https://launchpad.net/ubuntu/+source/ncbi-blast+/2.7.1-1/+build/14813050 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-028 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 21 Jul 18:06:47 ntpdate[1847]: adjust time server 10.211.37.1 offset -0.000312 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14813050 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-14813050 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14813050 Starting target for build PACKAGEBUILD-14813050 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14813050 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14813050 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14813050 Updating target for build PACKAGEBUILD-14813050 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1008 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8668 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5022 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [85.9 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [46.4 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [373 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [192 kB] Fetched 16.4 MB in 5s (3410 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libquadmath0 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev make mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 105 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 87.0 MB of archives. After this operation, 114 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-4ubuntu1 [84.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 debianutils i386 4.8.6 [86.1 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu2 [645 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdutils i386 1:2.32-0.1ubuntu1 [62.7 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 tar i386 1.30+dfsg-2 [265 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg i386 1.19.0.5ubuntu3 [1162 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.3-1 [186 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.3-1 [433 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-4ubuntu1 [166 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libperl5.26 i386 5.26.2-6 [3168 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 perl i386 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 perl-base i386 5.26.2-6 [1495 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 sed i386 4.5-1 [187 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libuuid1 i386 2.32-0.1ubuntu1 [20.6 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 libblkid1 i386 2.32-0.1ubuntu1 [143 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libfdisk1 i386 2.32-0.1ubuntu1 [186 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-4ubuntu1 [141 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libpcre3 i386 2:8.39-10ubuntu2 [229 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libselinux1 i386 2.8-1build1 [73.2 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 libmount1 i386 2.32-0.1ubuntu1 [152 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libsmartcols1 i386 2.32-0.1ubuntu1 [94.0 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 fdisk i386 2.32-0.1ubuntu1 [118 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 util-linux i386 2.32-0.1ubuntu1 [943 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 libquadmath0 i386 8.1.0-12ubuntu1 [208 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 libitm1 i386 8.1.0-12ubuntu1 [30.8 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-8-base i386 8.1.0-12ubuntu1 [18.6 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc1 i386 1:8.1.0-12ubuntu1 [48.1 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libmpx2 i386 8.1.0-12ubuntu1 [13.0 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libcc1-0 i386 8.1.0-12ubuntu1 [41.9 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 libatomic1 i386 8.1.0-12ubuntu1 [9616 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libgomp1 i386 8.1.0-12ubuntu1 [80.7 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++6 i386 8.1.0-12ubuntu1 [430 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 liblz4-1 i386 1.8.2-1ubuntu1 [69.2 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libudev1 i386 238-5ubuntu3 [60.0 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libapt-pkg5.0 i386 1.7.0~alpha2 [875 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 debconf all 1.5.68 [125 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 adduser all 3.117ubuntu1 [163 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgpg-error0 i386 1.32-1 [60.9 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcrypt20 i386 1.8.3-1ubuntu1 [401 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgv i386 2.2.8-1ubuntu1 [217 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libseccomp2 i386 2.3.3-3ubuntu1 [35.6 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 apt i386 1.7.0~alpha2 [1200 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libapparmor1 i386 2.12-4ubuntu6 [32.6 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit1 i386 1:2.8.3-1ubuntu2 [40.1 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-1 i386 0~20171227-0.1 [25.2 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 libcryptsetup12 i386 2:2.0.3-6ubuntu1 [156 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 libkmod2 i386 25-1ubuntu1 [48.3 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 mount i386 2.32-0.1ubuntu1 [110 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-4ubuntu1 [108 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps7 i386 2:3.3.15-2ubuntu1 [33.6 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.15-2ubuntu1 [230 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 systemd i386 238-5ubuntu3 [3023 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsystemd0 i386 238-5ubuntu3 [225 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 systemd-sysv i386 238-5ubuntu3 [13.7 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.3-1 [9492 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 libsepol1 i386 2.8-1 [276 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage-common all 2.8-1build1 [7000 B] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage1 i386 2.8-1build1 [94.3 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.3-1 [11.6 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.12-2 [184 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 libtasn1-6 i386 4.13-3 [38.8 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/universe i386 libncurses5 i386 6.1+20180210-4ubuntu1 [101 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-4ubuntu1 [128 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-4ubuntu1 [79.7 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/universe i386 libargon2-0 i386 0~20171227-0.1 [4532 B] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 readline-common all 7.0-5 [52.2 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main i386 libreadline7 i386 7.0-5 [127 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main i386 libslang2 i386 2.3.2-1ubuntu1 [426 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsqlite3-0 i386 3.24.0-1 [541 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main i386 libssl1.1 i386 1.1.0g-2ubuntu5 [1123 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main i386 openssl i386 1.1.0g-2ubuntu5 [542 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libpng16-16 i386 1.6.34-2 [184 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.31.1-1ubuntu2 [194 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.31.1-1ubuntu2 [3400 B] Get:83 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.31.1-1ubuntu2 [1985 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.31.1-1ubuntu2 [518 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp-8 i386 8.1.0-12ubuntu1 [7525 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp i386 4:8.1.0-2ubuntu1 [27.7 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main i386 libasan5 i386 8.1.0-12ubuntu1 [376 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main i386 libubsan1 i386 8.1.0-12ubuntu1 [138 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc-8-dev i386 8.1.0-12ubuntu1 [2302 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-8 i386 8.1.0-12ubuntu1 [8311 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc i386 4:8.1.0-2ubuntu1 [5268 B] Get:92 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++-8-dev i386 8.1.0-12ubuntu1 [1579 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main i386 g++-8 i386 8.1.0-12ubuntu1 [8428 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main i386 g++ i386 4:8.1.0-2ubuntu1 [1616 B] Get:95 http://ftpmaster.internal/ubuntu cosmic/main i386 make i386 4.2.1-1.1 [168 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main i386 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:99 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libasan4 i386 7.3.0-27ubuntu1 [361 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libubsan0 i386 7.3.0-27ubuntu1 [141 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcilkrts5 i386 7.3.0-27ubuntu1 [47.4 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 g++-7 i386 7.3.0-27ubuntu1 [7818 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7 i386 7.3.0-27ubuntu1 [7703 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++-7-dev i386 7.3.0-27ubuntu1 [1504 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc-7-dev i386 7.3.0-27ubuntu1 [2397 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cpp-7 i386 7.3.0-27ubuntu1 [6971 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7-base i386 7.3.0-27ubuntu1 [18.9 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.3-1 [2704 B] Get:109 http://ftpmaster.internal/ubuntu cosmic/main i386 pinentry-curses i386 1.1.0-1build2 [37.8 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main i386 libnpth0 i386 1.6-1 [8032 B] Get:111 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg i386 2.2.8-1ubuntu1 [511 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgconf i386 2.2.8-1ubuntu1 [130 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg-agent i386 2.2.8-1ubuntu1 [247 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.3-1 [2700 B] Get:115 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 linux-libc-dev i386 4.17.0-5.6 [1003 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/main i386 pkgbinarymangler all 141 [53.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.0 MB in 3s (26.5 MB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_i386.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:i386. (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_i386.deb ... Unpacking libtinfo6:i386 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:i386 (6.1+20180210-4ubuntu1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_i386.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_i386.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_i386.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_i386.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_i386.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12641 files and directories currently installed.) 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Unpacking libperl5.26:i386 (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-base_5.26.2-6_i386.deb ... Unpacking perl-base (5.26.2-6) over (5.26.1-6) ... Setting up perl-base (5.26.2-6) ... (Reading database ... 12643 files and directories currently installed.) Preparing to unpack .../archives/sed_4.5-1_i386.deb ... Unpacking sed (4.5-1) over (4.4-2) ... Setting up sed (4.5-1) ... (Reading database ... 12643 files and directories currently installed.) Preparing to unpack .../libuuid1_2.32-0.1ubuntu1_i386.deb ... Unpacking libuuid1:i386 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:i386 (2.32-0.1ubuntu1) ... (Reading database ... 12643 files and directories currently installed.) Preparing to unpack .../libblkid1_2.32-0.1ubuntu1_i386.deb ... Unpacking libblkid1:i386 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:i386 (2.32-0.1ubuntu1) ... (Reading database ... 12643 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14813050 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-14813050 --arch=i386 --dist=cosmic-proposed --nolog ncbi-blast+_2.7.1-1.dsc Initiating build PACKAGEBUILD-14813050 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-028.buildd +==============================================================================+ | ncbi-blast+ 2.7.1-1 (i386) 21 Jul 2018 18:07 | +==============================================================================+ Package: ncbi-blast+ Version: 2.7.1-1 Source Version: 2.7.1-1 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-I24T32' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14813050/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ncbi-blast+_2.7.1-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-I24T32/resolver-cZaSeJ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-I24T32/resolver-cZaSeJ/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-I24T32/resolver-cZaSeJ/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-I24T32/resolver-cZaSeJ/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-I24T32/resolver-cZaSeJ/apt_archive ./ Sources [214 B] Get:5 copy:/build/ncbi-blast+-I24T32/resolver-cZaSeJ/apt_archive ./ Packages [524 B] Fetched 2857 B in 49710d 6h 28min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-I24T32/resolver-cZaSeJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 49710d 6h 28min 15s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13715 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-I24T32/resolver-oqJTXU/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-I24T32/resolver-oqJTXU/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-I24T32/resolver-oqJTXU/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-I24T32/resolver-oqJTXU/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-I24T32/resolver-oqJTXU/apt_archive ./ Sources [272 B] Get:5 copy:/build/ncbi-blast+-I24T32/resolver-oqJTXU/apt_archive ./ Packages [590 B] Fetched 2981 B in 49710d 6h 28min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ncbi-blast+ build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.67-dev libboost-test1.67.0 libboost1.67-dev libbsd0 libbz2-dev libcroco3 libelf1 libevent-2.1-6 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dane0 libgnutls-openssl27 libgnutls28-dev libgnutlsxx28 libicu60 libidn2-0-dev libidn2-dev libmagic-mgc libmagic1 libmbedcrypto1 libmbedtls-dev libmbedtls10 libmbedx509-0 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtimedate-perl libtool libunbound2 libxml2 m4 man-db nettle-dev po-debconf time zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-doc gnutls-bin libmbedtls-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libtasn1-doc libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.67-dev libboost-test1.67.0 libboost1.67-dev libbsd0 libbz2-dev libcroco3 libelf1 libevent-2.1-6 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dane0 libgnutls-openssl27 libgnutls28-dev libgnutlsxx28 libicu60 libidn2-0-dev libidn2-dev libmagic-mgc libmagic1 libmbedcrypto1 libmbedtls-dev libmbedtls10 libmbedx509-0 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtimedate-perl libtool libunbound2 libxml2 m4 man-db nettle-dev po-debconf sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. 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Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:i386 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:i386 (0.9.1-1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7build1) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:i386 (1:5.33-3) ... Setting up libcroco3:i386 (0.6.12-2) ... Setting up libgnutlsxx28:i386 (3.5.18-1ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libboost1.67-dev:i386 (1.67.0-0ubuntu1) ... Setting up libgnutls-openssl27:i386 (3.5.18-1ubuntu1) ... Setting up libpcrecpp0v5:i386 (2:8.39-10ubuntu2) ... Setting up libpcre32-3:i386 (2:8.39-10ubuntu2) ... Setting up libmbedx509-0:i386 (2.11.0-1) ... Setting up libpcre16-3:i386 (2:8.39-10ubuntu2) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:i386 (2:6.1.2+dfsg-3) ... Setting up libidn2-dev:i386 (2.0.4-1.1build2) ... Setting up libboost-test1.67.0:i386 (1.67.0-0ubuntu1) ... Setting up libidn2-0-dev (2.0.4-1.1build2) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libgmp-dev:i386 (2:6.1.2+dfsg-3) ... Setting up libunbound2:i386 (1.7.3-1) ... Setting up libpcre3-dev:i386 (2:8.39-10ubuntu2) ... Setting up libmbedtls10:i386 (2.11.0-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libboost-test1.67-dev:i386 (1.67.0-0ubuntu1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up libmbedtls-dev:i386 (2.11.0-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libgnutls-dane0:i386 (3.5.18-1ubuntu1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up nettle-dev:i386 (3.4-1) ... Setting up libboost-test-dev:i386 (1.67.0.0ubuntu1) ... Setting up libtool (2.4.6-2.1build1) ... Setting up po-debconf (1.0.20) ... Setting up libgnutls28-dev:i386 (3.5.18-1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic amd64 (i686) Toolchain package versions: binutils_2.31.1-1ubuntu2 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-27ubuntu1 g++-8_8.1.0-12ubuntu1 gcc-7_7.3.0-27ubuntu1 gcc-8_8.1.0-12ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-27ubuntu1 libstdc++-8-dev_8.1.0-12ubuntu1 libstdc++6_8.1.0-12ubuntu1 linux-libc-dev_4.17.0-5.6 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha2 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.31.1-1ubuntu2 binutils-common_2.31.1-1ubuntu2 binutils-i686-linux-gnu_2.31.1-1ubuntu2 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:8.1.0-2ubuntu1 cpp-7_7.3.0-27ubuntu1 cpp-8_8.1.0-12ubuntu1 dash_0.5.8-2.10 debconf_1.5.68 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 g++_4:8.1.0-2ubuntu1 g++-7_7.3.0-27ubuntu1 g++-8_8.1.0-12ubuntu1 gcc_4:8.1.0-2ubuntu1 gcc-7_7.3.0-27ubuntu1 gcc-7-base_7.3.0-27ubuntu1 gcc-8_8.1.0-12ubuntu1 gcc-8-base_8.1.0-12ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu6 libapt-pkg5.0_1.7.0~alpha2 libarchive-zip-perl_1.60-1ubuntu1 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libasan4_7.3.0-27ubuntu1 libasan5_8.1.0-12ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-12ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.31.1-1ubuntu2 libblkid1_2.32-0.1ubuntu1 libboost-test-dev_1.67.0.0ubuntu1 libboost-test1.67-dev_1.67.0-0ubuntu1 libboost-test1.67.0_1.67.0-0ubuntu1 libboost1.67-dev_1.67.0-0ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-12ubuntu1 libcilkrts5_7.3.0-27ubuntu1 libcom-err2_1.44.3-1 libcomerr2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.3-6ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libelf1_0.170-0.5 libevent-2.1-6_2.1.8-stable-4build1 libext2fs2_1.44.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libgcc-7-dev_7.3.0-27ubuntu1 libgcc-8-dev_8.1.0-12ubuntu1 libgcc1_1:8.1.0-12ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp-dev_2:6.1.2+dfsg-3 libgmp10_2:6.1.2+dfsg-3 libgmpxx4ldbl_2:6.1.2+dfsg-3 libgnutls-dane0_3.5.18-1ubuntu1 libgnutls-openssl27_3.5.18-1ubuntu1 libgnutls28-dev_3.5.18-1ubuntu1 libgnutls30_3.5.18-1ubuntu1 libgnutlsxx28_3.5.18-1ubuntu1 libgomp1_8.1.0-12ubuntu1 libgpg-error0_1.32-1 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libidn2-0-dev_2.0.4-1.1build2 libidn2-dev_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-12ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmbedcrypto1_2.11.0-1 libmbedtls-dev_2.11.0-1 libmbedtls10_2.11.0-1 libmbedx509-0_2.11.0-1 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-12ubuntu1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit-dev_0.23.12-2 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre16-3_2:8.39-10ubuntu2 libpcre3_2:8.39-10ubuntu2 libpcre3-dev_2:8.39-10ubuntu2 libpcre32-3_2:8.39-10ubuntu2 libpcrecpp0v5_2:8.39-10ubuntu2 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libquadmath0_8.1.0-12ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-27ubuntu1 libstdc++-8-dev_8.1.0-12ubuntu1 libstdc++6_8.1.0-12ubuntu1 libsystemd0_238-5ubuntu3 libtasn1-6_4.13-3 libtasn1-6-dev_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1build1 libubsan0_7.3.0-27ubuntu1 libubsan1_8.1.0-12ubuntu1 libudev1_238-5ubuntu3 libunbound2_1.7.3-1 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libxml2_2.9.4+dfsg1-7build1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-5.6 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 nettle-dev_3.4-1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build2 pkgbinarymangler_141 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_238-5ubuntu3 systemd-sysv_238-5ubuntu3 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 time_1.7-25.1build1 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Feb 15 11:14:18 2018 UTC gpgv: using RSA key 78DC68DB326D8438 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.7.1-1.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.7.1 dpkg-source: info: unpacking ncbi-blast+_2.7.1.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.7.1-1.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying support_x32 dpkg-source: info: applying suppress_gnutls_version_check dpkg-source: info: applying optionally_keep_sequence dpkg-source: info: applying fix_unit_tests dpkg-source: info: applying remove_embedded_mbedtls Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14813050 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14813050 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14813050 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.7.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ncbi-blast+-2.7.1 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean # dh clean -Dc++ --with autotools_dev dh clean -Dc++ dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found make[1]: [debian/rules:108: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1' debian/rules build-arch # dh build-arch -Dc++ --with autotools_dev dh build-arch -Dc++ dh_testdir -a -O-Dc\+\+ dh_update_autotools_config -a -O-Dc\+\+ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-mbedtls --with-symbols CFLAGS_FOR_BUILD="-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" \ || (tail -v -n +0 config.log BUILD/status/config.log; exit 1) configure: loading site script ./src/build-system/config.site configure: creating cache config.cache configure: WARNING: --with(out)-dbapi is deprecated configure: WARNING: please simply pass an appropriate project list checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether /usr/bin/gcc has an option to discard unneeded shared libraries... -Wl,--as-needed checking whether /usr/bin/gcc has an option to link in whole static archives... -Wl,--whole-archive checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking for dpkg-architecture... /usr/bin/dpkg-architecture checking for gawk... no checking for mawk... mawk checking for GNU make... /usr/bin/make checking for /usr/bin/make... /usr/bin/make checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for basename... /usr/bin/basename checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking how to run /bin/grep -E quietly... /bin/grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking for uuidgen... no checking for cd_reporter... no checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... (cached) yes checking size of size_t... 4 checking for amq... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes checking how to run the C preprocessor... gcc -E checking whether cross-directory hard links work... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking iostream.h usability... no checking iostream.h presence... no checking for iostream.h... no checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking fstream.h usability... no checking fstream.h presence... no checking for fstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking strstrea.h usability... no checking strstrea.h presence... no checking for strstrea.h... no checking for inttypes.h... (cached) yes checking limits usability... yes checking limits presence... yes checking for limits... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... 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yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/sysinfo.h usability... yes checking sys/sysinfo.h presence... yes checking for sys/sysinfo.h... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking x86intrin.h usability... yes checking x86intrin.h presence... yes checking for x86intrin.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking paths.h usability... yes checking paths.h presence... yes checking for paths.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking whether time.h and sys/time.h may both be included... yes checking cxxabi.h usability... yes checking cxxabi.h presence... yes checking for cxxabi.h... yes checking whether abi::__cxa_demangle is declared... yes checking for gethostbyname_r... 6 checking for gethostbyaddr_r... 8 checking for getservbyname_r... 6 checking for getpwuid_r... 5 checking for getlogin_r... yes checking for localtime_r... yes checking for pthread_setconcurrency... yes checking for pthread_atfork... yes checking return type of localtime_r... struct checking whether pthread mutexes are available... yes checking for vprintf... yes checking for _doprnt... no checking for alarm... yes checking for asprintf... yes checking for atoll... yes checking for basename... yes checking for euidaccess... yes checking for fseeko... yes checking for fstat... yes checking for getgrouplist... yes checking for getopt... yes checking for getpagesize... yes checking for getpass... yes checking for getpassphrase... no checking for getpwuid... yes checking for getrusage... yes checking for gettimeofday... yes checking for getuid... yes checking for lchown... yes checking for lutimes... yes checking for memrchr... yes checking for putenv... yes checking for readpassphrase... no checking for readv... yes checking for select... yes checking for setenv... yes checking for statfs... yes checking for statvfs... yes checking for strcasecmp... yes checking for strdup... yes checking for strlcat... no checking for strlcpy... no checking for strndup... yes checking for strnlen... yes checking for strsep... yes checking for strtok_r... yes checking for sysmp... no checking for timegm... yes checking for usleep... yes checking for utimes... yes checking for vasprintf... yes checking for vsnprintf... yes checking for writev... yes checking return type of signal handlers... void checking whether select updates the timeout when interrupted... yes checking whether strcasecmp treats letters as lowercase... yes checking for Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking whether char is unsigned... no checking for char... yes checking size of char... 1 checking for double... yes checking size of double... 8 checking for float... yes checking size of float... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 4 checking for long double... yes checking size of long double... 12 checking for long long... yes checking size of long long... 8 checking for short... yes checking size of short... 2 checking for void*... yes checking size of void*... 4 checking for wchar_t... yes checking size of wchar_t... 4 checking for __int64... no checking size of __int64... 0 checking for intptr_t... yes checking for uintptr_t... yes checking for struct sockaddr_in.sin_len... no checking for struct tm.tm_zone... yes checking for struct tm.__tm_zone... no checking whether function prototypes can use throw(...)... yes checking for ios(_base)::register_callback... yes checking for SysV semaphores... yes checking for union semun... no checking which way the stack grows... up checking whether the preprocessor supports C99-style variadic macros... yes checking whether the preprocessor supports GNU-style variadic macros... yes checking syntax for marking deprecated functions... __attribute__((__deprecated__)) checking how to force inlining... inline __attribute__((always_inline)) checking whether the C compiler supports __attribute__((destructor))... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary checking whether the C compiler supports C99 restrict... __restrict__ checking whether the C++ compiler supports C99 restrict... __restrict__ checking syntax for marking functions that never return... __attribute__((__noreturn__)) checking syntax for marking functions whose result should be checked... __attribute__((warn_unused_result)) checking syntax for declaring thread-local variables... __thread checking syntax for marking types as packed to save memory... __attribute__((__packed__)) checking whether FIONBIO requires BSD_COMP to be defined... no checking whether INADDR_NONE is defined... yes checking whether unaligned reads are permissible... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -msse4.1... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -maes... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -fdiagnostics-color=always... yes checking whether in-house NCBI resources are available... no checking for gethostbyname in -lnsl... yes checking for connect in -lsocket... no checking for res_search in -lresolv... yes checking for inet_ntoa_r... no checking for getaddrinfo... yes checking for getnameinfo... yes checking for freehostent... no checking for gethostent_r... yes checking for getipnodebyaddr... no checking for getipnodebyname... no checking for inet_ntop... yes checking for socketpair... yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... no checking for library containing setkey... -lcrypt checking for library containing dlopen... -ldl checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... none required checking for library containing cplus_demangle... no checking for nanosleep... yes checking for pthread_condattr_setclock... yes checking for sched_yield... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for libpcre... yes checking for libmbedtls... yes checking for libgmp... yes checking for libgcrypt-config... no checking for libgcrypt... no checking for libhogweed... yes checking for libgnutls-config... no checking for libgnutls... yes checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... no checking for python2.5... no checking for python2.6... no checking for python2.7... no checking for python3... no checking for perl... /usr/bin/perl checking for usable Perl libraries... no checking Boost version... 1_67 configure: WARNING: Untested Boost version; may prove incompatible. configure: WARNING: If so, please re-run this script with the flag --without-boost. checking for Boost library name tag... -gcc80-mt-1_67 (autodetected) checking for Boost.Regex... no checking for Boost.Spirit... yes checking for Boost.System... no checking for Boost.Filesystem... no checking for Boost.Iostreams... no checking for Boost.Program-Options... no checking for Boost.Test... included-only checking for Boost.Thread... no checking for the NCBI C toolkit... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for wx-config... no checking for wxWidgets... no checking for FastCGI libraries... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories... no checking for ORBacus... no checking for ICU... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for libexslt... no checking for Xerces-C++... no checking for Xalan-C++... no checking for Zorba... no checking for libsqlite3... no checking for liboechem... no checking for libdrmaa... no checking for libmuparser... no checking for libhdf5_cpp... no checking for libjpeg... no checking for libpng... no checking for libtiff... no checking for libgif... no checking for libungif... no checking for libXpm... no checking for freetype-config... no /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/build-system/configure: 1: cd: can't cd to /sbuild-nonexistent checking for libftgl... no checking for libmagic... no checking for libmimetic... no checking for soapcpp2... no checking for wsdl2h... no checking for libgsoapssl++... no checking for libavrocpp... no checking for USC Cereal... no checking for libsasl2... no checking for libmongoclient... no checking for libmongocxx... no checking for libgmock... no checking lapacke.h usability... no checking lapacke.h presence... no checking for lapacke.h... no checking lapacke/lapacke.h usability... no checking lapacke/lapacke.h presence... no checking for lapacke/lapacke.h... no checking clapack.h usability... no checking clapack.h presence... no checking for clapack.h... no checking Accelerate/Accelerate.h usability... no checking Accelerate/Accelerate.h presence... no checking for Accelerate/Accelerate.h... no checking for liblapack... no checking for liblmdb... no configure: using local LMDB copy in util/lmdb checking for libuv... no checking for libssh2... no checking for libcassandra... no checking for libxlsxwriter... no checking for libgrpc++... no configure: looking for configurables below /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++... configure: ...done configure: updating cache config.cache configure: creating /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/status/config.status config.status: creating /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/misc/third_party/Makefile config.status: creating /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/misc/third_party_static/Makefile config.status: creating /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/misc/Makefile config.status: creating /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/objtools/seqmasks_io/Makefile config.status: creating /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/objtools/data_loaders/blastdb/Makefile config.status: creating /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/objtools/data_loaders/genbank/gicache/Makefile config.status: creating 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Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' /usr/bin/make -f /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/build-system/helpers TMPL=run_with_lock -kw all make[3]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath-link,/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib -lm -lpthread -o run_with_lock /bin/bash /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/bin /bin/ln -f run_with_lock /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/bin/run_with_lock make[3]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' make[2]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/Linux32/4.2.1/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' make[3]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.precompile): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[3] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[3] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib TMPL=corelib -w all make[4]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp: In member function 'void ncbi::CNcbiApplication::x_TryMain(ncbi::EAppDiagStream, const char*, int*, bool*)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp:460:20: warning: catching polymorphic type 'class ncbi::CArgHelpException' by value [-Wcatch-value=] catch (CArgHelpException) { ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp: In member function 'int ncbi::CNcbiApplication::AppMain(int, const char* const*, const char* const*, ncbi::EAppDiagStream, const char*, const string&)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp:792:20: warning: catching polymorphic type 'class ncbi::CArgException' by value [-Wcatch-value=] catch (CArgException) { ^~~~~~~~~~~~~ -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-s/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp: In member function 'bool ncbi::CArgDescriptions::x_CreateArg(const string&, const string&, bool, const string&, unsigned int, ncbi::CArgs&, bool, ncbi::CArgValue**) const': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:2917:12: warning: catching polymorphic type 'class ncbi::CArgException' by value [-Wcatch-value=] catch (CArgException) { ^~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp: In function 'std::__cxx11::string ncbi::s_CArgs_ReadFromConsole(const string&, ncbi::EEchoInput, const char*)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:2058:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, prompt.data(), prompt.length()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:2087:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, thx.data(), thx.length()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:854:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbiexpt.hpp:42, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:35: /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbidiag.hpp:1810:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1776:16: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1824:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1912:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1944:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In function 'bool ncbi::s_GetLogConfigBool(ncbi::CTempString, bool, ncbi::CNcbiRegistry*)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:3103:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:3244:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:37: /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:362:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'bool ncbi::SDiagMessage::x_ParseExtraArgs(const string&, size_t)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4235:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4247:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'bool ncbi::SDiagMessage::ParseMessage(const string&)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4334:20: warning: catching polymorphic type 'class ncbi::CTimeException' by value [-Wcatch-value=] catch (CTimeException) { ^~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4520:28: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4606:12: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'virtual void ncbi::CFileHandleDiagHandler::Reopen(ncbi::CDiagHandler::TReopenFlags)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:5862:16: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] catch (CException) { ^~~~~~~~~~ In file included from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_process.hpp:44, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:36: /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::__cxx11::list, std::__cxx11::basic_string > >; ncbi::CStringPairs::TStrPairs = std::__cxx11::list, std::__cxx11::basic_string > >; EOwnership = ENcbiOwnership]': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:3949:9: required from 'void ncbi::CStringPairs::Parse(ncbi::CTempString, ncbi::NStr::EMergeDelims) [with TContainer = std::__cxx11::list, std::__cxx11::basic_string > >]' /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4233:52: required from here /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:3989:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~ trong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o //build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp: In static member function 'static bool ncbi::CThread::IsMain()': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp:516:9: warning: variable 'id' set but not used [-Wunused-but-set-variable] TID id = sx_ThreadId; ^~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp: In member function 'bool ncbi::CTime::x_Init(const string&, const ncbi::CTimeFormat&, ncbi::CTime::EErrAction)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp:696:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp:715:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-b/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp:516:12: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp:516:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ In file included from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/request_ctx.hpp:42, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/request_ctx.cpp:36: /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::map, std::__cxx11::basic_string, ncbi::PNocase_Generic > >; ncbi::CStringPairs::TStrPairs = std::map, std::__cxx11::basic_string, ncbi::PNocase_Generic > >; EOwnership = ENcbiOwnership]': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/request_ctx.cpp:725:43: required from here /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:3989:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~ last+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_In file included from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/resource_info.cpp:38: /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::multimap, std::__cxx11::basic_string >; ncbi::CStringPairs::TStrPairs = std::multimap, std::__cxx11::basic_string >; EOwnership = ENcbiOwnership]': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:3949:9: required from 'void ncbi::CStringPairs::Parse(ncbi::CTempString, ncbi::NStr::EMergeDelims) [with TContainer = std::multimap, std::__cxx11::basic_string >]' /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/resource_info.cpp:326:43: required from here /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:3989:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~ SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/n/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_url.cpp: In member function 'void ncbi::CUrl::SetUrl(const string&, const ncbi::IUrlEncoder*)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_url.cpp:460:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] catch (CStringException) { ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_cookies.cpp: In member function 'bool ncbi::CHttpCookie::Validate() const': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_cookies.cpp:327:12: warning: catching polymorphic type 'class ncbi::CHttpCookieException' by value [-Wcatch-value=] catch (CHttpCookieException) { ^~~~~~~~~~~~~~~~~~~~ cbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/guard.cpp -o guard.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/request_status.cpp -o request_status.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o -Wl,-rpath-link,/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib /bin/ln -f libxncbi.so /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/status/.xncbi.dep make[4]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib TMPL=test_mt -w all make[4]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_mt.o -Wl,-rpath-link,/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/status/.test_mt.dep make[4]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib TMPL=test_boost -w all /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In constructor 'ncbi::CNcbiTestApplication::CNcbiTestApplication()': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:925:39: error: invalid new-expression of abstract class type 'ncbi::CNcbiBoostLogger' m_Logger = new CNcbiBoostLogger(); ^ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:224:7: note: because the following virtual functions are pure within 'ncbi::CNcbiBoostLogger': class CNcbiBoostLogger : public TBoostLogFormatter ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: 'virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string)' virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0; ^~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: 'virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level)' virtual void entry_context_finish( std::ostream& os, log_level l ) = 0; ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'void ncbi::CNcbiTestApplication::SetTestDisabled(boost::unit_test::test_unit*)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:116:37: error: 'RUN_FILTERS' is not a member of 'boost::unit_test::runtime_config' RTCFG(std::vector, RUN_FILTERS, test_to_run) ^~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:997:9: note: in expansion of macro 'CONFIGURED_FILTERS' if (CONFIGURED_FILTERS.empty()) { ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'void ncbi::CNcbiTestApplication::x_SetupBoostReporters()': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1665:59: error: 'REPORT_FORMAT' is not a member of 'boost::unit_test::runtime_config' but::output_format format = RTCFG(but::output_format, REPORT_FORMAT, ^~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1693:57: error: 'LOG_FORMAT' is not a member of 'boost::unit_test::runtime_config' m_Logger->SetOutputFormat(RTCFG(but::output_format, LOG_FORMAT, ^~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'boost::unit_test::test_suite* ncbi::CNcbiTestApplication::InitTestFramework(int, char**)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:116:37: error: 'RUN_FILTERS' is not a member of 'boost::unit_test::runtime_config' RTCFG(std::vector, RUN_FILTERS, test_to_run) ^~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1815:19: note: in expansion of macro 'CONFIGURED_FILTERS' && (!CONFIGURED_FILTERS.empty() || x_ReadConfiguration())) ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'virtual void ncbi::CNcbiBoostLogger::log_entry_context(std::ostream&, boost::unit_test::const_string)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2130:43: error: no matching function for call to 'boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::const_string&)' m_Upper->log_entry_context(ostr, value); ^ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: candidate: 'virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string)' virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0; ^~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: candidate expects 3 arguments, 2 provided /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'virtual void ncbi::CNcbiBoostLogger::entry_context_finish(std::ostream&)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2135:39: error: no matching function for call to 'boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&)' m_Upper->entry_context_finish(ostr); ^ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: candidate: 'virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level)' virtual void entry_context_finish( std::ostream& os, log_level l ) = 0; ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: candidate expects 2 arguments, 1 provided In file included from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2227: /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp: In constructor 'jetbrains::teamcity::TeamcityFormatterRegistrar::TeamcityFormatterRegistrar()': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:92:89: error: invalid new-expression of abstract class type 'jetbrains::teamcity::TeamcityBoostLogFormatter' boost::unit_test::unit_test_log.set_formatter(new TeamcityBoostLogFormatter()); ^ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:44:7: note: because the following virtual functions are pure within 'jetbrains::teamcity::TeamcityBoostLogFormatter': class TeamcityBoostLogFormatter: public boost::unit_test::unit_test_log_formatter { ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: 'virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string)' virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0; ^~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: 'virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level)' virtual void entry_context_finish( std::ostream& os, log_level l ) = 0; ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:94:40: error: 'LOG_LEVEL' is not a member of 'boost::unit_test::runtime_config' (RTCFG(but::log_level, LOG_LEVEL, log_level)); ^~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In function 'int main(int, char**)': /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2266:25: error: 'WAIT_FOR_DEBUGGER' is not a member of 'boost::unit_test::runtime_config' if( RTCFG(bool, WAIT_FOR_DEBUGGER, wait_for_debugger) ) { ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2275:56: error: 'LIST_CONTENT' is not a member of 'boost::unit_test::runtime_config' output_format list_cont = RTCFG(output_format, LIST_CONTENT, ^~~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2292:25: error: 'LIST_LABELS' is not a member of 'boost::unit_test::runtime_config' if( RTCFG(bool, LIST_LABELS, list_labels) ) { ^~~~~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2319:56: error: 'RESULT_CODE' is not a member of 'boost::unit_test::runtime_config' runtime_config::get( runtime_config::RESULT_CODE ) ^~~~~~~~~~~ make[4]: *** [/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.rules:76: test_boost.o] Error 1 make[4]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp -o test_boost.o make[4]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' FAILED: src/corelib/Makefile.test_boost.lib make[4]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp -o test_boost.o make[4]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /bin/rm -f libtest_boost.so libtest_boost.so .test_boost.dep .libtest_boost.so.stamp /bin/rm -f /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/lib/libtest_boost.so /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/status/.test_boost.dep make[4]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' make[3]: *** [/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/build-system/Makefile.meta_l:301: all.nonusr] Error 2 make[3]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' make[2]: *** [/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/src/build-system/Makefile.meta_l:259: all_l.real] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' ------------------------------------------------------ Current dir: /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/corelib [create_flat_makefile.sh] FAILED (status 2): make =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE MBEDTLS GMP GMP NETTLE NETTLE GNUTLS Boost.Spirit Boost.Test.Included LMDB LocalLMDB disabled: UUID FUSE LIBUNWIND LocalZ LocalBZ2 LZO LocalPCRE GCRYPT OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 GMOCK LAPACK LIBUV LIBSSH2 CASSANDRA LIBXLSXWRITER GRPC PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build && /usr/bin/make all_r or simply run /usr/bin/make in the current directory ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1' cd c++/BUILD/build && \ make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build' make[2]: Makefile.flat: No such file or directory make[2]: *** No rule to make target 'Makefile.flat'. Stop. make[2]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1/c++/BUILD/build' make[1]: *** [debian/rules:56: override_dh_auto_build-arch] Error 2 make[1]: Leaving directory '/build/ncbi-blast+-I24T32/ncbi-blast+-2.7.1' make: *** [debian/rules:129: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20180721-1813 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /build/ncbi-blast+-I24T32 Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 390420 Build-Time: 366 Distribution: cosmic-proposed Fail-Stage: build Host Architecture: i386 Install-Time: 17 Job: ncbi-blast+_2.7.1-1.dsc Machine Architecture: amd64 Package: ncbi-blast+ Package-Time: 388 Source-Version: 2.7.1-1 Space: 390420 Status: attempted Version: 2.7.1-1 -------------------------------------------------------------------------------- Finished at 20180721-1813 Build needed 00:06:28, 390420k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14813050 Scanning for processes to kill in build PACKAGEBUILD-14813050