https://launchpad.net/ubuntu/+source/ncbi-blast+/2.7.1-1/+build/14355192 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-006 4.4.0-119-generic #143-Ubuntu SMP Mon Apr 2 16:07:17 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_160 python-lpbuildd_160 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 21 Apr 12:18:03 ntpdate[1750]: adjust time server 10.211.37.1 offset -0.000011 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14355192 /home/buildd/filecache-default/c63540de4962374dad549ddd7685c5c502845718 Creating target for build PACKAGEBUILD-14355192 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14355192 Starting target for build PACKAGEBUILD-14355192 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14355192 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14355192 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14355192 Updating target for build PACKAGEBUILD-14355192 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x Packages [947 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe s390x Packages [8170 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4941 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x Packages [9128 B] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [7712 B] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe s390x Packages [25.9 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [20.0 kB] Fetched 15.2 MB in 3s (4898 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gnupg-agent libcurl3-gnutls libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: dirmngr gcc-8-base gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libargon2-0 libasan4 libcom-err2 libcryptsetup12 libext2fs2 libgdbm-compat4 libgdbm5 libisl19 libjson-c3 libmpfr6 libnghttp2-14 libssl1.1 libubsan0 libunistring2 libzstd1 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-7 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot fdisk findutils g++ g++-7 gcc gcc-7 gcc-7-base gnupg gnupg-agent gpgv hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasn1-8-heimdal libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcomerr2 libcurl3-gnutls libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi6 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libidn2-0 libip4tc0 libisl15 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblz4-1 libmount1 libmpc3 libncurses5 libncursesw5 libnettle6 libnpth0 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.26 libpng16-16 libprocps6 libpsl5 libreadline7 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make mawk mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata ubuntu-keyring util-linux 154 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. Need to get 62.6 MB of archives. After this operation, 20.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main s390x base-files s390x 10.1ubuntu1 [58.2 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main s390x debianutils s390x 4.8.4 [85.2 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main s390x bash s390x 4.4.18-2ubuntu1 [583 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main s390x bsdutils s390x 1:2.31.1-0.4ubuntu3 [57.9 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x coreutils s390x 8.28-1ubuntu1 [1218 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main s390x perl-modules-5.26 all 5.26.1-6 [2760 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main s390x libgdbm5 s390x 1.14.1-6 [25.6 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main s390x libgdbm-compat4 s390x 1.14.1-6 [6212 B] Get:9 http://ftpmaster.internal/ubuntu bionic/main s390x libperl5.26 s390x 5.26.1-6 [3383 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main s390x perl s390x 5.26.1-6 [201 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main s390x perl-base s390x 5.26.1-6 [1309 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main s390x libc6-dev s390x 2.27-3ubuntu1 [2034 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main s390x libc-dev-bin s390x 2.27-3ubuntu1 [62.1 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x linux-libc-dev s390x 4.15.0-18.19 [1012 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main s390x libc6 s390x 2.27-3ubuntu1 [2333 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main s390x libc-bin s390x 2.27-3ubuntu1 [526 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main s390x gcc-8-base s390x 8-20180414-1ubuntu2 [18.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main s390x libgcc1 s390x 1:8-20180414-1ubuntu2 [25.1 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main s390x libzstd1 s390x 1.3.3+dfsg-2ubuntu1 [182 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main s390x dpkg s390x 1.19.0.5ubuntu2 [1118 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main s390x dash s390x 0.5.8-2.10 [86.2 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main s390x libcom-err2 s390x 1.44.1-1 [9740 B] Get:23 http://ftpmaster.internal/ubuntu bionic/main s390x libcomerr2 s390x 1.44.1-1 [2696 B] Get:24 http://ftpmaster.internal/ubuntu bionic/main s390x libext2fs2 s390x 1.44.1-1 [154 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main s390x e2fslibs s390x 1.44.1-1 [2700 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main s390x e2fsprogs s390x 1.44.1-1 [369 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main s390x findutils s390x 4.6.0+git+20170828-2 [287 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main s390x hostname s390x 3.20 [11.0 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main s390x login s390x 1:4.5-1ubuntu1 [304 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main s390x libncurses5 s390x 6.1-1ubuntu1 [89.1 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main s390x libtinfo5 s390x 6.1-1ubuntu1 [77.4 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main s390x ncurses-bin s390x 6.1-1ubuntu1 [159 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main s390x libncursesw5 s390x 6.1-1ubuntu1 [108 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main s390x sed s390x 4.4-2 [181 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main s390x libuuid1 s390x 2.31.1-0.4ubuntu3 [20.0 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main s390x libblkid1 s390x 2.31.1-0.4ubuntu3 [117 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main s390x libsmartcols1 s390x 2.31.1-0.4ubuntu3 [79.2 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main s390x libfdisk1 s390x 2.31.1-0.4ubuntu3 [152 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main s390x libpcre3 s390x 2:8.39-9 [154 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main s390x libselinux1 s390x 2.7-2build2 [63.9 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main s390x libmount1 s390x 2.31.1-0.4ubuntu3 [126 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main s390x fdisk s390x 2.31.1-0.4ubuntu3 [103 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main s390x util-linux s390x 2.31.1-0.4ubuntu3 [867 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main s390x base-passwd s390x 3.5.44 [46.2 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main s390x init-system-helpers all 1.51 [37.3 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main s390x ncurses-base all 6.1-1ubuntu1 [17.3 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main s390x sysvinit-utils s390x 2.88dsf-59.10ubuntu1 [18.2 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main s390x liblz4-1 s390x 0.0~r131-2ubuntu3 [37.3 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main s390x libstdc++6 s390x 8-20180414-1ubuntu2 [398 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libudev1 s390x 237-3ubuntu9 [50.2 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main s390x libapt-pkg5.0 s390x 1.6.1 [744 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main s390x libaudit-common all 1:2.8.2-1ubuntu1 [4132 B] Get:53 http://ftpmaster.internal/ubuntu bionic/main s390x libcap-ng0 s390x 0.7.7-3.1 [10.7 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main s390x libaudit1 s390x 1:2.8.2-1ubuntu1 [37.0 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main s390x debconf all 1.5.66 [124 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main s390x libpam0g s390x 1.1.8-3.6ubuntu2 [52.8 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main s390x libsemanage-common all 2.7-2build2 [6904 B] Get:58 http://ftpmaster.internal/ubuntu bionic/main s390x libsemanage1 s390x 2.7-2build2 [78.1 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main s390x libpam-modules-bin s390x 1.1.8-3.6ubuntu2 [35.2 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main s390x libpam-modules s390x 1.1.8-3.6ubuntu2 [231 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main s390x passwd s390x 1:4.5-1ubuntu1 [798 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main s390x adduser all 3.116ubuntu1 [163 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main s390x libgpg-error0 s390x 1.27-6 [36.6 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main s390x libgcrypt20 s390x 1.8.1-4ubuntu1 [349 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main s390x gpgv s390x 2.2.4-1ubuntu1 [180 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main s390x ubuntu-keyring all 2018.02.28 [20.7 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main s390x libunistring2 s390x 0.9.9-0ubuntu1 [358 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main s390x libgmp10 s390x 2:6.1.2+dfsg-2 [225 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main s390x libnettle6 s390x 3.4-1 [120 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main s390x libhogweed4 s390x 3.4-1 [136 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main s390x libidn2-0 s390x 2.0.4-1.1build2 [47.0 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main s390x libffi6 s390x 3.2.1-8 [16.5 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main s390x libp11-kit0 s390x 0.23.9-2 [188 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main s390x libtasn1-6 s390x 4.13-2 [34.2 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main s390x libgnutls30 s390x 3.5.18-1ubuntu1 [556 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main s390x libseccomp2 s390x 2.3.1-2.1ubuntu4 [41.1 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main s390x apt s390x 1.6.1 [1128 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main s390x libargon2-0 s390x 0~20161029-1.1 [35.5 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main s390x libjson-c3 s390x 0.12.1-1.3 [20.8 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main s390x libdevmapper1.02.1 s390x 2:1.02.145-4.1ubuntu3 [122 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main s390x libcryptsetup12 s390x 2:2.0.2-1ubuntu1 [120 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main s390x libapparmor1 s390x 2.12-4ubuntu5 [30.4 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main s390x libcap2 s390x 1:2.25-1.2 [13.2 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main s390x libidn11 s390x 1.33-2.1ubuntu1 [44.4 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main s390x libip4tc0 s390x 1.6.1-2ubuntu2 [19.3 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main s390x libkmod2 s390x 24-1ubuntu3 [36.9 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main s390x mount s390x 2.31.1-0.4ubuntu3 [103 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main s390x libprocps6 s390x 2:3.3.12-3ubuntu1 [30.0 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main s390x lsb-base all 9.20170808ubuntu1 [12.5 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main s390x procps s390x 2:3.3.12-3ubuntu1 [215 kB] Get:91 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x systemd s390x 237-3ubuntu9 [2617 kB] Get:92 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libsystemd0 s390x 237-3ubuntu9 [187 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main s390x mawk s390x 1.3.3-17ubuntu3 [78.8 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main s390x init s390x 1.51 [5864 B] Get:95 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x systemd-sysv s390x 237-3ubuntu9 [11.6 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main s390x libpam-runtime all 1.1.8-3.6ubuntu2 [37.0 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main s390x libss2 s390x 1.44.1-1 [10.7 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/main s390x sensible-utils all 0.0.12 [14.8 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main s390x libssl1.1 s390x 1.1.0g-2ubuntu3 [811 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main s390x openssl s390x 1.1.0g-2ubuntu3 [519 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main s390x ca-certificates all 20180409 [151 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main s390x dmsetup s390x 2:1.02.145-4.1ubuntu3 [73.0 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main s390x readline-common all 7.0-3 [52.9 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main s390x libreadline7 s390x 7.0-3 [117 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main s390x libslang2 s390x 2.3.1a-3ubuntu1 [415 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/main s390x libsqlite3-0 s390x 3.22.0-1 [463 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main s390x tzdata all 2018d-1 [188 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main s390x libgssapi-krb5-2 s390x 1.16-2build1 [110 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main s390x libkrb5-3 s390x 1.16-2build1 [261 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main s390x libk5crypto3 s390x 1.16-2build1 [84.1 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main s390x libkrb5support0 s390x 1.16-2build1 [30.4 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main s390x libkeyutils1 s390x 1.5.9-9.2ubuntu2 [8520 B] Get:113 http://ftpmaster.internal/ubuntu bionic/main s390x libpng16-16 s390x 1.6.34-1 [171 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main s390x libpsl5 s390x 0.19.1-5build1 [41.5 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main s390x libssl1.0.0 s390x 1.0.2n-1ubuntu5 [777 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/main s390x multiarch-support s390x 2.27-3ubuntu1 [6916 B] Get:117 http://ftpmaster.internal/ubuntu bionic/main s390x advancecomp s390x 2.1-1 [182 kB] Get:118 http://ftpmaster.internal/ubuntu bionic/universe s390x apt-transport-https all 1.6.1 [1692 B] Get:119 http://ftpmaster.internal/ubuntu bionic/main s390x libbinutils s390x 2.30-15ubuntu1 [305 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main s390x binutils s390x 2.30-15ubuntu1 [3328 B] Get:121 http://ftpmaster.internal/ubuntu bionic/main s390x binutils-common s390x 2.30-15ubuntu1 [193 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main s390x binutils-s390x-linux-gnu s390x 2.30-15ubuntu1 [1721 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main s390x libgomp1 s390x 8-20180414-1ubuntu2 [69.9 kB] Get:124 http://ftpmaster.internal/ubuntu bionic/main s390x libitm1 s390x 8-20180414-1ubuntu2 [26.9 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main s390x libatomic1 s390x 8-20180414-1ubuntu2 [8440 B] Get:126 http://ftpmaster.internal/ubuntu bionic/main s390x libasan4 s390x 7.3.0-16ubuntu3 [318 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main s390x libubsan0 s390x 7.3.0-16ubuntu3 [120 kB] Get:128 http://ftpmaster.internal/ubuntu bionic/main s390x g++-7 s390x 7.3.0-16ubuntu3 [5989 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main s390x gcc-7 s390x 7.3.0-16ubuntu3 [5883 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main s390x libstdc++-7-dev s390x 7.3.0-16ubuntu3 [1453 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main s390x libgcc-7-dev s390x 7.3.0-16ubuntu3 [641 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main s390x libcc1-0 s390x 8-20180414-1ubuntu2 [37.3 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main s390x cpp-7 s390x 7.3.0-16ubuntu3 [5184 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main s390x gcc-7-base s390x 7.3.0-16ubuntu3 [18.8 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main s390x libisl19 s390x 0.19-1 [512 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main s390x libmpc3 s390x 1.1.0-1 [38.3 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main s390x libmpfr6 s390x 4.0.1-1 [230 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main s390x cpp s390x 4:7.3.0-3ubuntu2 [27.5 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main s390x gcc s390x 4:7.3.0-3ubuntu2 [5188 B] Get:140 http://ftpmaster.internal/ubuntu bionic/main s390x g++ s390x 4:7.3.0-3ubuntu2 [1576 B] Get:141 http://ftpmaster.internal/ubuntu bionic/main s390x make s390x 4.1-9.1ubuntu1 [148 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main s390x dpkg-dev all 1.19.0.5ubuntu2 [607 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/main s390x libdpkg-perl all 1.19.0.5ubuntu2 [211 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/main s390x patch s390x 2.7.6-2ubuntu1 [102 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/main s390x build-essential s390x 12.4ubuntu1 [4754 B] Get:146 http://ftpmaster.internal/ubuntu bionic/main s390x gnupg-l10n all 2.2.4-1ubuntu1 [48.6 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/main s390x libassuan0 s390x 2.5.1-2 [32.1 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/main s390x gnupg s390x 2.2.4-1ubuntu1 [249 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/universe s390x gnupg-agent all 2.2.4-1ubuntu1 [4544 B] Get:150 http://ftpmaster.internal/ubuntu bionic/main s390x gpgconf s390x 2.2.4-1ubuntu1 [115 kB] Get:151 http://ftpmaster.internal/ubuntu bionic/main s390x pinentry-curses s390x 1.1.0-1 [34.4 kB] Get:152 http://ftpmaster.internal/ubuntu bionic/main s390x libnpth0 s390x 1.5-3 [7512 B] Get:153 http://ftpmaster.internal/ubuntu bionic/main s390x gpg-agent s390x 2.2.4-1ubuntu1 [208 kB] Get:154 http://ftpmaster.internal/ubuntu bionic/main s390x gnupg-utils s390x 2.2.4-1ubuntu1 [117 kB] Get:155 http://ftpmaster.internal/ubuntu bionic/main s390x gpg s390x 2.2.4-1ubuntu1 [425 kB] Get:156 http://ftpmaster.internal/ubuntu bionic/main s390x gpg-wks-client s390x 2.2.4-1ubuntu1 [86.0 kB] Get:157 http://ftpmaster.internal/ubuntu bionic/main s390x gpg-wks-server s390x 2.2.4-1ubuntu1 [79.7 kB] Get:158 http://ftpmaster.internal/ubuntu bionic/main s390x gpgsm s390x 2.2.4-1ubuntu1 [197 kB] Get:159 http://ftpmaster.internal/ubuntu bionic/main s390x dirmngr s390x 2.2.4-1ubuntu1 [296 kB] Get:160 http://ftpmaster.internal/ubuntu bionic/main s390x libfakeroot s390x 1.22-2ubuntu1 [24.4 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/main s390x fakeroot s390x 1.22-2ubuntu1 [60.9 kB] Get:162 http://ftpmaster.internal/ubuntu bionic/main s390x libroken18-heimdal s390x 7.5.0+dfsg-1 [39.4 kB] Get:163 http://ftpmaster.internal/ubuntu bionic/main s390x libasn1-8-heimdal s390x 7.5.0+dfsg-1 [147 kB] Get:164 http://ftpmaster.internal/ubuntu bionic/main s390x libnghttp2-14 s390x 1.30.0-1ubuntu1 [74.1 kB] Get:165 http://ftpmaster.internal/ubuntu bionic/main s390x libcurl3-gnutls s390x 7.58.0-2ubuntu3 [195 kB] Get:166 http://ftpmaster.internal/ubuntu bionic/main s390x libheimbase1-heimdal s390x 7.5.0+dfsg-1 [27.5 kB] Get:167 http://ftpmaster.internal/ubuntu bionic/main s390x libhcrypto4-heimdal s390x 7.5.0+dfsg-1 [82.4 kB] Get:168 http://ftpmaster.internal/ubuntu bionic/main s390x libwind0-heimdal s390x 7.5.0+dfsg-1 [47.7 kB] Get:169 http://ftpmaster.internal/ubuntu bionic/main s390x libhx509-5-heimdal s390x 7.5.0+dfsg-1 [98.3 kB] Get:170 http://ftpmaster.internal/ubuntu bionic/main s390x libkrb5-26-heimdal s390x 7.5.0+dfsg-1 [190 kB] Get:171 http://ftpmaster.internal/ubuntu bionic/main s390x libheimntlm0-heimdal s390x 7.5.0+dfsg-1 [14.1 kB] Get:172 http://ftpmaster.internal/ubuntu bionic/main s390x libgssapi3-heimdal s390x 7.5.0+dfsg-1 [86.9 kB] Get:173 http://ftpmaster.internal/ubuntu bionic/universe s390x libisl15 s390x 0.18-4 [509 kB] Get:174 http://ftpmaster.internal/ubuntu bionic/main s390x liblockfile-bin s390x 1.14-1.1 [11.8 kB] Get:175 http://ftpmaster.internal/ubuntu bionic/main s390x liblockfile1 s390x 1.14-1.1 [6532 B] Get:176 http://ftpmaster.internal/ubuntu bionic/main s390x libsasl2-modules-db s390x 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.9 kB] Get:177 http://ftpmaster.internal/ubuntu bionic/main s390x libsasl2-2 s390x 2.1.27~101-g0780600+dfsg-3ubuntu2 [46.5 kB] Get:178 http://ftpmaster.internal/ubuntu bionic/main s390x optipng s390x 0.7.6-1.1 [82.0 kB] Get:179 http://ftpmaster.internal/ubuntu bionic/main s390x pkgbinarymangler all 138 [52.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.6 MB in 2s (29.7 MB/s) (Reading database ... 12436 files and directories currently 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Setting up libgomp1:s390x (8-20180414-1ubuntu2) ... Setting up libatomic1:s390x (8-20180414-1ubuntu2) ... Setting up readline-common (7.0-3) ... Setting up liblockfile-bin (1.14-1.1) ... Setting up libcc1-0:s390x (8-20180414-1ubuntu2) ... Setting up make (4.1-9.1ubuntu1) ... Setting up apt-transport-https (1.6.1) ... Setting up libssl1.0.0:s390x (1.0.2n-1ubuntu5) ... Setting up libnghttp2-14:s390x (1.30.0-1ubuntu1) ... Setting up e2fslibs:s390x (1.44.1-1) ... Setting up libpng16-16:s390x (1.6.34-1) ... Setting up libreadline7:s390x (7.0-3) ... Setting up libpsl5:s390x (0.19.1-5build1) ... Setting up multiarch-support (2.27-3ubuntu1) ... Setting up tzdata (2018d-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Apr 21 12:18:30 UTC 2018. Universal Time is now: Sat Apr 21 12:18:30 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (237-3ubuntu9) ... Setting up mawk (1.3.3-17ubuntu3) ... Setting up liblockfile1:s390x (1.14-1.1) ... Setting up libsasl2-modules-db:s390x (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up linux-libc-dev:s390x (4.15.0-18.19) ... Setting up libmpfr6:s390x (4.0.1-1) ... Setting up advancecomp (2.1-1) ... Setting up libsasl2-2:s390x (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libroken18-heimdal:s390x (7.5.0+dfsg-1) ... Setting up perl-modules-5.26 (5.26.1-6) ... Setting up libgdbm5:s390x (1.14.1-6) ... Setting up libkrb5support0:s390x (1.16-2build1) ... Setting up optipng (0.7.6-1.1) ... Setting up gnupg-l10n (2.2.4-1ubuntu1) ... Setting up gcc-7-base:s390x (7.3.0-16ubuntu3) ... Setting up binutils-common:s390x (2.30-15ubuntu1) ... Setting up libisl15:s390x (0.18-4) ... Setting up sensible-utils (0.0.12) ... Setting up patch (2.7.6-2ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libssl1.1:s390x (1.1.0g-2ubuntu3) ... Setting up libheimbase1-heimdal:s390x (7.5.0+dfsg-1) ... Setting up libfakeroot:s390x (1.22-2ubuntu1) ... Setting up openssl (1.1.0g-2ubuntu3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libsqlite3-0:s390x (3.22.0-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu3) ... Setting up libmpc3:s390x (1.1.0-1) ... Setting up libc-dev-bin (2.27-3ubuntu1) ... Setting up libcomerr2:s390x (1.44.1-1) ... Setting up libgdbm-compat4:s390x (1.14.1-6) ... Setting up libkeyutils1:s390x (1.5.9-9.2ubuntu2) ... Setting up ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 8 added, 23 removed; done. Setting up libc6-dev:s390x (2.27-3ubuntu1) ... Setting up libslang2:s390x (2.3.1a-3ubuntu1) ... Setting up libassuan0:s390x (2.5.1-2) ... Setting up libitm1:s390x (8-20180414-1ubuntu2) ... Setting up libisl19:s390x (0.19-1) ... Setting up libk5crypto3:s390x (1.16-2build1) ... Setting up pkgbinarymangler (138) ... Setting up libwind0-heimdal:s390x (7.5.0+dfsg-1) ... Setting up libasan4:s390x (7.3.0-16ubuntu3) ... Setting up libbinutils:s390x (2.30-15ubuntu1) ... Setting up init (1.51) ... Setting up libasn1-8-heimdal:s390x (7.5.0+dfsg-1) ... Setting up libubsan0:s390x (7.3.0-16ubuntu3) ... Setting up gpgconf (2.2.4-1ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.30-15ubuntu1) ... Setting up libhcrypto4-heimdal:s390x (7.5.0+dfsg-1) ... Setting up fakeroot (1.22-2ubuntu1) ... Setting up libhx509-5-heimdal:s390x (7.5.0+dfsg-1) ... Setting up libgcc-7-dev:s390x (7.3.0-16ubuntu3) ... Setting up cpp-7 (7.3.0-16ubuntu3) ... Setting up libstdc++-7-dev:s390x (7.3.0-16ubuntu3) ... Setting up libperl5.26:s390x (5.26.1-6) ... Setting up gpgsm (2.2.4-1ubuntu1) ... Setting up gnupg-utils (2.2.4-1ubuntu1) ... Setting up pinentry-curses (1.1.0-1) ... Setting up libkrb5-3:s390x (1.16-2build1) ... Setting up binutils (2.30-15ubuntu1) ... Setting up libkrb5-26-heimdal:s390x (7.5.0+dfsg-1) ... Setting up dirmngr (2.2.4-1ubuntu1) ... Setting up libheimntlm0-heimdal:s390x (7.5.0+dfsg-1) ... Setting up gpg (2.2.4-1ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu2) ... Setting up gcc-7 (7.3.0-16ubuntu3) ... Setting up g++-7 (7.3.0-16ubuntu3) ... Setting up gpg-agent (2.2.4-1ubuntu1) ... Installing new version of config file /etc/X11/Xsession.d/90gpg-agent ... Setting up gcc (4:7.3.0-3ubuntu2) ... Setting up gpg-wks-server (2.2.4-1ubuntu1) ... Setting up gpg-wks-client (2.2.4-1ubuntu1) ... Setting up libgssapi-krb5-2:s390x (1.16-2build1) ... Setting up perl (5.26.1-6) ... Setting up g++ (4:7.3.0-3ubuntu2) ... Setting up gnupg-agent (2.2.4-1ubuntu1) ... Setting up libgssapi3-heimdal:s390x (7.5.0+dfsg-1) ... Setting up libcurl3-gnutls:s390x (7.58.0-2ubuntu3) ... Setting up gnupg (2.2.4-1ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu2) ... Setting up dpkg-dev (1.19.0.5ubuntu2) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14355192 s390x bionic-proposed -c chroot:build-PACKAGEBUILD-14355192 --arch=s390x --dist=bionic-proposed --nolog ncbi-blast+_2.7.1-1.dsc Initiating build PACKAGEBUILD-14355192 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-119-generic #143-Ubuntu SMP Mon Apr 2 16:07:17 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-006.buildd +==============================================================================+ | ncbi-blast+ 2.7.1-1 (s390x) 21 Apr 2018 12:18 | +==============================================================================+ Package: ncbi-blast+ Version: 2.7.1-1 Source Version: 2.7.1-1 Distribution: bionic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-4hspPJ' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14355192/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ncbi-blast+_2.7.1-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-4hspPJ/resolver-pxb5xx/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-4hspPJ/resolver-pxb5xx/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-4hspPJ/resolver-pxb5xx/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-4hspPJ/resolver-pxb5xx/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-4hspPJ/resolver-pxb5xx/apt_archive ./ Sources [214 B] Get:5 copy:/build/ncbi-blast+-4hspPJ/resolver-pxb5xx/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcurl3-gnutls libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-4hspPJ/resolver-pxb5xx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12728 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-4hspPJ/resolver-sw12yW/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-4hspPJ/resolver-sw12yW/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-4hspPJ/resolver-sw12yW/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-4hspPJ/resolver-sw12yW/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-4hspPJ/resolver-sw12yW/apt_archive ./ Sources [272 B] Get:5 copy:/build/ncbi-blast+-4hspPJ/resolver-sw12yW/apt_archive ./ Packages [587 B] Fetched 2978 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ncbi-blast+ build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcurl3-gnutls libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.65-dev libboost-test1.65.1 libboost1.65-dev libbsd0 libbz2-dev libcroco3 libevent-2.1-6 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dane0 libgnutls-openssl27 libgnutls28-dev libgnutlsxx28 libicu60 libidn2-0-dev libidn2-dev libmagic-mgc libmagic1 libmbedcrypto1 libmbedtls-dev libmbedtls10 libmbedx509-0 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtimedate-perl libtool libunbound2 libxml2 m4 man-db nettle-dev po-debconf time zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.65-doc libboost-atomic1.65-dev libboost-chrono1.65-dev libboost-container1.65-dev libboost-date-time1.65-dev libboost-exception1.65-dev libboost-filesystem1.65-dev libboost-graph1.65-dev libboost-graph-parallel1.65-dev libboost-iostreams1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-program-options1.65-dev libboost-python1.65-dev libboost-random1.65-dev libboost-regex1.65-dev libboost-serialization1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-system1.65-dev libboost-thread1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-doc gnutls-bin libmbedtls-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libtasn1-doc libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.65-dev libboost-test1.65.1 libboost1.65-dev libbsd0 libbz2-dev libcroco3 libevent-2.1-6 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dane0 libgnutls-openssl27 libgnutls28-dev libgnutlsxx28 libicu60 libidn2-0-dev libidn2-dev libmagic-mgc libmagic1 libmbedcrypto1 libmbedtls-dev libmbedtls10 libmbedx509-0 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtimedate-perl libtool libunbound2 libxml2 m4 man-db nettle-dev po-debconf sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 58 newly installed, 1 to remove and 0 not upgraded. Need to get 27.8 MB of archives. After this operation, 204 MB of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-4hspPJ/resolver-sw12yW/apt_archive ./ sbuild-build-depends-ncbi-blast+-dummy 0.invalid.0 [924 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main s390x libbsd0 s390x 0.8.7-1 [40.0 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main s390x bsdmainutils s390x 11.1.2ubuntu1 [181 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main s390x groff-base s390x 1.22.3-10 [1174 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main s390x man-db s390x 2.8.3-2 [1007 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main s390x libmagic-mgc s390x 1:5.32-2 [185 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main s390x libmagic1 s390x 1:5.32-2 [66.9 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main s390x file s390x 1:5.32-2 [21.9 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main s390x libglib2.0-0 s390x 2.56.1-2ubuntu1 [1077 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main s390x libicu60 s390x 60.2-3ubuntu3 [7837 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main s390x libxml2 s390x 2.9.4+dfsg1-6.1ubuntu1 [587 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main s390x gettext-base s390x 0.19.8.1-6 [48.3 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main s390x time s390x 1.7-25.1build1 [26.5 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main s390x libsigsegv2 s390x 2.12-1 [14.6 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main s390x autoconf all 2.69-11 [322 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main s390x automake all 1:1.15.1-3ubuntu2 [509 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main s390x autopoint all 0.19.8.1-6 [412 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main s390x libtool all 2.4.6-2 [194 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main s390x dh-autoreconf all 17 [15.8 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main s390x libarchive-zip-perl all 1.60-1 [83.9 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main s390x libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main s390x dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:27 http://ftpmaster.internal/ubuntu bionic/main s390x libcroco3 s390x 0.6.12-2 [74.2 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main s390x gettext s390x 0.19.8.1-6 [858 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main s390x po-debconf all 1.0.20 [232 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main s390x debhelper all 11.1.6ubuntu1 [902 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main s390x libboost1.65-dev s390x 1.65.1+dfsg-0ubuntu5 [7218 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/universe s390x libboost-test1.65.1 s390x 1.65.1+dfsg-0ubuntu5 [219 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/universe s390x libboost-test1.65-dev s390x 1.65.1+dfsg-0ubuntu5 [267 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/universe s390x libboost-test-dev s390x 1.65.1.0ubuntu1 [2960 B] Get:36 http://ftpmaster.internal/ubuntu bionic/main s390x libbz2-dev s390x 1.0.6-8.1 [30.4 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main s390x libevent-2.1-6 s390x 2.1.8-stable-4build1 [122 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main s390x libgmpxx4ldbl s390x 2:6.1.2+dfsg-2 [8868 B] Get:39 http://ftpmaster.internal/ubuntu bionic/main s390x libgmp-dev s390x 2:6.1.2+dfsg-2 [302 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main s390x libgnutls-openssl27 s390x 3.5.18-1ubuntu1 [20.7 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main s390x libgnutlsxx28 s390x 3.5.18-1ubuntu1 [13.6 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main s390x libunbound2 s390x 1.6.7-1ubuntu2 [275 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main s390x libgnutls-dane0 s390x 3.5.18-1ubuntu1 [20.6 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main s390x nettle-dev s390x 3.4-1 [961 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-0ubuntu2 [173 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main s390x libtasn1-6-dev s390x 4.13-2 [85.3 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main s390x libp11-kit-dev s390x 0.23.9-2 [60.9 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main s390x libidn2-dev s390x 2.0.4-1.1build2 [60.6 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main s390x libidn2-0-dev s390x 2.0.4-1.1build2 [2844 B] Get:50 http://ftpmaster.internal/ubuntu bionic/main s390x libgnutls28-dev s390x 3.5.18-1ubuntu1 [573 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/universe s390x libmbedcrypto1 s390x 2.8.0-1 [134 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/universe s390x libmbedx509-0 s390x 2.8.0-1 [32.2 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/universe s390x libmbedtls10 s390x 2.8.0-1 [58.9 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/universe s390x libmbedtls-dev s390x 2.8.0-1 [368 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main s390x libpcre16-3 s390x 2:8.39-9 [79.4 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main s390x libpcre32-3 s390x 2:8.39-9 [73.8 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main s390x libpcrecpp0v5 s390x 2:8.39-9 [14.5 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main s390x libpcre3-dev s390x 2:8.39-9 [373 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.8 MB in 1s (27.9 MB/s) (Reading database ... 12728 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package libbsd0:s390x. (Reading database ... 12719 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_s390x.deb ... Unpacking libbsd0:s390x (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu1_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_s390x.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.0-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_s390x.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.32-2_s390x.deb ... 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Setting up libbsd0:s390x (0.8.7-1) ... Setting up libxml2:s390x (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.32-2) ... Setting up libmagic1:s390x (1:5.32-2) ... Setting up libcroco3:s390x (0.6.12-2) ... Setting up libgnutlsxx28:s390x (3.5.18-1ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libgnutls-openssl27:s390x (3.5.18-1ubuntu1) ... Setting up libpcrecpp0v5:s390x (2:8.39-9) ... Setting up libpcre32-3:s390x (2:8.39-9) ... Setting up libmbedx509-0:s390x (2.8.0-1) ... Setting up libpcre16-3:s390x (2:8.39-9) ... Setting up bsdmainutils (11.1.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:s390x (2:6.1.2+dfsg-2) ... Setting up libidn2-dev:s390x (2.0.4-1.1build2) ... Setting up libboost-test1.65.1:s390x (1.65.1+dfsg-0ubuntu5) ... Setting up libboost1.65-dev:s390x (1.65.1+dfsg-0ubuntu5) ... Setting up libidn2-0-dev (2.0.4-1.1build2) ... Setting up autopoint (0.19.8.1-6) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up libgmp-dev:s390x (2:6.1.2+dfsg-2) ... Setting up libunbound2:s390x (1.6.7-1ubuntu2) ... Setting up libpcre3-dev:s390x (2:8.39-9) ... Setting up libmbedtls10:s390x (2.8.0-1) ... Setting up libboost-test1.65-dev:s390x (1.65.1+dfsg-0ubuntu5) ... Setting up gettext (0.19.8.1-6) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2) ... Setting up libmbedtls-dev:s390x (2.8.0-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libgnutls-dane0:s390x (3.5.18-1ubuntu1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up nettle-dev:s390x (3.4-1) ... Setting up libboost-test-dev:s390x (1.65.1.0ubuntu1) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up libgnutls28-dev:s390x (3.5.18-1ubuntu1) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up debhelper (11.1.6ubuntu1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... (Reading database ... 28782 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-119-generic s390x (s390x) Toolchain package versions: binutils_2.30-15ubuntu1 dpkg-dev_1.19.0.5ubuntu2 g++-7_7.3.0-16ubuntu3 gcc-7_7.3.0-16ubuntu3 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-16ubuntu3 libstdc++6_8-20180414-1ubuntu2 linux-libc-dev_4.15.0-18.19 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 apt-transport-https_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1ubuntu1 base-passwd_3.5.44 bash_4.4.18-2ubuntu1 binutils_2.30-15ubuntu1 binutils-common_2.30-15ubuntu1 binutils-s390x-linux-gnu_2.30-15ubuntu1 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.31.1-0.4ubuntu3 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu2 cpp-7_7.3.0-16ubuntu3 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.1.6ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dirmngr_2.2.4-1ubuntu1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu2 dpkg-dev_1.19.0.5ubuntu2 e2fslibs_1.44.1-1 e2fsprogs_1.44.1-1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu3 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu2 g++-7_7.3.0-16ubuntu3 gcc_4:7.3.0-3ubuntu2 gcc-7_7.3.0-16ubuntu3 gcc-7-base_7.3.0-16ubuntu3 gcc-8-base_8-20180414-1ubuntu2 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.4-1ubuntu1 gnupg-agent_2.2.4-1ubuntu1 gnupg-l10n_2.2.4-1ubuntu1 gnupg-utils_2.2.4-1ubuntu1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpg-wks-client_2.2.4-1ubuntu1 gpg-wks-server_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgsm_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 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libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu2 libevent-2.1-6_2.1.8-stable-4build1 libext2fs2_1.44.1-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.3.0-16ubuntu3 libgcc1_1:8-20180414-1ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp-dev_2:6.1.2+dfsg-2 libgmp10_2:6.1.2+dfsg-2 libgmpxx4ldbl_2:6.1.2+dfsg-2 libgnutls-dane0_3.5.18-1ubuntu1 libgnutls-openssl27_3.5.18-1ubuntu1 libgnutls28-dev_3.5.18-1ubuntu1 libgnutls30_3.5.18-1ubuntu1 libgnutlsxx28_3.5.18-1ubuntu1 libgomp1_8-20180414-1ubuntu2 libgpg-error0_1.27-6 libgssapi-krb5-2_1.16-2build1 libgssapi3-heimdal_7.5.0+dfsg-1 libhcrypto4-heimdal_7.5.0+dfsg-1 libheimbase1-heimdal_7.5.0+dfsg-1 libheimntlm0-heimdal_7.5.0+dfsg-1 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libidn2-0-dev_2.0.4-1.1build2 libidn2-dev_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180414-1ubuntu2 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu2 libkmod2_24-1ubuntu3 libkrb5-26-heimdal_7.5.0+dfsg-1 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmbedcrypto1_2.8.0-1 libmbedtls-dev_2.8.0-1 libmbedtls10_2.8.0-1 libmbedx509-0_2.8.0-1 libmount1_2.31.1-0.4ubuntu3 libmpc3_1.1.0-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libncurses5_6.1-1ubuntu1 libncursesw5_6.1-1ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.30.0-1ubuntu1 libnpth0_1.5-3 libp11-kit-dev_0.23.9-2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.26_5.26.1-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu1 libpsl5_0.19.1-5build1 libreadline7_7.0-3 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu3 libsqlite3-0_3.22.0-1 libss2_1.44.1-1 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu3 libstdc++-7-dev_7.3.0-16ubuntu3 libstdc++6_8-20180414-1ubuntu2 libsystemd0_237-3ubuntu9 libtasn1-6_4.13-2 libtasn1-6-dev_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1ubuntu1 libtool_2.4.6-2 libubsan0_7.3.0-16ubuntu3 libudev1_237-3ubuntu9 libunbound2_1.6.7-1ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4ubuntu3 libwind0-heimdal_7.5.0+dfsg-1 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-18.19 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu3 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1-1ubuntu1 ncurses-bin_6.1-1ubuntu1 nettle-dev_3.4-1 openssl_1.1.0g-2ubuntu3 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6 perl-base_5.26.1-6 perl-modules-5.26_5.26.1-6 pinentry-curses_1.1.0-1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu1 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu9 systemd-sysv_237-3ubuntu9 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 time_1.7-25.1build1 tzdata_2018d-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Feb 15 11:14:18 2018 UTC gpgv: using RSA key 78DC68DB326D8438 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.7.1-1.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.7.1 dpkg-source: info: unpacking ncbi-blast+_2.7.1.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.7.1-1.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying support_x32 dpkg-source: info: applying suppress_gnutls_version_check dpkg-source: info: applying optionally_keep_sequence dpkg-source: info: applying fix_unit_tests dpkg-source: info: applying remove_embedded_mbedtls Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14355192 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14355192 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14355192 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.7.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ncbi-blast+-2.7.1 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean # dh clean -Dc++ --with autotools_dev dh clean -Dc++ dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:103: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1' debian/rules build-arch # dh build-arch -Dc++ --with autotools_dev dh build-arch -Dc++ dh_testdir -a -O-Dc\+\+ dh_update_autotools_config -a -O-Dc\+\+ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-mbedtls --with-symbols CFLAGS_FOR_BUILD="-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" \ || (tail -v -n +0 config.log BUILD/status/config.log; exit 1) configure: loading site script ./src/build-system/config.site configure: creating cache config.cache configure: WARNING: --with(out)-dbapi is deprecated configure: WARNING: please simply pass an appropriate project list checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether /usr/bin/gcc has an option to discard unneeded shared libraries... -Wl,--as-needed checking whether /usr/bin/gcc has an option to link in whole static archives... -Wl,--whole-archive checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking for dpkg-architecture... /usr/bin/dpkg-architecture checking for gawk... no checking for mawk... mawk checking for GNU make... /usr/bin/make checking for /usr/bin/make... /usr/bin/make checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for basename... /usr/bin/basename checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking how to run /bin/grep -E quietly... /bin/grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking for uuidgen... no checking for cd_reporter... no checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... (cached) yes checking size of size_t... 8 checking for amq... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes checking how to run the C preprocessor... gcc -E checking whether cross-directory hard links work... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking iostream.h usability... no checking iostream.h presence... no checking for iostream.h... no checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking fstream.h usability... no checking fstream.h presence... no checking for fstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking strstrea.h usability... no checking strstrea.h presence... no checking for strstrea.h... no checking for inttypes.h... 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/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++... configure: ...done configure: updating cache config.cache configure: creating /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/status/config.status config.status: creating /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/connect/services/Makefile config.status: creating /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/connect/Makefile config.status: creating /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/objects/cdd/Makefile config.status: creating /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/objects/featdef/Makefile config.status: creating /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/objects/seqsplit/Makefile config.status: creating /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/objects/pcsubstance/Makefile config.status: creating /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/objects/seqedit/Makefile config.status: creating 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is updated make[2]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' /usr/bin/make -f /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/build-system/helpers TMPL=run_with_lock -kw all make[3]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath-link,/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib -lm -lpthread -o run_with_lock /bin/bash /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/bin /bin/ln -f run_with_lock /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/bin/run_with_lock make[3]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' make[2]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' Platform not defined for Linux s390x -- please fix me project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/4.2.1/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' make[3]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.precompile): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[3] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[3] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib TMPL=corelib -w all make[4]: Entering directory 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-I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-s/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp: In function 'std::__cxx11::string ncbi::s_CArgs_ReadFromConsole(const string&, ncbi::EEchoInput, const char*)': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:2058:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, prompt.data(), prompt.length()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:2087:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, thx.data(), thx.length()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:854:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:35: /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include/corelib/ncbidiag.hpp:1810:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1824:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1912:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1944:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:3244:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:37: /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:362:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ trong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o //build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp: In static member function 'static bool ncbi::CThread::IsMain()': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp:516:9: warning: variable 'id' set but not used [-Wunused-but-set-variable] TID id = sx_ThreadId; ^~ usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-b/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp:516:12: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp:516:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ last+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_In file included from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/expr.cpp:36:0: /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include/corelib/expr.hpp:383:14: warning: mangled name for 'ncbi::CExprSymbol* ncbi::CExprParser::AddSymbol(const char*, VT) [with VT = double (*)(double, double) throw ()]' will change in C++17 because the exception specification is part of a function type [-Wnoexcept-type] CExprSymbol* CExprParser::AddSymbol(const char* name, VT value) ^~~~~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include/corelib/expr.hpp:383:14: warning: mangled name for 'ncbi::CExprSymbol* ncbi::CExprParser::AddSymbol(const char*, VT) [with VT = double (*)(double) throw ()]' will change in C++17 because the exception specification is part of a function type [-Wnoexcept-type] SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/guard.cpp -o guard.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/request_status.cpp -o request_status.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o -Wl,-rpath-link,/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib /bin/ln -f libxncbi.so /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/status/.xncbi.dep make[4]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib TMPL=test_mt -w all make[4]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_mt.o -Wl,-rpath-link,/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/status/.test_mt.dep make[4]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib TMPL=test_boost -w all /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In constructor 'ncbi::CNcbiTestApplication::CNcbiTestApplication()': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:925:39: error: invalid new-expression of abstract class type 'ncbi::CNcbiBoostLogger' m_Logger = new CNcbiBoostLogger(); ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:224:7: note: because the following virtual functions are pure within 'ncbi::CNcbiBoostLogger': class CNcbiBoostLogger : public TBoostLogFormatter ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17:0, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string) virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0; ^~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level) virtual void entry_context_finish( std::ostream& os, log_level l ) = 0; ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'void ncbi::CNcbiTestApplication::SetTestDisabled(boost::unit_test::test_unit*)': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:116:37: error: 'RUN_FILTERS' is not a member of 'boost::unit_test::runtime_config' RTCFG(std::vector, RUN_FILTERS, test_to_run) ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:997:9: note: in expansion of macro 'CONFIGURED_FILTERS' if (CONFIGURED_FILTERS.empty()) { ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'void ncbi::CNcbiTestApplication::x_SetupBoostReporters()': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1665:59: error: 'REPORT_FORMAT' is not a member of 'boost::unit_test::runtime_config' but::output_format format = RTCFG(but::output_format, REPORT_FORMAT, ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1693:57: error: 'LOG_FORMAT' is not a member of 'boost::unit_test::runtime_config' m_Logger->SetOutputFormat(RTCFG(but::output_format, LOG_FORMAT, ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'boost::unit_test::test_suite* ncbi::CNcbiTestApplication::InitTestFramework(int, char**)': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:116:37: error: 'RUN_FILTERS' is not a member of 'boost::unit_test::runtime_config' RTCFG(std::vector, RUN_FILTERS, test_to_run) ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1815:19: note: in expansion of macro 'CONFIGURED_FILTERS' && (!CONFIGURED_FILTERS.empty() || x_ReadConfiguration())) ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'virtual void ncbi::CNcbiBoostLogger::log_entry_context(std::ostream&, boost::unit_test::const_string)': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2130:43: error: no matching function for call to 'boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::const_string&)' m_Upper->log_entry_context(ostr, value); ^ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17:0, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: candidate: virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string) virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0; ^~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: candidate expects 3 arguments, 2 provided /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'virtual void ncbi::CNcbiBoostLogger::entry_context_finish(std::ostream&)': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2135:39: error: no matching function for call to 'boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&)' m_Upper->entry_context_finish(ostr); ^ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17:0, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: candidate: virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level) virtual void entry_context_finish( std::ostream& os, log_level l ) = 0; ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: candidate expects 2 arguments, 1 provided In file included from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2227:0: /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp: In constructor 'jetbrains::teamcity::TeamcityFormatterRegistrar::TeamcityFormatterRegistrar()': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:92:89: error: invalid new-expression of abstract class type 'jetbrains::teamcity::TeamcityBoostLogFormatter' boost::unit_test::unit_test_log.set_formatter(new TeamcityBoostLogFormatter()); ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:44:7: note: because the following virtual functions are pure within 'jetbrains::teamcity::TeamcityBoostLogFormatter': class TeamcityBoostLogFormatter: public boost::unit_test::unit_test_log_formatter { ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17:0, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string) virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0; ^~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level) virtual void entry_context_finish( std::ostream& os, log_level l ) = 0; ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:94:40: error: 'LOG_LEVEL' is not a member of 'boost::unit_test::runtime_config' (RTCFG(but::log_level, LOG_LEVEL, log_level)); ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In function 'int main(int, char**)': /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2266:25: error: 'WAIT_FOR_DEBUGGER' is not a member of 'boost::unit_test::runtime_config' if( RTCFG(bool, WAIT_FOR_DEBUGGER, wait_for_debugger) ) { ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2275:56: error: 'LIST_CONTENT' is not a member of 'boost::unit_test::runtime_config' output_format list_cont = RTCFG(output_format, LIST_CONTENT, ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2292:25: error: 'LIST_LABELS' is not a member of 'boost::unit_test::runtime_config' if( RTCFG(bool, LIST_LABELS, list_labels) ) { ^ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2319:56: error: 'RESULT_CODE' is not a member of 'boost::unit_test::runtime_config' runtime_config::get( runtime_config::RESULT_CODE ) ^~~~~~~~~~~ make[4]: *** [test_boost.o] Error 1 make[4]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp -o test_boost.o /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.rules:76: recipe for target 'test_boost.o' failed make[4]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' FAILED: src/corelib/Makefile.test_boost.lib make[4]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /bin/rm -f libtest_boost.so libtest_boost.so .test_boost.dep .libtest_boost.so.stamp /bin/rm -f /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/lib/libtest_boost.so /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/status/.test_boost.dep make[4]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/build-system/Makefile.meta_l:299: recipe for target 'all.nonusr' failed make[3]: *** [all.nonusr] Error 2 make[3]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/src/build-system/Makefile.meta_l:259: recipe for target 'all_l.real' failed make[2]: *** [all_l.real] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' ------------------------------------------------------ Current dir: /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/corelib [create_flat_makefile.sh] FAILED (status 2): make =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE MBEDTLS GMP GMP NETTLE NETTLE GNUTLS Boost.Spirit Boost.Test.Included LMDB LocalLMDB disabled: UUID FUSE LIBUNWIND LocalZ LocalBZ2 LZO LocalPCRE GCRYPT OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 GMOCK LAPACK LIBUV LIBSSH2 CASSANDRA LIBXLSXWRITER GRPC PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build && /usr/bin/make all_r or simply run /usr/bin/make in the current directory ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1' cd c++/BUILD/build && \ make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build' make[2]: Makefile.flat: No such file or directory make[2]: *** No rule to make target 'Makefile.flat'. Stop. make[2]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1/c++/BUILD/build' debian/rules:56: recipe for target 'override_dh_auto_build-arch' failed make[1]: *** [override_dh_auto_build-arch] Error 2 make[1]: Leaving directory '/build/ncbi-blast+-4hspPJ/ncbi-blast+-2.7.1' debian/rules:128: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20180421-1221 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /build/ncbi-blast+-4hspPJ Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 385376 Build-Time: 178 Distribution: bionic-proposed Fail-Stage: build Host Architecture: s390x Install-Time: 11 Job: ncbi-blast+_2.7.1-1.dsc Machine Architecture: s390x Package: ncbi-blast+ Package-Time: 191 Source-Version: 2.7.1-1 Space: 385376 Status: attempted Version: 2.7.1-1 -------------------------------------------------------------------------------- Finished at 20180421-1221 Build needed 00:03:11, 385376k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14355192 Scanning for processes to kill in build PACKAGEBUILD-14355192 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14355192 Stopping target for build PACKAGEBUILD-14355192 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-14355192 Removing build PACKAGEBUILD-14355192