https://launchpad.net/ubuntu/+source/ncbi-blast+/2.7.1-1/+build/14355187 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-026 4.4.0-119-generic #143-Ubuntu SMP Mon Apr 2 16:08:24 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_160 python-lpbuildd_160 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 21 Apr 11:54:54 ntpdate[1807]: adjust time server 10.211.37.1 offset -0.014281 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14355187 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-14355187 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14355187 Starting target for build PACKAGEBUILD-14355187 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14355187 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14355187 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14355187 Updating target for build PACKAGEBUILD-14355187 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 Packages [1021 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe amd64 Packages [8561 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4941 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 Packages [14.2 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [7712 B] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 Packages [30.8 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [20.0 kB] Fetched 15.7 MB in 6s (2445 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgssapi-krb5-2 libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 libustr-1.0-1 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: dirmngr gcc-8-base gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libargon2-0 libcom-err2 libcryptsetup12 libext2fs2 libgdbm-compat4 libgdbm5 libisl19 libjson-c3 libmpfr6 libnghttp2-14 libssl1.1 libunistring2 libzstd1 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-7 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot fdisk findutils g++ g++-7 gcc gcc-7 gcc-7-base gnupg gnupg-agent gpgv hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan4 libasn1-8-heimdal libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi6 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libidn2-0 libip4tc0 libisl15 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libmpc3 libmpx2 libncurses5 libncursesw5 libnettle6 libnpth0 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.26 libpng16-16 libprocps6 libpsl5 libquadmath0 libreadline7 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make mawk mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata ubuntu-keyring util-linux 161 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 73.5 MB of archives. After this operation, 16.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main amd64 base-files amd64 10.1ubuntu1 [58.2 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 debianutils amd64 4.8.4 [85.7 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 bash amd64 4.4.18-2ubuntu1 [614 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdutils amd64 1:2.31.1-0.4ubuntu3 [60.2 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 coreutils amd64 8.28-1ubuntu1 [1231 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 perl-modules-5.26 all 5.26.1-6 [2760 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 libgdbm5 amd64 1.14.1-6 [26.0 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 libgdbm-compat4 amd64 1.14.1-6 [6084 B] Get:9 http://ftpmaster.internal/ubuntu bionic/main amd64 libperl5.26 amd64 5.26.1-6 [3532 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 perl amd64 5.26.1-6 [201 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main amd64 perl-base amd64 5.26.1-6 [1391 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6-dev amd64 2.27-3ubuntu1 [2587 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-dev-bin amd64 2.27-3ubuntu1 [71.8 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 linux-libc-dev amd64 4.15.0-18.19 [1017 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6 amd64 2.27-3ubuntu1 [2824 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-bin amd64 2.27-3ubuntu1 [641 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-8-base amd64 8-20180414-1ubuntu2 [18.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcc1 amd64 1:8-20180414-1ubuntu2 [41.0 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 libzstd1 amd64 1.3.3+dfsg-2ubuntu1 [189 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg amd64 1.19.0.5ubuntu2 [1139 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 dash amd64 0.5.8-2.10 [88.5 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 libcom-err2 amd64 1.44.1-1 [9860 B] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 libcomerr2 amd64 1.44.1-1 [2696 B] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 libext2fs2 amd64 1.44.1-1 [158 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fslibs amd64 1.44.1-1 [2700 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fsprogs amd64 1.44.1-1 [390 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 findutils amd64 4.6.0+git+20170828-2 [291 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 hostname amd64 3.20 [11.3 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 login amd64 1:4.5-1ubuntu1 [307 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 libncurses5 amd64 6.1-1ubuntu1 [95.2 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 libtinfo5 amd64 6.1-1ubuntu1 [80.7 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 ncurses-bin amd64 6.1-1ubuntu1 [163 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main amd64 libncursesw5 amd64 6.1-1ubuntu1 [117 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 sed amd64 4.4-2 [182 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main amd64 libuuid1 amd64 2.31.1-0.4ubuntu3 [19.9 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 libblkid1 amd64 2.31.1-0.4ubuntu3 [124 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 libsmartcols1 amd64 2.31.1-0.4ubuntu3 [83.6 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 libfdisk1 amd64 2.31.1-0.4ubuntu3 [164 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre3 amd64 2:8.39-9 [229 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 libselinux1 amd64 2.7-2build2 [68.2 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main amd64 libmount1 amd64 2.31.1-0.4ubuntu3 [136 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 fdisk amd64 2.31.1-0.4ubuntu3 [108 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 util-linux amd64 2.31.1-0.4ubuntu3 [902 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 base-passwd amd64 3.5.44 [47.2 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main amd64 init-system-helpers all 1.51 [37.3 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 ncurses-base all 6.1-1ubuntu1 [17.3 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 sysvinit-utils amd64 2.88dsf-59.10ubuntu1 [18.6 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 liblz4-1 amd64 0.0~r131-2ubuntu3 [48.1 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 libstdc++6 amd64 8-20180414-1ubuntu2 [399 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libudev1 amd64 237-3ubuntu9 [53.7 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 libapt-pkg5.0 amd64 1.6.1 [801 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main amd64 libaudit-common all 1:2.8.2-1ubuntu1 [4132 B] Get:53 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap-ng0 amd64 0.7.7-3.1 [11.1 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main amd64 libaudit1 amd64 1:2.8.2-1ubuntu1 [38.9 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main amd64 debconf all 1.5.66 [124 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main amd64 libpam0g amd64 1.1.8-3.6ubuntu2 [55.1 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage-common all 2.7-2build2 [6904 B] Get:58 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage1 amd64 2.7-2build2 [84.6 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main amd64 libpam-modules-bin amd64 1.1.8-3.6ubuntu2 [36.7 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main amd64 libpam-modules amd64 1.1.8-3.6ubuntu2 [242 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main amd64 passwd amd64 1:4.5-1ubuntu1 [816 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main amd64 adduser all 3.116ubuntu1 [163 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main amd64 libgpg-error0 amd64 1.27-6 [38.0 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcrypt20 amd64 1.8.1-4ubuntu1 [418 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgv amd64 2.2.4-1ubuntu1 [196 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main amd64 ubuntu-keyring all 2018.02.28 [20.7 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main amd64 libunistring2 amd64 0.9.9-0ubuntu1 [369 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main amd64 libgmp10 amd64 2:6.1.2+dfsg-2 [240 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main amd64 libnettle6 amd64 3.4-1 [109 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main amd64 libhogweed4 amd64 3.4-1 [137 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main amd64 libidn2-0 amd64 2.0.4-1.1build2 [48.2 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main amd64 libffi6 amd64 3.2.1-8 [17.9 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main amd64 libp11-kit0 amd64 0.23.9-2 [187 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main amd64 libtasn1-6 amd64 4.13-2 [36.2 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main amd64 libgnutls30 amd64 3.5.18-1ubuntu1 [644 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu4 [37.6 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main amd64 apt amd64 1.6.1 [1166 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main amd64 libargon2-0 amd64 0~20161029-1.1 [19.9 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main amd64 libjson-c3 amd64 0.12.1-1.3 [21.4 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main amd64 libdevmapper1.02.1 amd64 2:1.02.145-4.1ubuntu3 [127 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main amd64 libcryptsetup12 amd64 2:2.0.2-1ubuntu1 [134 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main amd64 libapparmor1 amd64 2.12-4ubuntu5 [31.5 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap2 amd64 1:2.25-1.2 [13.0 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main amd64 libidn11 amd64 1.33-2.1ubuntu1 [45.7 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main amd64 libip4tc0 amd64 1.6.1-2ubuntu2 [19.6 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main amd64 libkmod2 amd64 24-1ubuntu3 [40.1 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main amd64 mount amd64 2.31.1-0.4ubuntu3 [107 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main amd64 libprocps6 amd64 2:3.3.12-3ubuntu1 [31.4 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main amd64 lsb-base all 9.20170808ubuntu1 [12.5 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main amd64 procps amd64 2:3.3.12-3ubuntu1 [225 kB] Get:91 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 systemd amd64 237-3ubuntu9 [2892 kB] Get:92 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libsystemd0 amd64 237-3ubuntu9 [204 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main amd64 mawk amd64 1.3.3-17ubuntu3 [81.5 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main amd64 init amd64 1.51 [5864 B] Get:95 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 systemd-sysv amd64 237-3ubuntu9 [11.6 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main amd64 libpam-runtime all 1.1.8-3.6ubuntu2 [37.0 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main amd64 libss2 amd64 1.44.1-1 [11.1 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/main amd64 sensible-utils all 0.0.12 [14.8 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main amd64 libssl1.1 amd64 1.1.0g-2ubuntu3 [1128 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main amd64 openssl amd64 1.1.0g-2ubuntu3 [532 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main amd64 ca-certificates all 20180409 [151 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main amd64 dmsetup amd64 2:1.02.145-4.1ubuntu3 [74.5 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main amd64 readline-common all 7.0-3 [52.9 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main amd64 libreadline7 amd64 7.0-3 [124 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main amd64 libslang2 amd64 2.3.1a-3ubuntu1 [424 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/main amd64 libsqlite3-0 amd64 3.22.0-1 [496 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main amd64 tzdata all 2018d-1 [188 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main amd64 libgssapi-krb5-2 amd64 1.16-2build1 [122 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main amd64 libkrb5-3 amd64 1.16-2build1 [279 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main amd64 libk5crypto3 amd64 1.16-2build1 [85.6 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main amd64 libkrb5support0 amd64 1.16-2build1 [31.1 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main amd64 libkeyutils1 amd64 1.5.9-9.2ubuntu2 [8720 B] Get:113 http://ftpmaster.internal/ubuntu bionic/main amd64 libpng16-16 amd64 1.6.34-1 [176 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main amd64 libpsl5 amd64 0.19.1-5build1 [41.8 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main amd64 libssl1.0.0 amd64 1.0.2n-1ubuntu5 [1087 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/main amd64 multiarch-support amd64 2.27-3ubuntu1 [6916 B] Get:117 http://ftpmaster.internal/ubuntu bionic/main amd64 advancecomp amd64 2.1-1 [200 kB] Get:118 http://ftpmaster.internal/ubuntu bionic/universe amd64 apt-transport-https all 1.6.1 [1692 B] Get:119 http://ftpmaster.internal/ubuntu bionic/main amd64 libbinutils amd64 2.30-15ubuntu1 [503 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils amd64 2.30-15ubuntu1 [3392 B] Get:121 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils-common amd64 2.30-15ubuntu1 [193 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils-x86-64-linux-gnu amd64 2.30-15ubuntu1 [1856 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main amd64 libquadmath0 amd64 8-20180414-1ubuntu2 [134 kB] Get:124 http://ftpmaster.internal/ubuntu bionic/main amd64 libitm1 amd64 8-20180414-1ubuntu2 [28.1 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main amd64 libmpx2 amd64 8-20180414-1ubuntu2 [11.7 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main amd64 libgomp1 amd64 8-20180414-1ubuntu2 [76.8 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main amd64 libatomic1 amd64 8-20180414-1ubuntu2 [9084 B] Get:128 http://ftpmaster.internal/ubuntu bionic/main amd64 libasan4 amd64 7.3.0-16ubuntu3 [359 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main amd64 liblsan0 amd64 8-20180414-1ubuntu2 [133 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main amd64 libtsan0 amd64 8-20180414-1ubuntu2 [289 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main amd64 libubsan0 amd64 7.3.0-16ubuntu3 [126 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main amd64 libcilkrts5 amd64 7.3.0-16ubuntu3 [42.5 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main amd64 g++-7 amd64 7.3.0-16ubuntu3 [7566 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-7 amd64 7.3.0-16ubuntu3 [7445 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main amd64 libstdc++-7-dev amd64 7.3.0-16ubuntu3 [1461 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcc-7-dev amd64 7.3.0-16ubuntu3 [2378 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main amd64 libcc1-0 amd64 8-20180414-1ubuntu2 [39.5 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main amd64 cpp-7 amd64 7.3.0-16ubuntu3 [6734 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-7-base amd64 7.3.0-16ubuntu3 [18.8 kB] Get:140 http://ftpmaster.internal/ubuntu bionic/main amd64 libisl19 amd64 0.19-1 [551 kB] Get:141 http://ftpmaster.internal/ubuntu bionic/main amd64 libmpc3 amd64 1.1.0-1 [40.8 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main amd64 libmpfr6 amd64 4.0.1-1 [243 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/main amd64 cpp amd64 4:7.3.0-3ubuntu2 [27.5 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc amd64 4:7.3.0-3ubuntu2 [5192 B] Get:145 http://ftpmaster.internal/ubuntu bionic/main amd64 g++ amd64 4:7.3.0-3ubuntu2 [1576 B] Get:146 http://ftpmaster.internal/ubuntu bionic/main amd64 make amd64 4.1-9.1ubuntu1 [154 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg-dev all 1.19.0.5ubuntu2 [607 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/main amd64 libdpkg-perl all 1.19.0.5ubuntu2 [211 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/main amd64 patch amd64 2.7.6-2ubuntu1 [102 kB] Get:150 http://ftpmaster.internal/ubuntu bionic/main amd64 build-essential amd64 12.4ubuntu1 [4758 B] Get:151 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg-l10n all 2.2.4-1ubuntu1 [48.6 kB] Get:152 http://ftpmaster.internal/ubuntu 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Setting up openssl (1.1.0g-2ubuntu3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libsqlite3-0:amd64 (3.22.0-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu3) ... Setting up libmpc3:amd64 (1.1.0-1) ... Setting up libc-dev-bin (2.27-3ubuntu1) ... Setting up libcomerr2:amd64 (1.44.1-1) ... Setting up libgdbm-compat4:amd64 (1.14.1-6) ... Setting up libkeyutils1:amd64 (1.5.9-9.2ubuntu2) ... Setting up ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 8 added, 23 removed; done. Setting up libc6-dev:amd64 (2.27-3ubuntu1) ... Setting up libslang2:amd64 (2.3.1a-3ubuntu1) ... Setting up libassuan0:amd64 (2.5.1-2) ... Setting up libitm1:amd64 (8-20180414-1ubuntu2) ... Setting up libisl19:amd64 (0.19-1) ... Setting up libk5crypto3:amd64 (1.16-2build1) ... Setting up pkgbinarymangler (138) ... Setting up libwind0-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libasan4:amd64 (7.3.0-16ubuntu3) ... 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Setting up binutils-x86-64-linux-gnu (2.30-15ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu2) ... Setting up gpg-agent (2.2.4-1ubuntu1) ... Installing new version of config file /etc/X11/Xsession.d/90gpg-agent ... Setting up gpg-wks-server (2.2.4-1ubuntu1) ... Setting up gpg-wks-client (2.2.4-1ubuntu1) ... Setting up libgssapi-krb5-2:amd64 (1.16-2build1) ... Setting up perl (5.26.1-6) ... Setting up binutils (2.30-15ubuntu1) ... Setting up gnupg-agent (2.2.4-1ubuntu1) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up gcc-7 (7.3.0-16ubuntu3) ... Setting up g++-7 (7.3.0-16ubuntu3) ... Setting up libcurl3-gnutls:amd64 (7.58.0-2ubuntu3) ... Setting up gnupg (2.2.4-1ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu2) ... Setting up gcc (4:7.3.0-3ubuntu2) ... Setting up dpkg-dev (1.19.0.5ubuntu2) ... Setting up g++ (4:7.3.0-3ubuntu2) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14355187 amd64 bionic-proposed -c chroot:build-PACKAGEBUILD-14355187 --arch=amd64 --dist=bionic-proposed --nolog -A ncbi-blast+_2.7.1-1.dsc Initiating build PACKAGEBUILD-14355187 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-119-generic #143-Ubuntu SMP Mon Apr 2 16:08:24 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-026.buildd +==============================================================================+ | ncbi-blast+ 2.7.1-1 (amd64) 21 Apr 2018 11:56 | +==============================================================================+ Package: ncbi-blast+ Version: 2.7.1-1 Source Version: 2.7.1-1 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-kv5bZw' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14355187/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ncbi-blast+_2.7.1-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-kv5bZw/resolver-23BXSx/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-kv5bZw/resolver-23BXSx/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-kv5bZw/resolver-23BXSx/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-kv5bZw/resolver-23BXSx/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-kv5bZw/resolver-23BXSx/apt_archive ./ Sources [214 B] Get:5 copy:/build/ncbi-blast+-kv5bZw/resolver-23BXSx/apt_archive ./ Packages [529 B] Fetched 2862 B in 0s (78.0 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgssapi-krb5-2 libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 libustr-1.0-1 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-kv5bZw/resolver-23BXSx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12989 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-kv5bZw/resolver-xs7v6z/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-kv5bZw/resolver-xs7v6z/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-kv5bZw/resolver-xs7v6z/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-kv5bZw/resolver-xs7v6z/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-kv5bZw/resolver-xs7v6z/apt_archive ./ Sources [272 B] Get:5 copy:/build/ncbi-blast+-kv5bZw/resolver-xs7v6z/apt_archive ./ Packages [588 B] Fetched 2979 B in 0s (41.1 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ncbi-blast+ build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgssapi-krb5-2 libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 libustr-1.0-1 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.65-dev libboost-test1.65.1 libboost1.65-dev libbsd0 libbz2-dev libcroco3 libevent-2.1-6 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dane0 libgnutls-openssl27 libgnutls28-dev libgnutlsxx28 libicu60 libidn2-0-dev libidn2-dev libmagic-mgc libmagic1 libmbedcrypto1 libmbedtls-dev libmbedtls10 libmbedx509-0 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtimedate-perl libtool libunbound2 libxml2 m4 man-db nettle-dev po-debconf time zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.65-doc libboost-atomic1.65-dev libboost-chrono1.65-dev libboost-container1.65-dev libboost-context1.65-dev libboost-coroutine1.65-dev libboost-date-time1.65-dev libboost-exception1.65-dev libboost-fiber1.65-dev libboost-filesystem1.65-dev libboost-graph1.65-dev libboost-graph-parallel1.65-dev libboost-iostreams1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-program-options1.65-dev libboost-python1.65-dev libboost-random1.65-dev libboost-regex1.65-dev libboost-serialization1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-system1.65-dev libboost-thread1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-doc gnutls-bin libmbedtls-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libtasn1-doc libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.65-dev libboost-test1.65.1 libboost1.65-dev libbsd0 libbz2-dev libcroco3 libevent-2.1-6 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dane0 libgnutls-openssl27 libgnutls28-dev libgnutlsxx28 libicu60 libidn2-0-dev libidn2-dev libmagic-mgc libmagic1 libmbedcrypto1 libmbedtls-dev libmbedtls10 libmbedx509-0 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtimedate-perl libtool libunbound2 libxml2 m4 man-db nettle-dev po-debconf sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 58 newly installed, 1 to remove and 0 not upgraded. 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Get:1 copy:/build/ncbi-blast+-kv5bZw/resolver-xs7v6z/apt_archive ./ sbuild-build-depends-ncbi-blast+-dummy 0.invalid.0 [924 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 libbsd0 amd64 0.8.7-1 [41.5 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdmainutils amd64 11.1.2ubuntu1 [181 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 groff-base amd64 1.22.3-10 [1153 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 libpipeline1 amd64 1.5.0-1 [25.3 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 man-db amd64 2.8.3-2 [1019 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic-mgc amd64 1:5.32-2 [184 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic1 amd64 1:5.32-2 [68.5 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main amd64 file amd64 1:5.32-2 [22.1 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 libglib2.0-0 amd64 2.56.1-2ubuntu1 [1167 kB] Get:11 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3.5.18-1ubuntu1 [659 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/universe amd64 libmbedcrypto1 amd64 2.8.0-1 [140 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/universe amd64 libmbedx509-0 amd64 2.8.0-1 [34.0 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/universe amd64 libmbedtls10 amd64 2.8.0-1 [66.8 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/universe amd64 libmbedtls-dev amd64 2.8.0-1 [382 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre16-3 amd64 2:8.39-9 [147 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre32-3 amd64 2:8.39-9 [138 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcrecpp0v5 amd64 2:8.39-9 [15.3 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre3-dev amd64 2:8.39-9 [537 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.6 MB in 1s (29.8 MB/s) (Reading database ... 12989 files and directories currently installed.) 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Not building database; man-db/auto-update is not 'true'. Setting up nettle-dev:amd64 (3.4-1) ... Setting up libboost-test-dev:amd64 (1.65.1.0ubuntu1) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up libgnutls28-dev:amd64 (3.5.18-1ubuntu1) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up debhelper (11.1.6ubuntu1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... (Reading database ... 29043 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-119-generic amd64 (x86_64) Toolchain package versions: binutils_2.30-15ubuntu1 dpkg-dev_1.19.0.5ubuntu2 g++-7_7.3.0-16ubuntu3 gcc-7_7.3.0-16ubuntu3 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-16ubuntu3 libstdc++6_8-20180414-1ubuntu2 linux-libc-dev_4.15.0-18.19 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 apt-transport-https_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1ubuntu1 base-passwd_3.5.44 bash_4.4.18-2ubuntu1 binutils_2.30-15ubuntu1 binutils-common_2.30-15ubuntu1 binutils-x86-64-linux-gnu_2.30-15ubuntu1 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.31.1-0.4ubuntu3 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20180409 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libcurl3-gnutls_7.58.0-2ubuntu3 libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu2 libevent-2.1-6_2.1.8-stable-4build1 libext2fs2_1.44.1-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.3.0-16ubuntu3 libgcc1_1:8-20180414-1ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp-dev_2:6.1.2+dfsg-2 libgmp10_2:6.1.2+dfsg-2 libgmpxx4ldbl_2:6.1.2+dfsg-2 libgnutls-dane0_3.5.18-1ubuntu1 libgnutls-openssl27_3.5.18-1ubuntu1 libgnutls28-dev_3.5.18-1ubuntu1 libgnutls30_3.5.18-1ubuntu1 libgnutlsxx28_3.5.18-1ubuntu1 libgomp1_8-20180414-1ubuntu2 libgpg-error0_1.27-6 libgssapi-krb5-2_1.16-2build1 libgssapi3-heimdal_7.5.0+dfsg-1 libhcrypto4-heimdal_7.5.0+dfsg-1 libheimbase1-heimdal_7.5.0+dfsg-1 libheimntlm0-heimdal_7.5.0+dfsg-1 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libidn2-0-dev_2.0.4-1.1build2 libidn2-dev_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180414-1ubuntu2 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu2 libkmod2_24-1ubuntu3 libkrb5-26-heimdal_7.5.0+dfsg-1 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8-20180414-1ubuntu2 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmbedcrypto1_2.8.0-1 libmbedtls-dev_2.8.0-1 libmbedtls10_2.8.0-1 libmbedx509-0_2.8.0-1 libmount1_2.31.1-0.4ubuntu3 libmpc3_1.1.0-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libmpx2_8-20180414-1ubuntu2 libncurses5_6.1-1ubuntu1 libncursesw5_6.1-1ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.30.0-1ubuntu1 libnpth0_1.5-3 libp11-kit-dev_0.23.9-2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.26_5.26.1-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu1 libpsl5_0.19.1-5build1 libquadmath0_8-20180414-1ubuntu2 libreadline7_7.0-3 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu3 libsqlite3-0_3.22.0-1 libss2_1.44.1-1 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu3 libstdc++-7-dev_7.3.0-16ubuntu3 libstdc++6_8-20180414-1ubuntu2 libsystemd0_237-3ubuntu9 libtasn1-6_4.13-2 libtasn1-6-dev_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1ubuntu1 libtool_2.4.6-2 libtsan0_8-20180414-1ubuntu2 libubsan0_7.3.0-16ubuntu3 libudev1_237-3ubuntu9 libunbound2_1.6.7-1ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4ubuntu3 libwind0-heimdal_7.5.0+dfsg-1 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-18.19 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu3 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1-1ubuntu1 ncurses-bin_6.1-1ubuntu1 nettle-dev_3.4-1 openssl_1.1.0g-2ubuntu3 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6 perl-base_5.26.1-6 perl-modules-5.26_5.26.1-6 pinentry-curses_1.1.0-1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu1 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu9 systemd-sysv_237-3ubuntu9 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 time_1.7-25.1build1 tzdata_2018d-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Feb 15 11:14:18 2018 UTC gpgv: using RSA key 78DC68DB326D8438 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.7.1-1.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.7.1 dpkg-source: info: unpacking ncbi-blast+_2.7.1.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.7.1-1.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying support_x32 dpkg-source: info: applying suppress_gnutls_version_check dpkg-source: info: applying optionally_keep_sequence dpkg-source: info: applying fix_unit_tests dpkg-source: info: applying remove_embedded_mbedtls Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14355187 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14355187 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14355187 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.7.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ncbi-blast+-2.7.1 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean # dh clean -Dc++ --with autotools_dev dh clean -Dc++ dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:103: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1' debian/rules build # dh build -Dc++ --with autotools_dev dh build -Dc++ dh_testdir -O-Dc\+\+ dh_update_autotools_config -O-Dc\+\+ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-mbedtls --with-symbols CFLAGS_FOR_BUILD="-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" \ || (tail -v -n +0 config.log BUILD/status/config.log; exit 1) configure: loading site script ./src/build-system/config.site configure: creating cache config.cache configure: WARNING: --with(out)-dbapi is deprecated configure: WARNING: please simply pass an appropriate project list checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether /usr/bin/gcc has an option to discard unneeded shared libraries... -Wl,--as-needed checking whether /usr/bin/gcc has an option to link in whole static archives... -Wl,--whole-archive checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking for dpkg-architecture... /usr/bin/dpkg-architecture checking for gawk... no checking for mawk... mawk checking for GNU make... /usr/bin/make checking for /usr/bin/make... /usr/bin/make checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for basename... /usr/bin/basename checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking how to run /bin/grep -E quietly... /bin/grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking for uuidgen... no checking for cd_reporter... no checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... 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updated /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc/common/ncbi_build_ver.h is updated make[2]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' /usr/bin/make -f /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/build-system/helpers TMPL=run_with_lock -kw all make[3]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath-link,/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib -lm -lpthread -o run_with_lock /bin/bash /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/bin /bin/ln -f run_with_lock /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/bin/run_with_lock make[3]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' make[2]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers' project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/Linux64/4.2.1/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' make[3]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.precompile): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[3] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[3] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib TMPL=corelib -w all make[4]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-s/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp: In function 'std::__cxx11::string ncbi::s_CArgs_ReadFromConsole(const string&, ncbi::EEchoInput, const char*)': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:2058:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, prompt.data(), prompt.length()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:2087:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, thx.data(), thx.length()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:854:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:35: /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include/corelib/ncbidiag.hpp:1810:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1824:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1912:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1944:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:3244:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:37: /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:362:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ trong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o //build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp: In static member function 'static bool ncbi::CThread::IsMain()': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp:516:9: warning: variable 'id' set but not used [-Wunused-but-set-variable] TID id = sx_ThreadId; ^~ usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-b/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp:516:12: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp:516:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ last+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_In file included from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/expr.cpp:36:0: /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include/corelib/expr.hpp:383:14: warning: mangled name for 'ncbi::CExprSymbol* ncbi::CExprParser::AddSymbol(const char*, VT) [with VT = double (*)(double, double) throw ()]' will change in C++17 because the exception specification is part of a function type [-Wnoexcept-type] CExprSymbol* CExprParser::AddSymbol(const char* name, VT value) ^~~~~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include/corelib/expr.hpp:383:14: warning: mangled name for 'ncbi::CExprSymbol* ncbi::CExprParser::AddSymbol(const char*, VT) [with VT = double (*)(double) throw ()]' will change in C++17 because the exception specification is part of a function type [-Wnoexcept-type] SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/guard.cpp -o guard.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/request_status.cpp -o request_status.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o -Wl,-rpath-link,/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib /bin/ln -f libxncbi.so /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/status/.xncbi.dep make[4]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib TMPL=test_mt -w all make[4]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_mt.o -Wl,-rpath-link,/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/status/.test_mt.dep make[4]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib TMPL=test_boost -w all /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In constructor 'ncbi::CNcbiTestApplication::CNcbiTestApplication()': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:925:39: error: invalid new-expression of abstract class type 'ncbi::CNcbiBoostLogger' m_Logger = new CNcbiBoostLogger(); ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:224:7: note: because the following virtual functions are pure within 'ncbi::CNcbiBoostLogger': class CNcbiBoostLogger : public TBoostLogFormatter ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17:0, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string) virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0; ^~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level) virtual void entry_context_finish( std::ostream& os, log_level l ) = 0; ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'void ncbi::CNcbiTestApplication::SetTestDisabled(boost::unit_test::test_unit*)': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:116:37: error: 'RUN_FILTERS' is not a member of 'boost::unit_test::runtime_config' RTCFG(std::vector, RUN_FILTERS, test_to_run) ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:997:9: note: in expansion of macro 'CONFIGURED_FILTERS' if (CONFIGURED_FILTERS.empty()) { ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'void ncbi::CNcbiTestApplication::x_SetupBoostReporters()': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1665:59: error: 'REPORT_FORMAT' is not a member of 'boost::unit_test::runtime_config' but::output_format format = RTCFG(but::output_format, REPORT_FORMAT, ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1693:57: error: 'LOG_FORMAT' is not a member of 'boost::unit_test::runtime_config' m_Logger->SetOutputFormat(RTCFG(but::output_format, LOG_FORMAT, ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'boost::unit_test::test_suite* ncbi::CNcbiTestApplication::InitTestFramework(int, char**)': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:116:37: error: 'RUN_FILTERS' is not a member of 'boost::unit_test::runtime_config' RTCFG(std::vector, RUN_FILTERS, test_to_run) ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1815:19: note: in expansion of macro 'CONFIGURED_FILTERS' && (!CONFIGURED_FILTERS.empty() || x_ReadConfiguration())) ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'virtual void ncbi::CNcbiBoostLogger::log_entry_context(std::ostream&, boost::unit_test::const_string)': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2130:43: error: no matching function for call to 'boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::const_string&)' m_Upper->log_entry_context(ostr, value); ^ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17:0, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: candidate: virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string) virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0; ^~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: candidate expects 3 arguments, 2 provided /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'virtual void ncbi::CNcbiBoostLogger::entry_context_finish(std::ostream&)': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2135:39: error: no matching function for call to 'boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&)' m_Upper->entry_context_finish(ostr); ^ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17:0, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: candidate: virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level) virtual void entry_context_finish( std::ostream& os, log_level l ) = 0; ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: candidate expects 2 arguments, 1 provided In file included from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2227:0: /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp: In constructor 'jetbrains::teamcity::TeamcityFormatterRegistrar::TeamcityFormatterRegistrar()': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:92:89: error: invalid new-expression of abstract class type 'jetbrains::teamcity::TeamcityBoostLogFormatter' boost::unit_test::unit_test_log.set_formatter(new TeamcityBoostLogFormatter()); ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:44:7: note: because the following virtual functions are pure within 'jetbrains::teamcity::TeamcityBoostLogFormatter': class TeamcityBoostLogFormatter: public boost::unit_test::unit_test_log_formatter { ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17:0, from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19, from /usr/include/boost/test/included/unit_test.hpp:18, from /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70: /usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string) virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0; ^~~~~~~~~~~~~~~~~ /usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level) virtual void entry_context_finish( std::ostream& os, log_level l ) = 0; ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:94:40: error: 'LOG_LEVEL' is not a member of 'boost::unit_test::runtime_config' (RTCFG(but::log_level, LOG_LEVEL, log_level)); ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In function 'int main(int, char**)': /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2266:25: error: 'WAIT_FOR_DEBUGGER' is not a member of 'boost::unit_test::runtime_config' if( RTCFG(bool, WAIT_FOR_DEBUGGER, wait_for_debugger) ) { ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2275:56: error: 'LIST_CONTENT' is not a member of 'boost::unit_test::runtime_config' output_format list_cont = RTCFG(output_format, LIST_CONTENT, ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2292:25: error: 'LIST_LABELS' is not a member of 'boost::unit_test::runtime_config' if( RTCFG(bool, LIST_LABELS, list_labels) ) { ^ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG' but::runtime_config::get(but::runtime_config::new_name) ^~~~~~~~ /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2319:56: error: 'RESULT_CODE' is not a member of 'boost::unit_test::runtime_config' runtime_config::get( runtime_config::RESULT_CODE ) ^~~~~~~~~~~ make[4]: *** [test_boost.o] Error 1 make[4]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp -o test_boost.o /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.rules:76: recipe for target 'test_boost.o' failed make[4]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' FAILED: src/corelib/Makefile.test_boost.lib make[4]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /bin/rm -f libtest_boost.so libtest_boost.so .test_boost.dep .libtest_boost.so.stamp /bin/rm -f /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/lib/libtest_boost.so /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/status/.test_boost.dep make[4]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/build-system/Makefile.meta_l:299: recipe for target 'all.nonusr' failed make[3]: *** [all.nonusr] Error 2 make[3]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/src/build-system/Makefile.meta_l:259: recipe for target 'all_l.real' failed make[2]: *** [all_l.real] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib' ------------------------------------------------------ Current dir: /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/corelib [create_flat_makefile.sh] FAILED (status 2): make =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE MBEDTLS GMP GMP NETTLE NETTLE GNUTLS Boost.Spirit Boost.Test.Included LMDB LocalLMDB disabled: UUID FUSE LIBUNWIND LocalZ LocalBZ2 LZO LocalPCRE GCRYPT OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 GMOCK LAPACK LIBUV LIBSSH2 CASSANDRA LIBXLSXWRITER GRPC PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build && /usr/bin/make all_r or simply run /usr/bin/make in the current directory ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1' cd c++/BUILD/build && \ make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build' make[2]: Makefile.flat: No such file or directory make[2]: *** No rule to make target 'Makefile.flat'. Stop. make[2]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1/c++/BUILD/build' debian/rules:56: recipe for target 'override_dh_auto_build-arch' failed make[1]: *** [override_dh_auto_build-arch] Error 2 make[1]: Leaving directory '/build/ncbi-blast+-kv5bZw/ncbi-blast+-2.7.1' debian/rules:128: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20180421-1203 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /build/ncbi-blast+-kv5bZw Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 388648 Build-Time: 354 Distribution: bionic-proposed Fail-Stage: build Host Architecture: amd64 Install-Time: 29 Job: ncbi-blast+_2.7.1-1.dsc Machine Architecture: amd64 Package: ncbi-blast+ Package-Time: 388 Source-Version: 2.7.1-1 Space: 388648 Status: attempted Version: 2.7.1-1 -------------------------------------------------------------------------------- Finished at 20180421-1203 Build needed 00:06:28, 388648k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14355187 Scanning for processes to kill in build PACKAGEBUILD-14355187 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14355187 Stopping target for build PACKAGEBUILD-14355187 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14355187 Removing build PACKAGEBUILD-14355187