Ubuntu
prodigal package

prodigal 1:2.6.2-2 source package in Ubuntu

Changelog

prodigal (1:2.6.2-2) unstable; urgency=medium

  [ Michael R. Crusoe ]
  * New upstream version

  [ Andreas Tille ]
  * cme fix dpkg-control

 -- Andreas Tille <email address hidden>  Sat, 11 Jul 2015 18:56:23 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Xenial release universe misc

Downloads

File Size SHA-256 Checksum
prodigal_2.6.2-2.dsc 1.9 KiB 3b706a6a9d1dbd42e8becde6d5e85e9ff243abe4bcf75d0e5650c9d6fe16c4fd
prodigal_2.6.2.orig.tar.gz 596.6 KiB 0409e95dc9fd8df57aff0fe6c9da6895dab5b5a90a28fb2fcdbd52f31c581a55
prodigal_2.6.2-2.debian.tar.xz 3.9 KiB 671a8b414cbfe1efab00b788fb9177a6401068fcebb40d9e718f3305325180a9

Available diffs

No changes file available.

Binary packages built by this source

prodigal: No summary available for prodigal in ubuntu wily.

No description available for prodigal in ubuntu wily.

prodigal-dbgsym: debug symbols for package prodigal

 Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a
 microbial (bacterial and archaeal) gene finding program developed at
 Oak Ridge National Laboratory and the University of Tennessee.
 Key features of Prodigal include:
 .
 Speed: Prodigal is an extremely fast gene recognition tool
 (written in very vanilla C). It can analyze an entire microbial genome
 in 30 seconds or less.
 .
 Accuracy: Prodigal is a highly accurate gene finder.
 It correctly locates the 3' end of every gene in the experimentally verified
 Ecogene data set (except those containing introns).
 It possesses a very sophisticated ribosomal binding site scoring system that
 enables it to locate the translation initiation site with great accuracy
 (96% of the 5' ends in the Ecogene data set are located correctly).
 .
 Specificity: Prodigal's false positive rate compares favorably with other
 gene identification programs, and usually falls under 5%.
 .
 GC-Content Indifferent: Prodigal performs well even in high GC genomes,
 with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated
 annotations.
 .
 Metagenomic Version: Prodigal can run in metagenomic mode and analyze
 sequences even when the organism is unknown.
 .
 Ease of Use: Prodigal can be run in one step on a single genomic sequence
 or on a draft genome containing many sequences. It does not need to be
 supplied with any knowledge of the organism, as it learns all the properties
 it needs to on its own.