedto selections "bonded 20 to index 10" ... ok testBondedtoSelection31 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection31) Test bondedto selections 'bonded to index 1000' for imatinib ... ok testBondedtoSelection32 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection32) Test bondedto selections "bonded to index 1000" ... ok testBondedtoSelection33 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection33) Test bondedto selections 'fragment 0' for imatinib ... ok testBondedtoSelection34 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection34) Test bondedto selections "fragment 0" ... ok testBondedtoSelection35 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection35) Test bondedto selections 'fragment 1' for imatinib ... ok testBondedtoSelection36 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection36) Test bondedto selections "fragment 1" ... ok testBondedtoSelection37 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection37) Test bondedto selections 'fragment 0 1 2' for imatinib ... ok testBondedtoSelection38 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection38) Test bondedto selections "fragment 0 1 2" ... ok testBondedtoSelection39 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection39) Test bondedto selections 'fragindex 0 1 2' for imatinib ... ok testBondedtoSelection4 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection4) Test bondedto selections "exbonded to index 0" ... ok testBondedtoSelection40 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection40) Test bondedto selections "fragindex 0 1 2" ... ok testBondedtoSelection41 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection41) Test bondedto selections 'fragindex 0:2' for imatinib ... ok testBondedtoSelection42 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection42) Test bondedto selections "fragindex 0:2" ... ok testBondedtoSelection5 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection5) Test bondedto selections 'bonded to index 67' for imatinib ... ok testBondedtoSelection6 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection6) Test bondedto selections "bonded to index 67" ... ok testBondedtoSelection7 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection7) Test bondedto selections 'exbonded to index 67' for imatinib ... ok testBondedtoSelection8 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection8) Test bondedto selections "exbonded to index 67" ... ok testBondedtoSelection9 (prody.tests.atomic.test_select.TestSelect.testBondedtoSelection9) Test bondedto selections 'bonded 2 to index 0' for imatinib ... ok testComparisonsSelection1 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection1) Test comparisons selections 'x = -51.659' for pdb3mht ... ok testComparisonsSelection10 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection10) Test comparisons selections "beta > 10" ... ok testComparisonsSelection11 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection11) Test comparisons selections 'beta < 10' for pdb3mht ... ok testComparisonsSelection12 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection12) Test comparisons selections "beta < 10" ... ok testComparisonsSelection13 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection13) Test comparisons selections 'occupancy > 0.999999' for pdb3mht ... ok testComparisonsSelection14 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection14) Test comparisons selections "occupancy > 0.999999" ... ok testComparisonsSelection15 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection15) Test comparisons selections '-10 <= x < 0' for pdb3mht ... ok testComparisonsSelection16 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection16) Test comparisons selections "-10 <= x < 0" ... ok testComparisonsSelection17 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection17) Test comparisons selections '11 > 10' for pdb3mht ... ok testComparisonsSelection18 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection18) Test comparisons selections "11 > 10" ... ok testComparisonsSelection19 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection19) Test comparisons selections 'radius > 10' for pdb3mht ... ok testComparisonsSelection2 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection2) Test comparisons selections "x = -51.659" ... ok testComparisonsSelection20 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection20) Test comparisons selections "radius > 10" ... ok testComparisonsSelection21 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection21) Test comparisons selections 'chain = A' for pdb3mht ... ok testComparisonsSelection22 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection22) Test comparisons selections "chain = A" ... ok testComparisonsSelection23 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection23) Test comparisons selections 'x x < 1' for pdb3mht ... ok testComparisonsSelection24 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection24) Test comparisons selections "x x < 1" ... ok testComparisonsSelection25 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection25) Test comparisons selections 'name < 1' for pdb3mht ... ok testComparisonsSelection26 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection26) Test comparisons selections "name < 1" ... ok testComparisonsSelection3 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection3) Test comparisons selections 'x != -51.659' for pdb3mht ... ok testComparisonsSelection4 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection4) Test comparisons selections "x != -51.659" ... ok testComparisonsSelection5 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection5) Test comparisons selections 'z >= 82.813' for pdb3mht ... ok testComparisonsSelection6 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection6) Test comparisons selections "z >= 82.813" ... ok testComparisonsSelection7 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection7) Test comparisons selections 'z < 82.813' for pdb3mht ... ok testComparisonsSelection8 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection8) Test comparisons selections "z < 82.813" ... ok testComparisonsSelection9 (prody.tests.atomic.test_select.TestSelect.testComparisonsSelection9) Test comparisons selections 'beta > 10' for pdb3mht ... ok testCompositeSelection1 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection1) Test composite selections 'chain x y z C and x 10' for pdb3mht ... ok testCompositeSelection10 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection10) Test composite selections "water and within 5 of not protein" ... ok testCompositeSelection11 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection11) Test composite selections 'backbone and sqrt((x - 25)**2 + (y - 74)**2 + (z - 13)**2) <= 500' for pdb3mht ... ok testCompositeSelection12 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection12) Test composite selections "backbone and sqrt((x - 25)**2 + (y - 74)**2 + (z - 13)**2) <= 500" ... ok testCompositeSelection13 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection13) Test composite selections '(not resname SAH) and (protein and name CA) or (nucleic and name P)' for pdb3mht ... ok testCompositeSelection14 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection14) Test composite selections "(not resname SAH) and (protein and name CA) or (nucleic and name P)" ... ok testCompositeSelection15 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection15) Test composite selections 'protein and (backbone or name H)' for pdb3mht ... ok testCompositeSelection16 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection16) Test composite selections "protein and (backbone or name H)" ... ok testCompositeSelection17 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection17) Test composite selections 'same residue as within 4 of and resname SAH' for pdb3mht ... ok testCompositeSelection18 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection18) Test composite selections "same residue as within 4 of and resname SAH" ... ok testCompositeSelection19 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection19) Test composite selections 'protein and name CA CB and same residue as ((x+21.2)**2 + (y-35.9)**2 + (z-80.0)**2)**0.5 < 10' for pdb3mht ... ok testCompositeSelection2 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection2) Test composite selections "chain x y z C and x 10" ... ok testCompositeSelection20 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection20) Test composite selections "protein and name CA CB and same residue as ((x+21.2)**2 + (y-35.9)**2 + (z-80.0)**2)**0.5 < 10" ... ok testCompositeSelection3 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection3) Test composite selections 'resnum `1` `2`' for pdb3mht ... ok testCompositeSelection4 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection4) Test composite selections "resnum `1` `2`" ... ok testCompositeSelection5 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection5) Test composite selections 'same residue as within 4 of resname SAH' for pdb3mht ... ok testCompositeSelection6 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection6) Test composite selections "same residue as within 4 of resname SAH" ... ok testCompositeSelection7 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection7) Test composite selections 'name CA and same residue as within 4 of resname SAH' for pdb3mht ... ok testCompositeSelection8 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection8) Test composite selections "name CA and same residue as within 4 of resname SAH" ... ok testCompositeSelection9 (prody.tests.atomic.test_select.TestSelect.testCompositeSelection9) Test composite selections 'water and within 5 of not protein' for pdb3mht ... ok testDocexamplesSelection1 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection1) Test docexamples selections 'serial 1 2 3' for pdb3mht ... ok testDocexamplesSelection10 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection10) Test docexamples selections "beta 555.55" ... ok testDocexamplesSelection11 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection11) Test docexamples selections 'beta 1 to 500' for pdb3mht ... ok testDocexamplesSelection12 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection12) Test docexamples selections "beta 1 to 500" ... ok testDocexamplesSelection13 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection13) Test docexamples selections 'beta 1:500' for pdb3mht ... ok testDocexamplesSelection14 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection14) Test docexamples selections "beta 1:500" ... ok testDocexamplesSelection15 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection15) Test docexamples selections 'beta < 500' for pdb3mht ... ok testDocexamplesSelection16 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection16) Test docexamples selections "beta < 500" ... ok testDocexamplesSelection17 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection17) Test docexamples selections 'resnum 120A 120B' for pdb3mht ... ok testDocexamplesSelection18 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection18) Test docexamples selections "resnum 120A 120B" ... ok testDocexamplesSelection19 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection19) Test docexamples selections 'icode A' for pdb3mht ... ok testDocexamplesSelection2 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection2) Test docexamples selections "serial 1 2 3" ... ok testDocexamplesSelection20 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection20) Test docexamples selections "icode A" ... ok testDocexamplesSelection21 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection21) Test docexamples selections 'icode _' for pdb3mht ... ok testDocexamplesSelection22 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection22) Test docexamples selections "icode _" ... ok testDocexamplesSelection23 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection23) Test docexamples selections 'charge 1' for pdb3mht ... ok testDocexamplesSelection24 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection24) Test docexamples selections "charge 1" ... ok testDocexamplesSelection25 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection25) Test docexamples selections 'abs(charge) == 1' for pdb3mht ... ok testDocexamplesSelection26 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection26) Test docexamples selections "abs(charge) == 1" ... ok testDocexamplesSelection27 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection27) Test docexamples selections 'charge < 0' for pdb3mht ... ok testDocexamplesSelection28 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection28) Test docexamples selections "charge < 0" ... ok testDocexamplesSelection29 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection29) Test docexamples selections '0 < mass < 500' for pdb3mht ... ok testDocexamplesSelection3 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection3) Test docexamples selections 'serial 1 to 10' for pdb3mht ... ok testDocexamplesSelection30 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection30) Test docexamples selections "0 < mass < 500" ... ok testDocexamplesSelection31 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection31) Test docexamples selections 'abs(mass) <= mass <= 10' for pdb3mht ... ok testDocexamplesSelection32 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection32) Test docexamples selections "abs(mass) <= mass <= 10" ... ok testDocexamplesSelection4 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection4) Test docexamples selections "serial 1 to 10" ... ok testDocexamplesSelection5 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection5) Test docexamples selections 'serial 1:10:2' for pdb3mht ... ok testDocexamplesSelection6 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection6) Test docexamples selections "serial 1:10:2" ... ok testDocexamplesSelection7 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection7) Test docexamples selections 'serial < 10' for pdb3mht ... ok testDocexamplesSelection8 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection8) Test docexamples selections "serial < 10" ... ok testDocexamplesSelection9 (prody.tests.atomic.test_select.TestSelect.testDocexamplesSelection9) Test docexamples selections 'beta 555.55' for pdb3mht ... ok testEquivalentSelection1 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection1) Test equivalent selections 'chain C' for pdb3mht ... ok testEquivalentSelection2 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection2) Test equivalent selections "chain C" ... ok testEquivalentSelection3 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection3) Test equivalent selections 'chain C' for pdb3mht ... ok testEquivalentSelection4 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection4) Test equivalent selections "chain C" ... ok testEquivalentSelection5 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection5) Test equivalent selections 'nucleic' for pdb3mht ... ok testEquivalentSelection6 (prody.tests.atomic.test_select.TestSelect.testEquivalentSelection6) Test equivalent selections "nucleic" ... ok testFlagsSelection1 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection1) Test flags selections 'protein' for gromacs ... ok testFlagsSelection10 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection10) Test flags selections "aliphatic" ... ok testFlagsSelection100 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection100) Test flags selections "bridge" ... ok testFlagsSelection101 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection101) Test flags selections 'bend' for pdb3mht ... ok testFlagsSelection102 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection102) Test flags selections "bend" ... ok testFlagsSelection103 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection103) Test flags selections 'coil' for pdb3mht ... ok testFlagsSelection104 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection104) Test flags selections "coil" ... ok testFlagsSelection11 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection11) Test flags selections 'aromatic' for pdb3mht ... ok testFlagsSelection12 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection12) Test flags selections "aromatic" ... ok testFlagsSelection13 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection13) Test flags selections 'at' for pdb3mht ... ok testFlagsSelection14 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection14) Test flags selections "at" ... ok testFlagsSelection15 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection15) Test flags selections 'basic' for pdb3mht ... ok testFlagsSelection16 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection16) Test flags selections "basic" ... ok testFlagsSelection17 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection17) Test flags selections 'buried' for pdb3mht ... ok testFlagsSelection18 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection18) Test flags selections "buried" ... ok testFlagsSelection19 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection19) Test flags selections 'cg' for pdb3mht ... ok testFlagsSelection2 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection2) Test flags selections "protein" ... ok testFlagsSelection20 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection20) Test flags selections "cg" ... ok testFlagsSelection21 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection21) Test flags selections 'charged' for pdb3mht ... ok testFlagsSelection22 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection22) Test flags selections "charged" ... ok testFlagsSelection23 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection23) Test flags selections 'cyclic' for pdb3mht ... ok testFlagsSelection24 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection24) Test flags selections "cyclic" ... ok testFlagsSelection25 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection25) Test flags selections 'heme' for pdb3mht ... ok testFlagsSelection26 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection26) Test flags selections "heme" ... ok testFlagsSelection27 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection27) Test flags selections 'hydrophobic' for pdb3mht ... ok testFlagsSelection28 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection28) Test flags selections "hydrophobic" ... ok testFlagsSelection29 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection29) Test flags selections 'ion' for pdb3mht ... ok testFlagsSelection3 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection3) Test flags selections 'all' for pdb3mht ... ok testFlagsSelection30 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection30) Test flags selections "ion" ... ok testFlagsSelection31 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection31) Test flags selections 'large' for pdb3mht ... ok testFlagsSelection32 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection32) Test flags selections "large" ... ok testFlagsSelection33 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection33) Test flags selections 'lipid' for pdb3mht ... ok testFlagsSelection34 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection34) Test flags selections "lipid" ... ok testFlagsSelection35 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection35) Test flags selections 'medium' for pdb3mht ... ok testFlagsSelection36 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection36) Test flags selections "medium" ... ok testFlagsSelection37 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection37) Test flags selections 'neutral' for pdb3mht ... ok testFlagsSelection38 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection38) Test flags selections "neutral" ... ok testFlagsSelection39 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection39) Test flags selections 'nucleic' for pdb3mht ... ok testFlagsSelection4 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection4) Test flags selections "all" ... ok testFlagsSelection40 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection40) Test flags selections "nucleic" ... ok testFlagsSelection41 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection41) Test flags selections 'nucleotide' for pdb3mht ... ok testFlagsSelection42 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection42) Test flags selections "nucleotide" ... ok testFlagsSelection43 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection43) Test flags selections 'nucleobase' for pdb3mht ... ok testFlagsSelection44 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection44) Test flags selections "nucleobase" ... ok testFlagsSelection45 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection45) Test flags selections 'nucleoside' for pdb3mht ... ok testFlagsSelection46 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection46) Test flags selections "nucleoside" ... ok testFlagsSelection47 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection47) Test flags selections 'polar' for pdb3mht ... ok testFlagsSelection48 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection48) Test flags selections "polar" ... ok testFlagsSelection49 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection49) Test flags selections 'protein' for pdb3mht ... ok testFlagsSelection5 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection5) Test flags selections 'acidic' for pdb3mht ... ok testFlagsSelection50 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection50) Test flags selections "protein" ... ok testFlagsSelection51 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection51) Test flags selections 'stdaa' for pdb3mht ... ok testFlagsSelection52 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection52) Test flags selections "stdaa" ... ok testFlagsSelection53 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection53) Test flags selections 'nonstdaa' for pdb3mht ... ok testFlagsSelection54 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection54) Test flags selections "nonstdaa" ... ok testFlagsSelection55 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection55) Test flags selections 'purine' for pdb3mht ... ok testFlagsSelection56 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection56) Test flags selections "purine" ... ok testFlagsSelection57 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection57) Test flags selections 'pyrimidine' for pdb3mht ... ok testFlagsSelection58 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection58) Test flags selections "pyrimidine" ... ok testFlagsSelection59 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection59) Test flags selections 'small' for pdb3mht ... ok testFlagsSelection6 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection6) Test flags selections "acidic" ... ok testFlagsSelection60 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection60) Test flags selections "small" ... ok testFlagsSelection61 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection61) Test flags selections 'sugar' for pdb3mht ... ok testFlagsSelection62 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection62) Test flags selections "sugar" ... ok testFlagsSelection63 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection63) Test flags selections 'surface' for pdb3mht ... ok testFlagsSelection64 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection64) Test flags selections "surface" ... ok testFlagsSelection65 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection65) Test flags selections 'water' for pdb3mht ... ok testFlagsSelection66 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection66) Test flags selections "water" ... ok testFlagsSelection67 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection67) Test flags selections 'hetero' for pdb3mht ... ok testFlagsSelection68 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection68) Test flags selections "hetero" ... ok testFlagsSelection69 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection69) Test flags selections 'hetatm' for pdb3mht ... ok testFlagsSelection7 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection7) Test flags selections 'acyclic' for pdb3mht ... ok testFlagsSelection70 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection70) Test flags selections "hetatm" ... ok testFlagsSelection71 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection71) Test flags selections 'calpha' for pdb3mht ... ok testFlagsSelection72 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection72) Test flags selections "calpha" ... ok testFlagsSelection73 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection73) Test flags selections 'backbone' for pdb3mht ... ok testFlagsSelection74 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection74) Test flags selections "backbone" ... ok testFlagsSelection75 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection75) Test flags selections 'backbonefull' for pdb3mht ... ok testFlagsSelection76 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection76) Test flags selections "backbonefull" ... ok testFlagsSelection77 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection77) Test flags selections 'sidechain' for pdb3mht ... ok testFlagsSelection78 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection78) Test flags selections "sidechain" ... ok testFlagsSelection79 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection79) Test flags selections 'carbon' for pdb3mht ... ok testFlagsSelection8 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection8) Test flags selections "acyclic" ... ok testFlagsSelection80 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection80) Test flags selections "carbon" ... ok testFlagsSelection81 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection81) Test flags selections 'hydrogen' for pdb3mht ... ok testFlagsSelection82 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection82) Test flags selections "hydrogen" ... ok testFlagsSelection83 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection83) Test flags selections 'noh' for pdb3mht ... ok testFlagsSelection84 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection84) Test flags selections "noh" ... ok testFlagsSelection85 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection85) Test flags selections 'nitrogen' for pdb3mht ... ok testFlagsSelection86 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection86) Test flags selections "nitrogen" ... ok testFlagsSelection87 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection87) Test flags selections 'oxygen' for pdb3mht ... ok testFlagsSelection88 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection88) Test flags selections "oxygen" ... ok testFlagsSelection89 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection89) Test flags selections 'sulfur' for pdb3mht ... ok testFlagsSelection9 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection9) Test flags selections 'aliphatic' for pdb3mht ... ok testFlagsSelection90 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection90) Test flags selections "sulfur" ... ok testFlagsSelection91 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection91) Test flags selections 'extended' for pdb3mht ... ok testFlagsSelection92 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection92) Test flags selections "extended" ... ok testFlagsSelection93 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection93) Test flags selections 'helix' for pdb3mht ... ok testFlagsSelection94 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection94) Test flags selections "helix" ... ok testFlagsSelection95 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection95) Test flags selections 'helix310' for pdb3mht ... ok testFlagsSelection96 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection96) Test flags selections "helix310" ... ok testFlagsSelection97 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection97) Test flags selections 'turn' for pdb3mht ... ok testFlagsSelection98 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection98) Test flags selections "turn" ... ok testFlagsSelection99 (prody.tests.atomic.test_select.TestSelect.testFlagsSelection99) Test flags selections 'bridge' for pdb3mht ... ok testFloatSelection1 (prody.tests.atomic.test_select.TestSelect.testFloatSelection1) Test float selections 'beta 5.0 41.15 11.85' for pdb3mht ... ok testFloatSelection10 (prody.tests.atomic.test_select.TestSelect.testFloatSelection10) Test float selections "z 115.246 45.784" ... ok testFloatSelection11 (prody.tests.atomic.test_select.TestSelect.testFloatSelection11) Test float selections 'charge 0' for pdb3mht ... ok testFloatSelection12 (prody.tests.atomic.test_select.TestSelect.testFloatSelection12) Test float selections "charge 0" ... ok testFloatSelection13 (prody.tests.atomic.test_select.TestSelect.testFloatSelection13) Test float selections 'mass 1' for pdb3mht ... ok testFloatSelection14 (prody.tests.atomic.test_select.TestSelect.testFloatSelection14) Test float selections "mass 1" ... ok testFloatSelection15 (prody.tests.atomic.test_select.TestSelect.testFloatSelection15) Test float selections 'radius 0' for pdb3mht ... ok testFloatSelection16 (prody.tests.atomic.test_select.TestSelect.testFloatSelection16) Test float selections "radius 0" ... ok testFloatSelection17 (prody.tests.atomic.test_select.TestSelect.testFloatSelection17) Test float selections 'beta "1."' for pdb3mht ... ok testFloatSelection18 (prody.tests.atomic.test_select.TestSelect.testFloatSelection18) Test float selections "beta "1."" ... ok testFloatSelection19 (prody.tests.atomic.test_select.TestSelect.testFloatSelection19) Test float selections 'beta = "1."' for pdb3mht ... ok testFloatSelection2 (prody.tests.atomic.test_select.TestSelect.testFloatSelection2) Test float selections "beta 5.0 41.15 11.85" ... ok testFloatSelection20 (prody.tests.atomic.test_select.TestSelect.testFloatSelection20) Test float selections "beta = "1."" ... ok testFloatSelection3 (prody.tests.atomic.test_select.TestSelect.testFloatSelection3) Test float selections 'occupancy 1.0' for pdb3mht ... ok testFloatSelection4 (prody.tests.atomic.test_select.TestSelect.testFloatSelection4) Test float selections "occupancy 1.0" ... ok testFloatSelection5 (prody.tests.atomic.test_select.TestSelect.testFloatSelection5) Test float selections 'x 6.665' for pdb3mht ... ok testFloatSelection6 (prody.tests.atomic.test_select.TestSelect.testFloatSelection6) Test float selections "x 6.665" ... ok testFloatSelection7 (prody.tests.atomic.test_select.TestSelect.testFloatSelection7) Test float selections 'y 69.99 13.314' for pdb3mht ... ok testFloatSelection8 (prody.tests.atomic.test_select.TestSelect.testFloatSelection8) Test float selections "y 69.99 13.314" ... ok testFloatSelection9 (prody.tests.atomic.test_select.TestSelect.testFloatSelection9) Test float selections 'z 115.246 45.784' for pdb3mht ... ok testFunctionSelection1 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection1) Test function selections 'sqrt(x**2 + y**2 + z**2) < 100' for pdb3mht ... ok testFunctionSelection10 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection10) Test function selections "ceil(beta) == 10" ... ok testFunctionSelection11 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection11) Test function selections 'floor(beta) == 10' for pdb3mht ... ok testFunctionSelection12 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection12) Test function selections "floor(beta) == 10" ... ok testFunctionSelection13 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection13) Test function selections 'sq(x-5)+sq(y+4)+sq(z) > sq(100)' for pdb3mht ... ok testFunctionSelection14 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection14) Test function selections "sq(x-5)+sq(y+4)+sq(z) > sq(100)" ... ok testFunctionSelection15 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection15) Test function selections '1 > sq(occ)' for pdb3mht ... ok testFunctionSelection16 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection16) Test function selections "1 > sq(occ)" ... ok testFunctionSelection17 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection17) Test function selections 'sq(x x) > 1' for pdb3mht ... ok testFunctionSelection18 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection18) Test function selections "sq(x x) > 1" ... ok testFunctionSelection2 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection2) Test function selections "sqrt(x**2 + y**2 + z**2) < 100" ... ok testFunctionSelection3 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection3) Test function selections 'sqrt(x**2 + y**2 + z**2) == (x**2 + y**2 + z**2) ** 0.5' for pdb3mht ... ok testFunctionSelection4 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection4) Test function selections "sqrt(x**2 + y**2 + z**2) == (x**2 + y**2 + z**2) ** 0.5" ... ok testFunctionSelection5 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection5) Test function selections 'beta % 3 < 1' for pdb3mht ... ok testFunctionSelection6 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection6) Test function selections "beta % 3 < 1" ... ok testFunctionSelection7 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection7) Test function selections 'beta % 4 % 3 < 1' for pdb3mht ... ok testFunctionSelection8 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection8) Test function selections "beta % 4 % 3 < 1" ... ok testFunctionSelection9 (prody.tests.atomic.test_select.TestSelect.testFunctionSelection9) Test function selections 'ceil(beta) == 10' for pdb3mht ... ok testIntegerSelection1 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection1) Test integer selections 'index 10 20 10000' for pdb3mht ... ok testIntegerSelection10 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection10) Test integer selections "resnum 100 105" ... ok testIntegerSelection11 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection11) Test integer selections 'resid 0' for pdb3mht ... ok testIntegerSelection12 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection12) Test integer selections "resid 0" ... ok testIntegerSelection13 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection13) Test integer selections 'resid 100 105' for pdb3mht ... ok testIntegerSelection14 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection14) Test integer selections "resid 100 105" ... ok testIntegerSelection15 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection15) Test integer selections 'resid 100 A 105' for pdb3mht ... ok testIntegerSelection16 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection16) Test integer selections "resid 100 A 105" ... ok testIntegerSelection17 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection17) Test integer selections 'fragindex 0' for pdb3mht ... ok testIntegerSelection18 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection18) Test integer selections "fragindex 0" ... ok testIntegerSelection19 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection19) Test integer selections 'fragment 0' for pdb3mht ... ok testIntegerSelection2 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection2) Test integer selections "index 10 20 10000" ... ok testIntegerSelection20 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection20) Test integer selections "fragment 0" ... ok testIntegerSelection3 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection3) Test integer selections 'serial 0' for pdb3mht ... ok testIntegerSelection4 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection4) Test integer selections "serial 0" ... ok testIntegerSelection5 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection5) Test integer selections 'serial 1 2' for pdb3mht ... ok testIntegerSelection6 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection6) Test integer selections "serial 1 2" ... ok testIntegerSelection7 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection7) Test integer selections 'resnum 0' for pdb3mht ... ok testIntegerSelection8 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection8) Test integer selections "resnum 0" ... ok testIntegerSelection9 (prody.tests.atomic.test_select.TestSelect.testIntegerSelection9) Test integer selections 'resnum 100 105' for pdb3mht ... ok testInvalidSelection1 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection1) Test invalid selections 'chain C and and chain C' for pdb3mht ... ok testInvalidSelection10 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection10) Test invalid selections "sqr(x-5)+sqr(y+4)+sqr(z) > sqr(100)" ... ok testInvalidSelection11 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection11) Test invalid selections 'x > sq(calpha)' for pdb3mht ... ok testInvalidSelection12 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection12) Test invalid selections "x > sq(calpha)" ... ok testInvalidSelection13 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection13) Test invalid selections 'x > sq(name CA and resname ALA)' for pdb3mht ... ok testInvalidSelection14 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection14) Test invalid selections "x > sq(name CA and resname ALA)" ... ok testInvalidSelection15 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection15) Test invalid selections 'resname ALA and +1' for pdb3mht ... ok testInvalidSelection16 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection16) Test invalid selections "resname ALA and +1" ... ok testInvalidSelection2 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection2) Test invalid selections "chain C and and chain C" ... ok testInvalidSelection3 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection3) Test invalid selections 'chain C or or chain D' for pdb3mht ... ok testInvalidSelection4 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection4) Test invalid selections "chain C or or chain D" ... ok testInvalidSelection5 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection5) Test invalid selections 'chain C or not or chain D' for pdb3mht ... ok testInvalidSelection6 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection6) Test invalid selections "chain C or not or chain D" ... ok testInvalidSelection7 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection7) Test invalid selections 'chain C + 3' for pdb3mht ... ok testInvalidSelection8 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection8) Test invalid selections "chain C + 3" ... ok testInvalidSelection9 (prody.tests.atomic.test_select.TestSelect.testInvalidSelection9) Test invalid selections 'sqr(x-5)+sqr(y+4)+sqr(z) > sqr(100)' for pdb3mht ... ok testKwargsSelection1 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection1) Test kwargs selections 'within 100 of origin' for pdb3mht ... ok testKwargsSelection10 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection10) Test kwargs selections "within 100 of none" ... ok testKwargsSelection2 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection2) Test kwargs selections "within 100 of origin" ... ok testKwargsSelection3 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection3) Test kwargs selections 'within 100 of origin' for pdb3mht ... ok testKwargsSelection4 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection4) Test kwargs selections "within 100 of origin" ... ok testKwargsSelection5 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection5) Test kwargs selections 'within 100 of origin' for pdb3mht ... ok testKwargsSelection6 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection6) Test kwargs selections "within 100 of origin" ... ok testKwargsSelection7 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection7) Test kwargs selections 'within 100 of origin' for pdb3mht ... ok testKwargsSelection8 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection8) Test kwargs selections "within 100 of origin" ... ok testKwargsSelection9 (prody.tests.atomic.test_select.TestSelect.testKwargsSelection9) Test kwargs selections 'within 100 of none' for pdb3mht ... ok testLogicalSelection1 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection1) Test logical selections 'name or name' for pdb3mht ... ok testLogicalSelection10 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection10) Test logical selections "index 0 or index 1 " ... ok testLogicalSelection11 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection11) Test logical selections 'not not not not index 1' for pdb3mht ... ok testLogicalSelection12 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection12) Test logical selections "not not not not index 1" ... ok testLogicalSelection13 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection13) Test logical selections 'index 0 or index 1 or index 2' for pdb3mht ... ok testLogicalSelection14 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection14) Test logical selections "index 0 or index 1 or index 2" ... ok testLogicalSelection15 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection15) Test logical selections 'index 0 or index 1 or index 2 or index 4' for pdb3mht ... ok testLogicalSelection16 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection16) Test logical selections "index 0 or index 1 or index 2 or index 4" ... ok testLogicalSelection17 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection17) Test logical selections 'index 0 and index 1 ' for pdb3mht ... ok testLogicalSelection18 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection18) Test logical selections "index 0 and index 1 " ... ok testLogicalSelection19 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection19) Test logical selections 'index < 50 and index < 5' for pdb3mht ... ok testLogicalSelection2 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection2) Test logical selections "name or name" ... ok testLogicalSelection20 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection20) Test logical selections "index < 50 and index < 5" ... ok testLogicalSelection21 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection21) Test logical selections 'index < 50 and index < 25 and index < 5' for pdb3mht ... ok testLogicalSelection22 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection22) Test logical selections "index < 50 and index < 25 and index < 5" ... ok testLogicalSelection23 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection23) Test logical selections 'index < 5 and index < 25 and index < 50' for pdb3mht ... ok testLogicalSelection24 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection24) Test logical selections "index < 5 and index < 25 and index < 50" ... ok testLogicalSelection25 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection25) Test logical selections 'index 0 to 5 and index 0 to 25 and index 0 to 50' for pdb3mht ... ok testLogicalSelection26 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection26) Test logical selections "index 0 to 5 and index 0 to 25 and index 0 to 50" ... ok testLogicalSelection27 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection27) Test logical selections 'index < 5 and index < 25 and index < 50 or index < 50 or index < 5' for pdb3mht ... ok testLogicalSelection28 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection28) Test logical selections "index < 5 and index < 25 and index < 50 or index < 50 or index < 5" ... ok testLogicalSelection3 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection3) Test logical selections 'name and name' for pdb3mht ... ok testLogicalSelection4 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection4) Test logical selections "name and name" ... ok testLogicalSelection5 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection5) Test logical selections 'name CA and name CA' for pdb3mht ... ok testLogicalSelection6 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection6) Test logical selections "name CA and name CA" ... ok testLogicalSelection7 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection7) Test logical selections 'name CA or name CA' for pdb3mht ... ok testLogicalSelection8 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection8) Test logical selections "name CA or name CA" ... ok testLogicalSelection9 (prody.tests.atomic.test_select.TestSelect.testLogicalSelection9) Test logical selections 'index 0 or index 1 ' for pdb3mht ... ok testOperationSelection1 (prody.tests.atomic.test_select.TestSelect.testOperationSelection1) Test operation selections 'x ** 2 < 10' for pdb3mht ... ok testOperationSelection10 (prody.tests.atomic.test_select.TestSelect.testOperationSelection10) Test operation selections "x**2 + y**2 + z**2 < 10000" ... ok testOperationSelection2 (prody.tests.atomic.test_select.TestSelect.testOperationSelection2) Test operation selections "x ** 2 < 10" ... ok testOperationSelection3 (prody.tests.atomic.test_select.TestSelect.testOperationSelection3) Test operation selections 'x ** 2 ** 2 ** 2 < 10' for pdb3mht ... ok testOperationSelection4 (prody.tests.atomic.test_select.TestSelect.testOperationSelection4) Test operation selections "x ** 2 ** 2 ** 2 < 10" ... ok testOperationSelection5 (prody.tests.atomic.test_select.TestSelect.testOperationSelection5) Test operation selections 'x ** (+2 ** (+2 ** +2)) < 10' for pdb3mht ... ok testOperationSelection6 (prody.tests.atomic.test_select.TestSelect.testOperationSelection6) Test operation selections "x ** (+2 ** (+2 ** +2)) < 10" ... ok testOperationSelection7 (prody.tests.atomic.test_select.TestSelect.testOperationSelection7) Test operation selections 'occupancy % 2 == 1' for pdb3mht ... ok testOperationSelection8 (prody.tests.atomic.test_select.TestSelect.testOperationSelection8) Test operation selections "occupancy % 2 == 1" ... ok testOperationSelection9 (prody.tests.atomic.test_select.TestSelect.testOperationSelection9) Test operation selections 'x**2 + y**2 + z**2 < 10000' for pdb3mht ... ok testRangeSelection1 (prody.tests.atomic.test_select.TestSelect.testRangeSelection1) Test range selections 'index 0:10' for pdb3mht ... ok testRangeSelection10 (prody.tests.atomic.test_select.TestSelect.testRangeSelection10) Test range selections "resnum 10to15" ... ok testRangeSelection11 (prody.tests.atomic.test_select.TestSelect.testRangeSelection11) Test range selections 'resnum 10:16:1' for pdb3mht ... ok testRangeSelection12 (prody.tests.atomic.test_select.TestSelect.testRangeSelection12) Test range selections "resnum 10:16:1" ... ok testRangeSelection13 (prody.tests.atomic.test_select.TestSelect.testRangeSelection13) Test range selections 'resnum `-3:16:1`' for pdb3mht ... ok testRangeSelection14 (prody.tests.atomic.test_select.TestSelect.testRangeSelection14) Test range selections "resnum `-3:16:1`" ... ok testRangeSelection15 (prody.tests.atomic.test_select.TestSelect.testRangeSelection15) Test range selections 'resid 10to15' for pdb3mht ... ok testRangeSelection16 (prody.tests.atomic.test_select.TestSelect.testRangeSelection16) Test range selections "resid 10to15" ... ok testRangeSelection17 (prody.tests.atomic.test_select.TestSelect.testRangeSelection17) Test range selections 'resid 10:16:1' for pdb3mht ... ok testRangeSelection18 (prody.tests.atomic.test_select.TestSelect.testRangeSelection18) Test range selections "resid 10:16:1" ... ok testRangeSelection19 (prody.tests.atomic.test_select.TestSelect.testRangeSelection19) Test range selections 'x `-10:20`' for pdb3mht ... ok testRangeSelection2 (prody.tests.atomic.test_select.TestSelect.testRangeSelection2) Test range selections "index 0:10" ... ok testRangeSelection20 (prody.tests.atomic.test_select.TestSelect.testRangeSelection20) Test range selections "x `-10:20`" ... ok testRangeSelection21 (prody.tests.atomic.test_select.TestSelect.testRangeSelection21) Test range selections 'x 0:20:1' for pdb3mht ... ok testRangeSelection22 (prody.tests.atomic.test_select.TestSelect.testRangeSelection22) Test range selections "x 0:20:1" ... ok testRangeSelection23 (prody.tests.atomic.test_select.TestSelect.testRangeSelection23) Test range selections 'beta 13.02:13.01' for pdb3mht ... ok testRangeSelection24 (prody.tests.atomic.test_select.TestSelect.testRangeSelection24) Test range selections "beta 13.02:13.01" ... ok testRangeSelection3 (prody.tests.atomic.test_select.TestSelect.testRangeSelection3) Test range selections 'index 0to10' for pdb3mht ... ok testRangeSelection4 (prody.tests.atomic.test_select.TestSelect.testRangeSelection4) Test range selections "index 0to10" ... ok testRangeSelection5 (prody.tests.atomic.test_select.TestSelect.testRangeSelection5) Test range selections 'serial 0:10:2' for pdb3mht ... ok testRangeSelection6 (prody.tests.atomic.test_select.TestSelect.testRangeSelection6) Test range selections "serial 0:10:2" ... ok testRangeSelection7 (prody.tests.atomic.test_select.TestSelect.testRangeSelection7) Test range selections 'serial 0:10:10' for pdb3mht ... ok testRangeSelection8 (prody.tests.atomic.test_select.TestSelect.testRangeSelection8) Test range selections "serial 0:10:10" ... ok testRangeSelection9 (prody.tests.atomic.test_select.TestSelect.testRangeSelection9) Test range selections 'resnum 10to15' for pdb3mht ... ok testRegexpSelection1 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection1) Test regexp selections 'resname "S.."' for pdb3mht ... ok testRegexpSelection10 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection10) Test regexp selections "name "C((A|B)"" ... ok testRegexpSelection2 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection2) Test regexp selections "resname "S.."" ... ok testRegexpSelection3 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection3) Test regexp selections 'name "C.*"' for pdb3mht ... ok testRegexpSelection4 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection4) Test regexp selections "name "C.*"" ... ok testRegexpSelection5 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection5) Test regexp selections 'name ".*\'"' for pdb3mht ... ok testRegexpSelection6 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection6) Test regexp selections "name ".*'"" ... ok testRegexpSelection7 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection7) Test regexp selections 'name "C(A|B)"' for pdb3mht ... ok testRegexpSelection8 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection8) Test regexp selections "name "C(A|B)"" ... ok testRegexpSelection9 (prody.tests.atomic.test_select.TestSelect.testRegexpSelection9) Test regexp selections 'name "C((A|B)"' for pdb3mht ... ok testSameasSelection1 (prody.tests.atomic.test_select.TestSelect.testSameasSelection1) Test sameas selections 'same residue as index 0' for pdb3mht ... ok testSameasSelection10 (prody.tests.atomic.test_select.TestSelect.testSameasSelection10) Test sameas selections "same chain as chain C" ... ok testSameasSelection11 (prody.tests.atomic.test_select.TestSelect.testSameasSelection11) Test sameas selections 'same residue as chain X' for pdb3mht ... ok testSameasSelection12 (prody.tests.atomic.test_select.TestSelect.testSameasSelection12) Test sameas selections "same residue as chain X" ... ok testSameasSelection13 (prody.tests.atomic.test_select.TestSelect.testSameasSelection13) Test sameas selections 'same none as chain C' for pdb3mht ... ok testSameasSelection14 (prody.tests.atomic.test_select.TestSelect.testSameasSelection14) Test sameas selections "same none as chain C" ... ok testSameasSelection15 (prody.tests.atomic.test_select.TestSelect.testSameasSelection15) Test sameas selections 'same residue as same residue as same residue as index 0' for pdb3mht ... ok testSameasSelection16 (prody.tests.atomic.test_select.TestSelect.testSameasSelection16) Test sameas selections "same residue as same residue as same residue as index 0" ... ok testSameasSelection2 (prody.tests.atomic.test_select.TestSelect.testSameasSelection2) Test sameas selections "same residue as index 0" ... ok testSameasSelection3 (prody.tests.atomic.test_select.TestSelect.testSameasSelection3) Test sameas selections 'same chain as index 0' for pdb3mht ... ok testSameasSelection4 (prody.tests.atomic.test_select.TestSelect.testSameasSelection4) Test sameas selections "same chain as index 0" ... ok testSameasSelection5 (prody.tests.atomic.test_select.TestSelect.testSameasSelection5) Test sameas selections 'same segment as index 0' for pdb3mht ... ok testSameasSelection6 (prody.tests.atomic.test_select.TestSelect.testSameasSelection6) Test sameas selections "same segment as index 0" ... ok testSameasSelection7 (prody.tests.atomic.test_select.TestSelect.testSameasSelection7) Test sameas selections 'same residue as resname DG ALA' for pdb3mht ... ok testSameasSelection8 (prody.tests.atomic.test_select.TestSelect.testSameasSelection8) Test sameas selections "same residue as resname DG ALA" ... ok testSameasSelection9 (prody.tests.atomic.test_select.TestSelect.testSameasSelection9) Test sameas selections 'same chain as chain C' for pdb3mht ... ok testSequenceSelection1 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection1) Test sequence selections 'sequence al' for pdb3mht ... ok testSequenceSelection10 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection10) Test sequence selections "sequence FKPY" ... ok testSequenceSelection11 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection11) Test sequence selections 'sequence "SS."' for pdb3mht ... ok testSequenceSelection12 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection12) Test sequence selections "sequence "SS."" ... ok testSequenceSelection13 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection13) Test sequence selections 'sequence "S[A-Z]{2}G"' for pdb3mht ... ok testSequenceSelection14 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection14) Test sequence selections "sequence "S[A-Z]{2}G"" ... ok testSequenceSelection15 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection15) Test sequence selections 'sequence "S.S.S"' for pdb3mht ... ok testSequenceSelection16 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection16) Test sequence selections "sequence "S.S.S"" ... ok testSequenceSelection17 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection17) Test sequence selections 'sequence "."' for pdb3mht ... ok testSequenceSelection18 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection18) Test sequence selections "sequence "."" ... ok testSequenceSelection2 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection2) Test sequence selections "sequence al" ... ok testSequenceSelection3 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection3) Test sequence selections 'sequence A' for pdb3mht ... ok testSequenceSelection4 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection4) Test sequence selections "sequence A" ... ok testSequenceSelection5 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection5) Test sequence selections 'sequence MIEIK' for pdb3mht ... ok testSequenceSelection6 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection6) Test sequence selections "sequence MIEIK" ... ok testSequenceSelection7 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection7) Test sequence selections 'sequence VLNAL' for pdb3mht ... ok testSequenceSelection8 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection8) Test sequence selections "sequence VLNAL" ... ok testSequenceSelection9 (prody.tests.atomic.test_select.TestSelect.testSequenceSelection9) Test sequence selections 'sequence FKPY' for pdb3mht ... ok testSpecialcharSelection1 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection1) Test specialchar selections 'altloc ` `' for pdb3mht ... ok testSpecialcharSelection2 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection2) Test specialchar selections "altloc ` `" ... ok testSpecialcharSelection3 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection3) Test specialchar selections 'name A` `CA`' for pdb3mht ... ok testSpecialcharSelection4 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection4) Test specialchar selections "name A` `CA`" ... ok testSpecialcharSelection5 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection5) Test specialchar selections 'name `A``' for pdb3mht ... ok testSpecialcharSelection6 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection6) Test specialchar selections "name `A``" ... ok testSpecialcharSelection7 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection7) Test specialchar selections 'z `+100.291`' for pdb3mht ... ok testSpecialcharSelection8 (prody.tests.atomic.test_select.TestSelect.testSpecialcharSelection8) Test specialchar selections "z `+100.291`" ... ok testStringSelection1 (prody.tests.atomic.test_select.TestSelect.testStringSelection1) Test string selections 'name P' for pdb3mht ... ok testStringSelection10 (prody.tests.atomic.test_select.TestSelect.testStringSelection10) Test string selections "chain x" ... ok testStringSelection11 (prody.tests.atomic.test_select.TestSelect.testStringSelection11) Test string selections 'chain x y' for pdb3mht ... ok testStringSelection12 (prody.tests.atomic.test_select.TestSelect.testStringSelection12) Test string selections "chain x y" ... ok testStringSelection13 (prody.tests.atomic.test_select.TestSelect.testStringSelection13) Test string selections 'chain x y z' for pdb3mht ... ok testStringSelection14 (prody.tests.atomic.test_select.TestSelect.testStringSelection14) Test string selections "chain x y z" ... ok testStringSelection15 (prody.tests.atomic.test_select.TestSelect.testStringSelection15) Test string selections 'chain x y z C' for pdb3mht ... ok testStringSelection16 (prody.tests.atomic.test_select.TestSelect.testStringSelection16) Test string selections "chain x y z C" ... ok testStringSelection17 (prody.tests.atomic.test_select.TestSelect.testStringSelection17) Test string selections 'chain C D' for pdb3mht ... ok testStringSelection18 (prody.tests.atomic.test_select.TestSelect.testStringSelection18) Test string selections "chain C D" ... ok testStringSelection19 (prody.tests.atomic.test_select.TestSelect.testStringSelection19) Test string selections 'chain CD' for pdb3mht ... ok testStringSelection2 (prody.tests.atomic.test_select.TestSelect.testStringSelection2) Test string selections "name P" ... ok testStringSelection20 (prody.tests.atomic.test_select.TestSelect.testStringSelection20) Test string selections "chain CD" ... ok testStringSelection21 (prody.tests.atomic.test_select.TestSelect.testStringSelection21) Test string selections 'resname DG' for pdb3mht ... ok testStringSelection22 (prody.tests.atomic.test_select.TestSelect.testStringSelection22) Test string selections "resname DG" ... ok testStringSelection23 (prody.tests.atomic.test_select.TestSelect.testStringSelection23) Test string selections 'resname DG ALA' for pdb3mht ... ok testStringSelection24 (prody.tests.atomic.test_select.TestSelect.testStringSelection24) Test string selections "resname DG ALA" ... ok testStringSelection25 (prody.tests.atomic.test_select.TestSelect.testStringSelection25) Test string selections 'altloc A' for pdb3mht ... ok testStringSelection26 (prody.tests.atomic.test_select.TestSelect.testStringSelection26) Test string selections "altloc A" ... ok testStringSelection27 (prody.tests.atomic.test_select.TestSelect.testStringSelection27) Test string selections 'altloc _' for pdb3mht ... ok testStringSelection28 (prody.tests.atomic.test_select.TestSelect.testStringSelection28) Test string selections "altloc _" ... ok testStringSelection29 (prody.tests.atomic.test_select.TestSelect.testStringSelection29) Test string selections 'secondary H' for pdb3mht ... ok testStringSelection3 (prody.tests.atomic.test_select.TestSelect.testStringSelection3) Test string selections 'name P CA' for pdb3mht ... ok testStringSelection30 (prody.tests.atomic.test_select.TestSelect.testStringSelection30) Test string selections "secondary H" ... ok testStringSelection31 (prody.tests.atomic.test_select.TestSelect.testStringSelection31) Test string selections 'secondary H E' for pdb3mht ... ok testStringSelection32 (prody.tests.atomic.test_select.TestSelect.testStringSelection32) Test string selections "secondary H E" ... ok testStringSelection33 (prody.tests.atomic.test_select.TestSelect.testStringSelection33) Test string selections 'secondary _' for pdb3mht ... ok testStringSelection34 (prody.tests.atomic.test_select.TestSelect.testStringSelection34) Test string selections "secondary _" ... ok testStringSelection35 (prody.tests.atomic.test_select.TestSelect.testStringSelection35) Test string selections 'segment _' for pdb3mht ... ok testStringSelection36 (prody.tests.atomic.test_select.TestSelect.testStringSelection36) Test string selections "segment _" ... ok testStringSelection4 (prody.tests.atomic.test_select.TestSelect.testStringSelection4) Test string selections "name P CA" ... ok testStringSelection5 (prody.tests.atomic.test_select.TestSelect.testStringSelection5) Test string selections 'name `A 1`' for pdb3mht ... ok testStringSelection6 (prody.tests.atomic.test_select.TestSelect.testStringSelection6) Test string selections "name `A 1`" ... ok testStringSelection7 (prody.tests.atomic.test_select.TestSelect.testStringSelection7) Test string selections 'chain C' for pdb3mht ... ok testStringSelection8 (prody.tests.atomic.test_select.TestSelect.testStringSelection8) Test string selections "chain C" ... ok testStringSelection9 (prody.tests.atomic.test_select.TestSelect.testStringSelection9) Test string selections 'chain x' for pdb3mht ... ok testSynonymsSelection1 (prody.tests.atomic.test_select.TestSelect.testSynonymsSelection1) Test synonyms selections 'chain C' for pdb3mht ... ok testSynonymsSelection2 (prody.tests.atomic.test_select.TestSelect.testSynonymsSelection2) Test synonyms selections "chain C" ... ok testSynonymsSelection3 (prody.tests.atomic.test_select.TestSelect.testSynonymsSelection3) Test synonyms selections 'chain C D' for pdb3mht ... ok testSynonymsSelection4 (prody.tests.atomic.test_select.TestSelect.testSynonymsSelection4) Test synonyms selections "chain C D" ... ok testUnintendedSelection1 (prody.tests.atomic.test_select.TestSelect.testUnintendedSelection1) Test unintended selections 'abs beta = beta' for pdb3mht ... ok testUnintendedSelection2 (prody.tests.atomic.test_select.TestSelect.testUnintendedSelection2) Test unintended selections "abs beta = beta" ... ok testUserdataSelection1 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection1) Test userdata selections 'temp < 10' for pdb3mht ... ok testUserdataSelection10 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection10) Test userdata selections "occ" ... ok testUserdataSelection11 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection11) Test userdata selections 'occ and occupancy == 1' for pdb3mht ... ok testUserdataSelection12 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection12) Test userdata selections "occ and occupancy == 1" ... ok testUserdataSelection13 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection13) Test userdata selections 'occ and occupancy == 1 and oc10 - 9 == 1' for pdb3mht ... ok testUserdataSelection14 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection14) Test userdata selections "occ and occupancy == 1 and oc10 - 9 == 1" ... ok testUserdataSelection15 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection15) Test userdata selections 'occ and occupancy == 1 and temp < 10' for pdb3mht ... ok testUserdataSelection16 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection16) Test userdata selections "occ and occupancy == 1 and temp < 10" ... ok testUserdataSelection17 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection17) Test userdata selections 'occ > 0' for pdb3mht ... ok testUserdataSelection18 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection18) Test userdata selections "occ > 0" ... ok testUserdataSelection2 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection2) Test userdata selections "temp < 10" ... ok testUserdataSelection3 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection3) Test userdata selections 'temp < 10 and chain D' for pdb3mht ... ok testUserdataSelection4 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection4) Test userdata selections "temp < 10 and chain D" ... ok testUserdataSelection5 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection5) Test userdata selections 'oc10 - 9 == 1' for pdb3mht ... ok testUserdataSelection6 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection6) Test userdata selections "oc10 - 9 == 1" ... ok testUserdataSelection7 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection7) Test userdata selections 'temp < 10' for pdb3mht ... ok testUserdataSelection8 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection8) Test userdata selections "temp < 10" ... ok testUserdataSelection9 (prody.tests.atomic.test_select.TestSelect.testUserdataSelection9) Test userdata selections 'occ' for pdb3mht ... ok testWithinSelection1 (prody.tests.atomic.test_select.TestSelect.testWithinSelection1) Test within selections 'within 10 of index 0' for pdb3mht ... ok testWithinSelection10 (prody.tests.atomic.test_select.TestSelect.testWithinSelection10) Test within selections "within 5 of within 5 of within 5 of index 0" ... ok testWithinSelection11 (prody.tests.atomic.test_select.TestSelect.testWithinSelection11) Test within selections 'exwithin 5 of exwithin 5 of exwithin 5 of index 0' for pdb3mht ... ok testWithinSelection12 (prody.tests.atomic.test_select.TestSelect.testWithinSelection12) Test within selections "exwithin 5 of exwithin 5 of exwithin 5 of index 0" ... ok testWithinSelection13 (prody.tests.atomic.test_select.TestSelect.testWithinSelection13) Test within selections 'within 1 of pdb' for pdb3mht ... ok testWithinSelection14 (prody.tests.atomic.test_select.TestSelect.testWithinSelection14) Test within selections "within 1 of pdb" ... ok testWithinSelection15 (prody.tests.atomic.test_select.TestSelect.testWithinSelection15) Test within selections 'exwithin 1 of pdb' for pdb3mht ... ok testWithinSelection16 (prody.tests.atomic.test_select.TestSelect.testWithinSelection16) Test within selections "exwithin 1 of pdb" ... ok testWithinSelection17 (prody.tests.atomic.test_select.TestSelect.testWithinSelection17) Test within selections 'exwithin 1 of ag' for pdb3mht ... ok testWithinSelection18 (prody.tests.atomic.test_select.TestSelect.testWithinSelection18) Test within selections "exwithin 1 of ag" ... ok testWithinSelection19 (prody.tests.atomic.test_select.TestSelect.testWithinSelection19) Test within selections 'within 100 of index 10000' for pdb3mht ... ok testWithinSelection2 (prody.tests.atomic.test_select.TestSelect.testWithinSelection2) Test within selections "within 10 of index 0" ... ok testWithinSelection20 (prody.tests.atomic.test_select.TestSelect.testWithinSelection20) Test within selections "within 100 of index 10000" ... ok testWithinSelection3 (prody.tests.atomic.test_select.TestSelect.testWithinSelection3) Test within selections 'exwithin 100 of index 0' for pdb3mht ... ok testWithinSelection4 (prody.tests.atomic.test_select.TestSelect.testWithinSelection4) Test within selections "exwithin 100 of index 0" ... ok testWithinSelection5 (prody.tests.atomic.test_select.TestSelect.testWithinSelection5) Test within selections 'exwithin 4 of resname SAH' for pdb3mht ... ok testWithinSelection6 (prody.tests.atomic.test_select.TestSelect.testWithinSelection6) Test within selections "exwithin 4 of resname SAH" ... ok testWithinSelection7 (prody.tests.atomic.test_select.TestSelect.testWithinSelection7) Test within selections '(within 4 of water) and not water' for pdb3mht ... ok testWithinSelection8 (prody.tests.atomic.test_select.TestSelect.testWithinSelection8) Test within selections "(within 4 of water) and not water" ... ok testWithinSelection9 (prody.tests.atomic.test_select.TestSelect.testWithinSelection9) Test within selections 'within 5 of within 5 of within 5 of index 0' for pdb3mht ... ok testWithout_AndSelection1 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection1) Test without_and selections 'coil protein' for pdb3mht ... ok testWithout_AndSelection10 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection10) Test without_and selections "(protein nucleic)" ... ok testWithout_AndSelection11 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection11) Test without_and selections 'noh hetero water' for pdb3mht ... ok testWithout_AndSelection12 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection12) Test without_and selections "noh hetero water" ... ok testWithout_AndSelection13 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection13) Test without_and selections 'ca occupancy > 0' for pdb3mht ... ok testWithout_AndSelection14 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection14) Test without_and selections "ca occupancy > 0" ... ok testWithout_AndSelection15 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection15) Test without_and selections 'ca occupancy - 0 > 0' for pdb3mht ... ok testWithout_AndSelection16 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection16) Test without_and selections "ca occupancy - 0 > 0" ... ok testWithout_AndSelection17 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection17) Test without_and selections 'ca occupancy - 0 > 0 + 0' for pdb3mht ... ok testWithout_AndSelection18 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection18) Test without_and selections "ca occupancy - 0 > 0 + 0" ... ok testWithout_AndSelection19 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection19) Test without_and selections 'occupancy > ca 0' for pdb3mht ... ok testWithout_AndSelection2 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection2) Test without_and selections "coil protein" ... ok testWithout_AndSelection20 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection20) Test without_and selections "occupancy > ca 0" ... ok testWithout_AndSelection21 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection21) Test without_and selections 'noh hetero (water)' for pdb3mht ... ok testWithout_AndSelection22 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection22) Test without_and selections "noh hetero (water)" ... ok testWithout_AndSelection23 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection23) Test without_and selections 'noh hetero not (water)' for pdb3mht ... ok testWithout_AndSelection24 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection24) Test without_and selections "noh hetero not (water)" ... ok testWithout_AndSelection25 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection25) Test without_and selections '(water) hetero' for pdb3mht ... ok testWithout_AndSelection26 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection26) Test without_and selections "(water) hetero" ... ok testWithout_AndSelection27 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection27) Test without_and selections 'ca abs(beta) = beta + abs(0)' for pdb3mht ... ok testWithout_AndSelection28 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection28) Test without_and selections "ca abs(beta) = beta + abs(0)" ... ok testWithout_AndSelection3 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection3) Test without_and selections 'sidechain sc protein' for pdb3mht ... ok testWithout_AndSelection4 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection4) Test without_and selections "sidechain sc protein" ... ok testWithout_AndSelection5 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection5) Test without_and selections 'bbfull bb' for pdb3mht ... ok testWithout_AndSelection6 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection6) Test without_and selections "bbfull bb" ... ok testWithout_AndSelection7 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection7) Test without_and selections '(charged basic)' for pdb3mht ... ok testWithout_AndSelection8 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection8) Test without_and selections "(charged basic)" ... ok testWithout_AndSelection9 (prody.tests.atomic.test_select.TestSelect.testWithout_AndSelection9) Test without_and selections '(protein nucleic)' for pdb3mht ... ok testSetData (prody.tests.atomic.test_subset.TestUserData.testSetData) ... ok testDatafile_1ejg (prody.tests.datafiles.TestDatafiles.testDatafile_1ejg) Test presence of "pdb1ejg.pdb" ... ok testDatafile_1ubi (prody.tests.datafiles.TestDatafiles.testDatafile_1ubi) Test presence of "pdb1ubi.pdb" ... ok testDatafile_1ubi_ca (prody.tests.datafiles.TestDatafiles.testDatafile_1ubi_ca) Test presence of "pdb1ubi_ca.pdb" ... ok testDatafile_2gb1_truncated (prody.tests.datafiles.TestDatafiles.testDatafile_2gb1_truncated) Test presence of "pdb2gb1_truncated.pdb" ... ok testDatafile_2k39_ca (prody.tests.datafiles.TestDatafiles.testDatafile_2k39_ca) Test presence of "pdb2k39_ca.pdb" ... ok testDatafile_2nwl (prody.tests.datafiles.TestDatafiles.testDatafile_2nwl) Test presence of "pdb2nwl-opm.pdb" ... ok testDatafile_3hsy (prody.tests.datafiles.TestDatafiles.testDatafile_3hsy) Test presence of "pdb3hsy.pdb" ... ok testDatafile_3mht (prody.tests.datafiles.TestDatafiles.testDatafile_3mht) Test presence of "pdb3mht.pdb" ... ok testDatafile_3o21 (prody.tests.datafiles.TestDatafiles.testDatafile_3o21) Test presence of "pdb3o21.pdb" ... ok testDatafile_3p3w (prody.tests.datafiles.TestDatafiles.testDatafile_3p3w) Test presence of "pdb3p3w.pdb" ... ok testDatafile_DI (prody.tests.datafiles.TestDatafiles.testDatafile_DI) Test presence of "msa_Cys_knot_di.dat" ... ok testDatafile_Fasta (prody.tests.datafiles.TestDatafiles.testDatafile_Fasta) Test presence of "msa_Cys_knot.fasta" ... ok testDatafile_MSA (prody.tests.datafiles.TestDatafiles.testDatafile_MSA) Test presence of "msa_3hsyA_3o21A.fasta" ... ok testDatafile_MSA_MEW (prody.tests.datafiles.TestDatafiles.testDatafile_MSA_MEW) Test presence of "msa_3hsyA_3o21A_new.fasta" ... ok testDatafile_RTER (prody.tests.datafiles.TestDatafiles.testDatafile_RTER) Test presence of "pdbRTER.pdb" ... ok testDatafile_SCA (prody.tests.datafiles.TestDatafiles.testDatafile_SCA) Test presence of "msa_Cys_knot_sca.dat" ... ok testDatafile_Selex (prody.tests.datafiles.TestDatafiles.testDatafile_Selex) Test presence of "msa_Cys_knot.slx" ... ok testDatafile_Stockholm (prody.tests.datafiles.TestDatafiles.testDatafile_Stockholm) Test presence of "msa_Cys_knot.sth" ... ok testDatafile_anm1ubi_evalues (prody.tests.datafiles.TestDatafiles.testDatafile_anm1ubi_evalues) Test presence of "anm1ubi_evalues.dat" ... ok testDatafile_anm1ubi_hessian (prody.tests.datafiles.TestDatafiles.testDatafile_anm1ubi_hessian) Test presence of "anm1ubi_hessian.coo" ... ok testDatafile_anm1ubi_vectors (prody.tests.datafiles.TestDatafiles.testDatafile_anm1ubi_vectors) Test presence of "anm1ubi_vectors.dat" ... ok testDatafile_commute1ubi (prody.tests.datafiles.TestDatafiles.testDatafile_commute1ubi) Test presence of "commute1ubi.dat" ... ok testDatafile_dcd (prody.tests.datafiles.TestDatafiles.testDatafile_dcd) Test presence of "dcd2k39_truncated.dcd" ... ok testDatafile_dssp (prody.tests.datafiles.TestDatafiles.testDatafile_dssp) Test presence of "pdb1r19_dssp.pdb" ... ok testDatafile_five_digits (prody.tests.datafiles.TestDatafiles.testDatafile_five_digits) Test presence of "pdb1tw7_step3_charmm2namd.pdb" ... ok testDatafile_gnm1ubi_evalues (prody.tests.datafiles.TestDatafiles.testDatafile_gnm1ubi_evalues) Test presence of "gnm1ubi_evalues.dat" ... ok testDatafile_gnm1ubi_kirchhoff (prody.tests.datafiles.TestDatafiles.testDatafile_gnm1ubi_kirchhoff) Test presence of "gnm1ubi_kirchhoff.coo" ... ok testDatafile_gnm1ubi_vectors (prody.tests.datafiles.TestDatafiles.testDatafile_gnm1ubi_vectors) Test presence of "gnm1ubi_vectors.dat" ... ok testDatafile_gromacs (prody.tests.datafiles.TestDatafiles.testDatafile_gromacs) Test presence of "pdb6fpj_Bb_fixed_solv_ions.pdb" ... ok testDatafile_h36 (prody.tests.datafiles.TestDatafiles.testDatafile_h36) Test presence of "pdb1tw7_step3_charmm2namd_doubled_h36.pdb" ... ok testDatafile_h36_ter (prody.tests.datafiles.TestDatafiles.testDatafile_h36_ter) Test presence of "pdb4v8r_h36.pdb" ... ok testDatafile_hex (prody.tests.datafiles.TestDatafiles.testDatafile_hex) Test presence of "pdb1tw7_step3_charmm2namd_doubled_hex.pdb" ... ok testDatafile_hex_ter (prody.tests.datafiles.TestDatafiles.testDatafile_hex_ter) Test presence of "pdb4v8r_hex.pdb" ... ok testDatafile_hit1ubi (prody.tests.datafiles.TestDatafiles.testDatafile_hit1ubi) Test presence of "hit1ubi.dat" ... ok testDatafile_long_chid_cif (prody.tests.datafiles.TestDatafiles.testDatafile_long_chid_cif) Test presence of "mmcif_6zu5.cif" ... ok testDatafile_multi_model_cif (prody.tests.datafiles.TestDatafiles.testDatafile_multi_model_cif) Test presence of "mmcif_6yfy.cif" ... ok testDatafile_multi_model_truncated (prody.tests.datafiles.TestDatafiles.testDatafile_multi_model_truncated) Test presence of "pdb2k39_truncated.pdb" ... ok testDatafile_oneatom (prody.tests.datafiles.TestDatafiles.testDatafile_oneatom) Test presence of "pdb1ejg_oneatom.pdb" ... ok testDatafile_pca2k39_cov (prody.tests.datafiles.TestDatafiles.testDatafile_pca2k39_cov) Test presence of "pca2k39_cov.coo" ... ok testDatafile_pca2k39_evalues (prody.tests.datafiles.TestDatafiles.testDatafile_pca2k39_evalues) Test presence of "pca2k39_evalues.dat" ... ok testDatafile_pca2k39_vectors (prody.tests.datafiles.TestDatafiles.testDatafile_pca2k39_vectors) Test presence of "pca2k39_vectors.dat" ... ok testDatafile_rtb2gb1_hessian (prody.tests.datafiles.TestDatafiles.testDatafile_rtb2gb1_hessian) Test presence of "rtb2gb1_hessian.coo" ... ok testDatafile_rtb2gb1_project (prody.tests.datafiles.TestDatafiles.testDatafile_rtb2gb1_project) Test presence of "rtb2gb1_project.coo" ... ok testDatafile_sti (prody.tests.datafiles.TestDatafiles.testDatafile_sti) Test presence of "xmlSTI.xml" ... ok testMode1d (prody.tests.dynamics.test_editing.TestExtending.testMode1d) ... ok testMode3d (prody.tests.dynamics.test_editing.TestExtending.testMode3d) ... ok testModel1d (prody.tests.dynamics.test_editing.TestExtending.testModel1d) ... ok testModel3d (prody.tests.dynamics.test_editing.TestExtending.testModel3d) ... ok testVector1d (prody.tests.dynamics.test_editing.TestExtending.testVector1d) ... ok testVector3d (prody.tests.dynamics.test_editing.TestExtending.testVector3d) ... ok testModel3d (prody.tests.dynamics.test_editing.TestInterpolating.testModel3d) ... ok testMode1d (prody.tests.dynamics.test_editing.TestSlicing.testMode1d) ... ok testMode3d (prody.tests.dynamics.test_editing.TestSlicing.testMode3d) ... ok testModel1d (prody.tests.dynamics.test_editing.TestSlicing.testModel1d) ... ok testModel3d (prody.tests.dynamics.test_editing.TestSlicing.testModel3d) ... ok testVector1d (prody.tests.dynamics.test_editing.TestSlicing.testVector1d) ... ok testVector3d (prody.tests.dynamics.test_editing.TestSlicing.testVector3d) ... ok testBuildHessianSlow (prody.tests.dynamics.test_enms.TestANM.testBuildHessianSlow) ... ok testBuildMatrixCoordsArray (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCoordsArray) Test output when *coords* is an array. ... ok testBuildMatrixCoordsWrongType (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCoordsWrongType) Test response to wrong type *coords* argument. ... ok testBuildMatrixCutoffInvalidValue (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCutoffInvalidValue) Test response to wrong *cutoff* argument. ... ok testBuildMatrixCutoffWrongType (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCutoffWrongType) Test response to cutoff of wrong type. ... ok testBuildMatrixInvalidGamma (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixInvalidGamma) Test response to invalid *gamma* argument. ... ok testBuildMatrixWrongCoords (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixWrongCoords) Test response to wrong coords.dtype. ... ok testBuildMatrixWrongGamma (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixWrongGamma) Test response to wrong *gamma* argument. ... ok testSetHessianWrongShape (prody.tests.dynamics.test_enms.TestANM.testSetHessianWrongShape) Test response to wrong shape *hessian* argument. ... ok testSetMatrixAcceptableDtype (prody.tests.dynamics.test_enms.TestANM.testSetMatrixAcceptableDtype) Test response to acceptable matrix.dtype. ... ok testSetMatrixNonSquare (prody.tests.dynamics.test_enms.TestANM.testSetMatrixNonSquare) Test response to non-square matrix. ... ok testSetMatrixWrongDim (prody.tests.dynamics.test_enms.TestANM.testSetMatrixWrongDim) Test response to wrong dim *kirchhoff* argument. ... ok testSetMatrixWrongDtype (prody.tests.dynamics.test_enms.TestANM.testSetMatrixWrongDtype) Test response to wrong matrix.dtype. ... ok testSetMatrixWrongType (prody.tests.dynamics.test_enms.TestANM.testSetMatrixWrongType) Test response to wrong matrix type argument. ... ok testEigenvalues (prody.tests.dynamics.test_enms.TestANMResults.testEigenvalues) Test eigenvalues. ... ok testEigenvectors (prody.tests.dynamics.test_enms.TestANMResults.testEigenvectors) Test eigenvectors. ... ok testGetCutoff (prody.tests.dynamics.test_enms.TestANMResults.testGetCutoff) Testing return type of :meth:`~.GNMBase.getCutoff`. ... ok testGetGamma (prody.tests.dynamics.test_enms.TestANMResults.testGetGamma) Testing return type of :meth:`~.GNMBase.getGamma`. ... ok testGetHessian (prody.tests.dynamics.test_enms.TestANMResults.testGetHessian) ... ok testHessian (prody.tests.dynamics.test_enms.TestANMResults.testHessian) Test Hessian matrix. ... ok testHessianSums (prody.tests.dynamics.test_enms.TestANMResults.testHessianSums) ... ok testHessianSymmetry (prody.tests.dynamics.test_enms.TestANMResults.testHessianSymmetry) ... ok testModeSlicing (prody.tests.dynamics.test_enms.TestANMResults.testModeSlicing) ... ok testVariances (prody.tests.dynamics.test_enms.TestANMResults.testVariances) Test variances. ... ok testEigenvalues (prody.tests.dynamics.test_enms.TestEXANMResults.testEigenvalues) Test eigenvalues. ... ok testEigenvectors (prody.tests.dynamics.test_enms.TestEXANMResults.testEigenvectors) Test eigenvectors. ... ok testGetCutoff (prody.tests.dynamics.test_enms.TestEXANMResults.testGetCutoff) Testing return type of :meth:`~.GNMBase.getCutoff`. ... ok testGetGamma (prody.tests.dynamics.test_enms.TestEXANMResults.testGetGamma) Testing return type of :meth:`~.GNMBase.getGamma`. ... ok testGetHessian (prody.tests.dynamics.test_enms.TestEXANMResults.testGetHessian) ... ok testHessian (prody.tests.dynamics.test_enms.TestEXANMResults.testHessian) Test Hessian matrix. ... ok testHessianSums (prody.tests.dynamics.test_enms.TestEXANMResults.testHessianSums) ... ok testHessianSymmetry (prody.tests.dynamics.test_enms.TestEXANMResults.testHessianSymmetry) ... ok testVariances (prody.tests.dynamics.test_enms.TestEXANMResults.testVariances) Test variances. ... ok testBuildMatrixCoordsArray (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixCoordsArray) Test output when *coords* is an array. ... ok testBuildMatrixCoordsWrongType (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixCoordsWrongType) Test response to wrong type *coords* argument. ... ok testBuildMatrixCutoffInvalidValue (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixCutoffInvalidValue) Test response to wrong *cutoff* argument. ... ok testBuildMatrixCutoffWrongType (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixCutoffWrongType) Test response to cutoff of wrong type. ... ok testBuildMatrixInvalidGamma (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixInvalidGamma) Test response to invalid *gamma* argument. ... ok testBuildMatrixWrongCoords (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixWrongCoords) Test response to wrong coords.dtype. ... ok testBuildMatrixWrongGamma (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixWrongGamma) Test response to wrong *gamma* argument. ... ok testSetMatrixAcceptableDtype (prody.tests.dynamics.test_enms.TestGNM.testSetMatrixAcceptableDtype) Test response to acceptable matrix.dtype. ... ok testSetMatrixNonSquare (prody.tests.dynamics.test_enms.TestGNM.testSetMatrixNonSquare) Test response to non-square matrix. ... ok testSetMatrixWrongDim (prody.tests.dynamics.test_enms.TestGNM.testSetMatrixWrongDim) Test response to wrong dim *kirchhoff* argument. ... ok testSetMatrixWrongDtype (prody.tests.dynamics.test_enms.TestGNM.testSetMatrixWrongDtype) Test response to wrong matrix.dtype. ... ok testSetMatrixWrongType (prody.tests.dynamics.test_enms.TestGNM.testSetMatrixWrongType) Test response to wrong matrix type argument. ... ok testBuildKirchoffSlow (prody.tests.dynamics.test_enms.TestGNMResults.testBuildKirchoffSlow) ... ok testCommuteTime (prody.tests.dynamics.test_enms.TestGNMResults.testCommuteTime) ... ok testEigenvalues (prody.tests.dynamics.test_enms.TestGNMResults.testEigenvalues) ... ok testEigenvectors (prody.tests.dynamics.test_enms.TestGNMResults.testEigenvectors) ... ok testGetCutoff (prody.tests.dynamics.test_enms.TestGNMResults.testGetCutoff) Testing return type of :meth:`~.GNMBase.getCutoff`. ... ok testGetGamma (prody.tests.dynamics.test_enms.TestGNMResults.testGetGamma) Testing return type of :meth:`~.GNMBase.getGamma`. ... ok testGetKirchoff (prody.tests.dynamics.test_enms.TestGNMResults.testGetKirchoff) ... ok testKirchhoff (prody.tests.dynamics.test_enms.TestGNMResults.testKirchhoff) ... ok testKirchhoffSums (prody.tests.dynamics.test_enms.TestGNMResults.testKirchhoffSums) ... ok testKirchhoffSymmetry (prody.tests.dynamics.test_enms.TestGNMResults.testKirchhoffSymmetry) ... ok testCalcModes (prody.tests.dynamics.test_enms.TestRTB.testCalcModes) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/eigtools.py:43: DeprecationWarning: Keyword argument 'eigvals' is deprecated in favour of 'subset_by_index' keyword instead and will be removed in SciPy 1.12.0. values, vectors = linalg.eigh(M, turbo=turbo, eigvals=eigvals) ok testHessian (prody.tests.dynamics.test_enms.TestRTB.testHessian) ... ok testProjection (prody.tests.dynamics.test_enms.TestRTB.testProjection) ... ok testGetCutoff (prody.tests.dynamics.test_enms.testGNMBase.testGetCutoff) Testing return type of :meth:`~.GNMBase.getCutoff`. ... ok testGetGamma (prody.tests.dynamics.test_enms.testGNMBase.testGetGamma) Testing return type of :meth:`~.GNMBase.getGamma`. ... ok testBuildMatrixCoordsArray (prody.tests.dynamics.test_pca.TestPCA.testBuildMatrixCoordsArray) Test output when *coords* is an array. ... ok testBuildMatrixCoordsWrongType (prody.tests.dynamics.test_pca.TestPCA.testBuildMatrixCoordsWrongType) Test response to wrong type *coords* argument. ... ok testBuildMatrixWrongCoords (prody.tests.dynamics.test_pca.TestPCA.testBuildMatrixWrongCoords) Test response to wrong coords.dtype. ... ok testSetMatrixAcceptableDtype (prody.tests.dynamics.test_pca.TestPCA.testSetMatrixAcceptableDtype) Test response to acceptable matrix.dtype. ... ok testSetMatrixNonSquare (prody.tests.dynamics.test_pca.TestPCA.testSetMatrixNonSquare) Test response to non-square matrix. ... ok testSetMatrixWrongDim (prody.tests.dynamics.test_pca.TestPCA.testSetMatrixWrongDim) Test response to wrong dim *kirchhoff* argument. ... ok testSetMatrixWrongDtype (prody.tests.dynamics.test_pca.TestPCA.testSetMatrixWrongDtype) Test response to wrong matrix.dtype. ... ok testSetMatrixWrongType (prody.tests.dynamics.test_pca.TestPCA.testSetMatrixWrongType) Test response to wrong matrix type argument. ... ok testBuildMatrixCoordsArray (prody.tests.dynamics.test_pca.TestPCAResults.testBuildMatrixCoordsArray) Test output when *coords* is an array. ... ok testBuildMatrixCoordsWrongType (prody.tests.dynamics.test_pca.TestPCAResults.testBuildMatrixCoordsWrongType) Test response to wrong type *coords* argument. ... ok testBuildMatrixWrongCoords (prody.tests.dynamics.test_pca.TestPCAResults.testBuildMatrixWrongCoords) Test response to wrong coords.dtype. ... ok testCovariance (prody.tests.dynamics.test_pca.TestPCAResults.testCovariance) ... ok testCovarianceSymmetry (prody.tests.dynamics.test_pca.TestPCAResults.testCovarianceSymmetry) ... ok testEigenvalues (prody.tests.dynamics.test_pca.TestPCAResults.testEigenvalues) ... ok testEigenvectors (prody.tests.dynamics.test_pca.TestPCAResults.testEigenvectors) ... ok testNumModesAll (prody.tests.dynamics.test_pca.TestPCAResults.testNumModesAll) ... ok testNumModesSet (prody.tests.dynamics.test_pca.TestPCAResults.testNumModesSet) ... ok testSetMatrixAcceptableDtype (prody.tests.dynamics.test_pca.TestPCAResults.testSetMatrixAcceptableDtype) Test response to acceptable matrix.dtype. ... ok testSetMatrixNonSquare (prody.tests.dynamics.test_pca.TestPCAResults.testSetMatrixNonSquare) Test response to non-square matrix. ... ok testSetMatrixWrongDim (prody.tests.dynamics.test_pca.TestPCAResults.testSetMatrixWrongDim) Test response to wrong dim *kirchhoff* argument. ... ok testSetMatrixWrongDtype (prody.tests.dynamics.test_pca.TestPCAResults.testSetMatrixWrongDtype) Test response to wrong matrix.dtype. ... ok testSetMatrixWrongType (prody.tests.dynamics.test_pca.TestPCAResults.testSetMatrixWrongType) Test response to wrong matrix type argument. ... ok testSlicing (prody.tests.dynamics.test_signature.TestSDArray.testSlicing) ... ok testCoordinates (prody.tests.ensemble.test_conformation.TestConformation.testCoordinates) ... ok testCoordinatesForAll (prody.tests.ensemble.test_conformation.TestConformation.testCoordinatesForAll) ... ok testGetIndex (prody.tests.ensemble.test_conformation.TestConformation.testGetIndex) Test get index function. ... ok testGetNumAtoms (prody.tests.ensemble.test_conformation.TestConformation.testGetNumAtoms) Test get index function. ... ok testWeights (prody.tests.ensemble.test_conformation.TestConformation.testWeights) ... ok testCoordinates (prody.tests.ensemble.test_conformation.TestPDBConformation.testCoordinates) ... ok testCoordinatesForAll (prody.tests.ensemble.test_conformation.TestPDBConformation.testCoordinatesForAll) ... ok testGetIndex (prody.tests.ensemble.test_conformation.TestPDBConformation.testGetIndex) ... ok testGetNumAtoms (prody.tests.ensemble.test_conformation.TestPDBConformation.testGetNumAtoms) ... ok testWeights (prody.tests.ensemble.test_conformation.TestPDBConformation.testWeights) ... ok testWeightsForAll (prody.tests.ensemble.test_conformation.TestPDBConformation.testWeightsForAll) ... ok testConcatenation (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenation) Test concatenation of ensembles without weights. ... ok testConcatenationNoweightsWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenationNoweightsWeights) Test concatenation of ensembles without and with weights. ... ok testConcatenationWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenationWeights) Test concatenation of ensembles with weights. ... ok testConcatenationWeightsNoweights (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenationWeightsNoweights) Test concatenation of ensembles with and without weights. ... ok testDelCoordsetAll (prody.tests.ensemble.test_ensemble.TestEnsemble.testDelCoordsetAll) ... ok testDelCoordsetMiddle (prody.tests.ensemble.test_ensemble.TestEnsemble.testDelCoordsetMiddle) ... ok testGetCoordinates (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetCoordinates) Test correctness of reference coordinates. ... ok testGetCoordsets (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetCoordsets) Test correctness of all coordinates. ... ok testGetNumAtoms (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetNumAtoms) ... ok testGetNumCsets (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetNumCsets) ... ok testGetRMSDs (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetRMSDs) ... ok testGetRMSDsWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetRMSDsWeights) ... ok testGetWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetWeights) Test correctness of all weights. ... ok testIterCoordsets (prody.tests.ensemble.test_ensemble.TestEnsemble.testIterCoordsets) Test coordinate iteration. ... ok testSelection (prody.tests.ensemble.test_ensemble.TestEnsemble.testSelection) Test atom selection of ensemble. ... ok testSlicing (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicing) Test slicing operation. ... ok testSlicingCopy (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicingCopy) Test making a copy by slicing operation. ... ok testSlicingList (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicingList) Test slicing with a list. ... ok testSlicingWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicingWeights) Test slicing operation with weights. ... ok testSuperpose (prody.tests.ensemble.test_ensemble.TestEnsemble.testSuperpose) ... ok testSuperposeWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testSuperposeWeights) ... ok testResults (prody.tests.ensemble.test_functions.TestBuildPDBEnsemble.testResults) ... ok testInvalidType (prody.tests.ensemble.test_functions.TestCalcOccupancies.testInvalidType) ... ok testResults (prody.tests.ensemble.test_functions.TestCalcOccupancies.testResults) ... ok testWeightsNone (prody.tests.ensemble.test_functions.TestCalcOccupancies.testWeightsNone) ... ok testResults (prody.tests.ensemble.test_functions.TestTrimPDBEnsemble.testResults) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/sequence.py:52: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return self._array.tostring().decode() ok testAddCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testAddCoordsets) ... ok testConcatenation (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testConcatenation) Test concatenation of PDB ensembles. ... ok testDelCoordsetAll (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testDelCoordsetAll) Test consequences of deleting all coordinate sets. ... ok testDelCoordsetMiddle (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testDelCoordsetMiddle) ... ok testDelCoordsetMiddleTrans (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testDelCoordsetMiddleTrans) ... ok testGetCoordinates (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetCoordinates) ... ok testGetCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetCoordsets) ... ok testGetNumAtoms (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetNumAtoms) ... ok testGetNumCsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetNumCsets) ... ok testGetWeights (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetWeights) ... ok testIterCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testIterCoordsets) ... ok testSlicing (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicing) ... ok testSlicingCopy (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicingCopy) ... ok testSlicingList (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicingList) ... ok testSlicingWeights (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicingWeights) ... ok testAllSearch (prody.tests.kdtree.test_kdtree.TestKDTree.testAllSearch) ... ok testSearch (prody.tests.kdtree.test_kdtree.TestKDTree.testSearch) ... ok testPairNoPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPairNoPBC) ... ok testPairPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPairPBC) ... ok testPointNoPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPointNoPBC) ... ok testPointPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPointPBC) ... ok testMINvsMAX (prody.tests.measure.test_contacts.TestContacts.testMINvsMAX) ... ok testPBCvsNONE (prody.tests.measure.test_contacts.TestContacts.testPBCvsNONE) ... ok testAtomicArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testAtomicArgumentSwitching) ... ok testCoordArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testCoordArgumentSwitching) ... ok testNoPBC (prody.tests.measure.test_contacts.TestNeighbors.testNoPBC) ... ok testPBC (prody.tests.measure.test_contacts.TestNeighbors.testPBC) ... ok testPBCAtomicArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testPBCAtomicArgumentSwitching) ... ok testPBCCoordArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testPBCCoordArgumentSwitching) ... ok testCenter (prody.tests.measure.test_measure.TestCenter.testCenter) ... ok testCenterWithWeights (prody.tests.measure.test_measure.TestCenter.testCenterWithWeights) ... ok testMultiCoordsets (prody.tests.measure.test_measure.TestCenter.testMultiCoordsets) ... ok testMultiCoordsetsWithWeights (prody.tests.measure.test_measure.TestCenter.testMultiCoordsetsWithWeights) ... ok testCTerPhi (prody.tests.measure.test_measure.TestDihedrals.testCTerPhi) ... ok testCTerPsi (prody.tests.measure.test_measure.TestDihedrals.testCTerPsi) ... ok testCalcPhi (prody.tests.measure.test_measure.TestDihedrals.testCalcPhi) ... ok testCalcPsi (prody.tests.measure.test_measure.TestDihedrals.testCalcPsi) ... ok testNTerPhi (prody.tests.measure.test_measure.TestDihedrals.testNTerPhi) ... ok testNTerPsi (prody.tests.measure.test_measure.TestDihedrals.testNTerPsi) ... ok testPBC (prody.tests.measure.test_measure.TestDistances.testPBC) ... ok testPBCSymmetry (prody.tests.measure.test_measure.TestDistances.testPBCSymmetry) ... ok testMSF (prody.tests.measure.test_measure.TestMSF.testMSF) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/dcdfile.py:273: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead xyz = fromstring(self._file.read(self._itemsize * n_floats), /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/dcdfile.py:320: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead data = fromstring(data, self._dtype) /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/dcdfile.py:294: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead unitcell = fromstring(self._file.read(48), dtype=np.float64) ok testMSFfloat (prody.tests.measure.test_measure.TestMSF.testMSFfloat) ... ok testByArgument (prody.tests.measure.test_transform.TestMoveAtoms.testByArgument) ... ok testToArgument (prody.tests.measure.test_transform.TestMoveAtoms.testToArgument) ... ok testTransformation (prody.tests.measure.test_transform.TestMoveAtoms.testTransformation) ... ok testWrap (prody.tests.measure.test_transform.TestWrapAtoms.testWrap) ... ok testAgArgMultiModel (prody.tests.proteins.test_ciffile.TestParseMMCIF.testAgArgMultiModel) Test number of coordinate sets when using *ag* arguments. ... ok testAgArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testAgArgument) Test outcome of valid and invalid *ag* arguments. ... /usr/lib/python3.12/traceback.py:241: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/mmcif_6yfy.cif' mode='rt' encoding='UTF-8'> tb.tb_frame.clear() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testChainArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testChainArgument) Test outcome of valid and invalid *chain* arguments. ... ok testLongChainArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testLongChainArgument) Test outcome of valid and invalid *chain* arguments. ... /usr/lib/python3.12/traceback.py:241: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/mmcif_6zu5.cif' mode='rt' encoding='UTF-8'> tb.tb_frame.clear() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testModelArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testModelArgument) Test outcome of valid and invalid *model* arguments. ... ok testPDBArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testPDBArgument) Test outcome of invalid *pdb* arguments. ... ok testSubsetArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testSubsetArgument) Test outcome of valid and invalid *subset* arguments. ... ok testTitleArgument (prody.tests.proteins.test_ciffile.TestParseMMCIF.testTitleArgument) Test outcome of *title* argument. ... ok testUsualCase (prody.tests.proteins.test_ciffile.TestParseMMCIF.testUsualCase) Test the outcome of a simple parsing scenario. ... ok testDSSPBridgePartners (prody.tests.proteins.test_dssp.TestDSSPFunctions.testDSSPBridgePartners) Check if the DSSP bridge-partners were correctly parsed and ... skipped 'dssp is not found' testHeaderContent (prody.tests.proteins.test_header.TestParsePDBHeaderOnly.testHeaderContent) ... ok testHeaderType (prody.tests.proteins.test_header.TestParsePDBHeaderOnly.testHeaderType) ... ok testCompressedArgument (prody.tests.proteins.test_localpdb.TestFetchPDB.testCompressedArgument) Test decompressing fetched PDB files. ... skipped 'Not running tests needing network access.' testFetchingMultipleFiles (prody.tests.proteins.test_localpdb.TestFetchPDB.testFetchingMultipleFiles) Test the outcome of fetching multiple PDB files. ... skipped 'Not running tests needing network access.' testFetchingSingleFile (prody.tests.proteins.test_localpdb.TestFetchPDB.testFetchingSingleFile) Test the outcome of fetching a single PDB file. ... skipped 'Not running tests needing network access.' testInvalidPDBIdentifier (prody.tests.proteins.test_localpdb.TestFetchPDB.testInvalidPDBIdentifier) Test outcome of passing invalid PDB identifiers. ... ok testAgArgMultiModel (prody.tests.proteins.test_pdbfile.TestParsePDB.testAgArgMultiModel) Test number of coordinate sets when using *ag* arguments. ... ok testAgArgSingleModel (prody.tests.proteins.test_pdbfile.TestParsePDB.testAgArgSingleModel) Test number of coordinate sets when using *ag* arguments. ... ok testAgArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testAgArgument) Test outcome of valid and invalid *ag* arguments. ... /usr/lib/python3.12/traceback.py:241: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb2k39_truncated.pdb' mode='rt' encoding='UTF-8'> tb.tb_frame.clear() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testChainArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testChainArgument) Test outcome of valid and invalid *chain* arguments. ... ok testFiveDigitResnum (prody.tests.proteins.test_pdbfile.TestParsePDB.testFiveDigitResnum) Test parsing PDB files with five digit resnums ... ok testHexResnum (prody.tests.proteins.test_pdbfile.TestParsePDB.testHexResnum) Test parsing PDB files with hexadecimal resnums ... ok testHexSerial (prody.tests.proteins.test_pdbfile.TestParsePDB.testHexSerial) Test parsing PDB files with hexadecimal serial numbers ... ok testHybrid36Resnum (prody.tests.proteins.test_pdbfile.TestParsePDB.testHybrid36Resnum) Test parsing PDB files with Hybrid36 resnums ... ok testHybrid36Serial (prody.tests.proteins.test_pdbfile.TestParsePDB.testHybrid36Serial) Test parsing PDB files with Hybrid36 serial numbers ... ok testModelArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testModelArgument) Test outcome of valid and invalid *model* arguments. ... ok testPDBArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testPDBArgument) Test outcome of invalid *pdb* arguments. ... ok testSubsetArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testSubsetArgument) Test outcome of valid and invalid *subset* arguments. ... ok testTitleArgument (prody.tests.proteins.test_pdbfile.TestParsePDB.testTitleArgument) Test outcome of *title* argument. ... ok testUsualCase (prody.tests.proteins.test_pdbfile.TestParsePDB.testUsualCase) Test the outcome of a simple parsing scenario. ... ok testAltlocA (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc.testAltlocA) ... ok testAltlocB (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc.testAltlocB) ... ok testAltlocC (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc.testAltlocC) ... ok testAltlocNone (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc.testAltlocNone) ... ok testAtomGroupContent (prody.tests.proteins.test_pdbfile.TestParsePDBHeaderAndAllModels.testAtomGroupContent) ... ok testAtomGroupType (prody.tests.proteins.test_pdbfile.TestParsePDBHeaderAndAllModels.testAtomGroupType) ... ok testModelArgument (prody.tests.proteins.test_pdbfile.TestWritePDB.testModelArgument) Test valid and invalid model arguments. ... /usr/lib/python3.12/traceback.py:241: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/test.pdb' mode='wt' encoding='UTF-8'> tb.tb_frame.clear() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParsingOutput (prody.tests.proteins.test_pdbfile.TestWritePDB.testParsingOutput) Test if parsing output is the same as parsing original file. ... ok testWritingHex (prody.tests.proteins.test_pdbfile.TestWritePDB.testWritingHex) Test if output from writing hexadecimal is as expected. ... ok testWritingHexTer (prody.tests.proteins.test_pdbfile.TestWritePDB.testWritingHexTer) Test if output from writing hexadecimal with TER lines is as expected. ... ok testWritingHybrid36 (prody.tests.proteins.test_pdbfile.TestWritePDB.testWritingHybrid36) Test if output from writing Hybrid36 is as expected. ... ok testWritingHybrid36Ter (prody.tests.proteins.test_pdbfile.TestWritePDB.testWritingHybrid36Ter) Test if output from writing Hybrid36 with TER lines is as expected. ... ok testWritingSecstrs (prody.tests.proteins.test_pdbfile.TestWritePDB.testWritingSecstrs) Test if output from writing secstrs is as expected. ... ok testCompressed (prody.tests.proteins.test_wwpdb.TestFTP.testCompressed) ... skipped 'Not running tests needing network access.' testDecompressed (prody.tests.proteins.test_wwpdb.TestFTP.testDecompressed) ... skipped 'Not running tests needing network access.' testCompressed (prody.tests.proteins.test_wwpdb.TestHTTP.testCompressed) ... skipped 'Not running tests needing network access.' testDecompressed (prody.tests.proteins.test_wwpdb.TestHTTP.testDecompressed) ... skipped 'Not running tests needing network access.' testBuildMSAlocal (prody.tests.sequence.test_analysis.TestBuildMSA.testBuildMSAlocal) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msa.py:218: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison return all(other == self._msa) ok testResidueCount (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testResidueCount) ... ok testResidueOccupancy (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testResidueOccupancy) ... ok testSequenceCount (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testSequenceCount) ... ok testSequenceOccupancy (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testSequenceOccupancy) ... ok testMATLAB (prody.tests.sequence.test_analysis.TestCalcMeff.testMATLAB) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcMeff.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcMeff.testTwentyReversed) ... ok testZero1 (prody.tests.sequence.test_analysis.TestCalcMeff.testZero1) ... ok testZero2 (prody.tests.sequence.test_analysis.TestCalcMeff.testZero2) ... ok testAmbiguity (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity) ... ok testAmbiguity2 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity2) ... ok testAmbiguity3 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity3) ... ok testAmbiguity4 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity4) ... ok testAmbiguity5 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity5) ... ok testAmbiguity6 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity6) ... ok testAmbiguity7 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity7) ... ok testInf (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testInf) ... ok testNoAmbiguity (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testNoAmbiguity) ... ok testNorm (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testNorm) ... ok testNorm2 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testNorm2) ... ok testSixSequences (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testSixSequences) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testTwentyReversed) ... ok testAmbiguity (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity) ... ok testAmbiguity2 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity2) ... ok testAmbiguity3 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity3) ... ok testAmbiguity4 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity4) ... ok testAmbiguity5 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity5) ... ok testAmbiguity6 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity6) ... ok testAmbiguity7 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity7) ... ok testFourSequences (prody.tests.sequence.test_analysis.TestCalcOMES.testFourSequences) ... ok testInf (prody.tests.sequence.test_analysis.TestCalcOMES.testInf) ... ok testNoAmbiguity (prody.tests.sequence.test_analysis.TestCalcOMES.testNoAmbiguity) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcOMES.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcOMES.testTwentyReversed) ... ok testZero (prody.tests.sequence.test_analysis.TestCalcOMES.testZero) ... ok testMATLAB (prody.tests.sequence.test_analysis.TestCalcSCA.testMATLAB) ... ok testZero (prody.tests.sequence.test_analysis.TestCalcSCA.testZero) ... ok testAmbiguous (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testAmbiguous) ... ok testGapDividend (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testGapDividend) ... ok testSixSequences (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testSixSequences) ... ok testSmallProbability (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testSmallProbability) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testTwenty) ... ok testMATLAB10 (prody.tests.sequence.test_analysis.TestDirectInfo.testMATLAB10) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/analysis.py:592: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. c = matrix.dot(matrix(zeros((length*q, 1), float)), /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/analysis.py:593: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. matrix(zeros((1, length*q), float))) /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:69: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return matrix(data, dtype=dtype, copy=False) ok testMATLAB8 (prody.tests.sequence.test_analysis.TestDirectInfo.testMATLAB8) ... ok testTwenty (prody.tests.sequence.test_analysis.TestDirectInfo.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestDirectInfo.testTwentyReversed) ... ok testZero (prody.tests.sequence.test_analysis.TestDirectInfo.testZero) ... ok testZero1 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero1) ... ok testZero2 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero2) ... ok testZero3 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero3) ... ok testZero4 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero4) ... ok testIdentityMatrix (prody.tests.sequence.test_analysis.TestIdentity.testIdentityMatrix) ... ok testIdentityMatrixNonTurbo (prody.tests.sequence.test_analysis.TestIdentity.testIdentityMatrixNonTurbo) ... ok testUnique (prody.tests.sequence.test_analysis.TestUnique.testUnique) ... ok testUnique2 (prody.tests.sequence.test_analysis.TestUnique.testUnique2) ... ok testMerge (prody.tests.sequence.test_msa.TestMerging.testMerge) ... ok testAddition (prody.tests.sequence.test_msa.TestRefinement.testAddition) ... ok testAll (prody.tests.sequence.test_msa.TestRefinement.testAll) ... ok testColocc (prody.tests.sequence.test_msa.TestRefinement.testColocc) ... ok testExtension (prody.tests.sequence.test_msa.TestRefinement.testExtension) ... ok testLabel (prody.tests.sequence.test_msa.TestRefinement.testLabel) ... ok testRowCol (prody.tests.sequence.test_msa.TestRefinement.testRowCol) ... ok testRowocc (prody.tests.sequence.test_msa.TestRefinement.testRowocc) ... ok testSeqid (prody.tests.sequence.test_msa.TestRefinement.testSeqid) ... ok testSeqidLabel (prody.tests.sequence.test_msa.TestRefinement.testSeqidLabel) ... ok testMSAFile (prody.tests.sequence.test_msafile.TestMSAFile.testMSAFile) ... ok testWriteFasta (prody.tests.sequence.test_msafile.TestMSAFile.testWriteFasta) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/sequence.py:32: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead self._seq = fromstring(one, '|S1') ok testWriteSelex (prody.tests.sequence.test_msafile.TestMSAFile.testWriteSelex) ... ok testWriteStockholm (prody.tests.sequence.test_msafile.TestMSAFile.testWriteStockholm) ... ok testArray (prody.tests.sequence.test_msafile.TestParseMSA.testArray) ... ok testIterator (prody.tests.sequence.test_msafile.TestParseMSA.testIterator) ... ok testMapping (prody.tests.sequence.test_msafile.TestParseMSA.testMapping) ... ok testFasta (prody.tests.sequence.test_msafile.TestWriteMSA.testFasta) ... ok testSelex (prody.tests.sequence.test_msafile.TestWriteMSA.testSelex) ... ok testStringConversion (prody.tests.sequence.test_sequence.TestSequence.testStringConversion) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/sequence.py:36: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead self._seq = fromstring(args[0], '|S1') ok testParseDCD (prody.tests.trajectory.test_dcdfile.TestDCDFile.testParseDCD) ... ok testWrite (prody.tests.trajectory.test_dcdfile.TestDCDFile.testWrite) ... ok testWriteDCD (prody.tests.trajectory.test_dcdfile.TestDCDFile.testWriteDCD) ... ok testWriteModeAppend (prody.tests.trajectory.test_dcdfile.TestDCDFile.testWriteModeAppend) ... ok testAll (prody.tests.trajectory.test_frame.TestSuperpose.testAll) ... ok testCarbon (prody.tests.trajectory.test_frame.TestSuperpose.testCarbon) ... ok testCoords (prody.tests.utilities.test_checkers.TestCheckCoords.testCoords) ... ok testCoordset (prody.tests.utilities.test_checkers.TestCheckCoords.testCoordset) ... ok testCoordsetNatoms (prody.tests.utilities.test_checkers.TestCheckCoords.testCoordsetNatoms) ... ok testInvalidCoords (prody.tests.utilities.test_checkers.TestCheckCoords.testInvalidCoords) ... ok testCorrectMonotypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testCorrectMonotypeOneArg) ... ok testCorrectMonotypeTwoArgs (prody.tests.utilities.test_checkers.testCheckTypes.testCorrectMonotypeTwoArgs) ... ok testCorrectMultitypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testCorrectMultitypeOneArg) ... ok testWrongMonotypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testWrongMonotypeOneArg) ... ok testWrongMonotypeTwoArgs (prody.tests.utilities.test_checkers.testCheckTypes.testWrongMonotypeTwoArgs) ... ok testWrongMultitypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testWrongMultitypeOneArg) ... ok testContinuous (prody.tests.utilities.test_misctools.TestRangeString.testContinuous) ... ok testGapped (prody.tests.utilities.test_misctools.TestRangeString.testGapped) ... ok testNegative (prody.tests.utilities.test_misctools.TestRangeString.testNegative) ... ok testRepeated (prody.tests.utilities.test_misctools.TestRangeString.testRepeated) ... ok testBuffer (prody.tests.utilities.test_pathtools.TestGunzip.testBuffer) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_pathtools.py:34: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/compressed.txt.gz'> buff = open(self.gzfn, 'rb').read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFile (prody.tests.utilities.test_pathtools.TestGunzip.testFile) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_pathtools.py:29: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/compressed.txt' mode='r' encoding='UTF-8'> text = open(fn).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok ---------------------------------------------------------------------- Ran 971 tests in 369.058s OK (skipped=39) create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:305: /usr/bin/python3.11 setup.py install --root /<>/debian/python3-prody running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running install_lib creating /<>/debian/python3-prody creating /<>/debian/python3-prody/usr creating /<>/debian/python3-prody/usr/lib creating /<>/debian/python3-prody/usr/lib/python3.11 creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_clustenm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_anm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_catdcd.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_contacts.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_pca.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/nmaoptions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_blast.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_select.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_fetch.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_energy.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_biomol.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_align.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_eda.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_gnm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_eda.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_select.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_contacts.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_catdcd.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_fetch.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_gnm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_biomol.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_energy.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_clustenm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_pca.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_anm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_align.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/prody_blast.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/__pycache__/nmaoptions.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/apptools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/__pycache__/apptools.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_rankorder.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_fetch.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_filter.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_search.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_coevol.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_conserv.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_merge.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_refine.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__pycache__/evol_conserv.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__pycache__/evol_filter.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__pycache__/evol_coevol.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__pycache__/evol_fetch.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__pycache__/evol_refine.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__pycache__/evol_search.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__pycache__/evol_occupancy.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__pycache__/evol_rankorder.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/__pycache__/evol_merge.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_occupancy.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/straw.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/norm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__pycache__/functions.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__pycache__/cluster.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__pycache__/hic.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__pycache__/norm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/cluster.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.11_prody/build/prody/chromatin/hic.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/goa.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/pfam.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/uniprot.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/quartataweb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/cath.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/__pycache__/goa.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/__pycache__/dali.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/__pycache__/pfam.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/__pycache__/uniprot.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/__pycache__/cath.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/__pycache__/quartataweb.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/database/dali.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/ccd.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/bird.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/__pycache__/functions.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/__pycache__/bird.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/__pycache__/ccd.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/__pycache__/pdbligands.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/compounds/pdbligands.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/trajbase.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/dcdfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/trajfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/frame.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/psffile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/trajectory.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/psffile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/trajfile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/trajectory.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/dcdfile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/trajbase.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/frame.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/doctools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/seqtools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/drawtools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/pathtools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/misctools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/TreeConstruction.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/laptools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles/saxs_water.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles/mod_res_map.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/datafiles creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/doctools.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/eigtools.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/logger.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/settings.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/checkers.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/pathtools.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/seqtools.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/TreeConstruction.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/laptools.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/catchall.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/misctools.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/legacy.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/checkers.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/settings.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/eigtools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/catchall.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/utilities/logger.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition copying /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition copying /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition/spectrus.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition/__pycache__/spectrus.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/residue.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/angle.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/fields.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/segment.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/donor.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/hierview.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/acceptor.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/bond.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/atomgroup.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/crossterm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/atomic.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/atommap.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/pointer.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/nbexclusion.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/chain.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/subset.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/improper.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/atom.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/selection.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/dihedral.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/atom.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/functions.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/selection.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/atomic.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/improper.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/atommap.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/flags.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/residue.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/subset.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/bond.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/nbexclusion.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/atomgroup.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/crossterm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/segment.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/select.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/dihedral.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/fields.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/acceptor.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/pointer.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/hierview.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/donor.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/angle.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/chain.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/select.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/atomic/flags.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/test_prody_pca.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/test_prody_anm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/test_prody_examples.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/test_prody_catdcd.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/test_prody_gnm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/__pycache__/test_prody_anm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/__pycache__/test_prody_examples.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/__pycache__/test_prody_gnm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/__pycache__/test_prody_catdcd.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/__pycache__/test_prody_pca.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/apps/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory/test_dcdfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory/test_frame.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory/__pycache__/test_frame.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory/__pycache__/test_dcdfile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/test_checkers.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/__pycache__/test_misctools.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/__pycache__/test_checkers.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/__pycache__/test_pathtools.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/test_misctools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities/test_pathtools.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_subset.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_select.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_atommap.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_hierview.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_atomic.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/test_fragment.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/__pycache__/test_hierview.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/__pycache__/test_atommap.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/__pycache__/test_atomic.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/__pycache__/test_fragment.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/__pycache__/test_subset.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/__pycache__/test_select.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_header.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_pdbfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_ciffile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_wwpdb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_localpdb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/__pycache__/test_ciffile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/__pycache__/test_dssp.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/__pycache__/test_header.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/__pycache__/test_pdbfile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/__pycache__/test_localpdb.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/__pycache__/test_wwpdb.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/test_dssp.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pca2k39_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/gnm1ubi_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/anm1ubi_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/rtb2gb1_project.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/exanm2nwl_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/gnm1ubi_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/exanm2nwl_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb2k39_ca.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/hit1ubi.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb3o21.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1r19_dssp.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/commute1ubi.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/dcd2k39_truncated.dcd -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_Cys_knot.slx -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb2nwl-opm.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_Cys_knot_di.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/rtb2gb1_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb3hsy.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb3mht.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1ejg.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/exanm2nwl_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pca2k39_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_Cys_knot.sth -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/mmcif_6zu5.cif -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_Cys_knot.fasta -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/xmlSTI.xml -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/mmcif_6yfy.cif -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pca2k39_cov.coo -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb2k39_truncated.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdbRTER.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb4v8r_hex.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1ubi.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/anm1ubi_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb4v8r_h36.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/anm1ubi_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1ubi_ca.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles/pdb3p3w.pdb -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/test_pca.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/test_signature.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/test_editing.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/test_enms.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/__pycache__/test_pca.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/__pycache__/test_signature.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/__pycache__/test_editing.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/__pycache__/test_enms.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/test_msafile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/test_sequence.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/test_analysis.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/__pycache__/test_msa.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/__pycache__/test_analysis.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/__pycache__/test_msafile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/__pycache__/test_sequence.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/test_msa.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/test_conformation.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/test_ensemble.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/test_functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/test_pdbensemble.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/__pycache__/test_ensemble.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/__pycache__/test_conformation.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/__pycache__/test_pdbensemble.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/__pycache__/test_functions.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree/test_kdtree.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree/__pycache__/test_kdtree.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/test_transform.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/test_contacts.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/test_measure.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/__pycache__/test_measure.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/__pycache__/test_contacts.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/__pycache__/test_transform.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/tests/measure/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/starfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/fixer.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/ccealign.cpython-311-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/blastpdb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/pdbfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/stride.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/emdfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/compare.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/wwpdb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/waterbridges.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/functions.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/cifheader.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/ciffile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/pdbfile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/fixer.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/blastpdb.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/dssp.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/emdfile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/pdbclusters.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/localpdb.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/stride.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/wwpdb.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/starfile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/compare.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/__pycache__/header.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/waterbridges.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/pdbclusters.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/cifheader.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/header.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/localpdb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/dssp.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.11_prody/build/prody/proteins/ciffile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/vmdfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/bbenm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/analysis.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/smtools.cpython-311-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/bildfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/signature.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/imanm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/sampling.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/plotting.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/modeset.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/gnm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/anm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/mechstiff.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/gamma.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/essa.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/perturb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/adaptive.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/heatmapper.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/nmdfile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/entropy.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/exanm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/pca.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/editing.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/compare.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/nma.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/entropy.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/sampling.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/rtb.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/exgnm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/functions.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/signature.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/gamma.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/mechstiff.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/heatmapper.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/nmdfile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/editing.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/modeset.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/bildfile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/mode.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/imanm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/pca.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/essa.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/plotting.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/clustenm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/exanm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/adaptive.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/analysis.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/vmdfile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/perturb.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/nma.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/compare.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/gnm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/__pycache__/anm.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/rtbtools.cpython-311-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/exgnm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/rtb.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/mode.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.11_prody/build/prody/dynamics/clustenm.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msatools.cpython-311-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msaio.cpython-311-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/analysis.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/plotting.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/seqtools.cpython-311-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/sequence.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/__pycache__/msa.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/__pycache__/msafile.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/__pycache__/sequence.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/__pycache__/plotting.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/__pycache__/analysis.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msa.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.11_prody/build/prody/sequence/msafile.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/functions.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/ensemble.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/conformation.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/__pycache__/functions.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/__pycache__/conformation.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/__pycache__/ensemble.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/__pycache__/pdbensemble.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/ensemble/pdbensemble.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree/_CKDTree.cpython-311-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree/kdtree.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree/__pycache__/kdtree.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/kdtree/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/contacts.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/transform.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure creating /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/__pycache__/transform.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/__pycache__/contacts.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/__pycache__/measure.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/__pycache__/__init__.cpython-311.pyc -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/__pycache__ copying /<>/.pybuild/cpython3_3.11_prody/build/prody/measure/measure.py -> /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/apptools.py to apptools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/straw.py to straw.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/norm.py to norm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/cluster.py to cluster.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/hic.py to hic.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/goa.py to goa.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/pfam.py to pfam.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/uniprot.py to uniprot.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/quartataweb.py to quartataweb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/cath.py to cath.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/dali.py to dali.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/ccd.py to ccd.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/bird.py to bird.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/pdbligands.py to pdbligands.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/trajbase.py to trajbase.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/trajfile.py to trajfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/frame.py to frame.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/psffile.py to psffile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/trajectory.py to trajectory.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/doctools.py to doctools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/seqtools.py to seqtools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/drawtools.py to drawtools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/pathtools.py to pathtools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/misctools.py to misctools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/laptools.py to laptools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/legacy.py to legacy.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/checkers.py to checkers.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/settings.py to settings.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/eigtools.py to eigtools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/catchall.py to catchall.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/logger.py to logger.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/residue.py to residue.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/angle.py to angle.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/fields.py to fields.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/segment.py to segment.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/donor.py to donor.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/hierview.py to hierview.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/acceptor.py to acceptor.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/bond.py to bond.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atomgroup.py to atomgroup.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/crossterm.py to crossterm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atomic.py to atomic.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atommap.py to atommap.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/pointer.py to pointer.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/chain.py to chain.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/subset.py to subset.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/improper.py to improper.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atom.py to atom.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/selection.py to selection.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/dihedral.py to dihedral.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/select.py to select.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/flags.py to flags.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_select.py to test_select.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_header.py to test_header.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/test_transform.py to test_transform.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/test_measure.py to test_measure.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/starfile.py to starfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/fixer.py to fixer.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/blastpdb.py to blastpdb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/pdbfile.py to pdbfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/stride.py to stride.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/emdfile.py to emdfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/compare.py to compare.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/wwpdb.py to wwpdb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/waterbridges.py to waterbridges.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/cifheader.py to cifheader.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/header.py to header.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/localpdb.py to localpdb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/dssp.py to dssp.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/ciffile.py to ciffile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/bbenm.py to bbenm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/analysis.py to analysis.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/bildfile.py to bildfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/signature.py to signature.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/imanm.py to imanm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/sampling.py to sampling.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/plotting.py to plotting.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/modeset.py to modeset.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/gnm.py to gnm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/anm.py to anm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/gamma.py to gamma.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/essa.py to essa.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/perturb.py to perturb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/adaptive.py to adaptive.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/entropy.py to entropy.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/exanm.py to exanm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/pca.py to pca.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/editing.py to editing.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/compare.py to compare.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/nma.py to nma.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/exgnm.py to exgnm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/rtb.py to rtb.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/mode.py to mode.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/clustenm.py to clustenm.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/analysis.py to analysis.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/plotting.py to plotting.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/sequence.py to sequence.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/msa.py to msa.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/msafile.py to msafile.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/functions.py to functions.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/ensemble.py to ensemble.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/conformation.py to conformation.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/kdtree.py to kdtree.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/contacts.py to contacts.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/transform.py to transform.cpython-311.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/measure.py to measure.cpython-311.pyc running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /<>/debian/python3-prody/usr/lib/python3.11/dist-packages/ProDy-2.4.1.egg-info Skipping SOURCES.txt running install_scripts Installing evol script to /<>/debian/python3-prody/usr/bin Installing prody script to /<>/debian/python3-prody/usr/bin I: pybuild base:305: /usr/bin/python3 setup.py install --root /<>/debian/python3-prody running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running install_lib creating /<>/debian/python3-prody/usr/lib/python3.12 creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_clustenm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_anm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_catdcd.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_contacts.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_pca.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/nmaoptions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_blast.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_select.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_fetch.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_energy.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_biomol.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_align.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_eda.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_gnm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_pca.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_eda.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_anm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_energy.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_fetch.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_biomol.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_catdcd.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_blast.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_align.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_select.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_gnm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_contacts.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_clustenm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/nmaoptions.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/apptools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/__pycache__/apptools.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_rankorder.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_fetch.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_filter.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_search.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_coevol.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_conserv.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_merge.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_refine.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__pycache__/evol_fetch.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__pycache__/evol_occupancy.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__pycache__/evol_conserv.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__pycache__/evol_search.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__pycache__/evol_merge.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__pycache__/evol_filter.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__pycache__/evol_coevol.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__pycache__/evol_rankorder.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/__pycache__/evol_refine.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_occupancy.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/straw.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/norm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__pycache__/functions.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__pycache__/hic.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__pycache__/norm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__pycache__/cluster.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/cluster.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin copying /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin/hic.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/goa.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/pfam.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/uniprot.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/quartataweb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/cath.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/__pycache__/pfam.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/__pycache__/uniprot.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/__pycache__/dali.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/__pycache__/goa.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/__pycache__/cath.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/__pycache__/quartataweb.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/database/dali.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/ccd.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/bird.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/__pycache__/ccd.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/__pycache__/pdbligands.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/__pycache__/bird.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/__pycache__/functions.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds/pdbligands.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/trajbase.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/dcdfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/trajfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/frame.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/psffile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/trajectory.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/trajbase.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/trajfile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/psffile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/frame.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/dcdfile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/trajectory.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/doctools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/seqtools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/drawtools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/pathtools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/misctools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/TreeConstruction.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/laptools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles/saxs_water.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles/mod_res_map.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/datafiles creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/laptools.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/logger.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/doctools.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/eigtools.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/catchall.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/checkers.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/misctools.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/seqtools.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/TreeConstruction.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/settings.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/__pycache__/pathtools.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/legacy.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/checkers.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/settings.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/eigtools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/catchall.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/logger.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition copying /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition copying /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition/spectrus.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition/__pycache__/spectrus.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/residue.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/angle.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/fields.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/segment.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/donor.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/hierview.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/acceptor.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/bond.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/atomgroup.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/crossterm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/atomic.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/atommap.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/pointer.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/nbexclusion.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/chain.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/subset.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/improper.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/atom.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/selection.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/dihedral.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/dihedral.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/atommap.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/atomic.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/residue.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/nbexclusion.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/flags.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/angle.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/donor.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/pointer.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/acceptor.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/fields.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/functions.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/bond.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/select.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/atomgroup.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/improper.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/segment.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/chain.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/subset.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/atom.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/hierview.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/crossterm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/selection.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/flags.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_pca.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_anm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_examples.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_catdcd.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_gnm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/__pycache__/test_prody_examples.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/__pycache__/test_prody_gnm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/__pycache__/test_prody_anm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/__pycache__/test_prody_catdcd.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/__pycache__/test_prody_pca.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory/test_dcdfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory/test_frame.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory/__pycache__/test_dcdfile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory/__pycache__/test_frame.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_checkers.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/__pycache__/test_checkers.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/__pycache__/test_misctools.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/__pycache__/test_pathtools.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_misctools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_pathtools.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_subset.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_select.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_atommap.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_hierview.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_atomic.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_fragment.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/__pycache__/test_select.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/__pycache__/test_subset.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/__pycache__/test_fragment.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/__pycache__/test_atomic.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/__pycache__/test_hierview.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/__pycache__/test_atommap.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_header.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_pdbfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_ciffile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_wwpdb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_localpdb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/__pycache__/test_wwpdb.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/__pycache__/test_localpdb.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/__pycache__/test_header.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/__pycache__/test_pdbfile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/__pycache__/test_ciffile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/__pycache__/test_dssp.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_dssp.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pca2k39_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/gnm1ubi_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/anm1ubi_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/rtb2gb1_project.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/exanm2nwl_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/gnm1ubi_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/exanm2nwl_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb2k39_ca.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/hit1ubi.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb3o21.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1r19_dssp.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/commute1ubi.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/dcd2k39_truncated.dcd -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot.slx -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb2nwl-opm.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot_di.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/rtb2gb1_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb3hsy.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb3mht.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1ejg.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/exanm2nwl_hessian.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pca2k39_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot.sth -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/mmcif_6zu5.cif -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot.fasta -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/xmlSTI.xml -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/mmcif_6yfy.cif -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pca2k39_cov.coo -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb2k39_truncated.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdbRTER.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb4v8r_hex.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1ubi.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/anm1ubi_evalues.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb4v8r_h36.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/anm1ubi_vectors.dat -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1ubi_ca.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb3p3w.pdb -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_pca.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_signature.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_editing.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_enms.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/__pycache__/test_pca.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/__pycache__/test_signature.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/__pycache__/test_enms.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/__pycache__/test_editing.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/test_msafile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/test_sequence.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/test_analysis.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/__pycache__/test_sequence.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/__pycache__/test_msafile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/__pycache__/test_analysis.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/__pycache__/test_msa.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/test_msa.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/test_conformation.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/test_ensemble.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/test_functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/test_pdbensemble.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/__pycache__/test_conformation.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/__pycache__/test_ensemble.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/__pycache__/test_pdbensemble.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/__pycache__/test_functions.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree/test_kdtree.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree/__pycache__/test_kdtree.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/test_transform.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/test_contacts.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/test_measure.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/__pycache__/test_measure.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/__pycache__/test_contacts.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure/__pycache__/test_transform.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/starfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/ccealign.cpython-312-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/fixer.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/blastpdb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/pdbfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/stride.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/emdfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/compare.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/wwpdb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/stride.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/wwpdb.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/starfile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/ciffile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/compare.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/functions.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/localpdb.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/pdbclusters.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/dssp.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/cifheader.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/emdfile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/blastpdb.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/header.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/waterbridges.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/fixer.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/__pycache__/pdbfile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/waterbridges.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/pdbclusters.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/cifheader.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/header.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/localpdb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/dssp.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins copying /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/ciffile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/vmdfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/bbenm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/analysis.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/smtools.cpython-312-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/bildfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/signature.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/imanm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/sampling.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/plotting.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/modeset.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/gnm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/anm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/mechstiff.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/gamma.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/essa.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/perturb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/adaptive.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/heatmapper.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/nmdfile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/entropy.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/exanm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/pca.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/editing.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/compare.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/rtbtools.cpython-312-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/nma.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/exgnm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/sampling.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/gnm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/analysis.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/vmdfile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/bildfile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/exanm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/compare.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/plotting.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/nma.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/functions.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/signature.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/adaptive.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/perturb.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/mode.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/clustenm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/heatmapper.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/mechstiff.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/nmdfile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/gamma.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/anm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/modeset.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/pca.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/essa.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/editing.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/entropy.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/rtb.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/__pycache__/imanm.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/exgnm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/rtb.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/mode.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics copying /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/clustenm.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/seqtools.cpython-312-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/analysis.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/plotting.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/sequence.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/__pycache__/analysis.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/__pycache__/plotting.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/__pycache__/sequence.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/__pycache__/msa.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/__pycache__/msafile.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msatools.cpython-312-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msa.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msaio.cpython-312-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence copying /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msafile.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/functions.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/ensemble.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/conformation.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/__pycache__/ensemble.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/__pycache__/functions.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/__pycache__/conformation.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/__pycache__/pdbensemble.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble/pdbensemble.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/_CKDTree.cpython-312-arm-linux-gnueabihf.so -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree copying /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/kdtree.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/__pycache__/kdtree.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/__pycache__ creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/__init__.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/contacts.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/transform.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure creating /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/__pycache__/measure.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/__pycache__/__init__.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/__pycache__/contacts.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/__pycache__/transform.cpython-312.pyc -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/__pycache__ copying /<>/.pybuild/cpython3_3.12_prody/build/prody/measure/measure.py -> /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/apptools.py to apptools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/straw.py to straw.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/norm.py to norm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/cluster.py to cluster.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/hic.py to hic.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/goa.py to goa.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/pfam.py to pfam.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/uniprot.py to uniprot.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/quartataweb.py to quartataweb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/cath.py to cath.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/dali.py to dali.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/ccd.py to ccd.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/bird.py to bird.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/pdbligands.py to pdbligands.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/trajbase.py to trajbase.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/trajfile.py to trajfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/frame.py to frame.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/psffile.py to psffile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/trajectory.py to trajectory.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/doctools.py to doctools.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/seqtools.py to seqtools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/drawtools.py to drawtools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/pathtools.py to pathtools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/misctools.py to misctools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/laptools.py to laptools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/legacy.py to legacy.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/checkers.py to checkers.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/settings.py to settings.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/eigtools.py to eigtools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/catchall.py to catchall.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/logger.py to logger.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/residue.py to residue.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/angle.py to angle.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/fields.py to fields.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/segment.py to segment.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/donor.py to donor.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/hierview.py to hierview.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/acceptor.py to acceptor.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/bond.py to bond.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atomgroup.py to atomgroup.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/crossterm.py to crossterm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atomic.py to atomic.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atommap.py to atommap.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/pointer.py to pointer.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/chain.py to chain.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/subset.py to subset.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/improper.py to improper.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atom.py to atom.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/selection.py to selection.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/dihedral.py to dihedral.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/select.py to select.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.12/dist-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/dist-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/flags.py to flags.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_select.py to test_select.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_header.py to test_header.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/test_transform.py to test_transform.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/test_measure.py to test_measure.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/starfile.py to starfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/fixer.py to fixer.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/blastpdb.py to blastpdb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/pdbfile.py to pdbfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/stride.py to stride.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/emdfile.py to emdfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/compare.py to compare.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/wwpdb.py to wwpdb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/waterbridges.py to waterbridges.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/cifheader.py to cifheader.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/header.py to header.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py to localpdb.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/dssp.py to dssp.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/ciffile.py to ciffile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/bbenm.py to bbenm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/analysis.py to analysis.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/bildfile.py to bildfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/signature.py to signature.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/imanm.py to imanm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/sampling.py to sampling.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/plotting.py to plotting.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/modeset.py to modeset.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/gnm.py to gnm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/anm.py to anm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/gamma.py to gamma.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/essa.py to essa.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/perturb.py to perturb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/adaptive.py to adaptive.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/entropy.py to entropy.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/exanm.py to exanm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/pca.py to pca.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/editing.py to editing.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/compare.py to compare.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/nma.py to nma.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/exgnm.py to exgnm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/rtb.py to rtb.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/mode.py to mode.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/clustenm.py to clustenm.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/analysis.py to analysis.cpython-312.pyc /usr/lib/python3.12/dist-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/plotting.py to plotting.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/sequence.py to sequence.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/msa.py to msa.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/msafile.py to msafile.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/ensemble.py to ensemble.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/conformation.py to conformation.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/kdtree.py to kdtree.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/contacts.py to contacts.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/transform.py to transform.cpython-312.pyc byte-compiling /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/measure.py to measure.cpython-312.pyc running install_egg_info running egg_info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /<>/debian/python3-prody/usr/lib/python3.12/dist-packages/ProDy-2.4.1.egg-info Skipping SOURCES.txt running install_scripts Installing evol script to /<>/debian/python3-prody/usr/bin Installing prody script to /<>/debian/python3-prody/usr/bin debian/rules override_dh_install make[1]: Entering directory '/<>' for VERSION in $(py3versions --supported); \ do \ mkdir --parents debian/python3-prody-tests/usr/lib/${VERSION}/dist-packages/prody; \ mv debian/python3-prody/usr/lib/${VERSION}/dist-packages/prody/tests debian/python3-prody-tests/usr/lib/${VERSION}/dist-packages/prody; \ done dh_install make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/proteins/ccealign.cpython-312-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f21 f9442ebc7a985556d07653de36911feb8c29ebd1 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/proteins/ccealign.cpython-311-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f21 eb69a2b68c768e945970bf03974af6b1b65a6a0c debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/dynamics/smtools.cpython-312-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f20 2d6cc5055796e7a0abbea39c37a7fada949fc42e debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/dynamics/smtools.cpython-311-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f20 5bf5990241feef4a4b05d17cd2775517f5aef60f debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/dynamics/rtbtools.cpython-312-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f20 9f28bf41a1d86bbee5a431bd34abc20811702ca2 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/dynamics/rtbtools.cpython-311-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f20 0813e70fde6d6cc758477178e09980a79f1c74e4 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/msatools.cpython-311-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f20 ef6a8fa7bb7aa2ebd20f3830dd986cecfcb97063 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/msaio.cpython-311-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f20 cdaaaabc2e4f051d86ff7ad03e62fe178eb59d05 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/seqtools.cpython-312-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f21 8182befca244d435f28ed78bfb063b086b7426c0 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/seqtools.cpython-311-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f21 16e16bad9e85605b7888a2d51c45921aaae37131 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/msatools.cpython-312-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f20 7bb5adfcd1d057c67f983f5d3624e49261b5f5f2 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/sequence/msaio.cpython-312-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f20 dee7fd2e8724ee6b5d995e5c51768a53c125cd96 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/kdtree/_CKDTree.cpython-311-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f21 9203ed6b63caa64c1ea7cffca7c35629cda68878 debugedit: debian/python3-prody/usr/lib/python3/dist-packages/prody/kdtree/_CKDTree.cpython-312-arm-linux-gnueabihf.so: Unknown DWARF DW_FORM_0x1f21 48425f80685281d7fc8d2ba2c304d8b5674c840a dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_numpy3 -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Provides field of package python3-prody: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-prody: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing python3-prody (in debian/python3-prody); do_strip: , oemstrip: pkgstriptranslations: processing python3-prody-dbgsym (in debian/.debhelper/python3-prody/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-prody/DEBIAN/control, package python3-prody, directory debian/python3-prody pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-prody ... pkgstripfiles: processing control file: debian/.debhelper/python3-prody/dbgsym-root/DEBIAN/control, package python3-prody-dbgsym, directory debian/.debhelper/python3-prody/dbgsym-root dpkg-deb: building package 'python3-prody-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-prody/python3-prody-dbgsym_2.4.1+dfsg-2_armhf.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-prody' in '../python3-prody_2.4.1+dfsg-2_armhf.deb'. Renaming python3-prody-dbgsym_2.4.1+dfsg-2_armhf.deb to python3-prody-dbgsym_2.4.1+dfsg-2_armhf.ddeb dpkg-genbuildinfo --build=any -O../prody_2.4.1+dfsg-2_armhf.buildinfo Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. Use of uninitialized value $value in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 389. dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../prody_2.4.1+dfsg-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-02-15T13:37:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ prody_2.4.1+dfsg-2_armhf.changes: --------------------------------- Format: 1.8 Date: Tue, 13 Feb 2024 02:16:27 -0500 Source: prody Binary: python3-prody Built-For-Profiles: noudeb Architecture: armhf Version: 2.4.1+dfsg-2 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andrius Merkys Description: python3-prody - Python package for protein dynamics analysis Closes: 1028722 Changes: prody (2.4.1+dfsg-2) unstable; urgency=medium . * Skip test with equals on a vector (Closes: #1028722). Thanks Santiago Vila. * Update manpages. Checksums-Sha1: b1a503a4ee52e879899cb37be7c9abdaa0ad4e1b 9038 prody_2.4.1+dfsg-2_armhf.buildinfo 2f16bc94f7337b1ca191281b4600e4336fee0590 329730 python3-prody-dbgsym_2.4.1+dfsg-2_armhf.ddeb 54b77fc0d42b9a983f25b0234105fd991900adc8 979030 python3-prody_2.4.1+dfsg-2_armhf.deb Checksums-Sha256: 96ccfcf5b4104ca0be2df82cbc083f0d268867ae32ce33e74f1e004a44031545 9038 prody_2.4.1+dfsg-2_armhf.buildinfo be135007c55b663e2bb37b7f78ff6117c0b74548ecca9d65ea5fd55e77606156 329730 python3-prody-dbgsym_2.4.1+dfsg-2_armhf.ddeb 4d5d95eeeee4416d50cc9a339f6363af4ecb5e9ee428bffb8c69acb075f27fe6 979030 python3-prody_2.4.1+dfsg-2_armhf.deb Files: 537d26c3d7fac0f1c1127658802ececc 9038 science optional prody_2.4.1+dfsg-2_armhf.buildinfo 364f2a1ce3812f60a3260eb062f98e10 329730 debug optional python3-prody-dbgsym_2.4.1+dfsg-2_armhf.ddeb 4659619a0aaf6973f7ffce091e023a38 979030 science optional python3-prody_2.4.1+dfsg-2_armhf.deb /<>/prody_2.4.1+dfsg-2_armhf.changes.new could not be renamed to /<>/prody_2.4.1+dfsg-2_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: prody Binary: python3-prody python3-prody-dbgsym Architecture: armhf Version: 2.4.1+dfsg-2 Checksums-Md5: 364f2a1ce3812f60a3260eb062f98e10 329730 python3-prody-dbgsym_2.4.1+dfsg-2_armhf.ddeb 4659619a0aaf6973f7ffce091e023a38 979030 python3-prody_2.4.1+dfsg-2_armhf.deb Checksums-Sha1: 2f16bc94f7337b1ca191281b4600e4336fee0590 329730 python3-prody-dbgsym_2.4.1+dfsg-2_armhf.ddeb 54b77fc0d42b9a983f25b0234105fd991900adc8 979030 python3-prody_2.4.1+dfsg-2_armhf.deb Checksums-Sha256: be135007c55b663e2bb37b7f78ff6117c0b74548ecca9d65ea5fd55e77606156 329730 python3-prody-dbgsym_2.4.1+dfsg-2_armhf.ddeb 4d5d95eeeee4416d50cc9a339f6363af4ecb5e9ee428bffb8c69acb075f27fe6 979030 python3-prody_2.4.1+dfsg-2_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Thu, 15 Feb 2024 13:37:05 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu6), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.42-2ubuntu1), binutils-arm-linux-gnueabihf (= 2.42-2ubuntu1), binutils-common (= 2.42-2ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.4-2ubuntu3), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-13ubuntu1), cpp-13-arm-linux-gnueabihf (= 13.2.0-13ubuntu1), cpp-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.86), debhelper (= 13.13ubuntu1), debianutils (= 5.16), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 6.20231223), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.4ubuntu2), dpkg-dev (= 1.22.4ubuntu2), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig-config (= 2.14.2-6ubuntu1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-extra (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-urw-base35 (= 20200910-7), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-13ubuntu1), g++-13-arm-linux-gnueabihf (= 13.2.0-13ubuntu1), g++-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-13ubuntu1), gcc-13-arm-linux-gnueabihf (= 13.2.0-13ubuntu1), gcc-13-base (= 13.2.0-13ubuntu1), gcc-14-base (= 14-20240201-3ubuntu1), gcc-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu1), gettext-base (= 0.21-14ubuntu1), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-4ubuntu1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240201-3ubuntu1), libatomic1 (= 14-20240201-3ubuntu1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2), libaudit1 (= 1:3.1.2-2), libbinutils (= 2.42-2ubuntu1), libblas3 (= 3.12.0-2), libblkid1 (= 2.39.2-6ubuntu1), libbrotli1 (= 1.1.0-2), libbsd0 (= 0.11.8-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.39-0ubuntu1), libc-dev-bin (= 2.39-0ubuntu1), libc6 (= 2.39-0ubuntu1), libc6-dev (= 2.39-0ubuntu1), libcairo2 (= 1.18.0-1), libcap-ng0 (= 0.8.4-1), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 14-20240201-3ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-2ubuntu1), libctf0 (= 2.42-2ubuntu1), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.13ubuntu1), libdeflate0 (= 1.19-1), libdpkg-perl (= 1.22.4ubuntu2), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libexpat1 (= 2.6.0-1), libexpat1-dev (= 2.6.0-1), libffi8 (= 3.4.4-2), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontconfig1 (= 2.14.2-6ubuntu1), libfontenc1 (= 1:1.1.4-1build3), libfreetype6 (= 2.13.2+dfsg-1), libfribidi0 (= 1.0.13-3), libgcc-13-dev (= 13.2.0-13ubuntu1), libgcc-s1 (= 14-20240201-3ubuntu1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgfortran5 (= 14-20240201-3ubuntu1), libglib2.0-0 (= 2.79.1-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgomp1 (= 14-20240201-3ubuntu1), libgpg-error0 (= 1.47-3build1), libgraphite2-3 (= 1.3.14-2), libgssapi-krb5-2 (= 1.20.1-5build1), libharfbuzz0b (= 8.3.0-2), libicu74 (= 74.2-1ubuntu1), libimagequant0 (= 2.18.0-1), libisl23 (= 0.26-3), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 7.2.6-3), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), liblapack3 (= 3.12.0-2), liblbfgsb0 (= 3.0+dfsg.4-1), liblcms2-2 (= 2.14-2), liblerc4 (= 4.0.0+ds-4ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.5-0.3), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-2), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20240113-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libopenjp2-7 (= 2.5.0-2), libpam-modules (= 1.5.2-9.1ubuntu2), libpam-modules-bin (= 1.5.2-9.1ubuntu2), libpam-runtime (= 1.5.2-9.1ubuntu2), libpam0g (= 1.5.2-9.1ubuntu2), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.38 (= 5.38.2-3), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpng16-16 (= 1.6.42-1), libpython3-all-dev (= 3.12.1-0ubuntu1), libpython3-dev (= 3.12.1-0ubuntu1), libpython3-stdlib (= 3.12.1-0ubuntu1), libpython3.11 (= 3.11.8-1), libpython3.11-dev (= 3.11.8-1), libpython3.11-minimal (= 3.11.8-1), libpython3.11-stdlib (= 3.11.8-1), libpython3.12 (= 3.12.2-1), libpython3.12-dev (= 3.12.2-1), libpython3.12-minimal (= 3.12.2-1), libpython3.12-stdlib (= 3.12.2-1), libraqm0 (= 0.10.1-1), libreadline8 (= 8.2-3), libseccomp2 (= 2.5.5-1ubuntu1), libselinux1 (= 3.5-2build1), libsframe1 (= 2.42-2ubuntu1), libsharpyuv0 (= 1.3.2-0.3), libsmartcols1 (= 2.39.2-6ubuntu1), libsqlite3-0 (= 3.45.1-1), libssl3 (= 3.0.10-1ubuntu4), libstdc++-13-dev (= 13.2.0-13ubuntu1), libstdc++6 (= 14-20240201-3ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.2-3ubuntu2), libtiff6 (= 4.5.1+git230720-3ubuntu1), libtinfo6 (= 6.4+20240113-1), libtirpc-common (= 1.3.4+ds-1build1), libtirpc-dev (= 1.3.4+ds-1build1), libtirpc3 (= 1.3.4+ds-1build1), libtool (= 2.4.7-7), libubsan1 (= 14-20240201-3ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255.2-3ubuntu2), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libwebp7 (= 1.3.2-0.3), libwebpdemux2 (= 1.3.2-0.3), libwebpmux3 (= 1.3.2-0.3), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxml2 (= 2.9.14+dfsg-1.3build3), libxrender1 (= 1:0.9.10-1.1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.0-7.7), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 46), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-3), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), netbase (= 6.4), patch (= 2.7.6-7build2), perl (= 5.38.2-3), perl-base (= 5.38.2-3), perl-modules-5.38 (= 5.38.2-3), po-debconf (= 1.0.21+nmu1), python3 (= 3.12.1-0ubuntu1), python3-all (= 3.12.1-0ubuntu1), python3-all-dev (= 3.12.1-0ubuntu1), python3-biopython (= 1.81+dfsg-3), python3-cairo (= 1.25.1-2), python3-chardet (= 5.2.0+dfsg-1), python3-decorator (= 5.1.1-5), python3-dev (= 3.12.1-0ubuntu1), python3-distutils (= 3.11.5-1), python3-freetype (= 2.4.0-1), python3-lib2to3 (= 3.11.5-1), python3-minimal (= 3.12.1-0ubuntu1), python3-numpy (= 1:1.24.2-2), python3-pil (= 10.2.0-1), python3-pkg-resources (= 68.1.2-2), python3-pyparsing (= 3.1.1-1), python3-reportlab (= 4.0.9-1), python3-rlpycairo (= 0.3.0-3), python3-scipy (= 1.10.1-10build1), python3-setuptools (= 68.1.2-2), python3-zombie-imp (= 0.0.2-2), python3.11 (= 3.11.8-1), python3.11-dev (= 3.11.8-1), python3.11-minimal (= 3.11.8-1), python3.12 (= 3.12.2-1), python3.12-dev (= 3.12.2-1), python3.12-minimal (= 3.12.2-1), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-2), sensible-utils (= 0.0.20), sgml-base (= 1.31), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.35+dfsg-3), tzdata (= 2024a-1ubuntu1), util-linux (= 2.39.2-6ubuntu1), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+23ubuntu2), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xml-core (= 0.19), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1707808587" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-prody_2.4.1+dfsg-2_armhf.deb ------------------------------------ new Debian package, version 2.0. size 979030 bytes: control archive=5843 bytes. 1033 bytes, 18 lines control 17200 bytes, 184 lines md5sums 273 bytes, 12 lines * postinst #!/bin/sh 386 bytes, 12 lines * prerm #!/bin/sh Package: python3-prody Source: prody Version: 2.4.1+dfsg-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 3908 Depends: python3 (<< 3.13), python3 (>= 3.11~), python3-biopython, python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3-pkg-resources, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.35), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1) Section: science Priority: optional Homepage: https://github.com/prody/ProDy Description: Python package for protein dynamics analysis ProDy is a free and open-source Python package for protein structure, dynamics, and sequence analysis. It allows for comparative analysis and modeling of protein structural dynamics and sequence co-evolution. Fast and flexible ProDy API is for interactive usage as well as application development. 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2.4.1+dfsg-2 -------------------------------------------------------------------------------- Finished at 2024-02-15T13:37:06Z Build needed 00:28:11, 512904k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-27776639 Scanning for processes to kill in build PACKAGEBUILD-27776639