ncbi-tools6 6.1.20110713-2 source package in Ubuntu
Changelog
ncbi-tools6 (6.1.20110713-2) unstable; urgency=low
* api/alignmgr2.c, api/pgppop.c, api/txalign.c, desktop/seqpanel.c,
tools/spidey.c: avoid calling printf and the like with non-constant
strings, as caught by -Werror=format-security. (Closes: #643444.)
ncbi-tools6 (6.1.20110713-1) unstable; urgency=low
* New upstream release.
* debian/*.symbols: update accordingly.
* make/makeshlb.unx: link libcn3dOGL.so against -lm for sqrt.
* doc/man/*.1: update for new release.
* debian/rules:
- (VIB): add asnmacro, as upstream takes care to publish binaries thereof.
- Retire obsolete multiarch-unaware checks for libpthread.
- Fully modernize Debhelper usage; in particular, transition to overrides.
* debian/compat: advance to 9 per rules modernization.
* debian/ncbi-tools-bin.install: add asnmacro.
* make/makenet.unx: link asnmacro only against libraries it directly needs.
* doc/man/asnmacro.1: give asnmacro a man page.
* doc/man/Psequin.1: list it in SEE ALSO.
* network/id1arch/idfetch.c: revert redundant change (from #295110).
* Convert to multiarch.
- debian/rules: Install libraries (and ncbithr.o) to multiarch directories.
- debian/lib*.install: match multiarch library paths.
- debian/control:
+ Build-Depends: debhelper (>= 8.1.3~), implying a recent dpkg-dev.
+ Set Multi-Arch: as appropriate across the board, and specify
Pre-Depends: ${misc:Pre-Depends} for runtime libraries.
* debian/*.lintian-overrides: drop leading slashes for Lintian 2.5.x.
* debian/control: Standards-Version: 3.9.2 (already compliant).
ncbi-tools6 (6.1.20100808-3) unstable; urgency=low
* vibrant/shim3d.c: support libpng 1.5+, per Nobuhiro Iwamatsu's most
helpful patch. (Closes: #636006.)
-- Ubuntu Archive Auto-Sync <email address hidden> Mon, 17 Oct 2011 13:41:49 +0000
Upload details
- Uploaded by:
- Ubuntu Archive Auto-Sync
- Uploaded to:
- Precise
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- oldlibs
- Urgency:
- Low Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| ncbi-tools6_6.1.20110713.orig.tar.gz | 65.4 MiB | eb269af6ca271a8df770ac221b9e993f16870f533ba4d0611b26820e8f65fd2b |
| ncbi-tools6_6.1.20110713-2.diff.gz | 129.4 KiB | 3acccde1eb9bdb4cabc4b26b0e86d16e1028d742448387fd5efd9894d15ea070 |
| ncbi-tools6_6.1.20110713-2.dsc | 2.2 KiB | 408eb0d7c8746d3724183db544f47fa5bc10a7abba384d2a0d983af14765091e |
Available diffs
Binary packages built by this source
- blast2: Basic Local Alignment Search Tool
The famous sequence alignment program. This is "official" NCBI version,
#2. The blastall executable allows you to give a nucleotide or protein
sequence to the program. It is compared against databases and a summary of
matches is returned to the user.
.
Note that databases are not included in Debian; they must be retrieved
manually.
- libncbi6: NCBI libraries for biology applications
The NCBI Software Development Toolkit was developed for the production and
distribution of GenBank, Entrez, BLAST, and related services by NCBI. It
allows you to read and write NCBI ASN.1 files, builds Blast or Entrez, etc.
- libncbi6-dbg: NCBI libraries for biology applications (debugging symbols)
This package is useful to provide a backtrace with symbol names in a
debugger; this facilitates interpretation of core dumps, and aids in finding
logic errors in programs using the libraries in this package (or the
libraries themselves).
.
Non-programmers will likely have little use for this package. See the
libncbi6 package for more information.
- libncbi6-dev: NCBI libraries for biology applications (development files)
This package supplies development versions of NCBI's non-graphical C
libraries, along with the corresponding header files.
- libvibrant6-dev: NCBI libraries for graphic biology applications (development files)
Vibrant allows you to develop portable (Motif, MS-Windows, Mac-OS) graphic
biological applications.
- libvibrant6a: NCBI libraries for graphic biology applications
This is the library for those who just want to run Vibrant applications.
It also includes a wrapper (vibrate) that allows many NCBI applications to
provide a GUI for selecting options.
- libvibrant6a-dbg: NCBI libraries for graphic biology applications (unstripped)
This package is useful to provide a backtrace with symbol names in a
debugger; this facilitates interpretation of core dumps, and aids in finding
logic errors in programs using the libraries in this package (or the
libraries themselves).
.
Non-programmers will likely have little use for this package. See the
libvibrant6a package for more information.
- ncbi-data: Platform-independent data for the NCBI toolkit
This package contains support files needed by the NCBI toolkit on all
platforms.
- ncbi-rrna-data: large rRNA BLAST databases distributed with the NCBI toolkit
This package contains some ribosomal RNA BLAST databases distributed
as part of the NCBI C Toolkit that are too large and specialized to
include in ncbi-data. Specifically, it contains the databases
Combined16SrRNA_2-12- 2008, LSURef_93.fasta, and SSURef_93.fasta,
along with an alias file to facilitate searching all three of them in
conjunction with the 16SCore database included in ncbi-data.
- ncbi-tools-bin: NCBI libraries for biology applications (text-based utilities)
This package includes various utilities distributed with the NCBI C SDK,
including the development tools asntool and errhdr (formerly of
libncbi6-dev). None of the programs in this package require X; you can
find the X-based utilities in the ncbi-tools-x11 package. BLAST and
related tools are in a separate package (blast2).
- ncbi-tools-x11: NCBI libraries for biology applications (X-based utilities)
This package includes some X-based utilities distributed with the
NCBI C SDK: Cn3D, Network Entrez, Sequin, ddv, and udv. These
programs are not part of ncbi-tools-bin because they depend on
several additional library packages.
