RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-018 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:28:18 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 3 Nov 00:40:11 ntpdate[1796]: adjust time server 10.211.37.1 offset -0.000519 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13660575 /home/buildd/filecache-default/b6762bcd0bec7d108ffb0fb3fb0b7d1ce32df8bb Creating target for build PACKAGEBUILD-13660575 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13660575 Starting target for build PACKAGEBUILD-13660575 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13660575 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13660575 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13660575 Updating target for build PACKAGEBUILD-13660575 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main i386 Packages [1061 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [541 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe i386 Packages [8090 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4797 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 Packages [119 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [69.3 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe i386 Packages [444 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [416 kB] Fetched 16.0 MB in 5s (2672 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: apt-transport-https* The following packages will be upgraded: apt base-files base-passwd binutils binutils-common binutils-i686-linux-gnu build-essential coreutils cpp-7 debconf dpkg dpkg-dev e2fslibs e2fsprogs g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdpkg-perl libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmpx2 libnettle6 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libsystemd0 libubsan0 libudev1 linux-libc-dev multiarch-support perl perl-base perl-modules-5.26 pinentry-curses systemd systemd-sysv sysvinit-utils tzdata 78 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. Need to get 58.5 MB of archives. After this operation, 699 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main i386 base-files i386 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main i386 coreutils i386 8.26-3ubuntu4 [1283 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main i386 dpkg i386 1.19.0.4ubuntu1 [1166 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main i386 libc6-dev i386 2.26-0ubuntu2 [2144 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main i386 libc-dev-bin i386 2.26-0ubuntu2 [67.0 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main i386 linux-libc-dev i386 4.13.0-16.19 [954 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main i386 libquadmath0 i386 7.2.0-12ubuntu1 [204 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main i386 libitm1 i386 7.2.0-12ubuntu1 [30.3 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main i386 gcc-7-base i386 7.2.0-12ubuntu1 [18.3 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main i386 libgcc1 i386 1:7.2.0-12ubuntu1 [47.0 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main i386 libmpx2 i386 7.2.0-12ubuntu1 [13.0 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main i386 libgomp1 i386 7.2.0-12ubuntu1 [80.3 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main i386 libatomic1 i386 7.2.0-12ubuntu1 [9696 B] Get:14 http://ftpmaster.internal/ubuntu bionic/main i386 libasan4 i386 7.2.0-12ubuntu1 [361 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main i386 libubsan0 i386 7.2.0-12ubuntu1 [141 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main i386 libcilkrts5 i386 7.2.0-12ubuntu1 [47.3 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main i386 cpp-7 i386 7.2.0-12ubuntu1 [6959 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main i386 libcc1-0 i386 7.2.0-12ubuntu1 [41.4 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main i386 g++-7 i386 7.2.0-12ubuntu1 [7800 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main i386 gcc-7 i386 7.2.0-12ubuntu1 [7663 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main i386 libgcc-7-dev i386 7.2.0-12ubuntu1 [2396 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main i386 libstdc++-7-dev i386 7.2.0-12ubuntu1 [1500 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main i386 libstdc++6 i386 7.2.0-12ubuntu1 [437 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libgmp10 i386 2:6.1.2+dfsg-1.1 [246 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main i386 libbinutils i386 2.29.1-6ubuntu1 [551 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main i386 binutils i386 2.29.1-6ubuntu1 [3346 B] Get:27 http://ftpmaster.internal/ubuntu bionic/main i386 binutils-common i386 2.29.1-6ubuntu1 [190 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main i386 binutils-i686-linux-gnu i386 2.29.1-6ubuntu1 [1997 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main i386 libc6 i386 2.26-0ubuntu2 [2544 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 e2fslibs i386 1.43.7-1 [184 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 e2fsprogs i386 1.43.7-1 [535 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 perl-modules-5.26 all 5.26.1-2ubuntu1 [2760 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libperl5.26 i386 5.26.1-2ubuntu1 [3148 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 perl i386 5.26.1-2ubuntu1 [201 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 perl-base i386 5.26.1-2ubuntu1 [1493 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main i386 base-passwd i386 3.5.44 [47.8 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main i386 libc-bin i386 2.26-0ubuntu2 [569 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 sysvinit-utils i386 2.88dsf-59.10ubuntu1 [19.3 kB] Get:39 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libudev1 i386 235-2ubuntu1 [57.9 kB] Get:40 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libapt-pkg5.0 i386 1.6~alpha3 [848 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libgpg-error0 i386 1.27-4 [40.2 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main i386 libgcrypt20 i386 1.7.9-1 [375 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main i386 gpgv i386 2.1.15-1ubuntu8 [206 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main i386 libseccomp2 i386 2.3.1-2.1ubuntu3 [35.4 kB] Get:45 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 apt i386 1.6~alpha3 [1169 kB] Get:46 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 debconf all 1.5.64 [124 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libapparmor1 i386 2.11.0-2ubuntu18 [30.3 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main i386 libcap2 i386 1:2.25-1.1 [13.6 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main i386 libpcre3 i386 2:8.39-5ubuntu3 [228 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libselinux1 i386 2.7-2 [73.0 kB] Get:51 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 systemd i386 235-2ubuntu1 [2927 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libsystemd0 i386 235-2ubuntu1 [213 kB] Get:53 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 systemd-sysv i386 235-2ubuntu1 [12.7 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libcap-ng0 i386 0.7.7-3.1 [11.2 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libcomerr2 i386 1.43.7-1 [11.7 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main i386 libsemanage-common all 2.7-2 [6916 B] Get:57 http://ftpmaster.internal/ubuntu bionic/main i386 libsemanage1 i386 2.7-2 [93.4 kB] Get:58 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libss2 i386 1.43.7-1 [11.6 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main i386 libnettle6 i386 3.3-2 [109 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main i386 libhogweed4 i386 3.3-2 [137 kB] Get:61 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http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libk5crypto3 i386 1.15.2-2 [89.5 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main i386 libkeyutils1 i386 1.5.9-9.1ubuntu1 [9736 B] Get:73 http://ftpmaster.internal/ubuntu bionic/main i386 libpng16-16 i386 1.6.34-1 [183 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main i386 dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main i386 libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main i386 build-essential i386 12.4ubuntu1 [4752 B] Get:77 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libpsl5 i386 0.18.0-4 [41.4 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main i386 libcurl3-gnutls i386 7.55.1-1ubuntu2.1 [214 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.5 MB in 1s (37.6 MB/s) (Reading database ... 12671 files and directories currently installed.) 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Setting up libcc1-0:i386 (7.2.0-12ubuntu1) ... Setting up libasan4:i386 (7.2.0-12ubuntu1) ... Setting up libpng16-16:i386 (1.6.34-1) ... Setting up libcilkrts5:i386 (7.2.0-12ubuntu1) ... Setting up libpsl5:i386 (0.18.0-4) ... Setting up multiarch-support (2.26-0ubuntu2) ... Setting up tzdata (2017c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 3 00:40:55 UTC 2017. Universal Time is now: Fri Nov 3 00:40:55 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (235-2ubuntu1) ... Setting up libubsan0:i386 (7.2.0-12ubuntu1) ... Setting up linux-libc-dev:i386 (4.13.0-16.19) ... Setting up perl-modules-5.26 (5.26.1-2ubuntu1) ... Setting up libkrb5support0:i386 (1.15.2-2) ... Setting up cpp-7 (7.2.0-12ubuntu1) ... Setting up binutils-common:i386 (2.29.1-6ubuntu1) ... Setting up libmpx2:i386 (7.2.0-12ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libperl5.26:i386 (5.26.1-2ubuntu1) ... 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Setting up libcurl3-gnutls:i386 (7.55.1-1ubuntu2.1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13660575 i386 bionic-proposed -c chroot:build-PACKAGEBUILD-13660575 --arch=i386 --dist=bionic-proposed --nolog plastimatch_1.6.6+dfsg.1-1.dsc Initiating build PACKAGEBUILD-13660575 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:28:18 UTC 2017 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-018.buildd +==============================================================================+ | plastimatch 1.6.6+dfsg.1-1 (i386) 03 Nov 2017 00:40 | +==============================================================================+ Package: plastimatch Version: 1.6.6+dfsg.1-1 Source Version: 1.6.6+dfsg.1-1 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/plastimatch-iwAL5g/plastimatch-1.6.6+dfsg.1' with '<>' I: NOTICE: Log filtering will replace 'build/plastimatch-iwAL5g' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13660575/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- plastimatch_1.6.6+dfsg.1-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-jFc_VO/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-jFc_VO/apt_archive ./ InRelease Get:2 copy:/<>/resolver-jFc_VO/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-jFc_VO/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-jFc_VO/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-jFc_VO/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (154 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-jFc_VO/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12666 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), cmake, libblas-dev, libdcmtk-dev, libdlib-dev, libfftw3-dev, libgdcm2-dev, libinsighttoolkit4-dev, liblapack-dev, libpng-dev, libsqlite3-dev, libtiff-dev, uuid-dev, zlib1g-dev Filtered Build-Depends: debhelper (>= 10), cmake, libblas-dev, libdcmtk-dev, libdlib-dev, libfftw3-dev, libgdcm2-dev, libinsighttoolkit4-dev, liblapack-dev, libpng-dev, libsqlite3-dev, libtiff-dev, uuid-dev, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-plastimatch-dummy' in '/<>/resolver-uXy_lu/apt_archive/sbuild-build-depends-plastimatch-dummy.deb'. Ign:1 copy:/<>/resolver-uXy_lu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uXy_lu/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-uXy_lu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uXy_lu/apt_archive ./ Sources [287 B] Get:5 copy:/<>/resolver-uXy_lu/apt_archive ./ Packages [607 B] Fetched 3013 B in 0s (166 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install plastimatch build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libcurl3-gnutls libustr-1.0-1 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas-dev libblas3 libbsd0 libcharls-dev libcharls1 libcroco3 libcurl3 libdcmtk-dev libdcmtk12 libdlib-data libdlib-dev libdlib18 libdouble-conversion-dev libdouble-conversion1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libgdcm2-dev libgdcm2.8 libgfortran4 libglib2.0-0 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu-dev libicu59 libinsighttoolkit4-dev libinsighttoolkit4.12 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjson-c3 libjsoncpp1 liblapack-dev liblapack3 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libnifti-dev libnifti2 libopenjp2-7 libpipeline1 libpng-dev librhash0 libsigsegv2 libsocket++1 libsqlite3-dev libssl-dev libsz2 libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtool libuv1 libwrap0 libwrap0-dev libxml2 libxml2-dev m4 man-db po-debconf uuid-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation ninja-build dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip liblapack-doc dcmtk-doc libfftw3-doc libhdf5-doc icu-doc insighttoolkit4-examples liblzma-doc sqlite3-doc libtool-doc gfortran | fortran95-compiler gcj-jdk pkg-config m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libpng-tools libssl-doc libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas-dev libblas3 libbsd0 libcharls-dev libcharls1 libcroco3 libcurl3 libdcmtk-dev libdcmtk12 libdlib-data libdlib-dev libdlib18 libdouble-conversion-dev libdouble-conversion1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libgdcm2-dev libgdcm2.8 libgfortran4 libglib2.0-0 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu-dev libicu59 libinsighttoolkit4-dev libinsighttoolkit4.12 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjson-c3 libjsoncpp1 liblapack-dev liblapack3 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libnifti-dev libnifti2 libopenjp2-7 libpipeline1 libpng-dev librhash0 libsigsegv2 libsocket++1 libsqlite3-dev libssl-dev libsz2 libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtool libuv1 libwrap0 libwrap0-dev libxml2 libxml2-dev m4 man-db po-debconf sbuild-build-depends-plastimatch-dummy uuid-dev zlib1g-dev 0 upgraded, 97 newly installed, 1 to remove and 0 not upgraded. Need to get 132 MB of archives. After this operation, 431 MB of additional disk space will be used. Get:1 copy:/<>/resolver-uXy_lu/apt_archive ./ sbuild-build-depends-plastimatch-dummy 0.invalid.0 [936 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main i386 groff-base i386 1.22.3-9 [1163 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libbsd0 i386 0.8.6-2 [45.0 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main i386 bsdmainutils i386 9.0.12+nmu1ubuntu1 [181 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main i386 libpipeline1 i386 1.4.2-1 [26.8 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main i386 man-db i386 2.7.6.1-2 [906 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main i386 cmake-data all 3.9.3-1 [1268 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main i386 liblzo2-2 i386 2.08-1.2 [52.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main i386 libicu59 i386 59.1-3ubuntu1 [7948 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main i386 libxml2 i386 2.9.4+dfsg1-5ubuntu1 [703 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main i386 libarchive13 i386 3.2.2-3.1 [328 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main i386 libcurl3 i386 7.55.1-1ubuntu2.1 [217 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main i386 libexpat1 i386 2.2.3-1 [75.1 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main i386 libjsoncpp1 i386 1.7.4-3 [82.7 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main i386 librhash0 i386 1.3.4-3 [88.7 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main i386 libuv1 i386 1.9.1-3 [64.0 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main i386 cmake i386 3.9.3-1 [3403 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main i386 libjpeg-turbo8 i386 1.5.2-0ubuntu5 [118 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main i386 libjbig0 i386 2.1-3.1 [27.0 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main i386 libmagic-mgc i386 1:5.32-1 [184 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main i386 libmagic1 i386 1:5.32-1 [75.0 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main i386 file i386 1:5.32-1 [21.9 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main i386 libglib2.0-0 i386 2.54.1-1ubuntu1 [1231 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main i386 libjson-c3 i386 0.12.1-1.2 [23.3 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main i386 gettext-base i386 0.19.8.1-4ubuntu1 [50.7 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main i386 libsigsegv2 i386 2.11-1 [13.5 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main i386 m4 i386 1.4.18-1 [196 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main i386 autoconf all 2.69-11 [322 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main i386 autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main i386 automake all 1:1.15.1-3ubuntu1 [509 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main i386 autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main i386 libtool all 2.4.6-2 [194 kB] Get:33 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Get:53 http://ftpmaster.internal/ubuntu bionic/main i386 libssl-dev i386 1.0.2g-1ubuntu13 [1129 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main i386 libpng-dev i386 1.6.34-1 [186 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libwrap0 i386 7.6.q-27 [47.2 kB] Get:56 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libwrap0-dev i386 7.6.q-27 [23.2 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main i386 libjbig-dev i386 2.1-3.1 [24.1 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main i386 libjpeg-turbo8-dev i386 1.5.2-0ubuntu5 [243 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main i386 libjpeg8 i386 8c-2ubuntu8 [2188 B] Get:60 http://ftpmaster.internal/ubuntu bionic/main i386 libjpeg8-dev i386 8c-2ubuntu8 [1546 B] Get:61 http://ftpmaster.internal/ubuntu bionic/main i386 libjpeg-dev i386 8c-2ubuntu8 [1544 B] Get:62 http://ftpmaster.internal/ubuntu bionic/main i386 liblzma-dev i386 5.2.2-1.3 [154 kB] Get:63 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bionic-proposed/main i386 libfftw3-long3 i386 3.3.6p2-2 [313 kB] Get:74 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libfftw3-quad3 i386 3.3.6p2-2 [1748 kB] Get:75 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libfftw3-single3 i386 3.3.6p2-2 [646 kB] Get:76 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libfftw3-bin i386 3.3.6p2-2 [35.9 kB] Get:77 http://ftpmaster.internal/ubuntu bionic-proposed/main i386 libfftw3-dev i386 3.3.6p2-2 [3119 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/universe i386 libopenjp2-7 i386 2.2.0-1 [142 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/universe i386 libsocket++1 i386 1.12.13-8wily1 [39.9 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/universe i386 libgdcm2.8 i386 2.8.2-3build1 [1857 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/universe i386 libgdcm2-dev i386 2.8.2-3build1 [253 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main i386 libgfortran4 i386 7.2.0-12ubuntu1 [473 kB] Get:83 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i386 libnifti-dev i386 2.0.0-2 [126 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/universe i386 libinsighttoolkit4-dev i386 4.12.2-dfsg1-1ubuntu1 [2894 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main i386 liblapack3 i386 3.7.1-3ubuntu2 [1917 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main i386 liblapack-dev i386 3.7.1-3ubuntu2 [1975 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main i386 libsqlite3-dev i386 3.20.1-2 [656 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main i386 uuid-dev i386 2.30.1-0ubuntu4 [27.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 MB in 4s (26.5 MB/s) (Reading database ... 12666 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... 12657 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_i386.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../01-libbsd0_0.8.6-2_i386.deb ... Unpacking libbsd0:i386 (0.8.6-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12+nmu1ubuntu1_i386.deb ... Unpacking bsdmainutils (9.0.12+nmu1ubuntu1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.4.2-1_i386.deb ... Unpacking libpipeline1:i386 (1.4.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-2_i386.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../05-cmake-data_3.9.3-1_all.deb ... 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Setting up libgfortran4:i386 (7.2.0-12ubuntu1) ... Setting up libsqlite3-dev:i386 (3.20.1-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libjbig0:i386 (2.1-3.1) ... Setting up libsigsegv2:i386 (2.11-1) ... Setting up libcurl3:i386 (7.55.1-1ubuntu2.1) ... Setting up libuv1:i386 (1.9.1-3) ... Setting up libicu59:i386 (59.1-3ubuntu1) ... Setting up libjson-c3:i386 (0.12.1-1.2) ... Setting up libcharls1:i386 (1.1.0+dfsg-2) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:i386 (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up uuid-dev:i386 (2.30.1-0ubuntu4) ... Setting up libsocket++1:i386 (1.12.13-8wily1) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up cmake-data (3.9.3-1) ... Setting up libjpeg-turbo8:i386 (1.5.2-0ubuntu5) ... Setting up libpipeline1:i386 (1.4.2-1) ... Setting up m4 (1.4.18-1) ... Setting up libfftw3-double3:i386 (3.3.6p2-2) ... Setting up libbsd0:i386 (0.8.6-2) ... Setting up libxml2:i386 (2.9.4+dfsg1-5ubuntu1) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:i386 (1:5.32-1) ... Setting up librhash0 (1.3.4-3) ... Setting up libjbig-dev:i386 (2.1-3.1) ... Setting up libcroco3:i386 (0.6.12-1) ... Setting up libnifti-dev (2.0.0-2) ... Setting up libfftw3-quad3:i386 (3.3.6p2-2) ... Setting up libblas3:i386 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg-turbo8-dev:i386 (1.5.2-0ubuntu5) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up libgdcm2.8:i386 (2.8.2-3build1) ... Setting up libcharls-dev:i386 (1.1.0+dfsg-2) ... Setting up libexpat1-dev:i386 (2.2.3-1) ... Setting up libfftw3-single3:i386 (3.3.6p2-2) ... Setting up icu-devtools (59.1-3ubuntu1) ... Setting up liblzma-dev:i386 (5.2.2-1.3) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libfftw3-long3:i386 (3.3.6p2-2) ... Setting up hdf5-helpers (1.10.0-patch1+docs-4) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up liblzo2-2:i386 (2.08-1.2) ... Setting up libwrap0:i386 (7.6.q-27) ... Setting up libsz2:i386 (0.3.2-2) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libjsoncpp1:i386 (1.7.4-3) ... Setting up libfftw3-bin (3.3.6p2-2) ... Setting up libdouble-conversion-dev:i386 (2.0.1-4ubuntu1) ... Setting up libhdf5-100:i386 (1.10.0-patch1+docs-4) ... Setting up libwrap0-dev:i386 (7.6.q-27) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libblas-dev:i386 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libarchive13:i386 (3.2.2-3.1) ... Setting up libssl-dev:i386 (1.0.2g-1ubuntu13) ... Setting up liblapack3:i386 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libaec-dev:i386 (0.3.2-2) ... Setting up libtiff5:i386 (4.0.8-6) ... Setting up autoconf (2.69-11) ... Setting up libicu-dev (59.1-3ubuntu1) ... Setting up libgdcm2-dev (2.8.2-3build1) ... Setting up file (1:5.32-1) ... Setting up libdlib18 (18.18-2build1) ... Setting up libxml2-dev:i386 (2.9.4+dfsg1-5ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:i386 (8c-2ubuntu8) ... Setting up libjpeg-dev:i386 (8c-2ubuntu8) ... Setting up libfftw3-dev:i386 (3.3.6p2-2) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libdcmtk12 (3.6.2-3) ... Setting up libtiffxx5:i386 (4.0.8-6) ... Setting up libdlib-dev (18.18-2build1) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpng-dev:i386 (1.6.34-1) ... Setting up cmake (3.9.3-1) ... Setting up liblapack-dev:i386 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libtool (2.4.6-2) ... Setting up libhdf5-cpp-100:i386 (1.10.0-patch1+docs-4) ... Setting up po-debconf (1.0.20) ... Setting up libinsighttoolkit4.12 (4.12.2-dfsg1-1ubuntu1) ... Setting up libtiff5-dev:i386 (4.0.8-6) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libdcmtk-dev (3.6.2-3) ... Setting up libinsighttoolkit4-dev (4.12.2-dfsg1-1ubuntu1) ... Setting up dh-autoreconf (14) ... Setting up debhelper (10.10.5ubuntu1) ... Setting up sbuild-build-depends-plastimatch-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.040-1) ... (Reading database ... 24473 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-97-generic amd64 (i686) Toolchain package versions: binutils_2.29.1-6ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-12ubuntu1 gcc-7_7.2.0-12ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha3 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-6ubuntu1 binutils-common_2.29.1-6ubuntu1 binutils-i686-linux-gnu_2.29.1-6ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 cmake_3.9.3-1 cmake-data_3.9.3-1 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-12ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.64 debhelper_10.10.5ubuntu1 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.1-0ubuntu4 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-12ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-12ubuntu1 gcc-7-base_7.2.0-12ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hdf5-helpers_1.10.0-patch1+docs-4 hostname_3.18 icu-devtools_59.1-3ubuntu1 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libaec-dev_0.3.2-2 libaec0_0.3.2-2 libapparmor1_2.11.0-2ubuntu18 libapt-pkg5.0_1.6~alpha3 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-3.1 libasan4_7.2.0-12ubuntu1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.3-3 libatomic1_7.2.0-12ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libbinutils_2.29.1-6ubuntu1 libblas-dev_3.7.1-3ubuntu2 libblas3_3.7.1-3ubuntu2 libblkid1_2.30.1-0ubuntu4 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.1 libcc1-0_7.2.0-12ubuntu1 libcharls-dev_1.1.0+dfsg-2 libcharls1_1.1.0+dfsg-2 libcilkrts5_7.2.0-12ubuntu1 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcurl3_7.55.1-1ubuntu2.1 libcurl3-gnutls_7.55.1-1ubuntu2.1 libdb5.3_5.3.28-13.1 libdcmtk-dev_3.6.2-3 libdcmtk12_3.6.2-3 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdlib-data_18.18-2build1 libdlib-dev_18.18-2build1 libdlib18_18.18-2build1 libdouble-conversion-dev_2.0.1-4ubuntu1 libdouble-conversion1_2.0.1-4ubuntu1 libdpkg-perl_1.19.0.4ubuntu1 libexpat1_2.2.3-1 libexpat1-dev_2.2.3-1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.1-0ubuntu4 libffi6_3.2.1-6 libfftw3-bin_3.3.6p2-2 libfftw3-dev_3.3.6p2-2 libfftw3-double3_3.3.6p2-2 libfftw3-long3_3.3.6p2-2 libfftw3-quad3_3.3.6p2-2 libfftw3-single3_3.3.6p2-2 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-12ubuntu1 libgcc1_1:7.2.0-12ubuntu1 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libgdcm2-dev_2.8.2-3build1 libgdcm2.8_2.8.2-3build1 libgfortran4_7.2.0-12ubuntu1 libglib2.0-0_2.54.1-1ubuntu1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-12ubuntu1 libgpg-error0_1.27-4 libgssapi-krb5-2_1.15.2-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libhdf5-100_1.10.0-patch1+docs-4 libhdf5-cpp-100_1.10.0-patch1+docs-4 libhdf5-dev_1.10.0-patch1+docs-4 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhx509-5-heimdal_7.4.0.dfsg.1-2 libicu-dev_59.1-3ubuntu1 libicu59_59.1-3ubuntu1 libidn11_1.33-2 libidn2-0_2.0.2-5 libinsighttoolkit4-dev_4.12.2-dfsg1-1ubuntu1 libinsighttoolkit4.12_4.12.2-dfsg1-1ubuntu1 libip4tc0_1.6.1-2ubuntu1 libisl15_0.18-1 libitm1_7.2.0-12ubuntu1 libjbig-dev_2.1-3.1 libjbig0_2.1-3.1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_1.5.2-0ubuntu5 libjpeg-turbo8-dev_1.5.2-0ubuntu5 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c3_0.12.1-1.2 libjsoncpp1_1.7.4-3 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.1ubuntu1 libkmod2_24-1ubuntu2 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 liblapack-dev_3.7.1-3ubuntu2 liblapack3_3.7.1-3ubuntu2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.1-0ubuntu4 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libsqlite3-dev_3.20.1-2 libss2_1.43.7-1 libssl-dev_1.0.2g-1ubuntu13 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 libsystemd0_235-2ubuntu1 libsz2_0.3.2-2 libtasn1-6_4.12-2.1 libtiff5_4.0.8-6 libtiff5-dev_4.0.8-6 libtiffxx5_4.0.8-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_7.2.0-12ubuntu1 libudev1_235-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.1-0ubuntu4 libuv1_1.9.1-3 libwind0-heimdal_7.4.0.dfsg.1-2 libwrap0_7.6.q-27 libwrap0-dev_7.6.q-27 libxml2_2.9.4+dfsg1-5ubuntu1 libxml2-dev_2.9.4+dfsg1-5ubuntu1 linux-libc-dev_4.13.0-16.19 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.30.1-0ubuntu4 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-2ubuntu1 perl-base_5.26.1-2ubuntu1 perl-modules-5.26_5.26.1-2ubuntu1 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-plastimatch-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_235-2ubuntu1 systemd-sysv_235-2ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 util-linux_2.30.1-0ubuntu4 uuid-dev_2.30.1-0ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Oct 11 20:01:36 2017 UTC gpgv: using RSA key gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./plastimatch_1.6.6+dfsg.1-1.dsc dpkg-source: info: extracting plastimatch in plastimatch-1.6.6+dfsg.1 dpkg-source: info: unpacking plastimatch_1.6.6+dfsg.1.orig.tar.gz dpkg-source: info: unpacking plastimatch_1.6.6+dfsg.1-1.debian.tar.xz dpkg-source: info: applying 0001-Missing-lconv-in-CMakeLists.patch dpkg-source: info: applying 0002-Suppress-failing-proton-dose-testcase.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13660575 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13660575 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13660575 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package plastimatch dpkg-buildpackage: info: source version 1.6.6+dfsg.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build plastimatch-1.6.6+dfsg.1 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1' dh_auto_configure -- -DCMAKE_PREFIX_PATH=/usr/lib/InsightToolkit -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_SKIP_RPATH:BOOL=ON -DPLM_CONFIG_DEBIAN_BUILD:BOOL=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING:BOOL=ON cd obj-i686-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_PREFIX_PATH=/usr/lib/InsightToolkit -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_SKIP_RPATH:BOOL=ON -DPLM_CONFIG_DEBIAN_BUILD:BOOL=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING:BOOL=ON -- The C compiler identification is GNU 7.2.0 -- The CXX compiler identification is GNU 7.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned int -- Check size of unsigned int - done -- Check size of unsigned long -- Check size of unsigned long - done -- Check size of size_t -- Check size of size_t - done -- Machine is 32-bit -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Checking host processor: i686 -- Checking target processor: i686 -- Checking epsilon: 2.22045E-16 2.22045E-16 2.22045E-16 -- Checking sign of char: char is signed -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so -- Looking for ZLIB - found -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") -- Found PNG: /usr/lib/i386-linux-gnu/libpng.so (found version "1.6.34") -- Looking for PNG - found -- Found TIFF: /usr/lib/i386-linux-gnu/libtiff.so (found version "4.0.8") -- Looking for TIFF - found -- Looking for SSL - found: /usr/lib/i386-linux-gnu/libssl.so -- DCMTK may have been built with libwrap -- DCMTK version 3.6.2 -- Etags targets added. -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could NOT find Kaze (missing: KAZE_LIBRARY KAZE_INCLUDE_DIR) -- Could NOT find LIBLBFGS (missing: LIBLBFGS_LIBRARY LIBLBFGS_INCLUDE_DIR) -- Could NOT find NLOPT (missing: NLOPT_LIBRARY NLOPT_INCLUDE_DIR) -- Could NOT find OpenCL (missing: OPENCL_LIBRARIES OPENCL_INCLUDE_DIRS) -- Check for compiler OpenMP support... -- Looking for omp_get_thread_num -- Looking for omp_get_thread_num - found -- OpenMP flags "-fopenmp", OpenMP libraries "" -- SSE2_FLAGS "-msse2 -mfpmath=sse" -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test TR1_SHARED_PTR_USE_TR1_MEMORY -- Performing Test TR1_SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test TR1_SHARED_PTR_USE_MEMORY -- Performing Test TR1_SHARED_PTR_USE_MEMORY - Failed -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) CMake Warning (dev) at /usr/share/cmake-3.9/Modules/FindCUDA.cmake:497 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "GNU" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): cmake/FindCUDA_wrap.cmake:27 (find_package) CMakeLists.txt:427 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- CUDA Build Level: ALL Compute Capabilities -- >> Generation 1: [ ] -- >> Generation 2: [ ] -- >> Generation 3: [ ] -- >> Generation 5: [ ] -- Could NOT find THRUST (missing: THRUST_INCLUDE_DIR) -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Looking for wxWidgets - not found. -- Looking for Matlab - not found. -- Looking for Octave - not found. -- The imported target "vtkgdcm" references the file "/usr/lib/i386-linux-gnu/libvtkgdcm.so.2.8.2" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmsharpglue" references the file "/usr/lib/i386-linux-gnu/libvtkgdcmsharpglue.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmJava" references the file "/usr/lib/i386-linux-gnu/jni/libvtkgdcmJava.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmPython" references the file "/usr/lib/python/dist-packages/libvtkgdcmPython.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmPythonD" references the file "/usr/lib/i386-linux-gnu/libvtkgdcmPythonD.so.2.8.2" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmdump" references the file "/usr/bin/gdcmdump" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmdiff" references the file "/usr/bin/gdcmdiff" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmraw" references the file "/usr/bin/gdcmraw" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmscanner" references the file "/usr/bin/gdcmscanner" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmanon" references the file "/usr/bin/gdcmanon" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmgendir" references the file "/usr/bin/gdcmgendir" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmimg" references the file "/usr/bin/gdcmimg" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmconv" references the file "/usr/bin/gdcmconv" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmtar" references the file "/usr/bin/gdcmtar" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcminfo" references the file "/usr/bin/gdcminfo" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmscu" references the file "/usr/bin/gdcmscu" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmxml" references the file "/usr/bin/gdcmxml" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmpap3" references the file "/usr/bin/gdcmpap3" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmpdf" references the file "/usr/bin/gdcmpdf" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/i386-linux-gnu/gdcm-2.8/GDCMTargets.cmake" but not all the files it references. -- ITK_VERSION = 4.12.2 found -- Found unsuitable Qt version "" from NOTFOUND -- Looking for Qt4 - not found -- Could NOT find LIBYAML (missing: LIBYAML_LIBRARIES LIBYAML_INCLUDE_DIR) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu make[1]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1' dh_auto_build -a cd obj-i686-linux-gnu && make -j4 make[1]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' /usr/bin/cmake -H/<>/plastimatch-1.6.6+dfsg.1 -B/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/CMakeFiles /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/depend make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9 /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/libs/specfun /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun/CMakeFiles/specfun.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/inih-r29/CMakeFiles/inih.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/libs/devillard /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/devillard /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color= Scanning dependencies of target inih Scanning dependencies of target lbfgs make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' Scanning dependencies of target specfun make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' Scanning dependencies of target devillard make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 0%] Building C object libs/inih-r29/CMakeFiles/inih.dir/ini.c.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/inih.dir/ini.c.o -c /<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29/ini.c [ 1%] Building C object libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o [ 1%] Building CXX object libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun && /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/specfun.dir/mpbdv.c.o -c /<>/plastimatch-1.6.6+dfsg.1/libs/specfun/mpbdv.c cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/devillard && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/devillard.dir/wirth.cpp.o -c /<>/plastimatch-1.6.6+dfsg.1/libs/devillard/wirth.cpp [ 1%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c [ 1%] Linking CXX static library ../../libdevillard.a cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/devillard && /usr/bin/cmake -P CMakeFiles/devillard.dir/cmake_clean_target.cmake cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/devillard && /usr/bin/cmake -E cmake_link_script CMakeFiles/devillard.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libdevillard.a CMakeFiles/devillard.dir/wirth.cpp.o /usr/bin/ranlib ../../libdevillard.a make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 1%] Built target devillard [ 2%] Building CXX object libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/inih.dir/INIReader.cpp.o -c /<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29/INIReader.cpp make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/DependInfo.cmake --color= Scanning dependencies of target nkidecompress make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 3%] Building CXX object libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress/nkidecompress.cxx [ 3%] Linking C static library ../../libspecfun.a cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o /usr/bin/ranlib ../../libspecfun.a make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 3%] Built target specfun make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= Scanning dependencies of target plmsys [ 3%] Linking CXX static library ../../libnkidecompress.a cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress && /usr/bin/cmake -E cmake_link_script CMakeFiles/nkidecompress.dir/link.txt --verbose=1 [ 4%] Building C object src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload.c.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/delayload.c.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/delayload.c /usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o /usr/bin/ranlib ../../libnkidecompress.a make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 4%] Built target nkidecompress [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/dir_list.cxx make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= Scanning dependencies of target plmclp make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 5%] Building CXX object src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp/plm_clp.cxx [ 5%] Linking C static library ../../liblbfgs.a cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -P CMakeFiles/lbfgs.dir/cmake_clean_target.cmake cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -E cmake_link_script CMakeFiles/lbfgs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../liblbfgs.a CMakeFiles/lbfgs.dir/lib/lbfgs.c.o /usr/bin/ranlib ../../liblbfgs.a make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 5%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/dlib_threads.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/dlib_threads.cxx [ 5%] Built target lbfgs [ 5%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/file_util.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/file_util.cxx [ 5%] Linking CXX static library ../../libinih.a cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 && /usr/bin/cmake -P CMakeFiles/inih.dir/cmake_clean_target.cmake cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 && /usr/bin/cmake -E cmake_link_script CMakeFiles/inih.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libinih.a CMakeFiles/inih.dir/ini.c.o CMakeFiles/inih.dir/INIReader.cpp.o /usr/bin/ranlib ../../libinih.a make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 5%] Built target inih [ 6%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/logfile.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/logfile.cxx make -f src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/build.make src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/DependInfo.cmake --color= Scanning dependencies of target raw_to_mha make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' Scanning dependencies of target mha_to_raw make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/build.make src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/build [ 6%] Building C object src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/raw_to_mha.c.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/raw_to_mha.dir/raw_to_mha.c.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/raw_to_mha.c make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 6%] Building C object src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/mha_to_raw.c.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/mha_to_raw.dir/mha_to_raw.c.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/mha_to_raw.c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/mha_to_raw.c: In function ‘main’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/mha_to_raw.c:75:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&c,1,1,fp1); ^~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/mha_to_raw.c:78:9: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&c,1,1,fp1); ^~~~~~~~~~~~~~~~~ [ 6%] Linking CXX executable ../../../raw_to_mha cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/raw_to_mha.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/raw_to_mha.dir/raw_to_mha.c.o -o ../../../raw_to_mha -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include [ 6%] Linking CXX executable ../../../mha_to_raw cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/mha_to_raw.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/mha_to_raw.dir/mha_to_raw.c.o -o ../../../mha_to_raw -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 6%] Built target raw_to_mha [ 6%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/option_range.cxx make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 6%] Built target mha_to_raw [ 6%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/path_util.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/path_util.cxx [ 6%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/plm_endian.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/plm_endian.cxx [ 7%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/plm_fwrite.cxx [ 7%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/plm_sleep.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/plm_sleep.cxx [ 7%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/plm_timer.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/plm_timer.cxx [ 7%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/print_and_exit.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/print_and_exit.cxx [ 8%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -I/usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsys.dir/string_util.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys/string_util.cxx [ 8%] Linking CXX shared library ../../../libplmsys.so cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmsys.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmsys.so.1.6 -o ../../../libplmsys.so.1.6 CMakeFiles/plmsys.dir/delayload.c.o CMakeFiles/plmsys.dir/dir_list.cxx.o CMakeFiles/plmsys.dir/dlib_threads.cxx.o CMakeFiles/plmsys.dir/file_util.cxx.o CMakeFiles/plmsys.dir/logfile.cxx.o CMakeFiles/plmsys.dir/option_range.cxx.o CMakeFiles/plmsys.dir/path_util.cxx.o CMakeFiles/plmsys.dir/plm_endian.cxx.o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o CMakeFiles/plmsys.dir/plm_sleep.cxx.o CMakeFiles/plmsys.dir/plm_timer.cxx.o CMakeFiles/plmsys.dir/print_and_exit.cxx.o CMakeFiles/plmsys.dir/string_util.cxx.o -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -ldl -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -ldl cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys && /usr/bin/cmake -E cmake_symlink_library ../../../libplmsys.so.1.6 ../../../libplmsys.so.1.6 ../../../libplmsys.so make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 8%] Built target plmsys make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/DependInfo.cmake --color= [ 8%] Linking CXX static library libplmclp.a cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -P CMakeFiles/plmclp.dir/cmake_clean_target.cmake cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmclp.dir/link.txt --verbose=1 /usr/bin/ar qc libplmclp.a CMakeFiles/plmclp.dir/plm_clp.cxx.o /usr/bin/ranlib libplmclp.a make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 8%] Built target plmclp Scanning dependencies of target plmbase make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/aperture.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/aperture.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/bspline_interpolate.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/astroid_dose.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -msse2 -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/bspline_warp.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/bspline_xform.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/bspline_xform.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/bspline_xform_legacy.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/cxt_extract.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/cxt_extract.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/cxt_io.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/cxt_io.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dicom_probe.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dicom_probe.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dicom_util.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dicom_util.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/direction_cosines.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/direction_matrices.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/direction_matrices.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/exchkeys.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/exchkeys.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/float_pair_list.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/float_pair_list.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/gaussian.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/gaussian.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/hnd_io.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/hnd_io.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/interpolate.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/interpolate.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_bbox.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_bbox.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_dicom_load.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_dicom_load.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_dicom_load.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_dicom_save.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_dicom_save.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_dicom_save.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_directions.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_directions.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_accumulate.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_cast.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_cast.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_clone.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_clone.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_create.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_create.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_load_char.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_load_vec.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_origin.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_region.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_region.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_save.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_save.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_scale.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_scale.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_scale.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_image_stats.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_metadata.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_metadata.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_pointset.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_pointset.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_resample.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_resample.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_volume_header.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/itk_warp.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/itk_warp.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/mc_dose.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/mc_dose.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/metadata.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/metadata.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/mha_io.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/mha_io.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/nki_io.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/nki_io.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/parameter_parser.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/parameter_parser.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/plm_file_format.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/plm_file_format.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/plm_image.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/plm_image.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/plm_file_format.cxx: In function ‘Plm_file_format plm_file_format_deduce(const char*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/plm_file_format.cxx:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line, MAX_LINE, fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/plm_image_convert.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/plm_image_header.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/plm_image_header.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/plm_image_set.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/plm_image_set.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_type.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/plm_image_type.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/plm_image_type.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_warp.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/plm_warp.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/plm_warp.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/pointset.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pointset.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset::load_txt(const char*) [with T = Labeled_point]’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pointset.cxx:100:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (s, 1024, fp); ~~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset::load_fcsv(const char*) [with T = Labeled_point]’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pointset.cxx:57:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (s, 1024, fp); ~~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset::load_txt(const char*) [with T = Point]’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pointset.cxx:100:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (s, 1024, fp); ~~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset::load_fcsv(const char*) [with T = Point]’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pointset.cxx:57:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (s, 1024, fp); ~~~~~~^~~~~~~~~~~~~ [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/pointset_warp.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pointset_warp.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/proj_image.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/proj_image.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/proj_image.cxx: In function ‘void pfm_load(Proj_image*, const char*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/proj_image.cxx:175:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/proj_image.cxx:183:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/proj_image.cxx:190:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/proj_image_dir.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/proj_matrix.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/proj_matrix.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_volume.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/proj_volume.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/proj_volume.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pwlut.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/pwlut.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/pwlut.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rasterize_slice.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rasterizer.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rasterizer.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/raw_pointset.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/raw_pointset.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function ‘Raw_pointset* pointset_load_fcsv(const char*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/raw_pointset.cxx:81:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (s, 1024, fp); ~~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function ‘Raw_pointset* pointset_load_txt(const char*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/raw_pointset.cxx:135:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (s, 1024, fp); ~~~~~~^~~~~~~~~~~~~ [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/ray_trace_exact.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/ray_trace_probe.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/ray_trace_uniform.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rpl_volume.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rpl_volume.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rpl_volume_lut.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rpl_volume_lut.cxx: In member function ‘void Rpl_volume_lut::build_lut()’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rpl_volume_lut.cxx:147:49: warning: narrowing conversion of ‘ap_xy[0]’ from ‘double’ to ‘float’ inside { } [-Wnarrowing] float ap_xy_float[2] = { ap_xy[0], ap_xy[1] }; ~~~~~~~^ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rpl_volume_lut.cxx:147:59: warning: narrowing conversion of ‘ap_xy[1]’ from ‘double’ to ‘float’ inside { } [-Wnarrowing] float ap_xy_float[2] = { ap_xy[0], ap_xy[1] }; ~~~~~~~^ [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rtds_dcmtk.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_gdcm.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rtds_gdcm.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rtds_gdcm.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rt_study.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rt_study.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rt_study_metadata.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rtog_io.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rtog_io.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rtss.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rtss.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rtss_contour.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rtss_contour.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rtss_roi.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rtss_roi.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rtplan.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rtplan.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rtplan_beam.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/rtplan_control_pt.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/segmentation.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/segmentation.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_extract.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/slice_extract.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/slice_extract.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_list.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/slice_list.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/slice_list.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_img_extract.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/ss_img_extract.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/ss_img_extract.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_list_io.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/ss_list_io.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/ss_list_io.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/thumbnail.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/thumbnail.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/thumbnail.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/vf.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/vf.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_convolve.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/vf_convolve.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/vf_convolve.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_jacobian.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/vf_jacobian.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/vf_jacobian.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_stats.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/vf_stats.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/vf_stats.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/volume.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/volume.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_conv.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/plmbase.dir/volume_conv.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/volume_conv.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_fill.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/volume_fill.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/volume_fill.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_gaussian.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/volume_gaussian.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/volume_gaussian.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_grad.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/volume_grad.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/volume_grad.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_header.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/volume_header.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/volume_header.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_limit.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/volume_limit.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/volume_limit.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_resample.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/volume_resample.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/volume_resample.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_stats.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/volume_stats.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/volume_stats.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xform.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_convert.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xform_convert.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_convert.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xform_legacy.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xform_point.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_point.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function ‘void xform_legacy_save_itk_bsp(itk::BSplineDeformableTransform::Pointer, const char*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx:230:93: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘itk::Transform::NumberOfParametersType {aka long unsigned int}’ [-Wformat=] printf (" # of parameters=%d\n", transform->GetBulkTransform()->GetNumberOfParameters()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xio_ct.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_ct.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function ‘void xform_legacy_load(Xform*, FILE*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx:37:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf,1024,fp); ~~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx:99:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,1024,fp); ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx:100:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,1024,fp); ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx:103:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,1024,fp); ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx:141:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,1024,fp); ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx:150:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,1024,fp); ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx:156:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,1024,fp); ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xform_legacy.cxx:168:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,1024,fp); ~~~~~^~~~~~~~~~~~~ [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_ct_transform.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xio_demographic.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_demographic.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xio_dir.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dir.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xio_dose.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xio_patient.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_patient.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xio_plan.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_plan.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xio_structures.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_structures.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx: In function ‘void xio_dose_load_header(Xio_dose_header*, const char*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx:73:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line1, sizeof(line1), fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx:82:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line1, sizeof(line1), fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx:86:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line1, sizeof(line1), fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx:90:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line1, sizeof(line1), fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx:101:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line1, sizeof(line1), fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx:106:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line1, sizeof(line1), fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx:117:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line1, sizeof(line1), fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx:120:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line1, sizeof(line1), fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_dose.cxx:135:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (line1, sizeof(line1), fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xio_studyset.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_studyset.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/xpm.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xpm.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dcmtk_file.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_structures.cxx: In function ‘void add_cms_structure(Rtss*, const Xio_studyset&, const char*, float)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_structures.cxx:120:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_structures.cxx:121:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_structures.cxx:122:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_structures.cxx:123:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_structures.cxx:124:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_structures.cxx:134:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_structures.cxx:141:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/xio_structures.cxx:180:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buf, 1024, fp); ~~~~~~^~~~~~~~~~~~~~~ [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dcmtk_image.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dcmtk_metadata.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dcmtk_module.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx [ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dcmtk_rt_study.cxx [ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base/dcmtk_rt_study_p.cxx [ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util 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/usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ldlib -lnsl -ljpeg -lpng -lblas -llapack -lsqlite3 -lpthread -ldl cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base && /usr/bin/cmake -E cmake_symlink_library ../../../libplmbase.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmbase.so make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 41%] Built target plmbase make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util/CMakeFiles/plmutil.dir/DependInfo.cmake --color= Scanning dependencies of target plmutil make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/bspline_correspond.cxx cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/plmutil.dir/dice_statistics.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/dice_statistics.cxx cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/distance_map.cxx [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/dicom_sro_save.cxx [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/diff.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/diff.cxx [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/dvh.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/gamma_dose_comparison.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/geometry_chooser.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/hausdorff_distance.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/image_boundary.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/plmutil.dir/image_center.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/image_center.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/itk_adjust.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/itk_adjust.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/itk_distance_map.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/itk_crop.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/itk_gabor.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/itk_gabor.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/itk_mask.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/itk_mask.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/itk_scale.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/itk_scale.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/itk_threshold.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/itk_threshold.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/itk_union.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/itk_union.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/landmark_diff.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/landmark_diff.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/proj_image_filter.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/proj_image_filter.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/plm_series.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/plm_series.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/plm_study.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/plm_study.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/rt_study_warp.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/rt_study_warp.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/sift.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/sift.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/simplify_points.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/simplify_points.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/ss_img_stats.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/ss_img_stats.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/synthetic_mha.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/synthetic_mha.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/synthetic_vf.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/threshbox.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/threshbox.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/threshbox.cxx: In function ‘void do_overlap_fraction(Threshbox_parms*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/threshbox.cxx:257:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp1, "%s", tmpbuf); ~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/threshbox.cxx:258:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp1, "%f %f %f", &phys_max1[0], &phys_max1[1], &phys_max1[2]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/threshbox.cxx:266:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp2, "%s", tmpbuf); ~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/threshbox.cxx:267:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp2, "%f %f %f", &phys_max2[0], &phys_max2[1], &phys_max2[2]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/volume_adjust.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/volume_adjust.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/vf_invert.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/plmutil.dir/vf_invert.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/vf_invert.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/gabor.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/gabor.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmutil.dir/ramp_filter.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util/ramp_filter.cxx [ 50%] Linking CXX shared library ../../../libplmutil.so cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmutil.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmutil.so.1.6 -o ../../../libplmutil.so.1.6 CMakeFiles/plmutil.dir/bspline_correspond.cxx.o CMakeFiles/plmutil.dir/dice_statistics.cxx.o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o CMakeFiles/plmutil.dir/distance_map.cxx.o CMakeFiles/plmutil.dir/diff.cxx.o CMakeFiles/plmutil.dir/dvh.cxx.o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o CMakeFiles/plmutil.dir/image_boundary.cxx.o CMakeFiles/plmutil.dir/image_center.cxx.o CMakeFiles/plmutil.dir/itk_adjust.cxx.o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o CMakeFiles/plmutil.dir/itk_crop.cxx.o CMakeFiles/plmutil.dir/itk_gabor.cxx.o CMakeFiles/plmutil.dir/itk_mask.cxx.o CMakeFiles/plmutil.dir/itk_scale.cxx.o CMakeFiles/plmutil.dir/itk_threshold.cxx.o CMakeFiles/plmutil.dir/itk_union.cxx.o CMakeFiles/plmutil.dir/landmark_diff.cxx.o CMakeFiles/plmutil.dir/proj_image_filter.cxx.o CMakeFiles/plmutil.dir/plm_series.cxx.o CMakeFiles/plmutil.dir/plm_study.cxx.o CMakeFiles/plmutil.dir/rt_study_warp.cxx.o CMakeFiles/plmutil.dir/sift.cxx.o CMakeFiles/plmutil.dir/simplify_points.cxx.o CMakeFiles/plmutil.dir/ss_img_stats.cxx.o CMakeFiles/plmutil.dir/synthetic_mha.cxx.o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o CMakeFiles/plmutil.dir/threshbox.cxx.o CMakeFiles/plmutil.dir/volume_adjust.cxx.o CMakeFiles/plmutil.dir/vf_invert.cxx.o CMakeFiles/plmutil.dir/gabor.cxx.o CMakeFiles/plmutil.dir/ramp_filter.cxx.o -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include -lfftw3f -lfftw3 ../../../libdevillard.a ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldlib -lnsl -lblas -llapack -lsqlite3 -ldouble-conversion -lznz -lniftiio /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 -lCharLS /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ljpeg -lpng -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -ldl -lm ../../../libnkidecompress.a cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util && /usr/bin/cmake -E cmake_symlink_library ../../../libplmutil.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmutil.so make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 50%] Built target plmutil make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/depend make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/depend make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= Scanning dependencies of target plmreconstruct make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 50%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/bowtie_correction.cxx [ 50%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/plmreconstruct.dir/drr.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/drr.cxx Scanning dependencies of target plmdose make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 50%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/bragg_curve.cxx [ 50%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/dose_volume_functions.cxx Scanning dependencies of target plmregister make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 51%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline.cxx [ 51%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_landmarks.cxx [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/plmreconstruct.dir/fdk.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/fdk.cxx [ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/particle_type.cxx [ 53%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx [ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_gm.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_gm.cxx [ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_mi.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_mi.cxx [ 53%] Linking CXX shared library ../../../libplmreconstruct.so cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmreconstruct.so.1.6 -o ../../../libplmreconstruct.so.1.6 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lznz -lniftiio /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 -lCharLS /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm ../../../libnkidecompress.a -ldlib -lnsl -ljpeg -lpng -lblas -llapack -lsqlite3 -lpthread -ldl -lfftw3f -lfftw3 ../../../libdevillard.a [ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_beam.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_beam.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_mi.cxx: In function ‘void bspline_mi_hist_lookup(long int*, long int*, long int*, float*, Joint_histogram*, float, float)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_mi.cxx:212:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘plm_long {aka int}’ [-Wformat=] mi_hist->fixed.bins); ^ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_mi.cxx:212:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 7 has type ‘plm_long {aka int}’ [-Wformat=] [ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_beam_model.cxx cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_symlink_library ../../../libplmreconstruct.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmreconstruct.so make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 53%] Built target plmreconstruct [ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_mse.cxx [ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_optimize.cxx [ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_beam.cxx: In member function ‘bool Rt_beam::load(const char*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_beam.cxx:221:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (linebuf, 128, fp); ~~~~~~^~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx [ 55%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_optimize_nlopt.cxx [ 55%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx [ 55%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_parms.cxx [ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_score.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_score.cxx [ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_stage.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_stage.cxx [ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_state.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_state.cxx [ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_regularize.cxx [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx [ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_regularize_analytic.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function ‘bool Rt_depth_dose::load(const char*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:64:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (linebuf, 128, fp); ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function ‘bool Rt_depth_dose::load_xio(const char*)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:86:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (linebuf, 128, fp); ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:90:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (linebuf, 128, fp); ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:103:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (linebuf, 128, fp); ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:114:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (linebuf, 128, fp); ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:125:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (linebuf, 128, fp); ~~~~~~^~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_regularize_numeric.cxx [ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_dij.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_dij.cxx [ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/bspline_regularize_semi_analytic.cxx [ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/demons.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/demons.cxx [ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/demons_cpu.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/demons_cpu.cxx [ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/demons_state.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/demons_state.cxx [ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/gpuit_demons.cxx [ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/groupwise_parms.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/histogram.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/histogram.cxx [ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dose.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_dose.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_dose.cxx [ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_lut.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_lut.cxx [ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_spot_map.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_align_center.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_align_center.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_demons.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_demons.cxx [ 61%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_mebs.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_mebs.cxx [ 61%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_parms.cxx [ 61%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_plan.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_plan.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_plan.cxx [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_demons_util.cxx [ 61%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/rt_sigma.cxx [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx [ 63%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose/wed_parms.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx [ 63%] Linking CXX shared library ../../../libplmdose.so cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmdose.so.1.6 -o ../../../libplmdose.so.1.6 CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_dose.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/rt_plan.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../../../libplmutil.so.1.6 ../../../libspecfun.a ../../../libplmbase.so.1.6 -ldouble-conversion -lznz -lniftiio /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 -lCharLS /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.6 -ldlib -lnsl -ljpeg -lpng -lblas -llapack -lsqlite3 -lpthread -ldl -lfftw3f -lfftw3 ../../../libdevillard.a cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmdose.so make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 63%] Built target plmdose [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_log_demons.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_optimizer.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_registration.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_registration.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_registration_observer.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/itk_tps.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/itk_tps.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/joint_histogram.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/joint_histogram.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/landmark_warp.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/landmark_warp.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/metric_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/metric_parms.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/metric_state.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/metric_state.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/process_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/process_parms.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/rbf_cluster.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/rbf_gauss.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/rbf_wendland.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/registration.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/registration.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/registration_data.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/registration_data.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/registration_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/registration_parms.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/registration_resample.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/registration_resample.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/registration_util.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/registration_util.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/shared_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/shared_parms.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/similarity_metric_type.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/stage_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/stage_parms.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/translation_grid_search.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/translation_mi.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/translation_mi.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mse.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmregister.dir/translation_mse.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/translation_mse.cxx [ 70%] Linking CXX shared library ../../../libplmregister.so cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmregister.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmregister.so.1.6 -o ../../../libplmregister.so.1.6 CMakeFiles/plmregister.dir/bspline.cxx.o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o CMakeFiles/plmregister.dir/bspline_gm.cxx.o CMakeFiles/plmregister.dir/bspline_mi.cxx.o CMakeFiles/plmregister.dir/bspline_mse.cxx.o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o CMakeFiles/plmregister.dir/bspline_parms.cxx.o CMakeFiles/plmregister.dir/bspline_score.cxx.o CMakeFiles/plmregister.dir/bspline_stage.cxx.o CMakeFiles/plmregister.dir/bspline_state.cxx.o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o CMakeFiles/plmregister.dir/demons.cxx.o CMakeFiles/plmregister.dir/demons_cpu.cxx.o CMakeFiles/plmregister.dir/demons_state.cxx.o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o CMakeFiles/plmregister.dir/histogram.cxx.o CMakeFiles/plmregister.dir/itk_align_center.cxx.o CMakeFiles/plmregister.dir/itk_demons.cxx.o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o CMakeFiles/plmregister.dir/itk_registration.cxx.o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o CMakeFiles/plmregister.dir/itk_tps.cxx.o CMakeFiles/plmregister.dir/joint_histogram.cxx.o CMakeFiles/plmregister.dir/landmark_warp.cxx.o CMakeFiles/plmregister.dir/metric_parms.cxx.o CMakeFiles/plmregister.dir/metric_state.cxx.o CMakeFiles/plmregister.dir/process_parms.cxx.o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o CMakeFiles/plmregister.dir/registration.cxx.o CMakeFiles/plmregister.dir/registration_data.cxx.o CMakeFiles/plmregister.dir/registration_parms.cxx.o CMakeFiles/plmregister.dir/registration_resample.cxx.o CMakeFiles/plmregister.dir/registration_util.cxx.o CMakeFiles/plmregister.dir/shared_parms.cxx.o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o CMakeFiles/plmregister.dir/stage_parms.cxx.o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o CMakeFiles/plmregister.dir/translation_mi.cxx.o CMakeFiles/plmregister.dir/translation_mse.cxx.o -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../../../liblbfgs.a ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 -ldouble-conversion -lznz -lniftiio /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 -lCharLS /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.6 -ldlib -lnsl -ljpeg -lpng -lblas -llapack -lsqlite3 -lpthread -ldl -lfftw3f -lfftw3 ../../../libdevillard.a cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register && /usr/bin/cmake -E cmake_symlink_library ../../../libplmregister.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmregister.so make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 70%] Built target plmregister make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment/CMakeFiles/plmsegment.dir/DependInfo.cmake --color= Scanning dependencies of target plmsegment make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 70%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o [ 70%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/autolabel_parms.cxx cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/autolabel.cxx [ 70%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/autolabel_feature.cxx [ 71%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx [ 71%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/autolabel_task.cxx [ 71%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/autolabel_thumbnailer.cxx [ 71%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/autolabel_trainer.cxx [ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/dlib_trainer.cxx [ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/mabs.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/mabs.cxx [ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/mabs_atlas_selection.cxx [ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/mabs_parms.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/mabs_seg_weights.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/mabs_stats.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/mabs_staple.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/mabs_vote.cxx [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/ml_convert.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/ml_convert.cxx [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/segment_body.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -o CMakeFiles/plmsegment.dir/segment_body.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment/segment_body.cxx [ 74%] Linking CXX shared library ../../../libplmsegment.so cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmsegment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmsegment.so.1.6 -o ../../../libplmsegment.so.1.6 CMakeFiles/plmsegment.dir/autolabel.cxx.o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o CMakeFiles/plmsegment.dir/mabs.cxx.o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o CMakeFiles/plmsegment.dir/ml_convert.cxx.o CMakeFiles/plmsegment.dir/segment_body.cxx.o -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../../../libplmregister.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 -lfftw3f -lfftw3 ../../../libdevillard.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm ../../../libnkidecompress.a -ldlib -lnsl -ljpeg -lpng -lblas -llapack -lsqlite3 -lpthread -ldl ../../../liblbfgs.a cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment && /usr/bin/cmake -E cmake_symlink_library ../../../libplmsegment.so.1.6 ../../../libplmsegment.so.1.6 ../../../libplmsegment.so make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 74%] Built target plmsegment make -f src/plastimatch/cli/CMakeFiles/landmark_warp.dir/build.make src/plastimatch/cli/CMakeFiles/landmark_warp.dir/depend make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/landmark_warp.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= Scanning dependencies of target bragg_curve make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 74%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx Scanning dependencies of target landmark_warp make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/cli/CMakeFiles/landmark_warp.dir/build.make src/plastimatch/cli/CMakeFiles/landmark_warp.dir/build Scanning dependencies of target dicom_uid make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 74%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/dicom_uid_main.cxx [ 75%] Building CXX object src/plastimatch/cli/CMakeFiles/landmark_warp.dir/landmark_warp_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/landmark_warp.dir/landmark_warp_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/landmark_warp_main.cxx [ 75%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/bragg_curve_opts.cxx [ 75%] Linking CXX executable ../../../bragg_curve cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bragg_curve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -o ../../../bragg_curve -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl Scanning dependencies of target plastimatch make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_add.cxx make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Built target bragg_curve [ 75%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_adjust.cxx [ 75%] Linking CXX executable ../../../dicom_uid cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Built target dicom_uid make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= Scanning dependencies of target hnd_to_pfm make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx [ 75%] Linking CXX executable ../../../hnd_to_pfm cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -o ../../../hnd_to_pfm -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Built target hnd_to_pfm make -f src/plastimatch/standalone/CMakeFiles/fdk.dir/build.make src/plastimatch/standalone/CMakeFiles/fdk.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/fdk.dir/DependInfo.cmake --color= Scanning dependencies of target fdk make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/fdk.dir/build.make src/plastimatch/standalone/CMakeFiles/fdk.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Building CXX object src/plastimatch/standalone/CMakeFiles/fdk.dir/fdk_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/fdk.dir/fdk_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/fdk_main.cxx [ 75%] Building CXX object src/plastimatch/standalone/CMakeFiles/fdk.dir/fdk_opts.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/fdk.dir/fdk_opts.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/fdk_opts.cxx [ 75%] Linking CXX executable ../../../fdk cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/fdk.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/fdk.dir/fdk_main.cxx.o CMakeFiles/fdk.dir/fdk_opts.cxx.o -o ../../../fdk -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Built target fdk make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= Scanning dependencies of target compute_distance make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/compute_distance.cxx [ 76%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/closest_point.cxx [ 76%] Linking CXX executable ../../../landmark_warp cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/landmark_warp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/landmark_warp.dir/landmark_warp_main.cxx.o -o ../../../landmark_warp -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../clp/libplmclp.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 76%] Built target landmark_warp [ 76%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/read_obj.cxx make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= Scanning dependencies of target landmark_diff make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 76%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/landmark_diff_main.cxx [ 77%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_autolabel_train.cxx [ 77%] Linking CXX executable ../../../landmark_diff cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/landmark_diff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 77%] Built target landmark_diff [ 77%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_autolabel.cxx [ 77%] Linking CXX executable ../../../compute_distance cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= Scanning dependencies of target sobp make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/sobp_main.cxx make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 77%] Built target compute_distance [ 77%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_bbox.cxx [ 77%] Linking CXX executable ../../../sobp cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 77%] Built target sobp [ 77%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_benchmark.cxx make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= Scanning dependencies of target dicom_info make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/dicom_info.cxx make -f src/plastimatch/standalone/CMakeFiles/vf_invert.dir/build.make src/plastimatch/standalone/CMakeFiles/vf_invert.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/vf_invert.dir/DependInfo.cmake --color= Scanning dependencies of target vf_invert make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/vf_invert.dir/build.make src/plastimatch/standalone/CMakeFiles/vf_invert.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/vf_invert.dir/vf_invert_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/vf_invert.dir/vf_invert_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/vf_invert_main.cxx [ 79%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_boundary.cxx [ 79%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_compare.cxx [ 79%] Linking CXX executable ../../../vf_invert cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/vf_invert.dir/link.txt --verbose=1 [ 79%] Linking CXX executable ../../../dicom_info cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/vf_invert.dir/vf_invert_main.cxx.o -o ../../../vf_invert -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 79%] Built target dicom_info make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= Scanning dependencies of target xvi_archive make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 79%] Built target vf_invert make -f src/plastimatch/standalone/CMakeFiles/group_add.dir/build.make src/plastimatch/standalone/CMakeFiles/group_add.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/group_add.dir/DependInfo.cmake --color= Scanning dependencies of target group_add make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/group_add.dir/build.make src/plastimatch/standalone/CMakeFiles/group_add.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/group_add.dir/group_add.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/group_add.dir/group_add.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/group_add.cxx [ 79%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_compose.cxx [ 79%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_crop.cxx [ 80%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_dice.cxx [ 80%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_diff.cxx [ 80%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_dmap.cxx [ 81%] Linking CXX executable ../../../xvi_archive cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 81%] Built target xvi_archive make -f src/plastimatch/standalone/CMakeFiles/drr.dir/build.make src/plastimatch/standalone/CMakeFiles/drr.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/drr.dir/DependInfo.cmake --color= Scanning dependencies of target drr make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/drr.dir/build.make src/plastimatch/standalone/CMakeFiles/drr.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/drr.dir/drr_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/drr.dir/drr_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/drr_main.cxx [ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/drr.dir/drr_opts.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/drr.dir/drr_opts.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/drr_opts.cxx [ 82%] Linking CXX executable ../../../drr cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/drr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/drr.dir/drr_main.cxx.o CMakeFiles/drr.dir/drr_opts.cxx.o -o ../../../drr -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl [ 83%] Linking CXX executable ../../../group_add cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/group_add.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/group_add.dir/group_add.cxx.o -o ../../../group_add -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl [ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_dose.cxx make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 84%] Built target drr make -f src/plastimatch/standalone/CMakeFiles/filter.dir/build.make src/plastimatch/standalone/CMakeFiles/filter.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/filter.dir/DependInfo.cmake --color= Scanning dependencies of target filter make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/filter.dir/build.make src/plastimatch/standalone/CMakeFiles/filter.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 85%] Building CXX object src/plastimatch/standalone/CMakeFiles/filter.dir/filter.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/filter.dir/filter.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/filter.cxx make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 85%] Built target group_add make -f src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/build.make src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/DependInfo.cmake --color= Scanning dependencies of target cmd_prompt_launcher make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/build.make src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 85%] Building CXX object src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/cmd_prompt_launcher.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/cmd_prompt_launcher.dir/cmd_prompt_launcher.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/cmd_prompt_launcher.cxx [ 85%] Linking CXX executable ../../../cmd_prompt_launcher cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmd_prompt_launcher.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/cmd_prompt_launcher.dir/cmd_prompt_launcher.cxx.o -o ../../../cmd_prompt_launcher -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_drr.cxx make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 85%] Built target cmd_prompt_launcher make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= Scanning dependencies of target merge_vfs make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 86%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx [ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_dvh.cxx [ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_filter.cxx [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_gamma.cxx [ 87%] Linking CXX executable ../../../merge_vfs cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl [ 87%] Linking CXX executable ../../../filter cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/filter.dir/filter.cxx.o -o ../../../filter -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 87%] Built target merge_vfs [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_header.cxx make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 87%] Built target filter [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_jacobian.cxx make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= Scanning dependencies of target wed make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 88%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/wed.dir/wed_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/wed_main.cxx make -f src/plastimatch/standalone/CMakeFiles/bspline.dir/build.make src/plastimatch/standalone/CMakeFiles/bspline.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bspline.dir/DependInfo.cmake --color= Scanning dependencies of target bspline make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bspline.dir/build.make src/plastimatch/standalone/CMakeFiles/bspline.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 89%] Building CXX object src/plastimatch/standalone/CMakeFiles/bspline.dir/bspline_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/bspline.dir/bspline_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/bspline_main.cxx [ 89%] Linking CXX executable ../../../wed cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 89%] Built target wed [ 89%] Building CXX object src/plastimatch/standalone/CMakeFiles/bspline.dir/bspline_opts.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/bspline.dir/bspline_opts.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/bspline_opts.cxx make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= Scanning dependencies of target check_grad make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 89%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/check_grad.cxx [ 89%] Linking CXX executable ../../../bspline cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bspline.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/bspline.dir/bspline_main.cxx.o CMakeFiles/bspline.dir/bspline_opts.cxx.o -o ../../../bspline -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl [ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_mabs.cxx make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 89%] Built target bspline make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= Scanning dependencies of target demons make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 89%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/demons.dir/demons_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/demons_main.cxx [ 90%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/demons.dir/demons_opts.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/demons_opts.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_mask.cxx [ 91%] Linking CXX executable ../../../demons cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/demons.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/demons.dir/demons_main.cxx.o CMakeFiles/demons.dir/demons_opts.cxx.o -o ../../../demons -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 91%] Built target demons make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= Scanning dependencies of target shuffle_mha make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 92%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/shuffle_mha_main.cxx [ 92%] Linking CXX executable ../../../shuffle_mha cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl [ 93%] Linking CXX executable ../../../check_grad cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 93%] Built target shuffle_mha make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color= Scanning dependencies of target dlib_train make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 94%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone/dlib_train.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_maximum.cxx make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 94%] Built target check_grad [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_ml_convert.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_multiply.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_probe.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_register.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_resample.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_scale.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_segment.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_sift.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_stats.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_synth.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_synth_vf.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_threshold.cxx [ 97%] Linking CXX executable ../../../dlib_train cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlib_train.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dlib_train.dir/dlib_train.cxx.o -o ../../../dlib_train -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 97%] Built target dlib_train [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_thumbnail.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_union.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_vf_invert.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_vf_invert.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_vf_invert.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_warp.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_warp_dij.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_warp_pointset.cxx [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx: In function ‘void do_command_xio_dvh(int, char**)’: /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:46:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 200, fp); //XiO Dose Volume Histogram ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:49:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(patientid, 200, fp); // patient ID, abcde1234 ~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:50:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 200, fp); // plan ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:51:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(structurename, 200, fp); // structure name ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:52:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 200, fp); // N.NN mm resolution ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:54:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 200, fp); // number of bins ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:59:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 200, fp); // date ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:60:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 200, fp); // table header: min bin dose (cGy), bin volume (cc) ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:78:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 200, fp); ~~~~~^~~~~~~~~~~~~~ [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.6.6+dfsg.1/src/plastimatch -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu -I/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/i386-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.12 -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.6.6+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.6.6+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.6.6+dfsg.1/libs -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac -I/<>/plastimatch-1.6.6+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.6.6+dfsg.1/libs/devillard -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli/plastimatch_main.cxx [100%] Linking CXX executable ../../../plastimatch cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/plastimatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.6.6+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/plastimatch.dir/pcmd_add.cxx.o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o CMakeFiles/plastimatch.dir/pcmd_register.cxx.o CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o CMakeFiles/plastimatch.dir/pcmd_vf_invert.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -o ../../../plastimatch -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.6 ../../../libplmregister.so.1.6 ../../../libplmreconstruct.so.1.6 ../../../libplmdose.so.1.6 ../../../libplmutil.so.1.6 ../../../libplmbase.so.1.6 ../../../libplmsys.so.1.6 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/libi2d.so.12.3.6.2 /usr/lib/libdcmjpeg.so.12.3.6.2 /usr/lib/libijg8.so.12.3.6.2 /usr/lib/libijg12.so.12.3.6.2 /usr/lib/libijg16.so.12.3.6.2 /usr/lib/libdcmjpls.so.12.3.6.2 /usr/lib/libcmr.so.12.3.6.2 /usr/lib/libdcmwlm.so.12.3.6.2 /usr/lib/libdcmpstat.so.12.3.6.2 /usr/lib/libdcmrt.so.12.3.6.2 /usr/lib/libdcmseg.so.12.3.6.2 /usr/lib/libdcmtract.so.12.3.6.2 /usr/lib/libdcmpmap.so.12.3.6.2 -ldlib -lpthread -lnsl -lpng -ljpeg -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../clp/libplmclp.a ../../../liblbfgs.a -lCharLS /usr/lib/libdcmtls.so.12.3.6.2 /usr/lib/libdcmsr.so.12.3.6.2 /usr/lib/libdcmimage.so.12.3.6.2 -ltiff -lxml2 /usr/lib/libdcmdsig.so.12.3.6.2 -lssl -lcrypto /usr/lib/libdcmqrdb.so.12.3.6.2 /usr/lib/libdcmnet.so.12.3.6.2 -lwrap /usr/lib/libdcmimgle.so.12.3.6.2 /usr/lib/libdcmfg.so.12.3.6.2 /usr/lib/libdcmiod.so.12.3.6.2 /usr/lib/libdcmdata.so.12.3.6.2 /usr/lib/liboflog.so.12.3.6.2 /usr/lib/libofstd.so.12.3.6.2 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/i386-linux-gnu/libgdcmMSFF.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDICT.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmIOD.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmDSED.so.2.8.2 /usr/lib/i386-linux-gnu/libgdcmCommon.so.2.8.2 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -lm -ljpeg -lpng -ldl make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [100%] Built target plastimatch make[2]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1' dh_auto_test cd obj-i686-linux-gnu && make -j4 test ARGS\+=-j4 make[2]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu Start 4: gauss-1 Start 5: gauss-2 Start 6: gauss-3 Start 8: gauss-5 1/439 Test #5: gauss-2 ............................... Passed 0.12 sec 2/439 Test #6: gauss-3 ............................... Passed 0.12 sec 3/439 Test #8: gauss-5 ............................... Passed 0.10 sec Start 22: rect-1 Start 1: black-1 Start 2: donut-1 4/439 Test #4: gauss-1 ............................... Passed 0.13 sec 5/439 Test #1: black-1 ............................... Passed 0.08 sec 6/439 Test #22: rect-1 ................................ Passed 0.17 sec 7/439 Test #2: donut-1 ............................... Passed 0.16 sec Start 7: gauss-4 Start 9: gauss-6 Start 11: gauss-double-1 Start 12: gauss-double-2 8/439 Test #11: gauss-double-1 ........................ Passed 0.11 sec 9/439 Test #12: gauss-double-2 ........................ Passed 0.11 sec 10/439 Test #9: gauss-6 ............................... Passed 0.11 sec 11/439 Test #7: gauss-4 ............................... Passed 0.12 sec Start 13: gauss-ushort-1 Start 14: gauss-ushort-2 Start 15: lung-1 Start 23: rect-2 12/439 Test #14: gauss-ushort-2 ........................ Passed 0.10 sec 13/439 Test #13: gauss-ushort-1 ........................ Passed 0.11 sec 14/439 Test #23: rect-2 ................................ Passed 0.20 sec Start 24: rect-2s Start 25: rect-3 Start 26: rect-4 15/439 Test #26: rect-4 ................................ Passed 0.08 sec 16/439 Test #25: rect-3 ................................ Passed 0.18 sec 17/439 Test #24: rect-2s ............................... Passed 0.18 sec Start 27: rect-5 Start 33: rect-10-roi-1 Start 36: rect-11-roi 18/439 Test #36: rect-11-roi ........................... Passed 0.09 sec 19/439 Test #33: rect-10-roi-1 ......................... Passed 0.19 sec 20/439 Test #27: rect-5 ................................ Passed 0.19 sec Start 37: rect-12 Start 38: rect-13 Start 39: rect-14 21/439 Test #39: rect-14 ............................... Passed 0.09 sec 22/439 Test #38: rect-13 ............................... Passed 0.19 sec 23/439 Test #37: rect-12 ............................... Passed 0.19 sec Start 40: rect-15 Start 41: rect-16 Start 50: rectarr-03-a 24/439 Test #50: rectarr-03-a .......................... Passed 0.09 sec 25/439 Test #15: lung-1 ................................ Passed 0.91 sec 26/439 Test #41: rect-16 ............................... Passed 0.14 sec 27/439 Test #40: rect-15 ............................... Passed 0.14 sec Start 55: sphere-1 Start 56: sphere-2 Start 57: sphere-3 Start 62: vf-zero 28/439 Test #57: sphere-3 .............................. Passed 0.11 sec 29/439 Test #56: sphere-2 .............................. Passed 0.12 sec 30/439 Test #55: sphere-1 .............................. Passed 0.12 sec Start 63: vf-trans-1 Start 64: vf-trans-2 Start 75: bspline-c 31/439 Test #62: vf-zero ............................... Passed 0.12 sec 32/439 Test #64: vf-trans-2 ............................ Passed 0.10 sec 33/439 Test #63: vf-trans-1 ............................ Passed 0.11 sec Start 81: bspline-mi-c-1 Start 87: drr-a Start 133: plm-convert-dicom-a 34/439 Test #133: plm-convert-dicom-a ................... Passed 0.22 sec Start 201: plm-reg-itk-translation 35/439 Test #75: bspline-c ............................. Passed 0.44 sec 36/439 Test #87: drr-a ................................. Passed 0.34 sec Start 230: plm-bsp-mse-h Start 341: plm-reg-compose 37/439 Test #201: plm-reg-itk-translation ............... Passed 0.41 sec Start 422: plm-xf-convert-d 38/439 Test #341: plm-reg-compose ....................... Passed 0.30 sec 39/439 Test #230: plm-bsp-mse-h ......................... Passed 0.31 sec 40/439 Test #422: plm-xf-convert-d ...................... Passed 0.08 sec Start 16: lung-2 Start 30: rect-8 Start 31: rect-9 41/439 Test #30: rect-8 ................................ Passed 0.11 sec 42/439 Test #81: bspline-mi-c-1 ........................ Passed 1.24 sec Start 45: rectarr-01-a Start 51: rectarr-03 43/439 Test #31: rect-9 ................................ Passed 0.21 sec 44/439 Test #51: rectarr-03 ............................ Passed 0.08 sec 45/439 Test #45: rectarr-01-a .......................... Passed 0.19 sec Start 52: rectarr-04 Start 65: vf-radial-1 Start 90: drr-b 46/439 Test #65: vf-radial-1 ........................... Passed 0.08 sec 47/439 Test #90: drr-b ................................. Passed 0.18 sec 48/439 Test #52: rectarr-04 ............................ Passed 0.19 sec Start 93: drr-c Start 96: fdk-cpu-a Start 99: fdk-cpu-d 49/439 Test #16: lung-2 ................................ Passed 0.79 sec 50/439 Test #93: drr-c ................................. Passed 0.37 sec Start 102: landmark-warp-a Start 107: landmark-warp-b 51/439 Test #107: landmark-warp-b ....................... Passed 0.19 sec 52/439 Test #102: landmark-warp-a ....................... Passed 0.31 sec Start 112: landmark-warp-c Start 118: plm-add-a 53/439 Test #118: plm-add-a ............................. Passed 0.18 sec 54/439 Test #112: landmark-warp-c ....................... Passed 0.28 sec Start 121: plm-add-b Start 124: plm-add-vf-a 55/439 Test #124: plm-add-vf-a .......................... Passed 0.20 sec 56/439 Test #121: plm-add-b ............................. Passed 0.31 sec Start 127: plm-add-vf-b Start 130: plm-boundary-a 57/439 Test #130: plm-boundary-a ........................ Passed 0.17 sec 58/439 Test #127: plm-add-vf-b .......................... Passed 0.27 sec Start 137: plm-convert-dicom-c Start 143: plm-convert-dicom-donut-a 59/439 Test #143: plm-convert-dicom-donut-a ............. Passed 0.19 sec 60/439 Test #96: fdk-cpu-a ............................. Passed 1.84 sec 61/439 Test #137: plm-convert-dicom-c ................... Passed 0.35 sec Start 146: plm-convert-dicom-donut-b Start 150: plm-convert-cxt Start 154: plm-convert-dose-scale 62/439 Test #154: plm-convert-dose-scale ................ Passed 0.13 sec 63/439 Test #150: plm-convert-cxt ....................... Passed 0.16 sec 64/439 Test #146: plm-convert-dicom-donut-b ............. Passed 0.16 sec Start 172: plm-fill-a Start 175: plm-mask-a Start 178: plm-gamma-a 65/439 Test #175: plm-mask-a ............................ Passed 0.21 sec 66/439 Test #172: plm-fill-a ............................ Passed 0.22 sec Start 181: plm-gamma-b Start 188: plm-maximum-a 67/439 Test #178: plm-gamma-a ........................... Passed 0.31 sec 68/439 Test #188: plm-maximum-a ......................... Passed 0.19 sec 69/439 Test #181: plm-gamma-b ........................... Passed 0.22 sec Start 191: plm-multiply-a Start 194: plm-multiply-vf-a Start 198: plm-reg-align-center 70/439 Test #198: plm-reg-align-center .................. Passed 0.10 sec 71/439 Test #194: plm-multiply-vf-a ..................... Passed 0.13 sec 72/439 Test #191: plm-multiply-a ........................ Passed 0.17 sec Start 204: plm-reg-itk-rigid-a Start 209: plm-reg-itk-similarity Start 214: plm-reg-itk-bspline 73/439 Test #209: plm-reg-itk-similarity ................ Passed 0.28 sec 74/439 Test #204: plm-reg-itk-rigid-a ................... Passed 0.28 sec Start 217: plm-reg-itk-demons Start 227: plm-bsp-mse-c 75/439 Test #227: plm-bsp-mse-c ......................... Passed 0.28 sec Start 233: plm-bsp-mse-k 76/439 Test #233: plm-bsp-mse-k ......................... Passed 0.24 sec 77/439 Test #217: plm-reg-itk-demons .................... Passed 0.62 sec Start 236: plm-bsp-mse-l Start 239: plm-bsp-mi-c 78/439 Test #236: plm-bsp-mse-l ......................... Passed 0.32 sec Start 242: plm-bsp-mi-k 79/439 Test #239: plm-bsp-mi-c .......................... Passed 0.52 sec 80/439 Test #242: plm-bsp-mi-k .......................... Passed 0.29 sec Start 245: plm-bsp-gm-k Start 250: plm-bsp-openmp 81/439 Test #99: fdk-cpu-d ............................. Passed 4.18 sec 82/439 Test #250: plm-bsp-openmp ........................ Passed 0.15 sec 83/439 Test #245: plm-bsp-gm-k .......................... Passed 0.22 sec Start 257: plm-bsp-ushort Start 260: plm-bsp-double Start 264: plm-bsp-char-output 84/439 Test #214: plm-reg-itk-bspline ................... Passed 1.83 sec 85/439 Test #260: plm-bsp-double ........................ Passed 0.18 sec 86/439 Test #257: plm-bsp-ushort ........................ Passed 0.18 sec Start 268: plm-bsp-regularize-none Start 271: plm-bsp-regularize-analytic Start 274: plm-bsp-regularize-numeric 87/439 Test #264: plm-bsp-char-output ................... Passed 0.20 sec Start 278: plm-bsp-landmark-b 88/439 Test #268: plm-bsp-regularize-none ............... Passed 0.62 sec Start 281: plm-bsp-landmark-c 89/439 Test #278: plm-bsp-landmark-b .................... Passed 0.31 sec 90/439 Test #271: plm-bsp-regularize-analytic ........... Passed 0.72 sec Start 284: plm-bsp-landmark-d Start 287: plm-bsp-landmark-e 91/439 Test #284: plm-bsp-landmark-d .................... Passed 0.20 sec 92/439 Test #281: plm-bsp-landmark-c .................... Passed 0.41 sec Start 290: plm-bsp-dcos-a Start 293: plm-bsp-dcos-b 93/439 Test #287: plm-bsp-landmark-e .................... Passed 0.21 sec 94/439 Test #290: plm-bsp-dcos-a ........................ Passed 0.30 sec Start 296: plm-bsp-dcos-c Start 299: plm-bsp-dcos-d 95/439 Test #293: plm-bsp-dcos-b ........................ Passed 0.51 sec 96/439 Test #296: plm-bsp-dcos-c ........................ Passed 0.21 sec Start 302: plm-bsp-dcos-e Start 305: plm-bsp-dcos-f 97/439 Test #299: plm-bsp-dcos-d ........................ Passed 0.21 sec 98/439 Test #302: plm-bsp-dcos-e ........................ Passed 0.26 sec Start 308: plm-reg-multi-a Start 311: plm-reg-multi-b 99/439 Test #305: plm-bsp-dcos-f ........................ Passed 0.47 sec Start 314: plm-reg-dv-itk-translation 100/439 Test #274: plm-bsp-regularize-numeric ............ Passed 2.31 sec 101/439 Test #314: plm-reg-dv-itk-translation ............ Passed 0.27 sec 102/439 Test #308: plm-reg-multi-a ....................... Passed 0.63 sec Start 323: plm-reg-process-a Start 326: plm-reg-trans-a Start 329: plm-reg-trans-b 103/439 Test #323: plm-reg-process-a ..................... Passed 0.31 sec Start 332: plm-reg-trans-mi-a 104/439 Test #311: plm-reg-multi-b ....................... Passed 0.94 sec Start 335: plm-reg-autores-a 105/439 Test #335: plm-reg-autores-a ..................... Passed 0.40 sec Start 338: plm-reg-autores-b 106/439 Test #329: plm-reg-trans-b ....................... Passed 1.47 sec Start 342: plm-compose-a 107/439 Test #338: plm-reg-autores-b ..................... Passed 0.36 sec 108/439 Test #326: plm-reg-trans-a ....................... Passed 1.78 sec Start 346: plm-compose-b Start 350: plm-compose-c 109/439 Test #342: plm-compose-a ......................... Passed 0.31 sec 110/439 Test #346: plm-compose-b ......................... Passed 0.10 sec Start 354: plm-resample-a Start 357: plm-resample-b 111/439 Test #350: plm-compose-c ......................... Passed 0.24 sec 112/439 Test #354: plm-resample-a ........................ Passed 0.14 sec Start 360: plm-resample-c Start 363: plm-scale-a 113/439 Test #357: plm-resample-b ........................ Passed 0.34 sec 114/439 Test #360: plm-resample-c ........................ Passed 0.13 sec Start 366: plm-scale-vf-a Start 372: plm-thumbnail-a 115/439 Test #363: plm-scale-a ........................... Passed 0.23 sec 116/439 Test #372: plm-thumbnail-a ....................... Passed 0.08 sec 117/439 Test #366: plm-scale-vf-a ........................ Passed 0.11 sec Start 375: plm-thumbnail-b Start 378: plm-thumbnail-c Start 381: plm-union 118/439 Test #378: plm-thumbnail-c ....................... Passed 0.10 sec 119/439 Test #375: plm-thumbnail-b ....................... Passed 0.11 sec Start 384: plm-threshold-a Start 387: plm-threshold-b 120/439 Test #381: plm-union ............................. Passed 0.21 sec 121/439 Test #387: plm-threshold-b ....................... Passed 0.08 sec 122/439 Test #384: plm-threshold-a ....................... Passed 0.09 sec Start 390: plm-threshold-c Start 396: plm-warp-a Start 399: plm-warp-b 123/439 Test #390: plm-threshold-c ....................... Passed 0.21 sec Start 404: plm-warp-c 124/439 Test #399: plm-warp-b ............................ Passed 0.30 sec 125/439 Test #396: plm-warp-a ............................ Passed 0.36 sec Start 407: plm-warp-d Start 410: plm-warp-g 126/439 Test #407: plm-warp-d ............................ Passed 0.18 sec 127/439 Test #404: plm-warp-c ............................ Passed 0.43 sec Start 413: plm-warp-h Start 416: plm-warp-i 128/439 Test #410: plm-warp-g ............................ Passed 0.29 sec 129/439 Test #413: plm-warp-h ............................ Passed 0.17 sec 130/439 Test #332: plm-reg-trans-mi-a .................... Passed 3.91 sec Start 419: plm-xf-convert-a Start 423: plm-xf-convert-d-warp-1 Start 426: plm-xf-convert-d-warp-2 131/439 Test #416: plm-warp-i ............................ Passed 0.32 sec 132/439 Test #423: plm-xf-convert-d-warp-1 ............... Passed 0.13 sec 133/439 Test #419: plm-xf-convert-a ...................... Passed 0.14 sec Start 431: vf-invert-zero-1 Start 434: vf-invert-trans-1 Start 32: rect-10 134/439 Test #32: rect-10 ............................... Passed 0.11 sec 135/439 Test #431: vf-invert-zero-1 ...................... Passed 0.22 sec Start 35: rect-11 Start 44: rect-19 136/439 Test #426: plm-xf-convert-d-warp-2 ............... Passed 0.39 sec 137/439 Test #44: rect-19 ............................... Passed 0.11 sec 138/439 Test #434: vf-invert-trans-1 ..................... Passed 0.33 sec 139/439 Test #35: rect-11 ............................... Passed 0.12 sec Start 46: rectarr-01 Start 47: rectarr-02 Start 48: rectarr-m-01 Start 49: rectarr-m-02 140/439 Test #48: rectarr-m-01 .......................... Passed 0.14 sec 141/439 Test #47: rectarr-02 ............................ Passed 0.15 sec 142/439 Test #46: rectarr-01 ............................ Passed 0.16 sec Start 54: roi-1 Start 58: sphere-4 Start 67: vf-zero-stats 143/439 Test #49: rectarr-m-02 .......................... Passed 0.16 sec 144/439 Test #58: sphere-4 .............................. Passed 0.10 sec 145/439 Test #54: roi-1 ................................. Passed 0.10 sec Start 69: vf-trans-1-stats Start 71: vf-trans-2-stats Start 73: vf-radial-1-stats 146/439 Test #67: vf-zero-stats ......................... Passed 0.22 sec 147/439 Test #71: vf-trans-2-stats ...................... Passed 0.12 sec 148/439 Test #69: vf-trans-1-stats ...................... Passed 0.19 sec Start 77: bspline-g Start 79: bspline-h Start 83: bspline-mi-c-2 149/439 Test #73: vf-radial-1-stats ..................... Passed 0.19 sec Start 85: demons-a 150/439 Test #79: bspline-h ............................. Passed 0.54 sec 151/439 Test #77: bspline-g ............................. Passed 0.54 sec Start 88: drr-a-stats Start 91: drr-b-stats 152/439 Test #91: drr-b-stats ........................... Passed 0.21 sec 153/439 Test #88: drr-a-stats ........................... Passed 0.21 sec Start 94: drr-c-stats Start 97: fdk-cpu-a-stats 154/439 Test #97: fdk-cpu-a-stats ....................... Passed 0.23 sec 155/439 Test #94: drr-c-stats ........................... Passed 0.24 sec Start 100: fdk-cpu-d-stats Start 103: landmark-warp-a-stats-1 156/439 Test #85: demons-a .............................. Passed 0.80 sec 157/439 Test #100: fdk-cpu-d-stats ....................... Passed 0.21 sec Start 105: landmark-warp-a-stats-2 Start 108: landmark-warp-b-stats-1 158/439 Test #103: landmark-warp-a-stats-1 ............... Passed 0.21 sec 159/439 Test #108: landmark-warp-b-stats-1 ............... Passed 0.11 sec 160/439 Test #105: landmark-warp-a-stats-2 ............... Passed 0.11 sec Start 110: landmark-warp-b-stats-2 Start 113: landmark-warp-c-stats-1 Start 115: landmark-warp-c-stats-2 161/439 Test #83: bspline-mi-c-2 ........................ Passed 1.48 sec 162/439 Test #113: landmark-warp-c-stats-1 ............... Passed 0.17 sec 163/439 Test #110: landmark-warp-b-stats-2 ............... Passed 0.17 sec Start 119: plm-add-a-stats Start 122: plm-add-b-stats Start 125: plm-add-vf-a-stats 164/439 Test #115: landmark-warp-c-stats-2 ............... Passed 0.17 sec 165/439 Test #122: plm-add-b-stats ....................... Passed 0.15 sec 166/439 Test #119: plm-add-a-stats ....................... Passed 0.15 sec Start 128: plm-add-vf-b-stats Start 131: plm-boundary-a-stats Start 134: plm-convert-dicom-a-stats 167/439 Test #125: plm-add-vf-a-stats .................... Passed 0.26 sec 168/439 Test #134: plm-convert-dicom-a-stats ............. Passed 0.19 sec 169/439 Test #128: plm-add-vf-b-stats .................... Passed 0.20 sec Start 138: plm-convert-dicom-c-stats Start 144: plm-convert-dicom-donut-a-stats Start 147: plm-convert-dicom-donut-b-stats 170/439 Test #131: plm-boundary-a-stats .................. Passed 0.20 sec 171/439 Test #144: plm-convert-dicom-donut-a-stats ....... Passed 0.12 sec 172/439 Test #138: plm-convert-dicom-c-stats ............. Passed 0.13 sec Start 151: plm-convert-cxt-stats Start 155: plm-convert-dose-scale-stats Start 157: plm-dice-a 173/439 Test #147: plm-convert-dicom-donut-b-stats ....... Passed 0.24 sec 174/439 Test #157: plm-dice-a ............................ Passed 0.10 sec 175/439 Test #151: plm-convert-cxt-stats ................. Passed 0.17 sec Start 159: plm-dice-b Start 161: plm-dice-c Start 166: plm-dvh-a 176/439 Test #155: plm-convert-dose-scale-stats .......... Passed 0.18 sec 177/439 Test #161: plm-dice-c ............................ Passed 0.12 sec 178/439 Test #159: plm-dice-b ............................ Passed 0.13 sec Start 169: plm-dvh-b Start 173: plm-fill-a-stats Start 176: plm-mask-a-stats 179/439 Test #166: plm-dvh-a ............................. Passed 0.23 sec 180/439 Test #173: plm-fill-a-stats ...................... Passed 0.11 sec 181/439 Test #169: plm-dvh-b ............................. Passed 0.11 sec Start 179: plm-gamma-a-stats Start 182: plm-gamma-b-stats Start 184: plm-gamma-c 182/439 Test #176: plm-mask-a-stats ...................... Passed 0.11 sec 183/439 Test #182: plm-gamma-b-stats ..................... Passed 0.10 sec 184/439 Test #179: plm-gamma-a-stats ..................... Passed 0.11 sec Start 186: plm-gamma-d Start 189: plm-maximum-a-stats Start 192: plm-multiply-a-stats 185/439 Test #184: plm-gamma-c ........................... Passed 0.22 sec 186/439 Test #192: plm-multiply-a-stats .................. Passed 0.13 sec 187/439 Test #186: plm-gamma-d ........................... Passed 0.21 sec Start 195: plm-multiply-vf-a-stats Start 199: plm-reg-align-center-stats Start 202: plm-reg-itk-translation-stats 188/439 Test #189: plm-maximum-a-stats ................... Passed 0.21 sec 189/439 Test #199: plm-reg-align-center-stats ............ Passed 0.13 sec 190/439 Test #195: plm-multiply-vf-a-stats ............... Passed 0.13 sec Start 205: plm-reg-itk-rigid-a-stats-1 Start 207: plm-reg-itk-rigid-a-stats-2 Start 210: plm-reg-itk-similarity-stats-1 191/439 Test #202: plm-reg-itk-translation-stats ......... Passed 0.23 sec 192/439 Test #207: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.13 sec 193/439 Test #205: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.17 sec Start 212: plm-reg-itk-similarity-stats-2 Start 215: plm-reg-itk-bspline-stats-1 Start 219: plm-reg-itk-demons-stats-2 194/439 Test #210: plm-reg-itk-similarity-stats-1 ........ Passed 0.18 sec 195/439 Test #219: plm-reg-itk-demons-stats-2 ............ Passed 0.11 sec 196/439 Test #212: plm-reg-itk-similarity-stats-2 ........ Passed 0.13 sec Start 221: plm-reg-itk-demons-diff Start 223: plm-reg-itk-demons-logd Start 225: plm-reg-itk-demons-sym-logd 197/439 Test #215: plm-reg-itk-bspline-stats-1 ........... Passed 0.24 sec Start 228: plm-bsp-mse-c-stats 198/439 Test #228: plm-bsp-mse-c-stats ................... Passed 0.17 sec Start 231: plm-bsp-mse-h-stats 199/439 Test #231: plm-bsp-mse-h-stats ................... Passed 0.19 sec 200/439 Test #221: plm-reg-itk-demons-diff ............... Passed 0.97 sec Start 234: plm-bsp-mse-k-stats Start 237: plm-bsp-mse-l-stats 201/439 Test #223: plm-reg-itk-demons-logd ............... Passed 0.98 sec 202/439 Test #225: plm-reg-itk-demons-sym-logd ........... Passed 1.12 sec 203/439 Test #234: plm-bsp-mse-k-stats ................... Passed 0.15 sec Start 240: plm-bsp-mi-c-stats Start 243: plm-bsp-mi-k-stats Start 246: plm-bsp-gm-k-stats 204/439 Test #237: plm-bsp-mse-l-stats ................... Passed 0.25 sec 205/439 Test #246: plm-bsp-gm-k-stats .................... Passed 0.11 sec 206/439 Test #240: plm-bsp-mi-c-stats .................... Passed 0.11 sec Start 248: plm-bsp-sm-multi-a Start 251: plm-bsp-openmp-stats Start 253: plm-bsp-resume 207/439 Test #243: plm-bsp-mi-k-stats .................... Passed 0.12 sec 208/439 Test #253: plm-bsp-resume ........................ Passed 0.18 sec 209/439 Test #248: plm-bsp-sm-multi-a .................... Passed 0.23 sec Start 255: plm-bsp-logfile Start 258: plm-bsp-ushort-stats Start 261: plm-bsp-double-stats 210/439 Test #251: plm-bsp-openmp-stats .................. Passed 0.34 sec 211/439 Test #258: plm-bsp-ushort-stats .................. Passed 0.11 sec Start 265: plm-bsp-char-output-stats Start 267: plm-bsp-rect 212/439 Test #261: plm-bsp-double-stats .................. Passed 0.21 sec 213/439 Test #265: plm-bsp-char-output-stats ............. Passed 0.13 sec 214/439 Test #255: plm-bsp-logfile ....................... Passed 0.34 sec Start 269: plm-bsp-regularize-none-stats Start 272: plm-bsp-regularize-analytic-stats Start 275: plm-bsp-regularize-numeric-stats 215/439 Test #267: plm-bsp-rect .......................... Passed 0.25 sec 216/439 Test #272: plm-bsp-regularize-analytic-stats ..... Passed 0.15 sec 217/439 Test #269: plm-bsp-regularize-none-stats ......... Passed 0.15 sec Start 279: plm-bsp-landmark-b-stats Start 282: plm-bsp-landmark-c-stats Start 285: plm-bsp-landmark-d-stats 218/439 Test #275: plm-bsp-regularize-numeric-stats ...... Passed 0.15 sec 219/439 Test #282: plm-bsp-landmark-c-stats .............. Passed 0.13 sec 220/439 Test #279: plm-bsp-landmark-b-stats .............. Passed 0.13 sec Start 288: plm-bsp-landmark-e-stats Start 291: plm-bsp-dcos-a-stats Start 294: plm-bsp-dcos-b-stats 221/439 Test #285: plm-bsp-landmark-d-stats .............. Passed 0.25 sec 222/439 Test #294: plm-bsp-dcos-b-stats .................. Passed 0.17 sec 223/439 Test #288: plm-bsp-landmark-e-stats .............. Passed 0.18 sec Start 297: plm-bsp-dcos-c-stats Start 300: plm-bsp-dcos-d-stats Start 303: plm-bsp-dcos-e-stats 224/439 Test #291: plm-bsp-dcos-a-stats .................. Passed 0.18 sec 225/439 Test #303: plm-bsp-dcos-e-stats .................. Passed 0.12 sec 226/439 Test #297: plm-bsp-dcos-c-stats .................. Passed 0.12 sec Start 306: plm-bsp-dcos-f-stats Start 309: plm-reg-multi-a-stats Start 312: plm-reg-multi-b-stats 227/439 Test #300: plm-bsp-dcos-d-stats .................. Passed 0.22 sec 228/439 Test #312: plm-reg-multi-b-stats ................. Passed 0.13 sec 229/439 Test #306: plm-bsp-dcos-f-stats .................. Passed 0.13 sec Start 315: plm-reg-dv-itk-translation-stats Start 324: plm-reg-process-a-stats Start 327: plm-reg-trans-a-stats 230/439 Test #309: plm-reg-multi-a-stats ................. Passed 0.18 sec 231/439 Test #324: plm-reg-process-a-stats ............... Passed 0.13 sec 232/439 Test #327: plm-reg-trans-a-stats ................. Passed 0.13 sec 233/439 Test #315: plm-reg-dv-itk-translation-stats ...... Passed 0.14 sec Start 330: plm-reg-trans-b-stats Start 333: plm-reg-trans-mi-a-stats Start 336: plm-reg-autores-a-stats Start 339: plm-reg-autores-b-stats 234/439 Test #330: plm-reg-trans-b-stats ................. Passed 0.15 sec 235/439 Test #339: plm-reg-autores-b-stats ............... Passed 0.16 sec 236/439 Test #333: plm-reg-trans-mi-a-stats .............. Passed 0.18 sec Start 344: plm-compose-a-stats Start 348: plm-compose-b-stats Start 352: plm-compose-c-stats 237/439 Test #336: plm-reg-autores-a-stats ............... Passed 0.18 sec 238/439 Test #352: plm-compose-c-stats ................... Passed 0.17 sec 239/439 Test #344: plm-compose-a-stats ................... Passed 0.17 sec Start 355: plm-resample-a-stats Start 358: plm-resample-b-stats Start 361: plm-resample-c-stats 240/439 Test #348: plm-compose-b-stats ................... Passed 0.27 sec 241/439 Test #358: plm-resample-b-stats .................. Passed 0.11 sec 242/439 Test #355: plm-resample-a-stats .................. Passed 0.12 sec Start 364: plm-scale-a-stats Start 367: plm-scale-vf-a-stats Start 369: plm-sift-a 243/439 Test #361: plm-resample-c-stats .................. Passed 0.12 sec 244/439 Test #364: plm-scale-a-stats ..................... Passed 0.20 sec Start 373: plm-thumbnail-a-stats Start 376: plm-thumbnail-b-stats 245/439 Test #367: plm-scale-vf-a-stats .................. Passed 0.22 sec 246/439 Test #373: plm-thumbnail-a-stats ................. Passed 0.21 sec Start 379: plm-thumbnail-c-stats Start 382: plm-union-stats 247/439 Test #376: plm-thumbnail-b-stats ................. Passed 0.31 sec 248/439 Test #379: plm-thumbnail-c-stats ................. Passed 0.20 sec Start 385: plm-threshold-a-stats Start 388: plm-threshold-b-stats 249/439 Test #382: plm-union-stats ....................... Passed 0.20 sec 250/439 Test #385: plm-threshold-a-stats ................. Passed 0.20 sec Start 391: plm-threshold-c-stats Start 397: plm-warp-a-stats 251/439 Test #388: plm-threshold-b-stats ................. Passed 0.31 sec 252/439 Test #391: plm-threshold-c-stats ................. Passed 0.21 sec Start 400: plm-warp-b-stats-1 Start 402: plm-warp-b-stats-2 253/439 Test #397: plm-warp-a-stats ...................... Passed 0.31 sec 254/439 Test #400: plm-warp-b-stats-1 .................... Passed 0.20 sec Start 405: plm-warp-c-stats Start 408: plm-warp-d-stats 255/439 Test #402: plm-warp-b-stats-2 .................... Passed 0.21 sec 256/439 Test #405: plm-warp-c-stats ...................... Passed 0.21 sec Start 411: plm-warp-g-stats-1 Start 414: plm-warp-h-stats-1 257/439 Test #408: plm-warp-d-stats ...................... Passed 0.31 sec 258/439 Test #411: plm-warp-g-stats-1 .................... Passed 0.23 sec Start 417: plm-warp-i-stats-1 Start 420: plm-xf-convert-b 259/439 Test #414: plm-warp-h-stats-1 .................... Passed 0.33 sec 260/439 Test #417: plm-warp-i-stats-1 .................... Passed 0.20 sec Start 424: plm-xf-convert-d-warp-1-stats Start 427: plm-xf-convert-d-warp-2-stats 261/439 Test #420: plm-xf-convert-b ...................... Passed 0.31 sec 262/439 Test #424: plm-xf-convert-d-warp-1-stats ......... Passed 0.21 sec Start 432: vf-invert-zero-1-stats Start 435: vf-invert-trans-1-stats 263/439 Test #427: plm-xf-convert-d-warp-2-stats ......... Passed 0.22 sec 264/439 Test #432: vf-invert-zero-1-stats ................ Passed 0.22 sec Start 437: wed-a Start 3: gabor-01 265/439 Test #3: gabor-01 .............................. Passed 0.09 sec 266/439 Test #435: vf-invert-trans-1-stats ............... Passed 0.31 sec Start 10: gauss-7 Start 17: gw-lung-a 267/439 Test #10: gauss-7 ............................... Passed 0.14 sec Start 18: gw-lung-b 268/439 Test #17: gw-lung-a ............................. Passed 0.34 sec Start 19: gw-lung-c 269/439 Test #18: gw-lung-b ............................. Passed 0.40 sec Start 20: ptv-1 270/439 Test #19: gw-lung-c ............................. Passed 0.30 sec 271/439 Test #20: ptv-1 ................................. Passed 0.08 sec Start 21: ptv-2 Start 28: rect-6 272/439 Test #21: ptv-2 ................................. Passed 0.13 sec Start 29: rect-7 273/439 Test #28: rect-6 ................................ Passed 0.33 sec 274/439 Test #29: rect-7 ................................ Passed 0.09 sec Start 34: rect-10-roi-2 Start 42: rect-17 275/439 Test #42: rect-17 ............................... Passed 0.09 sec 276/439 Test #34: rect-10-roi-2 ......................... Passed 0.09 sec Start 43: rect-18 Start 53: rgc-1 277/439 Test #53: rgc-1 ................................. Passed 0.09 sec 278/439 Test #43: rect-18 ............................... Passed 0.09 sec Start 59: xramp-1 Start 60: yramp-1 279/439 Test #60: yramp-1 ............................... Passed 0.09 sec 280/439 Test #59: xramp-1 ............................... Passed 0.09 sec Start 61: zramp-1 Start 66: vf-gaussian-1 281/439 Test #66: vf-gaussian-1 ......................... Passed 0.09 sec 282/439 Test #61: zramp-1 ............................... Passed 0.11 sec Start 68: vf-zero-check Start 70: vf-trans-1-check 283/439 Test #70: vf-trans-1-check ...................... Passed 0.02 sec 284/439 Test #68: vf-zero-check ......................... Passed 0.03 sec Start 72: vf-trans-2-check Start 74: vf-radial-1-check 285/439 Test #74: vf-radial-1-check ..................... Passed 0.03 sec 286/439 Test #72: vf-trans-2-check ...................... Passed 0.03 sec Start 76: bspline-c-check Start 78: bspline-g-check 287/439 Test #78: bspline-g-check ....................... Passed 0.02 sec 288/439 Test #76: bspline-c-check ....................... Passed 0.02 sec Start 80: bspline-h-check Start 82: bspline-mi-c-1-check 289/439 Test #82: bspline-mi-c-1-check .................. Passed 0.02 sec 290/439 Test #80: bspline-h-check ....................... Passed 0.03 sec Start 84: bspline-mi-c-2-check Start 86: demons-a-check 291/439 Test #86: demons-a-check ........................ Passed 0.02 sec 292/439 Test #84: bspline-mi-c-2-check .................. Passed 0.02 sec Start 89: drr-a-check Start 92: drr-b-check 293/439 Test #89: drr-a-check ........................... Passed 0.01 sec 294/439 Test #92: drr-b-check ........................... Passed 0.02 sec Start 95: drr-c-check Start 98: fdk-cpu-a-check 295/439 Test #98: fdk-cpu-a-check ....................... Passed 0.03 sec 296/439 Test #95: drr-c-check ........................... Passed 0.03 sec 297/439 Test #437: wed-a ................................. Passed 4.82 sec Start 101: fdk-cpu-d-check Start 104: landmark-warp-a-check-1 Start 106: landmark-warp-a-check-2 298/439 Test #104: landmark-warp-a-check-1 ............... Passed 0.02 sec 299/439 Test #106: landmark-warp-a-check-2 ............... Passed 0.02 sec 300/439 Test #101: fdk-cpu-d-check ....................... Passed 0.13 sec Start 109: landmark-warp-b-check-1 Start 111: landmark-warp-b-check-2 Start 114: landmark-warp-c-check-1 301/439 Test #114: landmark-warp-c-check-1 ............... Passed 0.02 sec 302/439 Test #111: landmark-warp-b-check-2 ............... Passed 0.03 sec 303/439 Test #109: landmark-warp-b-check-1 ............... Passed 0.13 sec Start 116: landmark-warp-c-check-2 Start 117: landmark-warp-d Start 120: plm-add-a-check 304/439 Test #120: plm-add-a-check ....................... Passed 0.01 sec 305/439 Test #117: landmark-warp-d ....................... Passed 0.11 sec 306/439 Test #116: landmark-warp-c-check-2 ............... Passed 0.22 sec Start 123: plm-add-b-check Start 126: plm-add-vf-a-check Start 129: plm-add-vf-b-check 307/439 Test #129: plm-add-vf-b-check .................... Passed 0.02 sec 308/439 Test #126: plm-add-vf-a-check .................... Passed 0.02 sec 309/439 Test #123: plm-add-b-check ....................... Passed 0.13 sec Start 132: plm-boundary-a-check Start 135: plm-convert-dicom-a-check Start 136: plm-convert-dicom-b 310/439 Test #135: plm-convert-dicom-a-check ............. Passed 0.11 sec 311/439 Test #132: plm-boundary-a-check .................. Passed 0.21 sec Start 139: plm-convert-dicom-c-check Start 140: plm-convert-dicom-d 312/439 Test #136: plm-convert-dicom-b ................... Passed 0.22 sec 313/439 Test #139: plm-convert-dicom-c-check ............. Passed 0.21 sec Start 141: plm-convert-dicom-e Start 142: plm-convert-dicom-f 314/439 Test #140: plm-convert-dicom-d ................... Passed 0.33 sec 315/439 Test #141: plm-convert-dicom-e ................... Passed 0.21 sec Start 145: plm-convert-dicom-donut-a-check Start 148: plm-convert-dicom-donut-b-check 316/439 Test #142: plm-convert-dicom-f ................... Passed 0.22 sec 317/439 Test #148: plm-convert-dicom-donut-b-check ....... Passed 0.01 sec 318/439 Test #145: plm-convert-dicom-donut-a-check ....... Passed 0.12 sec Start 149: plm-convert-dicom-donut-c Start 152: plm-convert-cxt-check Start 153: plm-convert-prefix-fcsv 319/439 Test #152: plm-convert-cxt-check ................. Passed 0.11 sec 320/439 Test #149: plm-convert-dicom-donut-c ............. Passed 0.22 sec Start 156: plm-convert-dose-scale-check Start 158: plm-dice-a-check-1 321/439 Test #158: plm-dice-a-check-1 .................... Passed 0.10 sec 322/439 Test #156: plm-convert-dose-scale-check .......... Passed 0.20 sec Start 160: plm-dice-b-check-1 Start 162: plm-dice-c-check-1 323/439 Test #153: plm-convert-prefix-fcsv ............... Passed 0.42 sec 324/439 Test #162: plm-dice-c-check-1 .................... Passed 0.02 sec 325/439 Test #160: plm-dice-b-check-1 .................... Passed 0.12 sec Start 163: plm-dice-c-check-2 Start 164: plm-dmap-a Start 165: plm-dmap-b 326/439 Test #164: plm-dmap-a ............................ Passed 0.11 sec 327/439 Test #163: plm-dice-c-check-2 .................... Passed 0.23 sec Start 167: plm-dvh-a-check-1 Start 168: plm-dvh-a-check-2 328/439 Test #165: plm-dmap-b ............................ Passed 0.21 sec 329/439 Test #168: plm-dvh-a-check-2 ..................... Passed 0.02 sec 330/439 Test #167: plm-dvh-a-check-1 ..................... Passed 0.12 sec Start 170: plm-dvh-b-check-1 Start 171: plm-dvh-b-check-2 Start 174: plm-fill-a-check 331/439 Test #174: plm-fill-a-check ...................... Passed 0.03 sec 332/439 Test #171: plm-dvh-b-check-2 ..................... Passed 0.03 sec 333/439 Test #170: plm-dvh-b-check-1 ..................... Passed 0.13 sec Start 177: plm-mask-a-check Start 180: plm-gamma-a-check Start 183: plm-gamma-b-check 334/439 Test #183: plm-gamma-b-check ..................... Passed 0.02 sec 335/439 Test #180: plm-gamma-a-check ..................... Passed 0.03 sec 336/439 Test #177: plm-mask-a-check ...................... Passed 0.14 sec Start 185: plm-gamma-c-check Start 187: plm-gamma-d-check Start 190: plm-maximum-a-check 337/439 Test #190: plm-maximum-a-check ................... Passed 0.01 sec 338/439 Test #187: plm-gamma-d-check ..................... Passed 0.03 sec 339/439 Test #185: plm-gamma-c-check ..................... Passed 0.03 sec Start 193: plm-multiply-a-check Start 196: plm-multiply-vf-a-check Start 197: plm-usage 340/439 Test #197: plm-usage ............................. Passed 0.11 sec 341/439 Test #196: plm-multiply-vf-a-check ............... Passed 0.12 sec 342/439 Test #193: plm-multiply-a-check .................. Passed 0.12 sec Start 200: plm-reg-align-center-check Start 203: plm-reg-itk-translation-check Start 206: plm-reg-itk-rigid-a-check-1 343/439 Test #206: plm-reg-itk-rigid-a-check-1 ........... Passed 0.01 sec 344/439 Test #203: plm-reg-itk-translation-check ......... Passed 0.04 sec 345/439 Test #200: plm-reg-align-center-check ............ Passed 0.04 sec Start 208: plm-reg-itk-rigid-a-check-2 Start 211: plm-reg-itk-similarity-check-1 Start 213: plm-reg-itk-similarity-check-2 346/439 Test #213: plm-reg-itk-similarity-check-2 ........ Passed 0.02 sec 347/439 Test #211: plm-reg-itk-similarity-check-1 ........ Passed 0.03 sec 348/439 Test #208: plm-reg-itk-rigid-a-check-2 ........... Passed 0.03 sec Start 216: plm-reg-itk-bspline-check-1 Start 218: plm-reg-itk-demons-check-1 Start 220: plm-reg-itk-demons-check-2 349/439 Test #220: plm-reg-itk-demons-check-2 ............ Passed 0.02 sec 350/439 Test #218: plm-reg-itk-demons-check-1 ............ Passed 0.02 sec 351/439 Test #216: plm-reg-itk-bspline-check-1 ........... Passed 0.02 sec Start 222: plm-reg-itk-demons-diff-check-1 Start 224: plm-reg-itk-demons-logd-check-1 Start 226: plm-reg-itk-demons-sym-logd-check-1 352/439 Test #226: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.04 sec 353/439 Test #224: plm-reg-itk-demons-logd-check-1 ....... Passed 0.04 sec 354/439 Test #222: plm-reg-itk-demons-diff-check-1 ....... Passed 0.05 sec Start 229: plm-bsp-mse-c-check Start 232: plm-bsp-mse-h-check Start 235: plm-bsp-mse-k-check 355/439 Test #235: plm-bsp-mse-k-check ................... Passed 0.02 sec 356/439 Test #232: plm-bsp-mse-h-check ................... Passed 0.03 sec 357/439 Test #229: plm-bsp-mse-c-check ................... Passed 0.03 sec Start 238: plm-bsp-mse-l-check Start 241: plm-bsp-mi-c-check Start 244: plm-bsp-mi-k-check 358/439 Test #244: plm-bsp-mi-k-check .................... Passed 0.02 sec 359/439 Test #241: plm-bsp-mi-c-check .................... Passed 0.02 sec 360/439 Test #238: plm-bsp-mse-l-check ................... Passed 0.02 sec Start 247: plm-bsp-gm-k-check Start 249: plm-bsp-sm-multi-a-stats Start 252: plm-bsp-openmp-check 361/439 Test #252: plm-bsp-openmp-check .................. Passed 0.02 sec 362/439 Test #249: plm-bsp-sm-multi-a-stats .............. Passed 0.12 sec 363/439 Test #247: plm-bsp-gm-k-check .................... Passed 0.13 sec Start 254: plm-bsp-resume-stats Start 256: plm-bsp-logfile-check Start 259: plm-bsp-ushort-check 364/439 Test #256: plm-bsp-logfile-check ................. Passed 0.02 sec 365/439 Test #259: plm-bsp-ushort-check .................. Passed 0.22 sec Start 262: plm-bsp-double-check Start 263: plm-bsp-itk-output 366/439 Test #254: plm-bsp-resume-stats .................. Passed 0.33 sec 367/439 Test #262: plm-bsp-double-check .................. Passed 0.21 sec Start 266: plm-bsp-char-output-check Start 270: plm-bsp-regularize-none-check 368/439 Test #263: plm-bsp-itk-output .................... Passed 0.21 sec 369/439 Test #270: plm-bsp-regularize-none-check ......... Passed 0.01 sec 370/439 Test #266: plm-bsp-char-output-check ............. Passed 0.12 sec Start 273: plm-bsp-regularize-analytic-check Start 276: plm-bsp-regularize-numeric-check Start 277: plm-bsp-landmark-a 371/439 Test #276: plm-bsp-regularize-numeric-check ...... Passed 0.11 sec 372/439 Test #273: plm-bsp-regularize-analytic-check ..... Passed 0.22 sec Start 280: plm-bsp-landmark-b-check Start 283: plm-bsp-landmark-c-check 373/439 Test #277: plm-bsp-landmark-a .................... Passed 0.23 sec 374/439 Test #283: plm-bsp-landmark-c-check .............. Passed 0.02 sec 375/439 Test #280: plm-bsp-landmark-b-check .............. Passed 0.13 sec Start 286: plm-bsp-landmark-d-check Start 289: plm-bsp-landmark-e-check Start 292: plm-bsp-dcos-a-check 376/439 Test #292: plm-bsp-dcos-a-check .................. Passed 0.02 sec 377/439 Test #289: plm-bsp-landmark-e-check .............. Passed 0.04 sec 378/439 Test #286: plm-bsp-landmark-d-check .............. Passed 0.14 sec Start 295: plm-bsp-dcos-b-check Start 298: plm-bsp-dcos-c-check Start 301: plm-bsp-dcos-d-check 379/439 Test #301: plm-bsp-dcos-d-check .................. Passed 0.01 sec 380/439 Test #298: plm-bsp-dcos-c-check .................. Passed 0.02 sec 381/439 Test #295: plm-bsp-dcos-b-check .................. Passed 0.12 sec Start 304: plm-bsp-dcos-e-check Start 307: plm-bsp-dcos-f-check Start 310: plm-reg-multi-a-check 382/439 Test #310: plm-reg-multi-a-check ................. Passed 0.02 sec 383/439 Test #307: plm-bsp-dcos-f-check .................. Passed 0.03 sec 384/439 Test #304: plm-bsp-dcos-e-check .................. Passed 0.14 sec Start 313: plm-reg-multi-b-check Start 316: plm-reg-dv-itk-translation-check Start 317: plm-reg-roi-a 385/439 Test #316: plm-reg-dv-itk-translation-check ...... Passed 0.11 sec 386/439 Test #313: plm-reg-multi-b-check ................. Passed 0.22 sec Start 318: plm-reg-roi-b Start 319: plm-reg-roi-c 387/439 Test #319: plm-reg-roi-c ......................... Passed 0.20 sec 388/439 Test #318: plm-reg-roi-b ......................... Passed 0.31 sec Start 320: plm-reg-roi-d Start 321: plm-reg-roi-e 389/439 Test #317: plm-reg-roi-a ......................... Passed 0.52 sec Start 322: plm-reg-stiffness-a 390/439 Test #320: plm-reg-roi-d ......................... Passed 0.61 sec Start 325: plm-reg-process-a-check 391/439 Test #321: plm-reg-roi-e ......................... Passed 0.72 sec 392/439 Test #325: plm-reg-process-a-check ............... Passed 0.20 sec Start 328: plm-reg-trans-a-check Start 331: plm-reg-trans-b-check 393/439 Test #322: plm-reg-stiffness-a ................... Passed 0.52 sec 394/439 Test #331: plm-reg-trans-b-check ................. Passed 0.01 sec 395/439 Test #328: plm-reg-trans-a-check ................. Passed 0.11 sec Start 334: plm-reg-trans-mi-a-check Start 337: plm-reg-autores-a-check Start 340: plm-reg-autores-b-check 396/439 Test #340: plm-reg-autores-b-check ............... Passed 0.01 sec 397/439 Test #337: plm-reg-autores-a-check ............... Passed 0.01 sec 398/439 Test #334: plm-reg-trans-mi-a-check .............. Passed 0.11 sec Start 343: plm-compose-a-warp Start 345: plm-compose-a-check Start 347: plm-compose-b-warp 399/439 Test #345: plm-compose-a-check ................... Passed 0.10 sec 400/439 Test #343: plm-compose-a-warp .................... Passed 0.20 sec Start 349: plm-compose-b-check Start 351: plm-compose-c-warp 401/439 Test #347: plm-compose-b-warp .................... Passed 0.20 sec 402/439 Test #349: plm-compose-b-check ................... Passed 0.20 sec Start 353: plm-compose-c-check Start 356: plm-resample-a-check 403/439 Test #356: plm-resample-a-check .................. Passed 0.02 sec 404/439 Test #351: plm-compose-c-warp .................... Passed 0.22 sec 405/439 Test #353: plm-compose-c-check ................... Passed 0.12 sec Start 359: plm-resample-b-check Start 362: plm-resample-c-check Start 365: plm-scale-a-check 406/439 Test #365: plm-scale-a-check ..................... Passed 0.01 sec 407/439 Test #362: plm-resample-c-check .................. Passed 0.02 sec 408/439 Test #359: plm-resample-b-check .................. Passed 0.12 sec Start 368: plm-scale-vf-a-check Start 374: plm-thumbnail-a-check Start 377: plm-thumbnail-b-check 409/439 Test #377: plm-thumbnail-b-check ................. Passed 0.02 sec 410/439 Test #374: plm-thumbnail-a-check ................. Passed 0.02 sec 411/439 Test #368: plm-scale-vf-a-check .................. Passed 0.12 sec Start 380: plm-thumbnail-c-check Start 383: plm-union-check Start 386: plm-threshold-a-check 412/439 Test #383: plm-union-check ....................... Passed 0.02 sec 413/439 Test #380: plm-thumbnail-c-check ................. Passed 0.03 sec 414/439 Test #386: plm-threshold-a-check ................. Passed 0.11 sec Start 389: plm-threshold-b-check Start 392: plm-threshold-c-check Start 393: plm-warp-pointset-a 415/439 Test #393: plm-warp-pointset-a ................... Passed 0.09 sec 416/439 Test #392: plm-threshold-c-check ................. Passed 0.10 sec 417/439 Test #389: plm-threshold-b-check ................. Passed 0.20 sec Start 394: plm-warp-pointset-b Start 395: plm-warp-pointset-c Start 398: plm-warp-a-check 418/439 Test #398: plm-warp-a-check ...................... Passed 0.02 sec 419/439 Test #395: plm-warp-pointset-c ................... Passed 0.09 sec 420/439 Test #394: plm-warp-pointset-b ................... Passed 0.19 sec Start 401: plm-warp-b-check-1 Start 403: plm-warp-b-check-2 Start 406: plm-warp-c-check 421/439 Test #406: plm-warp-c-check ...................... Passed 0.03 sec 422/439 Test #403: plm-warp-b-check-2 .................... Passed 0.03 sec 423/439 Test #401: plm-warp-b-check-1 .................... Passed 0.13 sec Start 409: plm-warp-d-check Start 412: plm-warp-g-check-1 Start 415: plm-warp-h-check-1 424/439 Test #415: plm-warp-h-check-1 .................... Passed 0.02 sec 425/439 Test #412: plm-warp-g-check-1 .................... Passed 0.03 sec 426/439 Test #409: plm-warp-d-check ...................... Passed 0.13 sec Start 418: plm-warp-i-check-1 Start 421: plm-xf-convert-c Start 425: plm-xf-convert-d-warp-1-check 427/439 Test #425: plm-xf-convert-d-warp-1-check ......... Passed 0.02 sec 428/439 Test #421: plm-xf-convert-c ...................... Passed 0.09 sec 429/439 Test #418: plm-warp-i-check-1 .................... Passed 0.19 sec Start 428: plm-xf-convert-d-warp-2-check Start 429: plm-xf-convert-e Start 430: plm-xf-convert-f 430/439 Test #429: plm-xf-convert-e ...................... Passed 0.15 sec 431/439 Test #428: plm-xf-convert-d-warp-2-check ......... Passed 0.25 sec Start 433: vf-invert-zero-1-check Start 436: vf-invert-trans-1-check 432/439 Test #430: plm-xf-convert-f ...................... Passed 0.26 sec 433/439 Test #436: vf-invert-trans-1-check ............... Passed 0.02 sec 434/439 Test #433: vf-invert-zero-1-check ................ Passed 0.12 sec Start 438: wed-b Start 439: wed-c 435/439 Test #439: wed-c ................................. Passed 1.21 sec 436/439 Test #438: wed-b ................................. Passed 2.75 sec 437/439 Test #369: plm-sift-a ............................ Passed 21.06 sec Start 370: plm-sift-a-check-1 Start 371: plm-sift-a-check-2 438/439 Test #370: plm-sift-a-check-1 .................... Passed 0.01 sec 439/439 Test #371: plm-sift-a-check-2 .................... Passed 0.02 sec 100% tests passed, 0 tests failed out of 439 Total Test time (real) = 42.71 sec make[2]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[1]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1' dh_auto_install cd obj-i686-linux-gnu && make -j4 install DESTDIR=/<>/plastimatch-1.6.6\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' /usr/bin/cmake -H/<>/plastimatch-1.6.6+dfsg.1 -B/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/CMakeFiles /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/depend make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/libs/liblbfgs-1.9 /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9 /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/libs/devillard /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/devillard /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/libs/specfun /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/specfun/CMakeFiles/specfun.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/libs/inih-r29 /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/inih-r29 /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/inih-r29/CMakeFiles/inih.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'libs/devillard/CMakeFiles/devillard.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'libs/inih-r29/CMakeFiles/inih.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'libs/specfun/CMakeFiles/specfun.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 0%] Built target lbfgs [ 0%] Built target devillard make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/libs/nkidecompress /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/DependInfo.cmake --color= [ 1%] Built target specfun make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/sys /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend [ 2%] Built target inih make -f src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/clp /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'libs/nkidecompress/CMakeFiles/nkidecompress.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/clp/CMakeFiles/plmclp.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 3%] Built target nkidecompress make -f src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/build.make src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/depend make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/sys/CMakeFiles/plmsys.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/raw_to_mha.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 4%] Built target plmclp [ 8%] Built target plmsys make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/depend make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/build.make src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/build [ 8%] Built target raw_to_mha make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/mha_to_raw.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 8%] Built target mha_to_raw make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/base /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/base/CMakeFiles/plmbase.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 41%] Built target plmbase make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/util /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/util/CMakeFiles/plmutil.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/util/CMakeFiles/plmutil.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 50%] Built target plmutil make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/depend make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/depend make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/reconstruct /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/dose /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/register /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build [ 51%] Built target plmreconstruct make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/dose/CMakeFiles/plmdose.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 55%] Built target plmdose make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/register/CMakeFiles/plmregister.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 70%] Built target plmregister make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/segment /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/segment/CMakeFiles/plmsegment.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/segment/CMakeFiles/plmsegment.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 74%] Built target plmsegment make -f src/plastimatch/cli/CMakeFiles/landmark_warp.dir/build.make src/plastimatch/cli/CMakeFiles/landmark_warp.dir/depend make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/landmark_warp.dir/DependInfo.cmake --color= cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/cli /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build'. make -f src/plastimatch/cli/CMakeFiles/landmark_warp.dir/build.make src/plastimatch/cli/CMakeFiles/landmark_warp.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 74%] Built target bragg_curve make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend [ 74%] Built target dicom_uid make -f src/plastimatch/standalone/CMakeFiles/fdk.dir/build.make src/plastimatch/standalone/CMakeFiles/fdk.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/fdk.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/fdk.dir/build.make src/plastimatch/standalone/CMakeFiles/fdk.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/cli/CMakeFiles/landmark_warp.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/fdk.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Built target landmark_warp make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build [ 75%] Built target hnd_to_pfm make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend [ 75%] Built target fdk make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Built target landmark_diff make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/sobp.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 75%] Built target sobp make -f src/plastimatch/standalone/CMakeFiles/vf_invert.dir/build.make src/plastimatch/standalone/CMakeFiles/vf_invert.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/vf_invert.dir/DependInfo.cmake --color= [ 76%] Built target dicom_info make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend [ 77%] Built target compute_distance make -f src/plastimatch/standalone/CMakeFiles/group_add.dir/build.make src/plastimatch/standalone/CMakeFiles/group_add.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/group_add.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/cli/CMakeFiles/plastimatch.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/vf_invert.dir/build.make src/plastimatch/standalone/CMakeFiles/vf_invert.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build [ 89%] Built target plastimatch make -f src/plastimatch/standalone/CMakeFiles/drr.dir/build.make src/plastimatch/standalone/CMakeFiles/drr.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/drr.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/drr.dir/build.make src/plastimatch/standalone/CMakeFiles/drr.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/group_add.dir/build.make src/plastimatch/standalone/CMakeFiles/group_add.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/vf_invert.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 89%] Built target vf_invert make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/drr.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/filter.dir/build.make src/plastimatch/standalone/CMakeFiles/filter.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/filter.dir/DependInfo.cmake --color= [ 90%] Built target xvi_archive make -f src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/build.make src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/depend [ 91%] Built target drr make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/group_add.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/filter.dir/build.make src/plastimatch/standalone/CMakeFiles/filter.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= [ 92%] Built target group_add make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend make -f src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/build.make src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/cmd_prompt_launcher.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/filter.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 92%] Built target cmd_prompt_launcher make -f src/plastimatch/standalone/CMakeFiles/bspline.dir/build.make src/plastimatch/standalone/CMakeFiles/bspline.dir/depend make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/bspline.dir/DependInfo.cmake --color= [ 93%] Built target filter make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bspline.dir/build.make src/plastimatch/standalone/CMakeFiles/bspline.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/wed.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 94%] Built target merge_vfs make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/bspline.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 95%] Built target wed make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend [ 96%] Built target bspline make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' cd /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.6.6+dfsg.1 /<>/plastimatch-1.6.6+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/demons.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/check_grad.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build [ 97%] Built target demons [ 98%] Built target check_grad make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [ 99%] Built target dlib_train make[4]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' [100%] Built target shuffle_mha make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELEASE" -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/share/doc/plastimatch/README.TXT -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/share/doc/plastimatch/COPYRIGHT.TXT -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/liblbfgs.a -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libdevillard.a -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libinih.a -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libspecfun.a -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libnkidecompress.a -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmbase.so.1.6 -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmbase.so -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_dicom_load.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_dicom_save.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_scale.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_fill.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmsys.so.1.6 -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmsys.so -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmutil.so.1.6 -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmutil.so -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/bin/plastimatch -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/bin/landmark_warp -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmdose.so.1.6 -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmdose.so -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmreconstruct.so.1.6 -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmreconstruct.so -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmregister.so.1.6 -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmregister.so -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmsegment.so.1.6 -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libplmsegment.so -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/bin/drr -- Installing: /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/bin/fdk make[2]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1/obj-i686-linux-gnu' rm -rfv /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/*.a removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libdevillard.a' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libinih.a' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/liblbfgs.a' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libnkidecompress.a' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/libspecfun.a' rm -rfv /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake' removed directory '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch' removed directory '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/lib/cmake' rm -rfv /<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_dicom_save.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_scale.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_dicom_load.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_fill.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h' removed '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h' removed directory '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include/plastimatch' removed directory '/<>/plastimatch-1.6.6+dfsg.1/debian/plastimatch/usr/include' make[1]: Leaving directory '/<>/plastimatch-1.6.6+dfsg.1' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing plastimatch-dbgsym (in debian/.debhelper/plastimatch/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing plastimatch (in debian/plastimatch); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/plastimatch/dbgsym-root/DEBIAN/control, package plastimatch-dbgsym, directory debian/.debhelper/plastimatch/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package plastimatch-dbgsym ... pkgstripfiles: processing control file: debian/plastimatch/DEBIAN/control, package plastimatch, directory debian/plastimatch pkgstripfiles: No PNG files. dpkg-deb: building package 'plastimatch-dbgsym' in 'debian/.debhelper/scratch-space/build-plastimatch/plastimatch-dbgsym_1.6.6+dfsg.1-1_i386.deb'. pkgstripfiles: Truncating usr/share/doc/plastimatch/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package plastimatch ... pkgstripfiles: No PNG files. dpkg-deb: building package 'plastimatch' in '../plastimatch_1.6.6+dfsg.1-1_i386.deb'. Renaming plastimatch-dbgsym_1.6.6+dfsg.1-1_i386.deb to plastimatch-dbgsym_1.6.6+dfsg.1-1_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../plastimatch_1.6.6+dfsg.1-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build plastimatch-1.6.6+dfsg.1 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171103-0055 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ plastimatch_1.6.6+dfsg.1-1_i386.changes: ---------------------------------------- Format: 1.8 Date: Wed, 11 Oct 2017 12:48:13 -0400 Source: plastimatch Binary: plastimatch Architecture: i386 Version: 1.6.6+dfsg.1-1 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Gregory C. Sharp Description: plastimatch - medical image reconstruction and registration Changes: plastimatch (1.6.6+dfsg.1-1) unstable; urgency=medium . [ Gregory C. Sharp ] * New upstream release * Update watch file for new gitlab naming scheme * Remove obsolete patches . [ Andreas Tille ] * Standards-Version: 4.1.1 * d/copyright: Drop paragraphs of removed libraries Checksums-Sha1: 4801779f69124ce269d591a461affa6b286337bf 42141692 plastimatch-dbgsym_1.6.6+dfsg.1-1_i386.ddeb 0d5e3e4be12ced1bc64d6aa1fae83c72c5007f1b 8264 plastimatch_1.6.6+dfsg.1-1_i386.buildinfo 32cf0e1e9e3fa5e51b61da609676fe3c9d1da53d 2597136 plastimatch_1.6.6+dfsg.1-1_i386.deb Checksums-Sha256: ee20c77041da8eaf98e2ade9244f81585d0a3a869559a4432b94c071bb69eca4 42141692 plastimatch-dbgsym_1.6.6+dfsg.1-1_i386.ddeb 1cff1630271ea260eb8fa1c32fedfd12bfe94f0aa93f7dacec14bcf037cde16f 8264 plastimatch_1.6.6+dfsg.1-1_i386.buildinfo 892cefc652955ab7ac949448d530db52f7e5a94e116775fe854d694db04e4b22 2597136 plastimatch_1.6.6+dfsg.1-1_i386.deb Files: 24e44edbe4d51e7ceae1a9290b07a071 42141692 debug optional plastimatch-dbgsym_1.6.6+dfsg.1-1_i386.ddeb c1f03eeff8779167c088d9bc4a4d2716 8264 science optional plastimatch_1.6.6+dfsg.1-1_i386.buildinfo 6bf867420584dac4c2930cd35421bafd 2597136 science optional plastimatch_1.6.6+dfsg.1-1_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ plastimatch_1.6.6+dfsg.1-1_i386.deb ----------------------------------- new debian package, version 2.0. size 2597136 bytes: control archive=2036 bytes. 2212 bytes, 39 lines control 1270 bytes, 20 lines md5sums 202 bytes, 7 lines shlibs 75 bytes, 2 lines triggers Package: plastimatch Version: 1.6.6+dfsg.1-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 13685 Depends: libblas3 | libblas.so.3, libc6 (>= 2.7), libdcmtk12, libdlib18, libfftw3-double3 (>= 3.3.5), libgcc1 (>= 1:4.0), libgdcm2.8, libgomp1 (>= 4.9), libinsighttoolkit4.12 (>= 4.12.0-dfsg1-2~), liblapack3 | liblapack.so.3, libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://plastimatch.org Description: medical image reconstruction and registration Plastimatch is an open source software for deformable image registration. It is designed for high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography(PET). Software features include: * B-spline method for deformable image registration (GPU and multicore accelerated), including support for image masking, landmark penalties, and regularization * Demons method for deformable image registration (GPU accelerated) * Multi-atlas segmentation * ITK-based algorithms for translation, rigid, affine, multiple demons methods, and B-spline registration * Pipelined, multi-stage registration framework with seamless conversion between most algorithms and transform types * Landmark-based deformable registration using thinplate splines for global registration * Landmark-based deformable registration using radial basis functions for local corrections * Broad support for 3D image file formats (using ITK), including DICOM, Nifti, NRRD, MetaImage, and Analyze * Extensive toolchain for radiotherapy research, including support for DICOM, DICOM-RT, DICOM SRO, XiO file format, gamma analysis, contour manipulation, contour overlap analysis, and vector field analysis Plastimatch also features two handy utilities which are not directly related to image registration: * FDK cone-beam CT reconstruction (GPU and multicore accelerated) * Digitally reconstructed radiograph (DRR) generation (GPU and multicore accelerated) drwxr-xr-x root/root 0 2017-10-11 16:48 ./ drwxr-xr-x root/root 0 2017-10-11 16:48 ./usr/ drwxr-xr-x root/root 0 2017-10-11 16:48 ./usr/bin/ -rwxr-xr-x root/root 17828 2017-10-11 16:48 ./usr/bin/drr -rwxr-xr-x root/root 9636 2017-10-11 16:48 ./usr/bin/fdk -rwxr-xr-x root/root 206404 2017-10-11 16:48 ./usr/bin/landmark_warp -rwxr-xr-x root/root 1541696 2017-10-11 16:48 ./usr/bin/plastimatch drwxr-xr-x root/root 0 2017-10-11 16:48 ./usr/lib/ lrwxrwxrwx root/root 0 2017-10-11 16:48 ./usr/lib/libplmbase.so -> libplmbase.so.1.6 -rw-r--r-- root/root 6578112 2017-10-11 16:48 ./usr/lib/libplmbase.so.1.6 lrwxrwxrwx root/root 0 2017-10-11 16:48 ./usr/lib/libplmdose.so -> libplmdose.so.1.6 -rw-r--r-- root/root 238976 2017-10-11 16:48 ./usr/lib/libplmdose.so.1.6 lrwxrwxrwx root/root 0 2017-10-11 16:48 ./usr/lib/libplmreconstruct.so -> libplmreconstruct.so.1.6 -rw-r--r-- root/root 25916 2017-10-11 16:48 ./usr/lib/libplmreconstruct.so.1.6 lrwxrwxrwx root/root 0 2017-10-11 16:48 ./usr/lib/libplmregister.so -> libplmregister.so.1.6 -rw-r--r-- root/root 1852880 2017-10-11 16:48 ./usr/lib/libplmregister.so.1.6 lrwxrwxrwx root/root 0 2017-10-11 16:48 ./usr/lib/libplmsegment.so -> libplmsegment.so.1.6 -rw-r--r-- root/root 1582640 2017-10-11 16:48 ./usr/lib/libplmsegment.so.1.6 lrwxrwxrwx root/root 0 2017-10-11 16:48 ./usr/lib/libplmsys.so -> libplmsys.so.1.6 -rw-r--r-- root/root 83312 2017-10-11 16:48 ./usr/lib/libplmsys.so.1.6 lrwxrwxrwx root/root 0 2017-10-11 16:48 ./usr/lib/libplmutil.so -> libplmutil.so.1.6 -rw-r--r-- root/root 1808016 2017-10-11 16:48 ./usr/lib/libplmutil.so.1.6 drwxr-xr-x root/root 0 2017-10-11 16:48 ./usr/share/ drwxr-xr-x root/root 0 2017-10-11 16:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-10-11 16:48 ./usr/share/doc/plastimatch/ -rw-r--r-- root/root 969 2017-10-11 16:11 ./usr/share/doc/plastimatch/COPYRIGHT.TXT -rw-r--r-- root/root 1014 2017-10-11 16:11 ./usr/share/doc/plastimatch/README.TXT -rw-r--r-- root/root 1511 2017-10-11 16:48 ./usr/share/doc/plastimatch/changelog.Debian.gz -rw-r--r-- root/root 11814 2017-10-11 16:48 ./usr/share/doc/plastimatch/copyright drwxr-xr-x root/root 0 2017-10-11 16:48 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-10-11 16:48 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 91 2017-10-11 16:48 ./usr/share/lintian/overrides/plastimatch drwxr-xr-x root/root 0 2017-10-11 16:48 ./usr/share/man/ drwxr-xr-x root/root 0 2017-10-11 16:48 ./usr/share/man/man1/ -rw-r--r-- root/root 2421 2017-10-11 16:48 ./usr/share/man/man1/drr.1.gz -rw-r--r-- root/root 1947 2017-10-11 16:48 ./usr/share/man/man1/fdk.1.gz -rw-r--r-- root/root 1525 2017-10-11 16:48 ./usr/share/man/man1/landmark_warp.1.gz -rw-r--r-- root/root 15152 2017-10-11 16:48 ./usr/share/man/man1/plastimatch.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 821300 Build-Time: 824 Distribution: bionic-proposed Host Architecture: i386 Install-Time: 46 Job: plastimatch_1.6.6+dfsg.1-1.dsc Machine Architecture: amd64 Package: plastimatch Package-Time: 872 Source-Version: 1.6.6+dfsg.1-1 Space: 821300 Status: successful Version: 1.6.6+dfsg.1-1 -------------------------------------------------------------------------------- Finished at 20171103-0055 Build needed 00:14:32, 821300k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13660575 Scanning for processes to kill in build PACKAGEBUILD-13660575 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13660575 Stopping target for build PACKAGEBUILD-13660575 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=i386 PACKAGEBUILD-13660575 Removing build PACKAGEBUILD-13660575