RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux z13-013 4.4.0-31-generic #50-Ubuntu SMP Wed Jul 13 00:19:48 UTC 2016 s390x Buildd toolchain package versions: launchpad-buildd_138 python-lpbuildd_138 sbuild_0.67.0-2ubuntu7 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.2. Syncing the system clock with the buildd NTP service... 6 Aug 17:18:14 ntpdate[43142]: adjust time server 10.211.37.1 offset -0.000449 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-10573704', '/home/buildd/filecache-default/4c2dc15a2bd8eb52aaecab56c2b5c3013e453e5b'] Unpacking chroot for build PACKAGEBUILD-10573704 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-10573704'] Mounting chroot for build PACKAGEBUILD-10573704 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-10573704', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-10573704 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-10573704', 's390x'] Updating debian chroot for build PACKAGEBUILD-10573704 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main s390x Packages [1127 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [565 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe s390x Packages [7439 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4486 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main s390x Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe s390x Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main s390x Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe s390x Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x Packages [127 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [52.3 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe s390x Packages [571 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [242 kB] Fetched 15.1 MB in 43s (351 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libpng12-0 libprocps4 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-6 g++-6 gcc-6 libcap-ng0 libgcc-6-dev libpng16-16 libprocps6 libstdc++-6-dev The following packages will be upgraded: apt apt-transport-https base-files bash binutils bsdutils bzip2 cpp cpp-5 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcomerr2 libcryptsetup4 libcurl3-gnutls libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgdbm3 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn11 libisl15 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 liblzma5 libmount1 libmpfr4 libncurses5 libncursesw5 libp11-kit0 libpcre3 libperl5.22 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.22 pkgbinarymangler policyrcd-script-zg2 procps sed systemd systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 133 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 141 MB of archives. After this operation, 404 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main s390x base-files s390x 9.6ubuntu2 [56.5 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main s390x debianutils s390x 4.8 [85.9 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main s390x bash s390x 4.3-15ubuntu1 [569 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main s390x bsdutils s390x 1:2.28-5ubuntu2 [54.5 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main s390x tar s390x 1.29b-1 [223 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main s390x dpkg s390x 1.18.9ubuntu2 [2153 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main s390x dash s390x 0.5.8-2.3ubuntu1 [100 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main s390x libc6-dev s390x 2.23-1ubuntu1 [1854 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main s390x libc-dev-bin s390x 2.23-1ubuntu1 [62.9 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x linux-libc-dev s390x 4.4.0-34.53 [825 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main s390x gcc-6-base s390x 6.1.1-11ubuntu12 [16.9 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main s390x libgcc1 s390x 1:6.1.1-11ubuntu12 [24.5 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main s390x libc6 s390x 2.23-1ubuntu1 [2303 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main s390x e2fslibs s390x 1.43.1-1 [153 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main s390x e2fsprogs s390x 1.43.1-1 [472 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main s390x findutils s390x 4.6.0+git+20160703-2 [278 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main s390x grep s390x 2.25-6 [148 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main s390x hostname s390x 3.18 [11.1 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main s390x login s390x 1:4.2-3.1ubuntu6 [303 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main s390x libsmartcols1 s390x 2.28-5ubuntu2 [61.7 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libaudit-common all 1:2.6.5-1ubuntu1 [4660 B] Get:22 http://ftpmaster.internal/ubuntu yakkety/main s390x libcap-ng0 s390x 0.7.7-3 [10.6 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libaudit1 s390x 1:2.6.5-1ubuntu1 [36.1 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libpcre3 s390x 2:8.39-1 [155 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main s390x libselinux1 s390x 2.5-3 [62.1 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main s390x libsepol1 s390x 2.5-1 [198 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main s390x libsemanage-common all 2.5-1 [6800 B] Get:28 http://ftpmaster.internal/ubuntu yakkety/main s390x libsemanage1 s390x 2.5-1 [75.1 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main s390x bzip2 s390x 1.0.6-8build1 [33.3 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main s390x libbz2-1.0 s390x 1.0.6-8build1 [32.7 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main s390x passwd s390x 1:4.2-3.1ubuntu6 [771 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main s390x libuuid1 s390x 2.28-5ubuntu2 [15.2 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main s390x libblkid1 s390x 2.28-5ubuntu2 [100 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main s390x libfdisk1 s390x 2.28-5ubuntu2 [128 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main s390x perl-modules-5.22 all 5.22.2-3 [2631 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main s390x libperl5.22 s390x 5.22.2-3 [3252 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main s390x perl s390x 5.22.2-3 [238 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main s390x perl-base s390x 5.22.2-3 [1246 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main s390x libdb5.3 s390x 5.3.28-12 [616 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main s390x libgdbm3 s390x 1.8.3-14 [16.9 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main s390x zlib1g s390x 1:1.2.8.dfsg-2ubuntu5 [51.6 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main s390x init-system-helpers all 1.42 [37.5 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main s390x util-linux s390x 2.28-5ubuntu2 [866 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main s390x sysvinit-utils s390x 2.88dsf-59.8git1 [18.6 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main s390x mount s390x 2.28-5ubuntu2 [121 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main s390x ncurses-bin s390x 6.0+20160625-1ubuntu1 [135 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main s390x sed s390x 4.2.2-7.1 [139 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main s390x init s390x 1.42 [5160 B] Get:49 http://ftpmaster.internal/ubuntu yakkety/main s390x libc-bin s390x 2.23-1ubuntu1 [545 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main s390x ncurses-base all 6.0+20160625-1ubuntu1 [16.6 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main s390x liblzma5 s390x 5.1.1alpha+20120614-2.1ubuntu1 [81.8 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main s390x libstdc++6 s390x 6.1.1-11ubuntu12 [403 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main s390x libapt-pkg5.0 s390x 1.3~pre3 [695 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main s390x ubuntu-keyring all 2016.05.13 [16.5 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main s390x apt s390x 1.3~pre3 [1007 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main s390x debconf all 1.5.59ubuntu1 [136 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main s390x libgpg-error0 s390x 1.24-1 [32.7 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main s390x libgcrypt20 s390x 1.7.2-2 [339 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libapparmor1 s390x 2.10.95-4ubuntu3 [32.0 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main s390x libcap2 s390x 1:2.25-1 [13.7 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main s390x libudev1 s390x 231-1 [56.5 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main s390x libdevmapper1.02.1 s390x 2:1.02.130-1ubuntu1 [147 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main s390x libcryptsetup4 s390x 2:1.7.2-0ubuntu1 [70.1 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main s390x libidn11 s390x 1.33-1 [44.4 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main s390x libkmod2 s390x 22-1.1ubuntu1 [36.8 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main s390x libmount1 s390x 2.28-5ubuntu2 [109 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main s390x libseccomp2 s390x 2.3.1-2ubuntu2 [38.5 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main s390x libcap2-bin s390x 1:2.25-1 [20.4 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main s390x libsystemd0 s390x 231-1 [195 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main s390x systemd s390x 231-1 [2180 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main s390x systemd-sysv s390x 231-1 [16.8 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main s390x libcomerr2 s390x 1.43.1-1 [10.0 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main s390x libdebconfclient0 s390x 0.213ubuntu1 [5988 B] Get:74 http://ftpmaster.internal/ubuntu yakkety/main s390x libncurses5 s390x 6.0+20160625-1ubuntu1 [89.7 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main s390x libtinfo5 s390x 6.0+20160625-1ubuntu1 [75.8 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main s390x libncursesw5 s390x 6.0+20160625-1ubuntu1 [107 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main s390x libss2 s390x 1.43.1-1 [10.8 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main s390x lsb-base all 9.20160110ubuntu5 [13.2 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main s390x multiarch-support s390x 2.23-1ubuntu1 [6820 B] Get:80 http://ftpmaster.internal/ubuntu yakkety/main s390x libusb-0.1-4 s390x 2:0.1.12-30 [16.6 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main s390x libprocps6 s390x 2:3.3.12-1ubuntu2 [30.3 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main s390x procps s390x 2:3.3.12-1ubuntu2 [218 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main s390x tzdata all 2016f-1 [169 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main s390x dmsetup s390x 2:1.02.130-1ubuntu1 [72.4 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main s390x libslang2 s390x 2.3.0-2.3ubuntu1 [405 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main s390x libsqlite3-0 s390x 3.13.0-1 [453 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main s390x libssl1.0.0 s390x 1.0.2g-1ubuntu7 [818 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main s390x xz-utils s390x 5.1.1alpha+20120614-2.1ubuntu1 [78.6 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main s390x libgmp10 s390x 2:6.1.1+dfsg-1 [228 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety/main s390x libp11-kit0 s390x 0.23.2-4 [97.5 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/main s390x libtasn1-6 s390x 4.8-1 [41.1 kB] Get:92 http://ftpmaster.internal/ubuntu yakkety/main s390x libgnutls30 s390x 3.4.14-1ubuntu1 [505 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main s390x libgssapi-krb5-2 s390x 1.14.2+dfsg-1ubuntu1 [110 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main s390x libkrb5-3 s390x 1.14.2+dfsg-1ubuntu1 [261 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main s390x libkrb5support0 s390x 1.14.2+dfsg-1ubuntu1 [30.9 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety/main s390x libk5crypto3 s390x 1.14.2+dfsg-1ubuntu1 [81.7 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main s390x libkeyutils1 s390x 1.5.9-9ubuntu1 [9450 B] Get:98 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libroken18-heimdal s390x 1.7~git20160703+dfsg-1 [39.3 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libasn1-8-heimdal s390x 1.7~git20160703+dfsg-1 [147 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libheimbase1-heimdal s390x 1.7~git20160703+dfsg-1 [27.5 kB] Get:101 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libhcrypto4-heimdal s390x 1.7~git20160703+dfsg-1 [84.4 kB] Get:102 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libwind0-heimdal s390x 1.7~git20160703+dfsg-1 [48.2 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libhx509-5-heimdal s390x 1.7~git20160703+dfsg-1 [100.0 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libkrb5-26-heimdal s390x 1.7~git20160703+dfsg-1 [188 kB] Get:105 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libheimntlm0-heimdal s390x 1.7~git20160703+dfsg-1 [14.7 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libgssapi3-heimdal s390x 1.7~git20160703+dfsg-1 [89.0 kB] Get:107 http://ftpmaster.internal/ubuntu yakkety/main s390x libsasl2-modules-db s390x 2.1.26.dfsg1-15 [14.0 kB] Get:108 http://ftpmaster.internal/ubuntu yakkety/main s390x libsasl2-2 s390x 2.1.26.dfsg1-15 [46.8 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety/main s390x libldap-2.4-2 s390x 2.4.42+dfsg-2ubuntu4 [151 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-1 [51.8 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety/main s390x libcurl3-gnutls s390x 7.50.1-1ubuntu1 [175 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety/main s390x apt-transport-https s390x 1.3~pre3 [25.7 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/main s390x libpng16-16 s390x 1.6.23-1 [171 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main s390x openssl s390x 1.0.2g-1ubuntu7 [477 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main s390x binutils s390x 2.26.1-1ubuntu2 [1055 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/main s390x libisl15 s390x 0.17.1-1 [505 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main s390x libmpfr4 s390x 3.1.4-2 [188 kB] Get:118 http://ftpmaster.internal/ubuntu yakkety/main s390x cpp-6 s390x 6.1.1-11ubuntu12 [26.9 MB] Get:119 http://ftpmaster.internal/ubuntu yakkety/main s390x cpp s390x 4:6.1.1-1ubuntu2 [27.4 kB] Get:120 http://ftpmaster.internal/ubuntu yakkety/main s390x libgomp1 s390x 6.1.1-11ubuntu12 [71.0 kB] Get:121 http://ftpmaster.internal/ubuntu yakkety/main s390x libitm1 s390x 6.1.1-11ubuntu12 [27.2 kB] Get:122 http://ftpmaster.internal/ubuntu yakkety/main s390x libatomic1 s390x 6.1.1-11ubuntu12 [8158 B] Get:123 http://ftpmaster.internal/ubuntu yakkety/main s390x g++-5 s390x 5.4.1-1ubuntu2 [6751 kB] Get:124 http://ftpmaster.internal/ubuntu yakkety/main s390x gcc-5 s390x 5.4.1-1ubuntu2 [6903 kB] Get:125 http://ftpmaster.internal/ubuntu yakkety/main s390x libstdc++-5-dev s390x 5.4.1-1ubuntu2 [1375 kB] Get:126 http://ftpmaster.internal/ubuntu yakkety/main s390x libgcc-5-dev s390x 5.4.1-1ubuntu2 [245 kB] Get:127 http://ftpmaster.internal/ubuntu yakkety/main s390x libcc1-0 s390x 6.1.1-11ubuntu12 [31.0 kB] Get:128 http://ftpmaster.internal/ubuntu yakkety/main s390x cpp-5 s390x 5.4.1-1ubuntu2 [6154 kB] Get:129 http://ftpmaster.internal/ubuntu yakkety/main s390x gcc-5-base s390x 5.4.1-1ubuntu2 [17.2 kB] Get:130 http://ftpmaster.internal/ubuntu yakkety/main s390x dpkg-dev all 1.18.9ubuntu2 [641 kB] Get:131 http://ftpmaster.internal/ubuntu yakkety/main s390x libdpkg-perl all 1.18.9ubuntu2 [203 kB] Get:132 http://ftpmaster.internal/ubuntu yakkety/main s390x make s390x 4.1-9 [149 kB] Get:133 http://ftpmaster.internal/ubuntu yakkety/main s390x libgcc-6-dev s390x 6.1.1-11ubuntu12 [267 kB] Get:134 http://ftpmaster.internal/ubuntu yakkety/main s390x gcc-6 s390x 6.1.1-11ubuntu12 [26.6 MB] Get:135 http://ftpmaster.internal/ubuntu yakkety/main s390x gcc s390x 4:6.1.1-1ubuntu2 [5166 B] Get:136 http://ftpmaster.internal/ubuntu yakkety/main s390x libstdc++-6-dev s390x 6.1.1-11ubuntu12 [1407 kB] Get:137 http://ftpmaster.internal/ubuntu yakkety/main s390x g++-6 s390x 6.1.1-11ubuntu12 [28.9 MB] Get:138 http://ftpmaster.internal/ubuntu yakkety/main s390x g++ s390x 4:6.1.1-1ubuntu2 [1478 B] Get:139 http://ftpmaster.internal/ubuntu yakkety/main s390x optipng s390x 0.7.6-1build1 [81.5 kB] Get:140 http://ftpmaster.internal/ubuntu yakkety/main s390x pkgbinarymangler all 130 [43.2 kB] Get:141 http://ftpmaster.internal/ubuntu yakkety/main s390x policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 141 MB in 3min 55s (600 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11908 files and directories currently installed.) Preparing to unpack .../base-files_9.6ubuntu2_s390x.deb ... Unpacking base-files (9.6ubuntu2) over (9.6ubuntu1) ... Setting up base-files (9.6ubuntu2) ... Installing new version of config file /etc/update-motd.d/10-help-text ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11908 files and directories currently installed.) Preparing to unpack .../debianutils_4.8_s390x.deb ... Unpacking debianutils (4.8) over (4.7) ... Setting up debianutils (4.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11908 files and directories currently installed.) Preparing to unpack .../bash_4.3-15ubuntu1_s390x.deb ... Unpacking bash (4.3-15ubuntu1) over (4.3-14ubuntu1) ... Setting up bash (4.3-15ubuntu1) ... Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11908 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.28-5ubuntu2_s390x.deb ... Unpacking bsdutils (1:2.28-5ubuntu2) over (1:2.27.1-6ubuntu3) ... Setting up bsdutils (1:2.28-5ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11908 files and directories currently installed.) Preparing to unpack .../archives/tar_1.29b-1_s390x.deb ... Unpacking tar (1.29b-1) over (1.28-2.1) ... Setting up tar (1.29b-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11908 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.9ubuntu2_s390x.deb ... Unpacking dpkg (1.18.9ubuntu2) over (1.18.4ubuntu1) ... Setting up dpkg (1.18.9ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../dash_0.5.8-2.3ubuntu1_s390x.deb ... Unpacking dash (0.5.8-2.3ubuntu1) over (0.5.8-2.1ubuntu2) ... Setting up dash (0.5.8-2.3ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.23-1ubuntu1_s390x.deb ... Unpacking libc6-dev:s390x (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.23-1ubuntu1_s390x.deb ... Unpacking libc-dev-bin (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Preparing to unpack .../linux-libc-dev_4.4.0-34.53_s390x.deb ... Unpacking linux-libc-dev:s390x (4.4.0-34.53) over (4.4.0-21.37) ... Preparing to unpack .../gcc-6-base_6.1.1-11ubuntu12_s390x.deb ... Unpacking gcc-6-base:s390x (6.1.1-11ubuntu12) over (6.0.1-0ubuntu1) ... Setting up gcc-6-base:s390x (6.1.1-11ubuntu12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a6.1.1-11ubuntu12_s390x.deb ... Unpacking libgcc1:s390x (1:6.1.1-11ubuntu12) over (1:6.0.1-0ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgcc1:s390x (1:6.1.1-11ubuntu12) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../libc6_2.23-1ubuntu1_s390x.deb ... Unpacking libc6:s390x (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Setting up libc6:s390x (2.23-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.1-1_s390x.deb ... Unpacking e2fslibs:s390x (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up e2fslibs:s390x (1.43.1-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.1-1_s390x.deb ... Unpacking e2fsprogs (1.43.1-1) over (1.42.13-1ubuntu1) ... Setting up e2fsprogs (1.43.1-1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11904 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20160703-2_s390x.deb ... Unpacking findutils (4.6.0+git+20160703-2) over (4.6.0+git+20160126-2) ... Setting up findutils (4.6.0+git+20160703-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11904 files and directories currently installed.) Preparing to unpack .../archives/grep_2.25-6_s390x.deb ... Unpacking grep (2.25-6) over (2.24-1) ... Setting up grep (2.25-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11904 files and directories currently installed.) Preparing to unpack .../hostname_3.18_s390x.deb ... Unpacking hostname (3.18) over (3.16ubuntu2) ... Setting up hostname (3.18) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11904 files and directories currently installed.) Preparing to unpack .../login_1%3a4.2-3.1ubuntu6_s390x.deb ... Unpacking login (1:4.2-3.1ubuntu6) over (1:4.2-3.1ubuntu5) ... Setting up login (1:4.2-3.1ubuntu6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11904 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.28-5ubuntu2_s390x.deb ... Unpacking libsmartcols1:s390x (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsmartcols1:s390x (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11904 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.6.5-1ubuntu1_all.deb ... Unpacking libaudit-common (1:2.6.5-1ubuntu1) over (1:2.4.5-1ubuntu2) ... Setting up libaudit-common (1:2.6.5-1ubuntu1) ... Selecting previously unselected package libcap-ng0:s390x. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11904 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.7-3_s390x.deb ... Unpacking libcap-ng0:s390x (0.7.7-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libcap-ng0:s390x (0.7.7-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.6.5-1ubuntu1_s390x.deb ... Unpacking libaudit1:s390x (1:2.6.5-1ubuntu1) over (1:2.4.5-1ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libaudit1:s390x (1:2.6.5-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-1_s390x.deb ... Unpacking libpcre3:s390x (2:8.39-1) over (2:8.38-3.1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libpcre3:s390x (2:8.39-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libselinux1_2.5-3_s390x.deb ... Unpacking libselinux1:s390x (2.5-3) over (2.4-3build2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libselinux1:s390x (2.5-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libsepol1_2.5-1_s390x.deb ... Unpacking libsepol1:s390x (2.5-1) over (2.4-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsepol1:s390x (2.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.5-1_all.deb ... Unpacking libsemanage-common (2.5-1) over (2.3-1build3) ... Setting up libsemanage-common (2.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.5-1_s390x.deb ... Unpacking libsemanage1:s390x (2.5-1) over (2.3-1build3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsemanage1:s390x (2.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.6-8build1_s390x.deb ... Unpacking bzip2 (1.0.6-8build1) over (1.0.6-8) ... Preparing to unpack .../libbz2-1.0_1.0.6-8build1_s390x.deb ... Unpacking libbz2-1.0:s390x (1.0.6-8build1) over (1.0.6-8) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libbz2-1.0:s390x (1.0.6-8build1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.1ubuntu6_s390x.deb ... Unpacking passwd (1:4.2-3.1ubuntu6) over (1:4.2-3.1ubuntu5) ... Setting up passwd (1:4.2-3.1ubuntu6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libuuid1_2.28-5ubuntu2_s390x.deb ... Unpacking libuuid1:s390x (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libuuid1:s390x (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libblkid1_2.28-5ubuntu2_s390x.deb ... Unpacking libblkid1:s390x (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libblkid1:s390x (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.28-5ubuntu2_s390x.deb ... Unpacking libfdisk1:s390x (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libfdisk1:s390x (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../perl_5.22.2-3_s390x.deb ... Unpacking perl (5.22.2-3) over (5.22.1-9) ... Preparing to unpack .../perl-modules-5.22_5.22.2-3_all.deb ... Unpacking perl-modules-5.22 (5.22.2-3) over (5.22.1-9) ... Preparing to unpack .../libperl5.22_5.22.2-3_s390x.deb ... Unpacking libperl5.22:s390x (5.22.2-3) over (5.22.1-9) ... Preparing to unpack .../perl-base_5.22.2-3_s390x.deb ... Unpacking perl-base (5.22.2-3) over (5.22.1-9) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up perl-base (5.22.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11910 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-12_s390x.deb ... Unpacking libdb5.3:s390x (5.3.28-12) over (5.3.28-11) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libdb5.3:s390x (5.3.28-12) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11910 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-14_s390x.deb ... Unpacking libgdbm3:s390x (1.8.3-14) over (1.8.3-13.1) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu5_s390x.deb ... Unpacking zlib1g:s390x (1:1.2.8.dfsg-2ubuntu5) over (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up zlib1g:s390x (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11910 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.42_all.deb ... Unpacking init-system-helpers (1.42) over (1.29ubuntu1) ... Setting up init-system-helpers (1.42) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11914 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.8git1_s390x.deb ... Unpacking sysvinit-utils (2.88dsf-59.8git1) over (2.88dsf-59.3ubuntu2) ... Replacing files in old package initscripts (2.88dsf-59.3ubuntu2) ... Preparing to unpack .../util-linux_2.28-5ubuntu2_s390x.deb ... Unpacking util-linux (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Setting up util-linux (2.28-5ubuntu2) ... Processing triggers for systemd (229-4ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../mount_2.28-5ubuntu2_s390x.deb ... Unpacking mount (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Setting up mount (2.28-5ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11920 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20160625-1ubuntu1_s390x.deb ... Unpacking ncurses-bin (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-bin (6.0+20160625-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../sed_4.2.2-7.1_s390x.deb ... Unpacking sed (4.2.2-7.1) over (4.2.2-7) ... Setting up sed (4.2.2-7.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../archives/init_1.42_s390x.deb ... Unpacking init (1.42) over (1.29ubuntu1) ... Setting up init (1.42) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../libc-bin_2.23-1ubuntu1_s390x.deb ... Unpacking libc-bin (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Setting up libc-bin (2.23-1ubuntu1) ... Updating /etc/nsswitch.conf to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.0+20160625-1ubuntu1_all.deb ... Unpacking ncurses-base (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-base (6.0+20160625-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../liblzma5_5.1.1alpha+20120614-2.1ubuntu1_s390x.deb ... Unpacking liblzma5:s390x (5.1.1alpha+20120614-2.1ubuntu1) over (5.1.1alpha+20120614-2ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up liblzma5:s390x (5.1.1alpha+20120614-2.1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.1.1-11ubuntu12_s390x.deb ... Unpacking libstdc++6:s390x (6.1.1-11ubuntu12) over (5.3.1-14ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libstdc++6:s390x (6.1.1-11ubuntu12) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.3~pre3_s390x.deb ... Unpacking libapt-pkg5.0:s390x (1.3~pre3) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libapt-pkg5.0:s390x (1.3~pre3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.05.13_all.deb ... Unpacking ubuntu-keyring (2016.05.13) over (2012.05.19) ... Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../apt_1.3~pre3_s390x.deb ... Unpacking apt (1.3~pre3) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up apt (1.3~pre3) ... Installing new version of config file /etc/cron.daily/apt-compat ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11916 files and directories currently installed.) Preparing to unpack .../debconf_1.5.59ubuntu1_all.deb ... Unpacking debconf (1.5.59ubuntu1) over (1.5.58ubuntu1) ... Setting up debconf (1.5.59ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11916 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.24-1_s390x.deb ... Unpacking libgpg-error0:s390x (1.24-1) over (1.21-2ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libgpg-error0:s390x (1.24-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11916 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.2-2_s390x.deb ... Unpacking libgcrypt20:s390x (1.7.2-2) over (1.6.5-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libgcrypt20:s390x (1.7.2-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11916 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.10.95-4ubuntu3_s390x.deb ... Unpacking libapparmor1:s390x (2.10.95-4ubuntu3) over (2.10.95-0ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libapparmor1:s390x (2.10.95-4ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1_s390x.deb ... Unpacking libcap2:s390x (1:2.25-1) over (1:2.24-12) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcap2:s390x (1:2.25-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libudev1_231-1_s390x.deb ... Unpacking libudev1:s390x (231-1) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libudev1:s390x (231-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.130-1ubuntu1_s390x.deb ... Unpacking libdevmapper1.02.1:s390x (2:1.02.130-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libdevmapper1.02.1:s390x (2:1.02.130-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.2-0ubuntu1_s390x.deb ... Unpacking libcryptsetup4:s390x (2:1.7.2-0ubuntu1) over (2:1.6.6-5ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcryptsetup4:s390x (2:1.7.2-0ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libidn11_1.33-1_s390x.deb ... Unpacking libidn11:s390x (1.33-1) over (1.32-3ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libidn11:s390x (1.33-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libkmod2_22-1.1ubuntu1_s390x.deb ... Unpacking libkmod2:s390x (22-1.1ubuntu1) over (22-1ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libkmod2:s390x (22-1.1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libmount1_2.28-5ubuntu2_s390x.deb ... Unpacking libmount1:s390x (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libmount1:s390x (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2ubuntu2_s390x.deb ... Unpacking libseccomp2:s390x (2.3.1-2ubuntu2) over (2.2.3-3ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libseccomp2:s390x (2.3.1-2ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.25-1_s390x.deb ... Unpacking libcap2-bin (1:2.25-1) over (1:2.24-12) ... Setting up libcap2-bin (1:2.25-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../libsystemd0_231-1_s390x.deb ... Unpacking libsystemd0:s390x (231-1) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libsystemd0:s390x (231-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../systemd_231-1_s390x.deb ... Unpacking systemd (231-1) over (229-4ubuntu4) ... Setting up systemd (231-1) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/systemd/bootchart.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11920 files and directories currently installed.) Preparing to unpack .../systemd-sysv_231-1_s390x.deb ... Unpacking systemd-sysv (231-1) over (229-4ubuntu4) ... Setting up systemd-sysv (231-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11920 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.1-1_s390x.deb ... Unpacking libcomerr2:s390x (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcomerr2:s390x (1.43.1-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11920 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.213ubuntu1_s390x.deb ... Unpacking libdebconfclient0:s390x (0.213ubuntu1) over (0.198ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libdebconfclient0:s390x (0.213ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11920 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20160625-1ubuntu1_s390x.deb ... Unpacking libncurses5:s390x (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.0+20160625-1ubuntu1_s390x.deb ... Unpacking libtinfo5:s390x (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libtinfo5:s390x (6.0+20160625-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11921 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20160625-1ubuntu1_s390x.deb ... Unpacking libncursesw5:s390x (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libncursesw5:s390x (6.0+20160625-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11921 files and directories currently installed.) Preparing to unpack .../libss2_1.43.1-1_s390x.deb ... Unpacking libss2:s390x (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libss2:s390x (1.43.1-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11921 files and directories currently installed.) Preparing to unpack .../lsb-base_9.20160110ubuntu5_all.deb ... Unpacking lsb-base (9.20160110ubuntu5) over (9.20160110) ... Setting up lsb-base (9.20160110ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11921 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.23-1ubuntu1_s390x.deb ... Unpacking multiarch-support (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Setting up multiarch-support (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11921 files and directories currently installed.) Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-30_s390x.deb ... Unpacking libusb-0.1-4:s390x (2:0.1.12-30) over (2:0.1.12-28) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libusb-0.1-4:s390x (2:0.1.12-30) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Selecting previously unselected package libprocps6:s390x. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11921 files and directories currently installed.) Preparing to unpack .../libprocps6_2%3a3.3.12-1ubuntu2_s390x.deb ... Unpacking libprocps6:s390x (2:3.3.12-1ubuntu2) ... Preparing to unpack .../procps_2%3a3.3.12-1ubuntu2_s390x.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.12-1ubuntu2) over (2:3.3.10-4ubuntu2) ... Preparing to unpack .../tzdata_2016f-1_all.deb ... Unpacking tzdata (2016f-1) over (2016d-0ubuntu0.16.04) ... Preparing to unpack .../dmsetup_2%3a1.02.130-1ubuntu1_s390x.deb ... Unpacking dmsetup (2:1.02.130-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Preparing to unpack .../libslang2_2.3.0-2.3ubuntu1_s390x.deb ... Unpacking libslang2:s390x (2.3.0-2.3ubuntu1) over (2.3.0-2ubuntu1) ... Preparing to unpack .../libsqlite3-0_3.13.0-1_s390x.deb ... Unpacking libsqlite3-0:s390x (3.13.0-1) over (3.11.0-1ubuntu1) ... Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu7_s390x.deb ... Unpacking libssl1.0.0:s390x (1.0.2g-1ubuntu7) over (1.0.2g-1ubuntu4) ... Preparing to unpack .../xz-utils_5.1.1alpha+20120614-2.1ubuntu1_s390x.deb ... Unpacking xz-utils (5.1.1alpha+20120614-2.1ubuntu1) over (5.1.1alpha+20120614-2ubuntu2) ... Preparing to unpack .../libgmp10_2%3a6.1.1+dfsg-1_s390x.deb ... Unpacking libgmp10:s390x (2:6.1.1+dfsg-1) over (2:6.1.0+dfsg-2) ... Preparing to unpack .../libp11-kit0_0.23.2-4_s390x.deb ... Unpacking libp11-kit0:s390x (0.23.2-4) over (0.23.2-3) ... Preparing to unpack .../libtasn1-6_4.8-1_s390x.deb ... Unpacking libtasn1-6:s390x (4.8-1) over (4.7-3) ... Preparing to unpack .../libgnutls30_3.4.14-1ubuntu1_s390x.deb ... Unpacking libgnutls30:s390x (3.4.14-1ubuntu1) over (3.4.10-4ubuntu1) ... Preparing to unpack .../libgssapi-krb5-2_1.14.2+dfsg-1ubuntu1_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkrb5-3_1.14.2+dfsg-1ubuntu1_s390x.deb ... Unpacking libkrb5-3:s390x (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkrb5support0_1.14.2+dfsg-1ubuntu1_s390x.deb ... Unpacking libkrb5support0:s390x (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libk5crypto3_1.14.2+dfsg-1ubuntu1_s390x.deb ... Unpacking libk5crypto3:s390x (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkeyutils1_1.5.9-9ubuntu1_s390x.deb ... Unpacking libkeyutils1:s390x (1.5.9-9ubuntu1) over (1.5.9-8ubuntu1) ... Preparing to unpack .../libroken18-heimdal_1.7~git20160703+dfsg-1_s390x.deb ... Unpacking libroken18-heimdal:s390x (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libasn1-8-heimdal_1.7~git20160703+dfsg-1_s390x.deb ... Unpacking libasn1-8-heimdal:s390x (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libheimbase1-heimdal_1.7~git20160703+dfsg-1_s390x.deb ... Unpacking libheimbase1-heimdal:s390x (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libhcrypto4-heimdal_1.7~git20160703+dfsg-1_s390x.deb ... Unpacking libhcrypto4-heimdal:s390x (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libwind0-heimdal_1.7~git20160703+dfsg-1_s390x.deb ... Unpacking libwind0-heimdal:s390x (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libhx509-5-heimdal_1.7~git20160703+dfsg-1_s390x.deb ... Unpacking libhx509-5-heimdal:s390x (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libkrb5-26-heimdal_1.7~git20160703+dfsg-1_s390x.deb ... Unpacking libkrb5-26-heimdal:s390x (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libheimntlm0-heimdal_1.7~git20160703+dfsg-1_s390x.deb ... Unpacking libheimntlm0-heimdal:s390x (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libgssapi3-heimdal_1.7~git20160703+dfsg-1_s390x.deb ... Unpacking libgssapi3-heimdal:s390x (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-15_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-15_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2ubuntu4_s390x.deb ... Unpacking libldap-2.4-2:s390x (2.4.42+dfsg-2ubuntu4) over (2.4.42+dfsg-2ubuntu3) ... Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-1_s390x.deb ... Unpacking librtmp1:s390x (2.4+20151223.gitfa8646d.1-1) over (2.4+20151223.gitfa8646d-1build1) ... Preparing to unpack .../libcurl3-gnutls_7.50.1-1ubuntu1_s390x.deb ... Unpacking libcurl3-gnutls:s390x (7.50.1-1ubuntu1) over (7.47.0-1ubuntu2) ... Preparing to unpack .../apt-transport-https_1.3~pre3_s390x.deb ... Unpacking apt-transport-https (1.3~pre3) over (1.2.10ubuntu1) ... Selecting previously unselected package libpng16-16:s390x. Preparing to unpack .../libpng16-16_1.6.23-1_s390x.deb ... Unpacking libpng16-16:s390x (1.6.23-1) ... Preparing to unpack .../openssl_1.0.2g-1ubuntu7_s390x.deb ... Unpacking openssl (1.0.2g-1ubuntu7) over (1.0.2g-1ubuntu4) ... Preparing to unpack .../binutils_2.26.1-1ubuntu2_s390x.deb ... Unpacking binutils (2.26.1-1ubuntu2) over (2.26-8ubuntu2) ... Preparing to unpack .../libisl15_0.17.1-1_s390x.deb ... Unpacking libisl15:s390x (0.17.1-1) over (0.16.1-1) ... Preparing to unpack .../libmpfr4_3.1.4-2_s390x.deb ... Unpacking libmpfr4:s390x (3.1.4-2) over (3.1.4-1) ... Selecting previously unselected package cpp-6. Preparing to unpack .../cpp-6_6.1.1-11ubuntu12_s390x.deb ... Unpacking cpp-6 (6.1.1-11ubuntu12) ... Preparing to unpack .../cpp_4%3a6.1.1-1ubuntu2_s390x.deb ... Unpacking cpp (4:6.1.1-1ubuntu2) over (4:5.3.1-1ubuntu1) ... Preparing to unpack .../libgomp1_6.1.1-11ubuntu12_s390x.deb ... Unpacking libgomp1:s390x (6.1.1-11ubuntu12) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libitm1_6.1.1-11ubuntu12_s390x.deb ... Unpacking libitm1:s390x (6.1.1-11ubuntu12) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libatomic1_6.1.1-11ubuntu12_s390x.deb ... Unpacking libatomic1:s390x (6.1.1-11ubuntu12) over (5.3.1-14ubuntu2) ... Preparing to unpack .../g++-5_5.4.1-1ubuntu2_s390x.deb ... Unpacking g++-5 (5.4.1-1ubuntu2) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5_5.4.1-1ubuntu2_s390x.deb ... Unpacking gcc-5 (5.4.1-1ubuntu2) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libstdc++-5-dev_5.4.1-1ubuntu2_s390x.deb ... Unpacking libstdc++-5-dev:s390x (5.4.1-1ubuntu2) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libgcc-5-dev_5.4.1-1ubuntu2_s390x.deb ... Unpacking libgcc-5-dev:s390x (5.4.1-1ubuntu2) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libcc1-0_6.1.1-11ubuntu12_s390x.deb ... Unpacking libcc1-0:s390x (6.1.1-11ubuntu12) over (5.3.1-14ubuntu2) ... Preparing to unpack .../cpp-5_5.4.1-1ubuntu2_s390x.deb ... Unpacking cpp-5 (5.4.1-1ubuntu2) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5-base_5.4.1-1ubuntu2_s390x.deb ... Unpacking gcc-5-base:s390x (5.4.1-1ubuntu2) over (5.3.1-14ubuntu2) ... Preparing to unpack .../dpkg-dev_1.18.9ubuntu2_all.deb ... Unpacking dpkg-dev (1.18.9ubuntu2) over (1.18.4ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.18.9ubuntu2_all.deb ... Unpacking libdpkg-perl (1.18.9ubuntu2) over (1.18.4ubuntu1) ... Preparing to unpack .../archives/make_4.1-9_s390x.deb ... Unpacking make (4.1-9) over (4.1-6) ... Selecting previously unselected package libgcc-6-dev:s390x. Preparing to unpack .../libgcc-6-dev_6.1.1-11ubuntu12_s390x.deb ... Unpacking libgcc-6-dev:s390x (6.1.1-11ubuntu12) ... Selecting previously unselected package gcc-6. Preparing to unpack .../gcc-6_6.1.1-11ubuntu12_s390x.deb ... Unpacking gcc-6 (6.1.1-11ubuntu12) ... Preparing to unpack .../gcc_4%3a6.1.1-1ubuntu2_s390x.deb ... Removing old gcc doc directory. Unpacking gcc (4:6.1.1-1ubuntu2) over (4:5.3.1-1ubuntu1) ... Selecting previously unselected package libstdc++-6-dev:s390x. Preparing to unpack .../libstdc++-6-dev_6.1.1-11ubuntu12_s390x.deb ... Unpacking libstdc++-6-dev:s390x (6.1.1-11ubuntu12) ... Selecting previously unselected package g++-6. Preparing to unpack .../g++-6_6.1.1-11ubuntu12_s390x.deb ... Unpacking g++-6 (6.1.1-11ubuntu12) ... Preparing to unpack .../g++_4%3a6.1.1-1ubuntu2_s390x.deb ... Unpacking g++ (4:6.1.1-1ubuntu2) over (4:5.3.1-1ubuntu1) ... Preparing to unpack .../optipng_0.7.6-1build1_s390x.deb ... Unpacking optipng (0.7.6-1build1) over (0.7.6-1) ... Preparing to unpack .../pkgbinarymangler_130_all.deb ... Unpacking pkgbinarymangler (130) over (129) ... Preparing to unpack .../policyrcd-script-zg2_0.1-3_all.deb ... Unpacking policyrcd-script-zg2 (0.1-3) over (0.1-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Processing triggers for systemd (231-1) ... Setting up libc-dev-bin (2.23-1ubuntu1) ... Setting up linux-libc-dev:s390x (4.4.0-34.53) ... Setting up libc6-dev:s390x (2.23-1ubuntu1) ... Setting up bzip2 (1.0.6-8build1) ... Setting up perl-modules-5.22 (5.22.2-3) ... Setting up libgdbm3:s390x (1.8.3-14) ... Setting up libperl5.22:s390x (5.22.2-3) ... Setting up perl (5.22.2-3) ... Setting up sysvinit-utils (2.88dsf-59.8git1) ... Setting up libncurses5:s390x (6.0+20160625-1ubuntu1) ... Setting up libprocps6:s390x (2:3.3.12-1ubuntu2) ... Setting up procps (2:3.3.12-1ubuntu2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Setting up tzdata (2016f-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Aug 6 17:23:21 UTC 2016. Universal Time is now: Sat Aug 6 17:23:21 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up dmsetup (2:1.02.130-1ubuntu1) ... Setting up libslang2:s390x (2.3.0-2.3ubuntu1) ... Setting up libsqlite3-0:s390x (3.13.0-1) ... Setting up libssl1.0.0:s390x (1.0.2g-1ubuntu7) ... Setting up xz-utils (5.1.1alpha+20120614-2.1ubuntu1) ... Setting up libgmp10:s390x (2:6.1.1+dfsg-1) ... Setting up libp11-kit0:s390x (0.23.2-4) ... Setting up libtasn1-6:s390x (4.8-1) ... Setting up libgnutls30:s390x (3.4.14-1ubuntu1) ... Setting up libkrb5support0:s390x (1.14.2+dfsg-1ubuntu1) ... Setting up libk5crypto3:s390x (1.14.2+dfsg-1ubuntu1) ... Setting up libkeyutils1:s390x (1.5.9-9ubuntu1) ... Setting up libkrb5-3:s390x (1.14.2+dfsg-1ubuntu1) ... Setting up libgssapi-krb5-2:s390x (1.14.2+dfsg-1ubuntu1) ... Setting up libroken18-heimdal:s390x (1.7~git20160703+dfsg-1) ... Setting up libasn1-8-heimdal:s390x (1.7~git20160703+dfsg-1) ... Setting up libheimbase1-heimdal:s390x (1.7~git20160703+dfsg-1) ... Setting up libhcrypto4-heimdal:s390x (1.7~git20160703+dfsg-1) ... Setting up libwind0-heimdal:s390x (1.7~git20160703+dfsg-1) ... Setting up libhx509-5-heimdal:s390x (1.7~git20160703+dfsg-1) ... Setting up libkrb5-26-heimdal:s390x (1.7~git20160703+dfsg-1) ... Setting up libheimntlm0-heimdal:s390x (1.7~git20160703+dfsg-1) ... Setting up libgssapi3-heimdal:s390x (1.7~git20160703+dfsg-1) ... Setting up libsasl2-modules-db:s390x (2.1.26.dfsg1-15) ... Setting up libsasl2-2:s390x (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:s390x (2.4.42+dfsg-2ubuntu4) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-1) ... Setting up libcurl3-gnutls:s390x (7.50.1-1ubuntu1) ... Setting up apt-transport-https (1.3~pre3) ... Setting up libpng16-16:s390x (1.6.23-1) ... Setting up openssl (1.0.2g-1ubuntu7) ... Setting up binutils (2.26.1-1ubuntu2) ... Setting up libisl15:s390x (0.17.1-1) ... Setting up libmpfr4:s390x (3.1.4-2) ... Setting up cpp-6 (6.1.1-11ubuntu12) ... Setting up cpp (4:6.1.1-1ubuntu2) ... Setting up libgomp1:s390x (6.1.1-11ubuntu12) ... Setting up libitm1:s390x (6.1.1-11ubuntu12) ... Setting up libatomic1:s390x (6.1.1-11ubuntu12) ... Setting up gcc-5-base:s390x (5.4.1-1ubuntu2) ... Setting up cpp-5 (5.4.1-1ubuntu2) ... Setting up libcc1-0:s390x (6.1.1-11ubuntu12) ... Setting up libgcc-5-dev:s390x (5.4.1-1ubuntu2) ... Setting up gcc-5 (5.4.1-1ubuntu2) ... Setting up libstdc++-5-dev:s390x (5.4.1-1ubuntu2) ... Setting up g++-5 (5.4.1-1ubuntu2) ... Setting up libdpkg-perl (1.18.9ubuntu2) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.9ubuntu2) ... Setting up libgcc-6-dev:s390x (6.1.1-11ubuntu12) ... Setting up gcc-6 (6.1.1-11ubuntu12) ... Setting up gcc (4:6.1.1-1ubuntu2) ... Setting up libstdc++-6-dev:s390x (6.1.1-11ubuntu12) ... Setting up g++-6 (6.1.1-11ubuntu12) ... Setting up g++ (4:6.1.1-1ubuntu2) ... Setting up optipng (0.7.6-1build1) ... Setting up pkgbinarymangler (130) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Processing triggers for systemd (231-1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-10573704', 's390x', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=s390x', '--dist=yakkety-proposed', '--purge=never', '--nolog', 'ncbi-blast+_2.4.0-3.dsc'] Initiating build PACKAGEBUILD-10573704 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-31-generic #50-Ubuntu SMP Wed Jul 13 00:19:48 UTC 2016 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on z13-013.buildd +==============================================================================+ | ncbi-blast+ 2.4.0-3 (s390x) 06 Aug 2016 17:23 | +==============================================================================+ Package: ncbi-blast+ Version: 2.4.0-3 Source Version: 2.4.0-3 Distribution: yakkety-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-aEy0mk' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-10573704/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ncbi-blast+_2.4.0-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-aEy0mk/resolver-1TT9hZ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-aEy0mk/resolver-1TT9hZ/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-aEy0mk/resolver-1TT9hZ/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-aEy0mk/resolver-1TT9hZ/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-aEy0mk/resolver-1TT9hZ/apt_archive ./ Sources [214 B] Get:5 copy:/build/ncbi-blast+-aEy0mk/resolver-1TT9hZ/apt_archive ./ Packages [529 B] Fetched 2862 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libpng12-0 libprocps4 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 772 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-aEy0mk/resolver-1TT9hZ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 772 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12878 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-aEy0mk/resolver-llkGNp/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-aEy0mk/resolver-llkGNp/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-aEy0mk/resolver-llkGNp/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-aEy0mk/resolver-llkGNp/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-aEy0mk/resolver-llkGNp/apt_archive ./ Sources [258 B] Get:5 copy:/build/ncbi-blast+-aEy0mk/resolver-llkGNp/apt_archive ./ Packages [577 B] Fetched 2954 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ncbi-blast+ build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libpng12-0 libprocps4 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libboost-test-dev libboost-test1.61-dev libboost-test1.61.0 libboost1.61-dev libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf time zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libboost1.61-doc libboost-atomic1.61-dev libboost-chrono1.61-dev libboost-date-time1.61-dev libboost-exception1.61-dev libboost-filesystem1.61-dev libboost-graph1.61-dev libboost-graph-parallel1.61-dev libboost-iostreams1.61-dev libboost-locale1.61-dev libboost-log1.61-dev libboost-math1.61-dev libboost-mpi1.61-dev libboost-mpi-python1.61-dev libboost-program-options1.61-dev libboost-python1.61-dev libboost-random1.61-dev libboost-regex1.61-dev libboost-serialization1.61-dev libboost-signals1.61-dev libboost-system1.61-dev libboost-thread1.61-dev libboost-timer1.61-dev libboost-wave1.61-dev libboost1.61-tools-dev libmpfrc++-dev libntl-dev libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libboost-test-dev libboost-test1.61-dev libboost-test1.61.0 libboost1.61-dev libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 23.9 MB of archives. After this operation, 186 MB of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-aEy0mk/resolver-llkGNp/apt_archive ./ sbuild-build-depends-ncbi-blast+-dummy 0.invalid.0 [828 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main s390x groff-base s390x 1.22.3-8 [1175 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main s390x bsdmainutils s390x 9.0.6ubuntu3 [179 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main s390x libpipeline1 s390x 1.4.1-2 [24.8 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main s390x man-db s390x 2.7.5-1 [850 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libpcrecpp0v5 s390x 2:8.39-1 [14.6 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main s390x libmagic1 s390x 1:5.28-2ubuntu1 [233 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main s390x file s390x 1:5.28-2ubuntu1 [21.9 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main s390x libasprintf0v5 s390x 0.19.7-2ubuntu3 [6344 B] Get:10 http://ftpmaster.internal/ubuntu yakkety/main s390x gettext-base s390x 0.19.7-2ubuntu3 [47.7 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main s390x libglib2.0-0 s390x 2.49.2-2 [1045 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main s390x libicu57 s390x 57.1-2 [7465 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libxml2 s390x 2.9.4+dfsg1-1 [642 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main s390x time s390x 1.7-25.1 [26.6 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main s390x libsigsegv2 s390x 2.10-5 [13.5 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main s390x m4 s390x 1.4.17-5 [192 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x autoconf all 2.69-10 [321 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x autotools-dev all 20160430.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main s390x automake all 1:1.15-4ubuntu1 [510 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main s390x autopoint all 0.19.7-2ubuntu3 [406 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main s390x libcroco3 s390x 0.6.11-1 [76.5 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main s390x libunistring0 s390x 0.9.3-5.2ubuntu1 [262 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main s390x gettext s390x 0.19.7-2ubuntu3 [1052 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main s390x po-debconf all 1.0.19 [234 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main s390x libarchive-zip-perl all 1.58-1 [84.0 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main s390x libfile-stripnondeterminism-perl all 0.022-1 [11.7 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main s390x dh-strip-nondeterminism all 0.022-1 [4856 B] Get:30 http://ftpmaster.internal/ubuntu yakkety/main s390x libtool all 2.4.6-1 [194 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main s390x dh-autoreconf all 12 [15.8 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main s390x debhelper all 9.20160709ubuntu1 [707 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main s390x libboost1.61-dev s390x 1.61.0+dfsg-2.1 [6821 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/universe s390x libboost-test1.61.0 s390x 1.61.0+dfsg-2.1 [186 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/universe s390x libboost-test1.61-dev s390x 1.61.0+dfsg-2.1 [226 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/universe s390x libboost-test-dev s390x 1.61.0.2 [2898 B] Get:37 http://ftpmaster.internal/ubuntu yakkety/main s390x libbz2-dev s390x 1.0.6-8build1 [31.6 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libpcre16-3 s390x 2:8.39-1 [80.6 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libpcre32-3 s390x 2:8.39-1 [75.2 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety-proposed/main s390x libpcre3-dev s390x 2:8.39-1 [373 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main s390x zlib1g-dev s390x 1:1.2.8.dfsg-2ubuntu5 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.9 MB in 21s (1120 kB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12878 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-8_s390x.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_s390x.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../libpipeline1_1.4.1-2_s390x.deb ... Unpacking libpipeline1:s390x (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_s390x.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libpcrecpp0v5:s390x. Preparing to unpack .../libpcrecpp0v5_2%3a8.39-1_s390x.deb ... Unpacking libpcrecpp0v5:s390x (2:8.39-1) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../libmagic1_1%3a5.28-2ubuntu1_s390x.deb ... Unpacking libmagic1:s390x (1:5.28-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.28-2ubuntu1_s390x.deb ... Unpacking file (1:5.28-2ubuntu1) ... Selecting previously unselected package libasprintf0v5:s390x. Preparing to unpack .../libasprintf0v5_0.19.7-2ubuntu3_s390x.deb ... Unpacking libasprintf0v5:s390x (0.19.7-2ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.7-2ubuntu3_s390x.deb ... Unpacking gettext-base (0.19.7-2ubuntu3) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../libglib2.0-0_2.49.2-2_s390x.deb ... Unpacking libglib2.0-0:s390x (2.49.2-2) ... Selecting previously unselected package libicu57:s390x. Preparing to unpack .../libicu57_57.1-2_s390x.deb ... Unpacking libicu57:s390x (57.1-2) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../libxml2_2.9.4+dfsg1-1_s390x.deb ... Unpacking libxml2:s390x (2.9.4+dfsg1-1) ... Selecting previously unselected package time. Preparing to unpack .../time_1.7-25.1_s390x.deb ... Unpacking time (1.7-25.1) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../libsigsegv2_2.10-5_s390x.deb ... Unpacking libsigsegv2:s390x (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-5_s390x.deb ... Unpacking m4 (1.4.17-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20160430.1_all.deb ... Unpacking autotools-dev (20160430.1) ... Selecting previously unselected package automake. Preparing to unpack .../automake_1%3a1.15-4ubuntu1_all.deb ... Unpacking automake (1:1.15-4ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../autopoint_0.19.7-2ubuntu3_all.deb ... Unpacking autopoint (0.19.7-2ubuntu3) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../libcroco3_0.6.11-1_s390x.deb ... Unpacking libcroco3:s390x (0.6.11-1) ... Selecting previously unselected package libunistring0:s390x. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_s390x.deb ... Unpacking libunistring0:s390x (0.9.3-5.2ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.7-2ubuntu3_s390x.deb ... Unpacking gettext (0.19.7-2ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.58-1_all.deb ... Unpacking libarchive-zip-perl (1.58-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.022-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.022-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.022-1_all.deb ... Unpacking dh-strip-nondeterminism (0.022-1) ... Selecting previously unselected package libtool. Preparing to unpack .../libtool_2.4.6-1_all.deb ... Unpacking libtool (2.4.6-1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../dh-autoreconf_12_all.deb ... Unpacking dh-autoreconf (12) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20160709ubuntu1_all.deb ... Unpacking debhelper (9.20160709ubuntu1) ... Selecting previously unselected package libboost1.61-dev:s390x. Preparing to unpack .../libboost1.61-dev_1.61.0+dfsg-2.1_s390x.deb ... Unpacking libboost1.61-dev:s390x (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-test1.61.0:s390x. Preparing to unpack .../libboost-test1.61.0_1.61.0+dfsg-2.1_s390x.deb ... Unpacking libboost-test1.61.0:s390x (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-test1.61-dev:s390x. Preparing to unpack .../libboost-test1.61-dev_1.61.0+dfsg-2.1_s390x.deb ... Unpacking libboost-test1.61-dev:s390x (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-test-dev:s390x. Preparing to unpack .../libboost-test-dev_1.61.0.2_s390x.deb ... Unpacking libboost-test-dev:s390x (1.61.0.2) ... Selecting previously unselected package libbz2-dev:s390x. Preparing to unpack .../libbz2-dev_1.0.6-8build1_s390x.deb ... Unpacking libbz2-dev:s390x (1.0.6-8build1) ... Selecting previously unselected package libpcre16-3:s390x. Preparing to unpack .../libpcre16-3_2%3a8.39-1_s390x.deb ... Unpacking libpcre16-3:s390x (2:8.39-1) ... Selecting previously unselected package libpcre32-3:s390x. Preparing to unpack .../libpcre32-3_2%3a8.39-1_s390x.deb ... Unpacking libpcre32-3:s390x (2:8.39-1) ... Selecting previously unselected package libpcre3-dev:s390x. Preparing to unpack .../libpcre3-dev_2%3a8.39-1_s390x.deb ... Unpacking libpcre3-dev:s390x (2:8.39-1) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu5_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.8.dfsg-2ubuntu5) ... Selecting previously unselected package sbuild-build-depends-ncbi-blast+-dummy. Preparing to unpack .../sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libbz2-dev:s390x (1.0.6-8build1) ... Setting up libarchive-zip-perl (1.58-1) ... Setting up time (1.7-25.1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:s390x (2.10-5) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:s390x (2.49.2-2) ... No schema files found: doing nothing. Setting up libpipeline1:s390x (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:s390x (57.1-2) ... Setting up libboost1.61-dev:s390x (1.61.0+dfsg-2.1) ... Setting up libxml2:s390x (2.9.4+dfsg1-1) ... Setting up libmagic1:s390x (1:5.28-2ubuntu1) ... Setting up libcroco3:s390x (0.6.11-1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:s390x (0.9.3-5.2ubuntu1) ... Setting up libasprintf0v5:s390x (0.19.7-2ubuntu3) ... Setting up libpcrecpp0v5:s390x (2:8.39-1) ... Setting up libpcre32-3:s390x (2:8.39-1) ... Setting up libpcre16-3:s390x (2:8.39-1) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libboost-test1.61.0:s390x (1.61.0+dfsg-2.1) ... Setting up autopoint (0.19.7-2ubuntu3) ... Setting up zlib1g-dev:s390x (1:1.2.8.dfsg-2ubuntu5) ... Setting up libfile-stripnondeterminism-perl (0.022-1) ... Setting up libpcre3-dev:s390x (2:8.39-1) ... Setting up libboost-test1.61-dev:s390x (1.61.0+dfsg-2.1) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.28-2ubuntu1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-test-dev:s390x (1.61.0.2) ... Setting up libtool (2.4.6-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160709ubuntu1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.022-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-31-generic s390x (s390x) Toolchain package versions: binutils_2.26.1-1ubuntu2 dpkg-dev_1.18.9ubuntu2 g++-5_5.4.1-1ubuntu2 g++-6_6.1.1-11ubuntu12 gcc-5_5.4.1-1ubuntu2 gcc-6_6.1.1-11ubuntu12 libc6-dev_2.23-1ubuntu1 libstdc++-5-dev_5.4.1-1ubuntu2 libstdc++-6-dev_6.1.1-11ubuntu12 libstdc++6_6.1.1-11ubuntu12 linux-libc-dev_4.4.0-34.53 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~pre3 apt-transport-https_1.3~pre3 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu2 base-passwd_3.5.39 bash_4.3-15ubuntu1 binutils_2.26.1-1ubuntu2 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28-5ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-5_5.4.1-1ubuntu2 cpp-6_6.1.1-11ubuntu12 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_9.20160709ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.022-1 diffutils_1:3.3-3 dmsetup_2:1.02.130-1ubuntu1 dpkg_1.18.9ubuntu2 dpkg-dev_1.18.9ubuntu2 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.20.2-1ubuntu1 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1ubuntu2 g++-5_5.4.1-1ubuntu2 g++-6_6.1.1-11ubuntu12 gcc_4:6.1.1-1ubuntu2 gcc-5_5.4.1-1ubuntu2 gcc-5-base_5.4.1-1ubuntu2 gcc-6_6.1.1-11ubuntu12 gcc-6-base_6.1.1-11ubuntu12 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.18 init_1.42 init-system-helpers_1.42 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu3 libapt-pkg5.0_1.3~pre3 libarchive-zip-perl_1.58-1 libasn1-8-heimdal_1.7~git20160703+dfsg-1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.1.1-11ubuntu12 libattr1_1:2.4.47-2 libaudit-common_1:2.6.5-1ubuntu1 libaudit1_1:2.6.5-1ubuntu1 libblkid1_2.28-5ubuntu2 libboost-test-dev_1.61.0.2 libboost-test1.61-dev_1.61.0+dfsg-2.1 libboost-test1.61.0_1.61.0+dfsg-2.1 libboost1.61-dev_1.61.0+dfsg-2.1 libbz2-1.0_1.0.6-8build1 libbz2-dev_1.0.6-8build1 libc-bin_2.23-1ubuntu1 libc-dev-bin_2.23-1ubuntu1 libc6_2.23-1ubuntu1 libc6-dev_2.23-1ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-11ubuntu12 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.130-1ubuntu1 libdpkg-perl_1.18.9ubuntu2 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.28-5ubuntu2 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.022-1 libgcc-5-dev_5.4.1-1ubuntu2 libgcc-6-dev_6.1.1-11ubuntu12 libgcc1_1:6.1.1-11ubuntu12 libgcrypt20_1.7.2-2 libgdbm3_1.8.3-14 libglib2.0-0_2.49.2-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.4.14-1ubuntu1 libgomp1_6.1.1-11ubuntu12 libgpg-error0_1.24-1 libgssapi-krb5-2_1.14.2+dfsg-1ubuntu1 libgssapi3-heimdal_1.7~git20160703+dfsg-1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1 libheimbase1-heimdal_1.7~git20160703+dfsg-1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1 libicu57_57.1-2 libidn11_1.33-1 libisl15_0.17.1-1 libitm1_6.1.1-11ubuntu12 libk5crypto3_1.14.2+dfsg-1ubuntu1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1 libkrb5-3_1.14.2+dfsg-1ubuntu1 libkrb5support0_1.14.2+dfsg-1ubuntu1 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2.1ubuntu1 libmagic1_1:5.28-2ubuntu1 libmount1_2.28-5ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-4 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre16-3_2:8.39-1 libpcre3_2:8.39-1 libpcre3-dev_2:8.39-1 libpcre32-3_2:8.39-1 libpcrecpp0v5_2:8.39-1 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1ubuntu1 libpng16-16_1.6.23-1 libprocps4_2:3.3.10-4ubuntu2 libprocps6_2:3.3.12-1ubuntu2 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28-5ubuntu2 libsqlite3-0_3.13.0-1 libss2_1.43.1-1 libssl1.0.0_1.0.2g-1ubuntu7 libstdc++-5-dev_5.4.1-1ubuntu2 libstdc++-6-dev_6.1.1-11ubuntu12 libstdc++6_6.1.1-11ubuntu12 libsystemd0_231-1 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libudev1_231-1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5ubuntu2 libwind0-heimdal_1.7~git20160703+dfsg-1 libxml2_2.9.4+dfsg1-1 linux-libc-dev_4.4.0-34.53 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu6 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.28-5ubuntu2 multiarch-support_2.23-1ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu7 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu6 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 pkg-create-dbgsym_0.72 pkgbinarymangler_130 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_231-1 systemd-sysv_231-1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 time_1.7-25.1 tzdata_2016f-1 ubuntu-keyring_2016.05.13 util-linux_2.28-5ubuntu2 xz-utils_5.1.1alpha+20120614-2.1ubuntu1 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Aug 6 00:54:58 2016 UTC using RSA key ID F14A64A2 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.4.0-3.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.4.0 dpkg-source: info: unpacking ncbi-blast+_2.4.0.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.4.0-3.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying fix_version_extraction dpkg-source: info: applying support_recent_boost dpkg-source: info: applying support_x32 Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0 SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.4.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ncbi-blast+-2.4.0 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:94: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' debian/rules build-arch dh build-arch -Dc++ --with autotools_dev dh_testdir -a -O-Dc\+\+ dh_update_autotools_config -a -O-Dc\+\+ dh_autotools-dev_updateconfig -a -O-Dc\+\+ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-symbols CFLAGS_FOR_BUILD="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" configure: loading site script ./src/build-system/config.site configure: creating cache config.cache checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking for dpkg-architecture... /usr/bin/dpkg-architecture checking for gawk... no checking for mawk... mawk checking for GNU make... /usr/bin/make checking for /usr/bin/make... /usr/bin/make checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for basename... /usr/bin/basename checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking how to run /bin/grep -E quietly... /bin/grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... (cached) yes checking size of size_t... 8 checking for amq... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes checking how to run the C preprocessor... gcc -E checking whether cross-directory hard links work... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking iostream.h usability... no checking iostream.h presence... no checking for iostream.h... no checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking fstream.h usability... no checking fstream.h presence... no checking for fstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking strstrea.h usability... no checking strstrea.h presence... no checking for strstrea.h... no checking for inttypes.h... (cached) yes checking limits usability... yes checking limits presence... yes checking for limits... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for wstring... yes checking for socklen_t... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking cpuid.h usability... no checking cpuid.h presence... no checking for cpuid.h... no checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/sysinfo.h usability... yes checking sys/sysinfo.h presence... yes checking for sys/sysinfo.h... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking x86intrin.h usability... no checking x86intrin.h presence... no checking for x86intrin.h... no checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking paths.h usability... yes checking paths.h presence... yes checking for paths.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking whether time.h and sys/time.h may both be included... yes checking for gethostbyname_r... 6 checking for gethostbyaddr_r... 8 checking for getservbyname_r... 6 checking for getpwuid_r... 5 checking for getlogin_r... yes checking for localtime_r... yes checking for pthread_setconcurrency... yes checking for pthread_atfork... yes checking return type of localtime_r... struct checking whether pthread mutexes are available... yes checking for vprintf... yes checking for _doprnt... no checking for alarm... yes checking for asprintf... yes checking for atoll... yes checking for basename... yes checking for euidaccess... yes checking for fseeko... yes checking for fstat... yes checking for getgrouplist... yes checking for getopt... yes checking for getpagesize... yes checking for getpass... yes checking for getpassphrase... no checking for getpwuid... yes checking for getrusage... yes checking for gettimeofday... yes checking for getuid... yes checking for lchown... yes checking for lutimes... yes checking for memrchr... yes checking for putenv... yes checking for readpassphrase... no checking for readv... yes checking for select... yes checking for setenv... yes checking for statfs... yes checking for statvfs... yes checking for strcasecmp... yes checking for strdup... yes checking for strlcat... no checking for strlcpy... no checking for strndup... yes checking for strsep... yes checking for strtok_r... yes checking for sysmp... no checking for timegm... yes checking for usleep... yes checking for utimes... yes checking for vasprintf... yes checking for vsnprintf... yes checking for writev... yes checking return type of signal handlers... void checking whether select updates the timeout when interrupted... yes checking whether strcasecmp treats letters as lowercase... yes checking for Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... yes checking whether char is unsigned... yes checking for char... yes checking size of char... 1 checking for double... yes checking size of double... 8 checking for float... yes checking size of float... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 8 checking for long double... yes checking size of long double... 16 checking for long long... yes checking size of long long... 8 checking for short... yes checking size of short... 2 checking for void*... yes checking size of void*... 8 checking for wchar_t... yes checking size of wchar_t... 4 checking for __int64... no checking size of __int64... 0 checking for intptr_t... yes checking for uintptr_t... yes checking for struct sockaddr_in.sin_len... no checking for struct tm.tm_zone... yes checking for struct tm.__tm_zone... no checking whether function prototypes can use throw(...)... yes checking for obsolete string::compare() syntax... no checking whether the auto_ptr template class works... yes checking for min/max templates... yes checking whether new C++ streams have ios_base::... yes checking for ios(_base)::register_callback... yes checking for std::char_traits::... yes checking for SysV semaphores... yes checking for union semun... no checking which way the stack grows... down checking whether the preprocessor supports C99-style variadic macros... yes checking whether the preprocessor supports GNU-style variadic macros... yes checking syntax for marking deprecated functions... __attribute__((__deprecated__)) checking how to force inlining... inline __attribute__((always_inline)) checking whether the C compiler supports __attribute__((destructor))... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary checking whether the C compiler supports C99 restrict... __restrict__ checking whether the C++ compiler supports C99 restrict... __restrict__ checking syntax for marking functions that never return... __attribute__((__noreturn__)) checking syntax for marking functions whose result should be checked... __attribute__((warn_unused_result)) checking syntax for declaring thread-local variables... __thread checking syntax for marking types as packed to save memory... __attribute__((__packed__)) checking whether FIONBIO requires BSD_COMP to be defined... no checking whether INADDR_NONE is defined... yes checking whether unaligned reads are permissible... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -msse4.1... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -maes... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -fdiagnostics-color=always... yes checking whether in-house NCBI resources are available... no checking for gethostbyname in -lnsl... yes checking for connect in -lsocket... no checking for res_search in -lresolv... yes checking for inet_ntoa_r... no checking for getaddrinfo... yes checking for getnameinfo... yes checking for freehostent... no checking for gethostent_r... yes checking for getipnodebyaddr... no checking for getipnodebyname... no checking for inet_ntop... yes checking for socketpair... yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... no checking for library containing setkey... -lcrypt checking for library containing dlopen... -ldl checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... none required checking for library containing cplus_demangle... no checking for nanosleep... yes checking for pthread_condattr_setclock... yes checking for sched_yield... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for libpcre... yes checking for libgmp... no checking for libgcrypt-config... no checking for libgcrypt... no checking for libhogweed... no checking for libgnutls-config... no checking for libgnutls... no checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... no checking for python2.5... no checking for python2.6... no checking for python2.7... no checking for python3... no checking for perl... /usr/bin/perl checking for usable Perl libraries... no checking Boost version... 1_61 configure: WARNING: Untested Boost version; may prove incompatible. configure: WARNING: If so, please re-run this script with the flag --without-boost. checking for Boost library name tag... -gcc61-mt-1_61-64 (autodetected) checking for Boost.Regex... no checking for Boost.Spirit... yes checking for Boost.System... no checking for Boost.Filesystem... no checking for Boost.Iostreams... no checking for Boost.Program-Options... no checking for Boost.Test... included-only checking for Boost.Thread... no checking for the NCBI C toolkit... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for wx-config... no /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/configure: 1: ./configure.lineno: : Permission denied checking for wxWidgets... no checking for FastCGI libraries... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories... no checking for ORBacus... no checking for ICU... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for libexslt... no checking for Xerces-C++... no checking for Xalan-C++... no checking for Zorba... no checking for libsqlite3... no checking for ncbi-vdb... no checking for liboechem... no checking for libdrmaa... no checking for libmuparser... no checking for libhdf5_cpp... no checking for libjpeg... no checking for libpng... no checking for libtiff... no checking for libungif... no checking for libgif... no checking for libXpm... no checking for freetype-config... no checking for libftgl... no checking for libmagic... no checking for libmimetic... no checking for soapcpp2... no checking for wsdl2h... no checking for libgsoapssl++... no checking for libavrocpp... no checking for USC Cereal... no checking for libsasl2... no checking for libmongoclient... no checking for libgmock... no configure: looking for configurables below /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++... configure: ...done configure: updating cache config.cache configure: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/config.status config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/relocate.sh config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.null config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/sysdep.sh config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.rules_with_autodep config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.meta config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/install.sh config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.top_builddir config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/config.h config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.is_dll_support config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.dll config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/reconfigure.sh config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.rules config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/run_sybase_app.sh config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.mk config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.both config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/check.cfg config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect/services/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/cgi/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biotree/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcsubstance/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genesbyloc/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cn3d/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrezgene/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqtest/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/macro/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/access/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/proj/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/homologene/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mim/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/docsum/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/insdseq/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcassay/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/featdef/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/tinyseq/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mmdb/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/trackmgr/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/coords/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/objprt/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/remap/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/ncbimime/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/omssa/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbproj/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cdd/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/bitset/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib/Makefile.precompile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib/ncbicfg.c config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/edit/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/html/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask/Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/./Makefile config.status: creating /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc/ncbiconf_unix.h config.status: executing default commands /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib/ncbicfg.c is updated make[2]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/helpers TMPL=run_with_lock -kw all make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lm -lpthread -o run_with_lock /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f run_with_lock /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' make[2]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' Platform not defined for Linux s390x -- please fix me project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/4.1.2/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib TMPL=corelib -w all make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp: In function 'std::__cxx11::string ncbi::s_CArgs_ReadFromConsole(const string&, ncbi::EEchoInput, const char*)': /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp:2058:56: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, prompt.data(), prompt.length()); ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp:2087:50: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, thx.data(), thx.length()); ^ -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BIT/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:817:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbidiag.hpp:1803:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1767:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1830:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1855:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:3168:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:354:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ S=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -std=gnu+/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/version.cpp:456:12: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/version.cpp:456:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ +11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/guard.cpp -o guard.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxncbi.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/test_boost.cpp -o test_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/corelib/teamcity_messages.cpp -o teamcity_messages.o /bin/rm -f libtest_boost.so .libtest_boost.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_boost.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_boost.o teamcity_messages.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_boost.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtest_boost.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libtest_boost.so /bin/ln -f .test_boost.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[2]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[2]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util TMPL=util -w all make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/random_gen.cpp -o random_gen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/utf8.cpp -o utf8.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/checksum.cpp -o checksum.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/bytesrc.cpp -o bytesrc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/strbuffer.cpp -o strbuffer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/itree.cpp -o itree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/smalldns.cpp -o smalldns.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/strsearch.cpp -o strsearch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/logrotate.cpp -o logrotate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/format_guess.cpp -o format_guess.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/ascii85.cpp -o ascii85.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/md5.cpp -o md5.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/file_obsolete.cpp -o file_obsolete.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/unicode.cpp -o unicode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp: In static member function 'static void ncbi::CDictionaryUtil::Stem(const string&, std::__cxx11::string*)': /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ _MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary.cpp -o dictionary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp -o dictionary_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/sgml_entity.cpp -o sgml_entity.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/static_set.cpp -o static_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/transmissionrw.cpp -o transmissionrw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/miscmath.c -o miscmath.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/mutex_pool.cpp -o mutex_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/line_reader.cpp -o line_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/util_exception.cpp -o util_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/uttp.cpp -o uttp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/multi_writer.cpp -o multi_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/itransaction.cpp -o itransaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/thread_pool.cpp -o thread_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/scheduler.cpp -o scheduler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/distribution.cpp -o distribution.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/rangelist.cpp -o rangelist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/util_misc.cpp -o util_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/histogram_binning.cpp -o histogram_binning.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/table_printer.cpp -o table_printer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/retry_ctx.cpp -o retry_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/stream_source.cpp -o stream_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/file_manifest.cpp -o file_manifest.o /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxutil.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxutil.so /bin/ln -f .xutil.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xutil.dep make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util' make[2]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util' make[2]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[2]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[2]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/xregexp TMPL=xregexp -w all make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxregexp.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxregexp.so /bin/ln -f .xregexp.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/xregexp TMPL=xregexp_template_tester -w all make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.so .libxregexp_template_tester.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp_template_tester.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp_template_tester.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxregexp -lxncbi -lpcre /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxregexp_template_tester.so /bin/ln -f .xregexp_template_tester.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xregexp_template_tester.dep make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[2]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[2]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -ldl -lm -lpthread -o project_tree_builder /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f project_tree_builder /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GMP GCRYPT NETTLE GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB GMOCK PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make all_r or simply run /usr/bin/make in the current directory Alternatively, cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' cd c++/BUILD/build && \ make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build' /usr/bin/make -w -j --jobserver-fds=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/html' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' /usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=connect UNIX_PROJ="" sources= configurables=configurables.null /usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for 'sources'. /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect TMPL=connect -w -j --jobserver-fds=3,4 all make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_connect to make__connect_common per /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/.#lock-map. make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/Makefile.legacy_blast builddir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/Makefile.update_blastdb builddir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c -o ncbi_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c: In function ‘CORE_SetLOGFILE_NAME_Ex’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c:147:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:77: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_DoLog’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:494:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(112, level, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:534:13: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(109, level, data, size, ^~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:567:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(113, level, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:575:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_InitAPI_’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:852:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Secure socket layer (SSL) has not" ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostname’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:164:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:997:13: note: in expansion of macro ‘CORE_LOG_ERRNO_EXX’ CORE_LOG_ERRNO_EXX(103, eLOG_Error, ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1006:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(104, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname_’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1139:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_getlocalhostaddress’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1179:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1205:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(155, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr_’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1336:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1370:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘x_TryLowerSockFileno’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1479:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(111, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Select_’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1604:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1733:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Poll_’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1877:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2022:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_IsConnected_’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2596:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2606:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2641:25: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Recv’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2797:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Read_’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2977:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Send’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3331:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_WritePending’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3480:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(12, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Shutdown’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3652:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3689:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3753:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Close_’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3817:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3833:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3863:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3922:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Connect_’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4022:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(131, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4039:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(142, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4058:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4084:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(23, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4128:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(24, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4143:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4154:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4174:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(129, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4215:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(25, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4259:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(26, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Create’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4351:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateOnTop’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4404:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(47, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c: In function ‘ConnNetInfo_Log’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:114:54: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1297:9: note: in expansion of macro ‘LOG_WRITE’ LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4427:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(148, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4465:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(48, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4506:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(50, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4520:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_ConnectEx’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1515:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4583:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(132, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4605:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1528:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4616:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4636:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1556:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4651:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1567:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateListening’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4703:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(144, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1613:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4737:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(34, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1626:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4783:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(35, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1665:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_Connect’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1698:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(9, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4838:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4859:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(150, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4910:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(38, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1738:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4929:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(37, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4980:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(110, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4994:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(115, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Accept’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5041:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(39, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5097:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(40, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5156:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(41, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5215:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5226:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5237:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5257:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_CloseListening’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5302:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(44, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5331:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(45, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_RecvMsg’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5419:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5467:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_SendMsg’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5502:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5518:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(88, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5527:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(89, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5577:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(90, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5623:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Create’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5666:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5676:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5688:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5698:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5717:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(116, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Close’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5779:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(117, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘LSOCK_GetOSHandleEx’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5990:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(46, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Reconnect’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6178:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(52, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6188:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(53, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6200:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(51, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Shutdown’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6230:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(54, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6237:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(55, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6245:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Wait’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6374:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(56, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6402:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(57, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6416:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(58, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6430:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(59, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6439:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(60, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6449:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(61, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6459:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(62, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetTimeout’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6552:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(63, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetTimeout’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6593:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(64, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Read’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6635:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(65, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6645:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(66, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_ReadLine’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6676:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(125, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Pushback’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6752:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(67, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Write’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6804:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(68, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6831:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(69, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6841:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(70, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Abort’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6860:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(71, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connecd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources ct/ncbi_socket.c:6867:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(72, eLOG_Error, ^~~~~~~~~~~ make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetOSHandleEx’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7018:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(73, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetCork’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7081:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(158, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7088:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(159, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7101:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_DisableOSSendDelay’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7118:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(156, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/conne/usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. ct/ncbi_socket.c:7125:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(157, eLOG_Error, ^~~~~~~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7138:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_CreateEx’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7179:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(76, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7218:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(77, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7268:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(130, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Bind’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7298:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(79, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7305:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(78, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7323:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7339:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(114, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Connect’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7368:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(82, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7375:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(81, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7394:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(83, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7407:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(84, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7436:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(85, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WaitMsg’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7464:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(96, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7471:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(95, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_RecvMsg’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7510:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(93, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7517:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(92, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SendMsg’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7554:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(87, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7561:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(86, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WipeMsg’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7593:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(98, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7600:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(97, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘x_ReInit’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:272:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:301:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, Close, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:305:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, ReInit, eLOG_Error, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘s_Open’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:381:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(5, Open, eLOG_Error, "Failed to open connection"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_CreateEx’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:423:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(2, Create, eLOG_Error, "NULL connector"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReInit’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:444:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:444:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetType’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:452:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:452:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Description’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:461:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:461:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetPosition’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:473:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:473:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:486:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(31, GetPosition, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetTimeout’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:502:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7620:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(99, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:502:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:542:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetTimeout’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:557:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:557:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:565:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(11, GetTimeout, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SetBroadcast’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:580:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Wait’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:596:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:596:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:640:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Write’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:661:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7638:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(101, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:701:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(17, Write, level, "Unable to write data"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7645:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(100, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Write’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:743:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:743:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7665:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(102, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Pushback’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:778:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:778:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Flush’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:798:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:798:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:812:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(21, Flush, eLOG_Warning, "Failed to flush"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Read’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:837:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:876:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(32, Read, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetReuseAddress’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:902:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(23, Read, level, "Unable to read data"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7827:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Read’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:953:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:953:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReadLine’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1002:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1002:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1050:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(35, ReadLine, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Status’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1069:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1069:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Close’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1108:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1108:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetCallback’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1128:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1128:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1134:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetSOCK’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1155:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1155:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetupSSL’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:8218:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Cannot reset SSL while it is in use"); ^~~~~~~~ cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker -w -j --jobserver-fds=3,4 all cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Remove’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:42:3: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:64:13: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(34, eLOG_Error, ^~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Add’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:42:3: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(33, eLOG_Error, ^~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c:171:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(163, eLOG_Error, ^~~~~~~~~~~ cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' bi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -WerroIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Adjust’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:367:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:382:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:408:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:423:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:433:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:457:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Connect’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:560:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:700:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(20, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ConnectAndSend’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:911:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘x_ReadChunkHead’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1042:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadData’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1113:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(24, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:115: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Create’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:243:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:264:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1137:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(25, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_AttachFast’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:288:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:297:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadHeader’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1211:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(7, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Attach’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:326:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(34, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1248:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, level, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Find’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:422:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1310:9: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1327:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1346:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Alloc’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:630:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:636:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1394:25: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:683:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Free’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:805:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:811:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:824:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:832:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:844:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(14, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_FreeFast’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:856:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:862:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1553:21: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:876:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1569:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(11, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:887:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:894:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Trim’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:916:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(30, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1627:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:951:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(31, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1632:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1643:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:978:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(32, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1651:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(14, eLOG_Note, s, n, ^~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Walk’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1000:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(28, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1660:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1014:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(26, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1017:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(27, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1029:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Read’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1116:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1831:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1131:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1149:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1876:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1160:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(24, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Walk’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1176:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Destroy’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1278:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(33, eLOG_Error, ^~~~~~~~~~~ cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c: In function ‘x_ServiceName’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:84:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:93:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c: In function ‘x_Open’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:319:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c: In function ‘s_Resolve’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c:198:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_OpenDispatcher’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:94:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_ParseHeader’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:169:49: warning: format ‘%n’ expects argument of type ‘int *’, but argument 7 has type ‘unsigned int *’ [-Wformat=] if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:170:51: warning: format ‘%n’ expects argument of type ‘int *’, but argument 5 has type ‘unsigned int *’ [-Wformat=] || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_Open’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:817:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:843:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:1033:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c: In function ‘s_SendRcpt’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:389:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(3, "Recipient address is too long"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:392:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:400:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(4, write_error); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:403:13: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(5, proto_error, buf); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c: In function ‘CORE_SendMailEx’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:455:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(6, "Invalid magic cookie"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:460:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(7, "At least one message recipient must be specified"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:470:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:477:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:482:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(10, "Unable to get local host name"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:487:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(11, "Write error in HELO command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:495:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(13, "Write error in MAIL command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:498:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:519:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(15, "Write error in DATA command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:552:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(32, "Write error in sending Date"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:559:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(33, "Write error in sending From"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:567:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(17, "Write error in sending Subject"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:574:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(18, "Write error in sending To"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:581:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(19, "Write error in sending Cc"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:585:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:596:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(20, "Write error in sending mailer information"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:623:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(21, "Write error while sending custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:626:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(22, "Header write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:628:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(23, "Write error while finalizing custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:636:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(24, "Write error in message body delimiter"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:662:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(25, "Write error while sending message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:665:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(26, "Body write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:668:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(27, "Write error while finalizing message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:671:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(28, "Write error while finalizing message"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:676:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:679:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(30, "Write error in QUIT command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:681:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); ^~~~~~~~~~~~~~~~ cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' r=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connecIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:50: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPCloseData’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:199:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:204:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:218:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:222:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:236:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPReply’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:283:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPCommandEx’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:359:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPLogin’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:592:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPPassive’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:950:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPXfer’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1110:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPPollCntl’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1633:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1899:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Write’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1974:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_CreateConnector’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:2284:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); ^~~~~~~~ cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringConcat’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:429:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "g_LBOS_StringConcat: No RAM. Returning NULL."); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringNConcat’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:517:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_RegGet’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:542:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "g_LBOS_RegGet: No RAM. Returning NULL."); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:555:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "g_LBOS_RegGet: Buffer " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_ComposeLBOSAddress’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:588:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ComposeLBOSAddress: " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_GetLBOSAddressEx’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:696:5: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Trace, "Getting LBOS addresses..."); ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:710:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Use of custom LBOS address was " ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:717:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Did not manage to copy custom " ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:725:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS using " ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:735:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS in " ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadRole’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:778:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("s_LBOS_ReadRole: " ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:786:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadRole: " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:811:25: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadDomain’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:866:17: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("s_LBOS_ReadDomain: " ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:874:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadDomain: " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:888:17: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:921:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("LBOS mapper: " ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:929:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadLBOSResolve: " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:943:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:954:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (s_LBOS_Lbosresolver == NULL) ^~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:957:13: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ s_LBOS_Lbosresolver = strdup(str + 7); ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConnectURL’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:993:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Parsing URL \"%s\"", url)); ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:995:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot parse URL"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:998:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Creating HTTP%s connector", ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1005:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1008:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Note, "Creating connection"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1010:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create connection"); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_UrlReadAll’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1068:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1080:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1125:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1139:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ResolveIPPort’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1175:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1235:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_FillCandidates’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1338:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1344:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Ho servers of \"%s\" found by LBOS", ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1349:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1362:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckAnnounceArgs’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1392:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1399:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1414:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, incorrect port."); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1418:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1423:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1428:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckDeannounceArgs’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1442:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1448:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1453:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1458:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_PerformRequest’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1496:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Replace0000WithIP’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1550:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1559:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1566:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConstructData’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1728:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Initialize’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1799:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1801:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1810:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Note, "LBOS is turned ON in config."); ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1812:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1828:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ParseHeader’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1876:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Reset’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1939:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘SERV_LBOS_Open’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2068:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2076:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2091:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2106:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2115:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Announce’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2207:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2240:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2248:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2254:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2264:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2274:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_AnnounceFromRegistry’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2393:53: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘unsigned int *’ [-Wformat=] if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Deannounce’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2445:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_DeannounceAll’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2580:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "RAM error. Cancelling deannounce all."); ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_heap.c:142:1: warning: ‘s_CompoHeapIsValid’ defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_heap.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/composition_adjustment.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c:31:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c:31:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/tables TMPL=tables -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c:86:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect TMPL=xconnect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/.#lock-map. Waiting for /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect/make__connect_common.lockmake[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtables.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libtables.so /bin/ln -f .tables.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/sequtil TMPL=sequtil -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:205:1: warning: ‘s_DistinctAlignmentsLength’ defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:190:1: warning: ‘s_AlignmentsAreSorted’ defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ tor.c -o ncbi_ftp_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /bin/rm -f libconnect.so .libconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lnsl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libconnect.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libconnect.so /bin/ln -f .connect.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.connect.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /usr/bin/gcc -std=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/smith_waterman.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/creaders TMPL=creaders -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libcomposition_adjustment.so /bin/ln -f .composition_adjustment.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.so .libcreaders.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libcreaders.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libcreaders.so /bin/ln -f .creaders.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.creaders.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp: In member function ‘void ncbi::CGeneInfo::ToString(std::__cxx11::string&, bool, const string&, unsigned int) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:182:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(GetDescription(), " ", strDescrWords); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp: In static member function ‘static void ncbi::CGeneFileUtils::ReadGeneInfo(ncbi::CNcbiIfstream&, int, ncbi::CRef&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:166:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(strBuf, "\t", strItems); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libsequtil.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libsequtil.so /bin/ln -f .sequtil.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' y '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html TMPL=html -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgene_info.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgene_info.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libgene_info.so /bin/ln -f .gene_info.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' . Acquired /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect/make__connect_common.lock for PID 64414 (make__connect_common) cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/html.cpp -o html.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/components.cpp -o components.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/co-Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxhtml.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxhtml.so /bin/ln -f .xhtml.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/html' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/html' cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util' cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial TMPL=serial -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gene_info_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api TMPL=compress -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/typeinfo.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objectinfo.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi TMPL=cgi -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/.#lock-map. nnect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connecIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objectiter.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ tor.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -lnsl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxconnect.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxconnect.so /bin/ln -f .xconnect.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectio.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objectio.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/typeref.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthreadIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/stdtypes.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/enumerated.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core TMPL=blast -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_TwoHit’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:489:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:496:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_OneHit’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:756:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:763:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ At top level: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_diagnostics.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c: In function ‘BLAST_PreliminarySearchEngine’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:1263:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:1389:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:1467:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ At top level: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:57:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_extend.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_filter.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_gapalign.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/ptrinfo.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hits.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/autoptrinfo.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_itree.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_kappa.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/continfo.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_lookup.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aalookup.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c: In function ‘BlastChooseProteinScanSubject’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:572:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastAaScanSubject; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:575:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:580:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; ^ At top level: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nalookup.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/stltypes.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaChooseScanSubject’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:296:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:298:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_SmallNaChooseScanSubject’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1325:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1332:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1334:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1339:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1341:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_2; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1348:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1350:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1352:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1359:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1365:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1369:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_1Mod4; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1373:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_2Mod4; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1377:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_3Mod4; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_MBChooseScanSubject’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2583:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2585:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2587:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2589:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2597:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2599:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2601:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2606:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2608:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2610:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2612:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2618:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2621:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2624:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2627:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2638:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘BlastChooseNucleotideScanSubjectAny’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2657:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2660:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2662:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_MBScanSubject_Any; ^ At top level: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ 64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_message.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_options.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘s_IsSeedMasked’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:489:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastNaWordFinder’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1605:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1606:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1618:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1619:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1626:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1627:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1640:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘MB_IndexedWordFinder’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1706:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1708:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastChooseNaExtend’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1778:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_MBLookup; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1782:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1785:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1787:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1791:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_SmallNaLookup; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1795:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1799:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1801:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtend; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1805:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_NaLookup; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1809:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1812:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1814:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ At top level: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi_priv.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/stdtypes.cpp -o stdtypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seg.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seqsrc.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0m/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_setup.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_stat.c:52:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/classinfob.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback.c:52:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c: In function ‘BlastProgram2Number’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c:309:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("phiblastp", program) == 0) ^~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c:312:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ return 0; ^~~~~~ At top level: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gapinfo.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/greedy_align.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/member.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_collector.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_besthit.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ k/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_F/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_culling.c:43:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c: In function ‘s_FwdCompareHSPs’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c:138:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c:141:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (h1->query.offset < h2->query.offset) ^~ At top level: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/lookup_util.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/lookup_wrap.c:39:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/matrix_freq_ratios.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/ncbi_std.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/ncbi_math.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_encoding.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ ILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /usr/bin/gcc -std=g/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/pattern.c:58:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_extend.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_gapalign.c:57:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_lookup.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/classinfo.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_parameters.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_posit.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2361:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; ^~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2361:23: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_program.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ nu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/pattern.c -o pattern.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_program.c -o blast_program.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/buil/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_query_info.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_tune.c:37:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_sw.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_dynarray.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/split_query.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gencode_singleton.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback_mt_priv.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ d/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedanti/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream_mt_utils.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/variant.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ c -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast.so /bin/ln -f .blast.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.blast.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcompress.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxcompress.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxcompress.so /bin/ln -f .xcompress.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xcompress.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/choice.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/choiceptr.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/choiceptr.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/classinfob.cpp -o classinfob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/member.cpp -o member.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/classinfo.cpp -o classinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/choice.cpp -o choice.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/choiceptr.cpp -o choiceptr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c+In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/aliasinfo.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objistr.cpp:46: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objostr.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objcopy.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objcopy.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxcgi.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxcgi.so /bin/ln -f .xcgi.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/iterator.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/serial.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/delaybuf.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/pack_string.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/pack_string.cpp:32: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ +/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objistr.cpp -o objistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objostr.cpp -o objostr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objcopy.cpp -o objcopy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/iterator.cpp -o iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/serial.cpp -o serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/delaybuf.cpp -o delaybuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/pack_string.cpp -o pack_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objhook.cpp -o objhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/exception.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objhook.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostrasn.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objostrasn.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objistrasn.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostrasnb.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objostrasnb.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistrasnb.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objistrasnb.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostrxml.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objostrxml.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistrxml.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objistrxml.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objostrasn.cpp -o objostrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objistrasn.cpp -o objistrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objostrxml.cpp -o objostrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objistrxml.cpp -o objistrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostrjson.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objostrjson.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistrjson.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objistrjson.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/serialobject.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/rpcbase_impl.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/rpcbase.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ E -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objostrjson.cpp -o objostrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/objistrjson.cpp -o objistrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/serializable.cpp -o serializable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/pathhook.cpp -o pathhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxser.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxser.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxser.so /bin/ln -f .xser.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool TMPL=datatool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/statictype.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/datatool.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/enumtype.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/reftype.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/unitype.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/value.cpp -o value.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/module.cpp -o module.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/generate.cpp -o generate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/filecode.cpp -o filecode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/code.cpp -o code.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/fileutil.cpp -o fileutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/alexer.cpp -o alexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/aparser.cpp -o aparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/parser.cpp -o parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/lexer.cpp -o lexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/exceptions.cpp -o exceptions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/comments.cpp -o comments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -o datatool /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f datatool /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh pub all make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh biblio all cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh medline all make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh general all Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general' /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blastdb all cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqcode all /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh genome_collection all /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/Makefile.sources builddir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -w -j --jobserver-fds=3,4 all Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode' Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb' cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqset all /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh gencoll_client all Waiting for /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/make_asn.lockmake[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh scoremat all Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqedit all /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqsplit all Platform not defined for Linux s390x -- please fix me make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' status=0 ; \ MAKE="/usr/bin/make -w -j --jobserver-fds=3,4"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../$x ; \ (cd $d && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqalign' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqalign' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqblock' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqblock' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objectPlatform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh submit all make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh variation all Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blast all /usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources Platform not defined for Linux s390x -- please fix me make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1 && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh id1 all s/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqres' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opmPlatform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqtable' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seq all /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' Platform not defined for Linux s390x -- please fix me make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2 && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh id2 all cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1 && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh taxon1 all Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq' Platform not defined for Linux s390x -- please fix me make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2' /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blastxml all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1' /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' Platform not defined for Linux s390x -- please fix me cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2 && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blastxml2 all make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2 && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh entrez2 all File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml' Platform not defined for Linux s390x -- please fix me /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh gbseq all Platform not defined for Linux s390x -- please fix me File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh medlars all make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2' Platform not defined for Linux s390x -- please fix me /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq' Platform not defined for Linux s390x -- please fix me /usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh pubmed all make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh mla all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars' /usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3 && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh taxon3 all Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla' Platform not defined for Linux s390x -- please fix me /usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh valid all /usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' cd objects/valerr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources Platform not defined for Linux s390x -- please fix me make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr && /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh valerr all make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid' /usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general TMPL=general -w -j --jobserver-fds=3,4 all make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' Platform not defined for Linux s390x -- please fix me /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode TMPL=seqcode -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr' /usr/bin/make[4] (Makefile.valerr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqcode/Seq_code_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqcode/Seq_code_set.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode/Seq_code_set.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml TMPL=blastxml -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:4:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/Dbtag.cpp: In member function ‘std::__cxx11::string ncbi::objects::CDbtag::GetUrl(const string&) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/Dbtag.cpp:740:69: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( taxname, " ", taxname_parts, NStr::eMergeDelims ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:9:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp: In member function ‘ncbi::CConstRef ncbi::objects::CUser_field::GetFieldRef(const string&, const string&, ncbi::NStr::ECase) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp:231:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:9:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp: In member function ‘ncbi::CRef ncbi::objects::CUser_field::SetFieldRef(const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp:347:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:9:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp: In member function ‘bool ncbi::objects::CUser_field::DeleteField(const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp:406:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:10:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp: In member function ‘ncbi::CConstRef ncbi::objects::CUser_object::GetFieldRef(const string&, const string&, ncbi::NStr::ECase) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp:85:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:10:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp: In member function ‘ncbi::CRef ncbi::objects::CUser_object::SetFieldRef(const string&, const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp:161:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastxml/BlastOutput_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastxml/BlastOutput.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml/BlastOutput.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqcode.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqcode.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqcode.so /bin/ln -f .seqcode.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/Date_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastxml.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastxml.so /bin/ln -f .blastxml.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/uoconv.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/uoconv.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqcode' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' ./usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset' Acquired /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/make_asn.lock for PID 1118 (make_asn) /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat' Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqtable' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2 TMPL=entrez2 -w -j --jobserver-fds=3,4 all File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastxml2/BlastOutput2_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastxml2/BlastOutput2.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/BlastOutput2.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/entrez2/E2Reply_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/entrez2/E2Reply.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2/E2Reply.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq TMPL=gbseq -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/gbseq/GBAltSeqData_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/gbseq/GBAltSeqData.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq/GBAltSeqData.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgeneral.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libgeneral.so /bin/ln -f .general.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.general.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio TMPL=biblio -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.so .libblastxml2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastxml2.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastxml2.so /bin/ln -f .blastxml2.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.blastxml2.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:5:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/Auth_list.cpp: In member function ‘void ncbi::objects::CAuth_list::ConvertMlToStandard()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/Auth_list.cpp:226:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*it, " ", tokens); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:5:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/Auth_list.cpp:242:49: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(init, "", letters); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libentrez2.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libentrez2.so /bin/ln -f .entrez2.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid TMPL=valid -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:2:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp: In member function ‘ncbi::objects::CComment_rule::TErrorList ncbi::objects::CComment_rule::IsValid(const ncbi::objects::CUser_object&) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp:290:28: warning: unused variable ‘sev’ [-Wunused-variable] CField_rule::TSeverity sev; ^~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:3:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_set.cpp: In static member function ‘static std::__cxx11::list > ncbi::objects::CComment_set::GetKeywords(const ncbi::objects::CUser_object&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_set.cpp:181:48: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(kywd, ";", keywords); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/static_set.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/valid___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.so .libgbseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgbseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbseq__.o gbseq___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgbseq.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libgbseq.so /bin/ln -f .gbseq.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.gbseq.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2 TMPL=entrez2cli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/citation_base.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/entrez2/entrez2_client_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/entrez2/entrez2_client.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libbiblio.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lgeneral -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libbiblio.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libbiblio.so /bin/ln -f .biblio.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline TMPL=medline -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.so .libvalid.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalid.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC valid__.o valid___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libvalid.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libvalid.so /bin/ln -f .valid.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.valid.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars TMPL=medlars -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/medline/DocRef_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/medline/DocRef.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/DocRef.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/medlars/Medlars_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/medlars/Medlars_entry.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars/Medlars_entry.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2cli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lentrez2 -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libentrez2cli.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libentrez2cli.so /bin/ln -f .entrez2cli.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/DocRef_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars/Medlars_entry_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.so .libmedlars.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedlars.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medlars__.o medlars___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmedlars.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libmedlars.so /bin/ln -f .medlars.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.medlars.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedline.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmedline.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libmedline.so /bin/ln -f .medline.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub TMPL=pub -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed TMPL=pubmed -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/pubmed/Pubmed_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/pubmed/Pubmed_entry.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed/Pubmed_entry.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/pub/Pub_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/pub/Pub.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/Pub.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/Pub_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.so .libpubmed.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpubmed.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pubmed__.o pubmed___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libpubmed.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libpubmed.so /bin/ln -f .pubmed.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.pubmed.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpub.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libpub.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libpub.so /bin/ln -f .pub.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla TMPL=mla -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq TMPL=seq -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/Align_def.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/mla/Error_val_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/mla/Error_val.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla/Error_val.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla/mla__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:2, from seqalign__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla/Error_val_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla/mla___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp:15:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/Linkage_evidence.cpp: In static member function ‘static bool ncbi::objects::CLinkage_evidence::GetLinkageEvidence(ncbi::objects::CLinkage_evidence::TLinkage_evidence&, const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/Linkage_evidence.cpp:64:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( linkage_evidence, ";", linkage_evidence_vec ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/Align_def.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: ‘void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: ‘void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqblock/EMBL_block_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqblock/EMBL_block.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/seqblock__.cpp:2, from seqblock__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.so .libmla.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmla.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla__.o mla___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmla.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libmla.so /bin/ln -f .mla.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.mla.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla TMPL=mlacli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/mla/mla_client_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/mla/mla_client.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:3:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BioSource.cpp: In function ‘void ncbi::objects::s_GetWordListFromText(std::__cxx11::string&, ncbi::objects::TWordList&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BioSource.cpp:1335:59: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, " ", word_list, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp: In static member function ‘static const TLegalRepeatTypeSet& ncbi::objects::CGb_qual::GetSetOfLegalRepeatTypes()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] }; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp: In static member function ‘static bool ncbi::objects::CGb_qual::IsValidRptTypeValue(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:213:39: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(val, ",", rpt_types); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp: In static member function ‘static const TLegalPseudogeneSet& ncbi::objects::CGb_qual::GetSetOfLegalPseudogenes()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] }; ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:25:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp: In function ‘void ncbi::objects::s_ProcessInstitutionCollectionCodeLine(const ncbi::CTempString&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp:206:38: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", tokens); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:25:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::COrgMod::FixStrain(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp:659:38: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(strain, ";", words); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:26:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp: In member function ‘void ncbi::objects::COrgName::x_ResetAttribFlag(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp:133:40: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split( attr, s_flagDelim, lVals ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:26:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp: In member function ‘bool ncbi::objects::COrgName::x_GetAttribFlag(const string&) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp:154:40: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split( attr, s_flagDelim, lVals ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function ‘static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function ‘ncbi::CTempString ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:47:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp: In member function ‘void ncbi::objects::CSeq_feat::RemoveExceptText(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp:355:60: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split(GetExcept_text(), ",", list_of_except_texts); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:47:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp: In member function ‘ncbi::AutoPtr > > > ncbi::objects::CSeq_feat::GetTempExceptionTextSet() const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp:418:27: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::TSplitFlags, std::vector*, ncbi::CTempString_Storage*)’ is deprecated [-Wdeprecated-declarations] NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2686:28: note: declared here vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static bool ncbi::objects::CSubSource::IsCollectionDateAfterTime(const string&, time_t, bool&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:351:48: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(collection_date, "/", pieces); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static void ncbi::objects::CSubSource::IsCorrectDateFormat(const string&, bool&, bool&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:404:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(date_string, "/", pieces); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static size_t ncbi::objects::CSubSource::CheckDateFormat(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:453:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(date_string, "/", pieces); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:457:14: warning: unused variable ‘first_bad’ [-Wunused-variable] bool first_bad = false; ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:458:14: warning: unused variable ‘first_future’ [-Wunused-variable] bool first_future = false; ^~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:459:14: warning: unused variable ‘second_bad’ [-Wunused-variable] bool second_bad = false; ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:460:14: warning: unused variable ‘second_future’ [-Wunused-variable] bool second_future = false; ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::GetCollectionDateProblem(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:509:10: warning: unused variable ‘bad_format’ [-Wunused-variable] bool bad_format = false; ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:510:10: warning: unused variable ‘in_future’ [-Wunused-variable] bool in_future = false; ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::vector > ncbi::objects::CSubSource::x_GetDateTokens(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:739:12: warning: unused variable ‘i’ [-Wunused-variable] size_t i; ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static void ncbi::objects::CSubSource::IsCorrectLatLonFormat(std::__cxx11::string, bool&, bool&, bool&, bool&, double&, double&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:1153:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(lat_lon, " ", pieces); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::ValidateLatLonCountry(const string&, std::__cxx11::string&, bool, ncbi::objects::CSubSource::ELatLonCountryErr&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:1985:67: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(lat_lon, ",", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static bool ncbi::objects::CSubSource::IsValidSexQualifierValue(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:2336:35: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str," ,/",words); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::FixSexQualifierValue(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:2374:35: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str," ,/",words); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function ‘void ncbi::objects::s_ProcessCellLineLine(const ncbi::CTempString&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:2560:38: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", tokens); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CCountries::CapitalizeFirstLetterOfEveryWord(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3391:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(phrase," \t\r\n",words); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::vector > ncbi::objects::CCountries::x_Tokenize(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3523:37: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(val,",:()",tokens); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function ‘bool ncbi::objects::s_ContainsWholeWord(const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3554:74: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(test, word, 0, NPOS, NStr::eFirst, case_sense); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3560:77: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] pos = NStr::Find(test, word, pos + 1, NPOS, NStr::eFirst, case_sense); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In member function ‘void ncbi::objects::CLatLonCountryMap::x_InitFromDefaultList(const char* const*, int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:4637:47: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", tokens); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client_.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:10:0, from seqloc__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Seq_id.cpp: In static member function ‘static ncbi::SIZE_TYPE ncbi::objects::CSeq_id::ParseIDs(ncbi::objects::CBioseq_Base::TId&, const ncbi::CTempString&, ncbi::objects::CSeq_id::TParseFlags)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Seq_id.cpp:1859:60: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split(ss, "|", fasta_pieces, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.so .libmlacli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmlacli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla_client.o mla_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lmla -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmlacli.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libmlacli.so /bin/ln -f .mlacli.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.mlacli.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqres/Byte_graph_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqres/Byte_graph.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/Byte_graph.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/seqres__.cpp:2, from seqres__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqtabIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqtable/BVector_data_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqtable/BVector_data.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/Align_def_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ le__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -std=gnu++11 -c -Wall In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_data_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_data.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seqport_util.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seqport_util.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_tree.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_tree.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_handle.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_mapper.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_mapper.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_loc_mapper_base.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seqlocinfo.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seqlocinfo.cpp:32: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp:1488:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( row_n == p_row ) { ~~~~~~^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/sofa_type.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/sofa_map.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_loc_from_string.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_from_string.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseq.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libseq.so /bin/ln -f .seq.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation TMPL=variation -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll TMPL=genome_collection -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb TMPL=blastdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset TMPL=seqset -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/Bioseq_set.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/variation/VariantPlacement_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/variation/VariantPlacement.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation/VariantPlacement.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation/variation__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation/VariantPlacement_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation/variation___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastdb.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastdb.so /bin/ln -f .blastdb.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1 TMPL=taxon1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/Taxon1_data.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.so .libvariation.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvariation.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC variation__.o variation___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libvariation.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libvariation.so /bin/ln -f .variation.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3 TMPL=taxon3 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3/SequenceOfInt.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/gb_release_file.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/gb_release_file.cpp:32: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqset.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqset.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqset.so /bin/ln -f .seqset.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon3/taxon3.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgenome_collection.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgenome_collection.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libgenome_collection.so /bin/ln -f .genome_collection.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat TMPL=scoremat -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/scoremat/BlockProperty_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/scoremat/BlockProperty.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat/BlockProperty.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon3/cached_taxon3.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3/cached_taxon3.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit TMPL=seqedit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon3/cached_taxon3.cpp -o cached_taxon3.o /bin/rm -f libtaxon3.so .libtaxon3.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon3.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon3__.o taxon3___.o taxon3.o cached_taxon3.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtaxon3.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libtaxon3.so /bin/ln -f .taxon3.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.taxon3.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libscoremat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libscoremat.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libscoremat.so /bin/ln -f .scoremat.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/cache.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/utils.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit TMPL=seqsplit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqedit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqedit.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqedit.so /bin/ln -f .seqedit.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit TMPL=submit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/ctreecont.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/ctreecont.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/submit/Contact_info_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/submit/Contact_info.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit/Contact_info.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit/submit__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast TMPL=blast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit/Contact_info_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit/submit___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/blast__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtaxon1.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libtaxon1.so /bin/ln -f .taxon1.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1 TMPL=id1 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsubmit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libsubmit.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libsubmit.so /bin/ln -f .submit.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/id1/Entry_complexities_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/id1/Entry_complexities.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1/Entry_complexities.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1/id1__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/blast___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/NCBI_Blast4_module.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/names.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/names.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1/Entry_complexities_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1/id1___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqsplit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqsplit.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqsplit.so /bin/ln -f .seqsplit.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' cd objects/valerr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valerr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr TMPL=valerr -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/valerr/ValidErrItem.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr/ValidErrItem.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libid1.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libid1.so /bin/ln -f .id1.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.id1.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr/ValidErrItem_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr TMPL=objmgr -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.so .libvalerr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalerr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC valerr__.o valerr___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libvalerr.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libvalerr.so /bin/ln -f .valerr.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.valerr.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_table_setters.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_info.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_annot_info.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_info.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp: In constructor ‘ncbi::objects::CSeqTableSetExt::CSeqTableSetExt(const ncbi::CTempString&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp:184:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(name, ".", subfields); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/objmgr_exception.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers TMPL=xobjread -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxnetblast.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxnetblast.so /bin/ln -f .xnetblast.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/read_util.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/table_field.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2 TMPL=id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2/id2__.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/format_guess_ex.cpp:45: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2/id2___.cpp:2: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map_switch.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_switch.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp: In function ‘ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:58:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:74:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:123:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", fields); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libid2.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libid2.so /bin/ln -f .id2.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.id2.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/snp_annot_info.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/snp_annot_info.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_types_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_seq_entry.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function ‘Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:257:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] Uint4 end_value = *((int *) & end_bytes); ^ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp: In member function ‘int ncbi::CAgpRow::FromString(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:303:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line.substr(0, pcomment), "\t", cols); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:316:55: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line.substr(0, pos), "\t", cols); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:321:43: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] else NStr::Tokenize(line, "\t", cols); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp: In member function ‘int ncbi::CAgpRow::ParseGapCols(bool)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:646:80: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(GetLinkageEvidence(), ";", raw_linkage_evidences); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp: In static member function ‘static void ncbi::CAgpErrEx::PrintLine(ncbi::CNcbiOstream&, const string&, int, const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:1218:63: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE posSpace = NStr::Find(line, " ", 0, posComment); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:1220:68: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE posTab = NStr::Find(line, "\t", 0, posComment); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:1224:64: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] posTab = NStr::Find(line, " ", posTab+1, posComment); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/table_field.cpp -o table_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_cvt.cppmake[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o /bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast_unit_test_util.a /bin/ln -f .blast_unit_test_util.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.blast_unit_test_util.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_loc_cvt.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_cvt.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_selector.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o /bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqalign_util.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqalign_util.a /bin/ln -f .seqalign_util.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.seqalign_util.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_descr_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_validate_reader.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blast_app_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blast_app_util.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blast_app_util.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/feat_ci.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/feat_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blasIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_object.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/graph_ci.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/graph_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/aln_reader.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/aln_reader.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_object_index.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_object_index.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/bed_reader.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast_app_util.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast TMPL=xnetblastcli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_ci.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/blastclient_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/blastclient.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_info.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -o seq_loc_cvt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_object.cpp -o annot_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_info.cpp -o tse_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient_.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_info_object.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxnetblastcli.so /bin/ln -f .xnetblastcli.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/cigar.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/cigar.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_info.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services TMPL=blast_services -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp: In member function ‘std::vector > ncbi::CBlastServices::GetDatabaseInfoLegacy(const string&, bool, bool*, std::vector >*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:442:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(dbname, " \n\t", dbs); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp: In member function ‘std::vector > ncbi::CBlastServices::GetDatabaseInfo(const string&, bool, bool*, std::vector >*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:487:56: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(local_db_name, " \n\t", all_db_names); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp: In member function ‘virtual bool ncbi::objects::CFastaReader::ParseGapLine(const TStr&, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp:1279:35: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_base_info.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=NETBLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast_services.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast_services.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast_services.so /bin/ln -f .blast_services.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_info.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_info.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_info.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/data_source.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/priority.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/prefetch_impl.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_impl.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/data_source.cpp -o data_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/priority.cpp -o priority.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_aln_builder.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/featuredump.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/getfeature.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/getfeature.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/prefetch_actions.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_actions.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:48, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/scope.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual bool ncbi::objects::CGFFReader::x_ParseStructuredComment(const TStr&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:408:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "# \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual ncbi::CRef ncbi::objects::CGFFReader::x_ParseFeatureInterval(const TStr&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:479:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", v, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:482:58: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual void ncbi::objects::CGFFReader::x_ParseV3Attributes(ncbi::objects::CGFFReader::SRecord&, const TStrVec&, ncbi::SIZE_TYPE&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:930:53: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v[i], ";", v2, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:938:45: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(values, ",", vals); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/heap_scope.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/scope_impl.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/scope_info.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_handle.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/scope.cpp -o scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/scope_info.cpp -o scope_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buildIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ t+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp -o fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readersIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/microarray_reader.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map_ci.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_ci.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/phrap.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_annot_ci.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_table_ci.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_handle.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_handle.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_handle.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/reader_base.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map.cpp -o seq_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_annot_handle.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_handle.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/align_ci.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/align_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/data_loader.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/handle_range.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp: In function ‘ncbi::CRef ncbi::objects::{anonymous}::GetBestId(const TId&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp:146:29: warning: large integer implicitly truncated to unsigned type [-Woverflow] Uint1 best_weight = UINT_MAX; ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/handle_range_map.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/handle_range_map.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/object_manager.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_vector.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/align_ci.cpp -o align_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/data_loader.cpp -o data_loader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/handle_range.cpp -o handle_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/object_manager.cpp -o object_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_vector_ci.cpp In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_vector_ci.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seqdesc_ci.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seqdesc_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_split_info.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_split_info.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_chunk_info.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_chunk_info.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_ci.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp: In member function ‘virtual bool ncbi::objects::CRepeatMaskerReader::ParseRecord(const string&, ncbi::objects::SRepeatRegion&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp:893:43: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] if ( NStr::Split( line, " \t", values ).size() < MIN_VALUE_COUNT ) { ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_type_index.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_type_index.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_loc_mapper.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_mapper.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/wiggle_reader.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_align_mapper.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_collector.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -o seq_vector_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthreaIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader_factory.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/data_loader_factory.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/mapped_feat.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/mapped_feat.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff3_sofa.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_sofa.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_feat_handle.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_reader.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqres/Seq_graph_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqres/Seq_graph.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_graph_handle.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_graph_handle.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_align_handle.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_align_handle.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_assigner.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/scope_transaction.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gtf_reader.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ d -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-stroIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/edit_commands_impl.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp: In static member function ‘static void ncbi::objects::CGff2Record::TokenizeGFF(std::vector&, const ncbi::CTempStringEx&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp:220:68: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::TSplitFlags, std::vector*, ncbi::CTempString_Storage*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(in_line, "\t", columns, NStr::fSplit_MergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2686:28: note: declared here vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/edit_saver.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/unsupp_editsaver.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/edits_db_saver.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/edits_db_saver.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ng -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -WerIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_finder.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/gc_assembly_parser.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/gc_assembly_parser.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split_parser.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_id_sort.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_id_sort.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp: In member function ‘bool ncbi::objects::CGff2Reader::x_FeatureTrimQualifiers(const ncbi::objects::CGff2Record&, ncbi::CRef)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp:829:38: warning: typedef ‘TAttrs’ locally defined but not used [-Wunused-local-typedefs] typedef CGff2Record::TAttributes TAttrs; ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gvf_reader.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/vcf_reader.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/best_feat_finder.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjmgr.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjmgr.so /bin/ln -f .xobjmgr.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j --jobserver-fds=3,4 all cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util TMPL=util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/weight.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/source_mod_parser.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/source_mod_parser.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/sequence.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/dustmask TMPL=xalgodustmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgodustmask.so /bin/ln -f .xalgodustmask.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta_exception.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_exception.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:55: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_converter.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp: In member function ‘void ncbi::CAgpConverter::LoadChromosomeMap(ncbi::CNcbiIstream&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp:143:44: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(line, " \t", split_line); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /usr/bin/g++ -In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp: In function ‘bool ncbi::objects::feature::sFeatureGetChildrenOfSubtypeFaster(ncbi::objects::CMappedFeat, ncbi::objects::CSeqFeatData::ESubtype, std::vector&, ncbi::objects::feature::CFeatTree&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp:3616:22: warning: unused variable ‘ff’ [-Wunused-variable] const CSeq_feat& ff = mf.GetOriginalFeature(); ^~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp: In function ‘bool ncbi::objects::feature::sFeatureGetChildrenOfSubtype(ncbi::objects::CMappedFeat, ncbi::objects::CSeqFeatData::ESubtype, std::vector&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp:3639:22: warning: unused variable ‘ff’ [-Wunused-variable] const CSeq_feat& ff = mf.GetOriginalFeature(); ^~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp: In member function ‘void ncbi::objects::CUCSCRegionReader::xSmartFieldSplit(std::vector >&, ncbi::CTempString)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp:184:62: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t.-:", fields, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘std::__cxx11::string ncbi::s_SeqDB_TryPaths(const string&, const string&, char, bool, ncbi::CSeqDB_FileExistence&, bool)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:361:79: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blast_paths, s_GetPathSplitter(), roads, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/metareg.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjread.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o message_listener.o line_error.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lcreaders -lxutil -lpub -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjread.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjread.so /bin/ln -f .xobjread.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/segmask TMPL=xalgosegmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/seqtitle.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/segmask/segmask.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/segmask/segmask.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘const string* ncbi::s_CheckUniqueValues(const std::map, std::__cxx11::basic_string >&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2038:37: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v, ":", items); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In member function ‘void ncbi::CSeqDB_IdRemapper::AddMapping(int, int, const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2072:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘void ncbi::s_GetDetails(const string&, std::__cxx11::string&, std::__cxx11::string&, std::__cxx11::string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2248:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgosegmask.so /bin/ln -f .xalgosegmask.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split TMPL=id2_split -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/MolInfo_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/MolInfo.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/seqref.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetFlags(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:787:45: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( clause, ";", kywds ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In function ‘bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:1051:80: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In function ‘std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:1680:61: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:1758:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In function ‘size_t s_TitleEndsInOrganism(std::__cxx11::string&, ncbi::CTempString)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2369:68: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2370:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == idx + 2) { ~~~~^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2440:83: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2625:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/split_blob.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/obj_sniff.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/obj_sniff.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_loc_util.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.oIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘int ncbi::CSeqDBIsam::x_DiffCharLease(const string&, ncbi::CSeqDBMemLease&, const string&, ncbi::CSeqDBIsam::TIndx, Uint4, ncbi::CSeqDBIsam::TIndx, bool, ncbi::CSeqDBLockHold&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:450:9: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] int result(-1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:943:9: warning: variable ‘found_short’ set but not used [-Wunused-but-set-variable] int found_short(-1); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_align_util.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp: In constructor ‘ncbi::objects::CId2ReaderBase::CId2ReaderBase()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:182:68: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(proc_param, ";", proc_list, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/id_range.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/object_splitinfo.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/object_splitinfo.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp: In instantiation of ‘bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp:1803:81: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp:1731:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/asn_sizer.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/annot_piece.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/annot_piece.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp -o objutil.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjutil.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjutil.so /bin/ln -f .xobjutil.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr TMPL=alnmgr -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_builders.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/place_id.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/chunk_info.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/chunk_info.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader.a /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader.so /bin/ln -f .ncbi_xreader-static.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader-static.dep /bin/ln -f .ncbi_xreader.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup TMPL=cleanup -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ in/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqdb.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqdb.so /bin/ln -f .seqdb.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/size.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j --jobserver-fds=3,4 all 0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2_split.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libid2_split.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libid2_split.so /bin/ln -f .id2_split.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_converters.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp: In static member function ‘static bool ncbi::objects::CCleanup::IsGeneXrefUnnecessary(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const ncbi::objects::CGene_ref&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:686:84: warning: ‘ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)’ is deprecated [-Wdeprecated-declarations] sequence::Compare(g->second->GetLocation(), gene->GetLocation(), &scope) == sequence::eSame) { ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:52:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:59: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘ncbi::SIZE_TYPE ncbi::objects::s_TitleEndsInOrganism(const string&, const string&, ncbi::SIZE_TYPE*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:1803:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] answer = NStr::FindNoCase(sTitle, sPattern, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘void ncbi::objects::s_RemoveOrgFromEndOfProtein(ncbi::objects::CBioseq&, std::__cxx11::string)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:1857:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp: In function ‘void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef ‘TAlnRngColl’ locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp: In function ‘const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] unsigned long tmp; ^~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_seqid.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup_utils.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function ‘std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqmasks_io.so /bin/ln -f .seqmasks_io.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/biblio/biblio_macros.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/misc/sequence_macros.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/dbindex.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::GBblockBC(ncbi::objects::CGB_block&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:1099:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*it, ";", tokens); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_ExpandThisQual(ncbi::objects::CSeq_feat_Base::TQual&, std::vector >::iterator&, ncbi::objects::CSeq_feat_Base::TQual&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:4154:45: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(valueList, ",", newValues); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/cache/reader_In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cache.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_TokenizeTRnaString(const string&, std::__cxx11::list >&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:4604:86: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( tRNA_string_copy, " \t\n\v\f\r", tRNA_tokens, NStr::eMergeDelims ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_CleanupOrgModNoteEC(ncbi::objects::COrg_ref&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5268:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] org.IsSetTaxname() && NStr::Equal(org.GetTaxname(), (*it)->GetSubname()))) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_SplitDbtag(ncbi::objects::CDbtag&, std::vector >&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5788:54: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( dbt.GetTag().GetStr(), ":", tags ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_SeqFeatTRNABC(ncbi::objects::CSeq_feat&, ncbi::objects::CTrna_ext&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5855:19: warning: unused variable ‘comment’ [-Wunused-variable] const string &comment = ( FIELD_IS_SET(feat, Comment) ? GET_FIELD(feat, Comment) : kEmptyStr ); ^~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_ParsePCRComponent(std::vector >&, const string*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5891:59: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( component_copy, string(","), out_list ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_ParsePCRColonString(std::vector >&, const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:6005:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( str, ":", out_list ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::Except_textBC(std::__cxx11::string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:7099:49: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize (except_text, ",", exceptions); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘bool ncbi::objects::s_SplitGeneSyn(const string&, std::vector >&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:7346:53: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( syn, ",", pieces_split_by_comma ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:7351:77: warning: ‘static std::vector >& ncbi::NStr::TokenizePattern(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::TokenizePattern( *piece_iter, "; ", pieces_split_by_semicolon ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2705:21: note: declared here vector& TokenizePattern(const CTempString str, ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘bool ncbi::objects::HasAuthor(const ncbi::objects::CPubdesc&, bool)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:11133:10: warning: unused variable ‘is_patent’ [-Wunused-variable] bool is_patent = false; ^~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In static member function ‘static bool ncbi::objects::CNewCleanup_imp::ShouldRemoveAnnot(const ncbi::objects::CSeq_annot&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:11412:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (!s_RetainEmptyAnnot(annot) && ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ (annot.IsFtable() && annot.GetData().GetFtable().empty()) || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp: In member function ‘ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp:1467:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ~~~~^~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/obIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgoblastdbindex.so /bin/ln -f .xalgoblastdbindex.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function ‘static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ match1->m_Score > match2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp: In member function ‘void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand1 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 != eNa_strand_minus)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_cache.a /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_cache.so /bin/ln -f .ncbi_xreader_cache-static.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/ln -f .ncbi_xreader_cache.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id1.a /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id1.so /bin/ln -f .ncbi_xreader_id1-static.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/ln -f .ncbi_xreader_id1.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_CreateDenseg()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: ‘width2’ may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmix.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id2.a /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id2.so /bin/ln -f .ncbi_xreader_id2-static.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/ln -f .ncbi_xreader_id2.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastdb_format.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastdb_format.so /bin/ln -f .blastdb_format.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp: In member function ‘void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /bin/rm -f libxcleanup.so .libxcleanup.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcleanup.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjutil -lvalid -lsubmit -ltaxon3 -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxcleanup.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxcleanup.so /bin/ln -f .xcleanup.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xcleanup.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_blastdb.so /bin/ln -f .ncbi_xloader_blastdb.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp: In static member function ‘static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_Score > seq2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function ‘void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:79:18: warning: variable ‘wholeL’ set but not used [-Wunused-but-set-variable] int wholeL(0); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o makembindex /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f makembindex /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/makembindex make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ jtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSeqId::test_method()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:150:47: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(string(buffer), " ", tokens); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In constructor ‘ncbi::CWriteDB_File::CWriteDB_File(const string&, const string&, int, Uint8, bool)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:120:24: warning: unused variable ‘MAX_FILE_SIZE’ [-Wunused-variable] static const Uint8 MAX_FILE_SIZE = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In member function ‘int ncbi::CWriteDB_File::Write(const ncbi::CTempString&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:152:24: warning: unused variable ‘MAX_OFFSET’ [-Wunused-variable] static const Uint8 MAX_OFFSET = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seq_writer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o blastdb_format_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o gene_info_reader /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gene_info_reader /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/general__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alntext.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o seqdb_demo /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqdb_demo /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/score_builder_base.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_filter_program_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_filter_program.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalnmgr.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalnmgr.so /bin/ln -f .xalnmgr.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o seqdb_perf /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqdb_perf /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask TMPL=xalgowinmask -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o seqdb_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqdb_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_score.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function ‘bool ncbi::objects::CGBDataLoader::x_CreateReaders(const string&, const TParamTree*, ncbi::objects::CGBLoaderParams::EPreopenConnection)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:636:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, ";", str_list, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function ‘void ncbi::objects::CGBDataLoader::x_CreateWriters(const string&, const TParamTree*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:660:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, ";", str_list, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_services_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_services_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/seqloc__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j --jobserver-fds=3,4 all LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libwritedb.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libwritedb.so /bin/ln -f .writedb.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.writedb.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blaIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_genbank.a /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_genbank.so /bin/ln -f .ncbi_xloader_genbank-static.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/ln -f .ncbi_xloader_genbank.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format TMPL=xformat -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/accession_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/basecount_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/comment_item.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Delta_ext_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Delta_ext.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/contig_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/simple TMPL=xobjsimple -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/date_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/simple/simple_om.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ st+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTmake[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjsimple.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjsimple.so /bin/ln -f .xobjsimple.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/dbsource_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/defline_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/defline_item.cpp -o defline_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:45: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_item.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_SplitCommaSeparatedStringInParens(std::vector >&, const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:873:120: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( string_to_split.substr( 1, string_to_split.length() - amount_to_chop_off_end - 1), ",", output_vec ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:1391:49: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( raw_exception, ",", exceptions ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In function ‘const string& ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:1788:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_ParseParentQual(const ncbi::objects::CGb_qual&, std::__cxx11::list >&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:3346:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(val, "(,)", vals); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddRptUnitQual(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:3777:39: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(tmp, ",", units); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/dustmasker TMPL=dustmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/ctrl_items.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/dustmasker/main.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor ‘ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: ‘unit_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ~^~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqblock/PIR_block_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqblock/PIR_block.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ IFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp: In member function ‘void ncbi::objects::CKeywordsItem::x_AddKeyword(const string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp:378:38: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( keyword, ";", kywds ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o dustmasker /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f dustmasker /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/locus_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format TMPL=align_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp: In member function ‘void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static void ncbi::align_format::CAlignFormatUtil::PrintTildeSepLines(std::__cxx11::string, size_t, ncbi::CNcbiOstream&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:208:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, "~", split_line); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/align_format/align_format_util.hpp:32, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static std::__cxx11::string ncbi::align_format::CAlignFormatUtil::MapTemplate(std::__cxx11::string, std::__cxx11::string, Int8)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:2992:70: warning: ‘static std::__cxx11::string ncbi::NStr::IntToString(long int, ncbi::NStr::TNumToStringFlags, int)’ is deprecated [-Wdeprecated-declarations] NStr::Replace(inpString,tmplParam,NStr::IntToString(templParamVal),outString); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/align_format/align_format_util.hpp:32, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5063:8: note: declared here string NStr::IntToString(long value, ^~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp: In static member function ‘static void ncbi::objects::CReferenceItem::ChangeMedlineAuthorsToISO(ncbi::CRef)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp:1300:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(author_name, " ", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp: In member function ‘virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp:37:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/segment_item.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ bi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp -o primary_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp -o reference_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/segment_item.cpp -o segment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/formake[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o writedb_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f writedb_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/win_mask_config.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/sequence_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showdefline.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp: In static member function ‘static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(type == eAny || type >= eGenerateMasksWithDuster) ^~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ arg_desc.AddDefaultKey( "dust_level", "dust_level", ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqblock/GB_block_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqblock/GB_block.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/align_format/showalign.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp: In member function ‘void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat.cpp:32: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp: In function ‘void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp:4387:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp:4387:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/version_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ PIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgowinmask.so /bin/ln -f .xalgowinmask.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api TMPL=xblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/tabular.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/wgs_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/tsa_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Int_fuzz_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Int_fuzz.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_seqloc.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_cxx.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function ‘bool ncbi::blast::CBlastOptionsLocal::Validate() const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:383:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:391:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return true; ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/qualifiers.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker TMPL=winmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_app.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/align_format/vectorscreen.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/vectorscreen.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_setup_cxx.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/context.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/align_format/seqalignfilter.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/seqalignfilter.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqdb -lblastdb -lseqmasks_io -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o windowmasker /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f windowmasker /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/windowmasker make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:98:36: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:104:37: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_Omake[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/taxFormat.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp: At global scope: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp:747:13: warning: ‘bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)’ defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blastx_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/tblastx_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/tblastn_options.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ GEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -std=gnu++11 In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/aln_printer.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ mat/sequence_item.cpp -o sequence_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp -o source_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/version_item.cpp -o version_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/context.cpp -o context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp -o gather_items.o /usr/bin/g++ -std=gnu++In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/pssm_engine.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/embl_gather.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ FFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -ltaxon1 -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libalign_format.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libalign_format.so /bin/ln -f .align_format.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_blast.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_gather.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_blast.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp: In member function ‘void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:173:10: warning: unused variable ‘nearFeatsSuppress’ [-Wunused-variable] bool nearFeatsSuppress = false; ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:176:10: warning: variable ‘isNgNtNwNz’ set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:177:10: warning: variable ‘isGED’ set but not used [-Wunused-but-set-variable] bool isGED = false; ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:178:10: warning: variable ‘isTPA’ set but not used [-Wunused-but-set-variable] bool isTPA = false; ^~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/biblio/Cit_book_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/biblio/Cit_book.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/item_formatter.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/builIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/embl_formatter.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcliIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/format_item_ostream.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/format_item_ostream.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o align_format_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f align_format_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/tempstr.hpp:38:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGapItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::COriginItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CContigItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CPrimaryItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CTSAItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CWGSItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDBSourceItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSequenceItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CBaseCountItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatureItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceFeatureItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatHeaderItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CCommentItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CReferenceItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSegmentItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CKeywordsItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CHtmlAnchorItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGenomeProjectItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CVersionItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CAccessionItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDeflineItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CLocusItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CEndSectionItem]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/item_ostream.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /usr/binIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/ostream_text_ostream.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/ostream_text_ostream.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/origin_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/ftable_gather.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/bl2seq.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/ftable_formatter.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/accession_item.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ d/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp: In function ‘void ncbi::objects::s_GBSeqStringCleanup(std::__cxx11::string&, bool)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:82:36: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, " \n\r\t\b", l); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘virtual void ncbi::objects::CGBSeqFormatter::FormatGenomeProject(const ncbi::objects::CGenomeProjectItem&, ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:358:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(second, ",", ids); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘void ncbi::objects::CGBSeqFormatter::x_StrOStreamToTextOStream(ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:685:70: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split((string)CNcbiOstrstreamToString(m_StrStream), "\n", l); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp: In function ‘ncbi::objects::CFlatFileConfig::TGenbankBlocks ncbi::objects::{anonymous}::x_GetGenbankBlocks(const ncbi::CArgs&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp:832:52: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blocks_arg, ",", vecOfBlockNames); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/flat_file_config.hpp:34, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/alignment_item.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psibl2seq.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psibl2seq.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_db_adapter.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gap_item.cpp -o gap_item.o /usr/bIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/gap_item.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gap_item.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_project_item.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp: In member function ‘void ncbi::blast::CPsiBlastImpl::x_ExtractQueryFromPssm()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp:122:23: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] m_Query.Reset(new CObjMgrFree_QueryFactory(query_bioseq)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp:45:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/cigar_formatter.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/sam_formatter.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/cigar_formatter.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_iteration.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psi_pssm_input.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-yIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/gather_iter.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_iter.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function ‘void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp:380:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/html_anchor_item.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function ‘void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef, const ncbi::blast::CBlastOptions&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:474:41: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef seq_fetcher(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:47:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux_priv.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux_priv.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/gene_finder.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gene_finder.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/OrgMod_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/OrgMod.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/items/flat_qual_slots.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_qual_slots.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/dust_filter.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/dust_filter.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rps_aux.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/search_strategy.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/nIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/setup_factory.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ in/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /binIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/prelim_stage.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /rm -f libxformat.so .libxformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxformat.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxformat.so /bin/ln -f .xformat.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xformat.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/uniform_search.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/traceback_stage.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/scoremat/Pssm_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/scoremat/Pssm.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_results.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp: In member function ‘virtual ncbi::CRef ncbi::blast::CLocalPssmSearch::Run()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp:171:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp:55:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/seqalign__.hpp:1, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_search.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp -o local_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/query_data.cpp -o query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -DIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/query_data.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/objmgr_query_data.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_dbindex.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ _THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthreIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_cxx.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_aux_priv.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_blk.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/subj_ranges_set.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/winmask_filter.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/winmask_filter.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpsblast_local.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/cdd_pssm_input.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp: In member function ‘void ncbi::blast::CSeedTop::x_ParsePattern()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp:66:56: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(NStr::ToUpper(m_Pattern), "-", units); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seedtop.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ ad -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/nIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/deltablast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast_options.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqmasks_io -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxconnect -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxblast.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxblast.so /bin/ln -f .xblast.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput TMPL=blastinput -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format TMPL=xblastformat -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast TMPL=igblast -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastfmtutil.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp: In constructor ‘ncbi::blast::CIgAnnotationInfo::CIgAnnotationInfo(ncbi::CConstRef&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:96:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:120:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp: In member function ‘void ncbi::blast::CIgBlast::x_ScreenV(ncbi::CRef&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:142:73: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((*it)->GetAlignLength() - (*it)->GetTotalGapCount(0) < m_IgOptions->m_MinVLength){ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aalookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aalookup_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f aalookup_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/aalookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:506:86: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbimisc.hpp:1193:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::__cxx11::string&, std::__cxx11::string&, bool, bool)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:789:89: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbimisc.hpp:1193:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libigblast.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libigblast.so /bin/ln -f .igblast.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.igblast.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_args.cpp:45: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml2_format.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aascan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aascan_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f aascan_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/aascan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastp_args.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:52:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:54:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp: In member function ‘void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:507:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ~~~~~~^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function ‘void blastengine::testBlastpPrelimSearch::test_method()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:441:33: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastn_args.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdiag_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastdiag_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdiag_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp:25: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastengine_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastengine_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastengine_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastengine_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastx_args.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp:41:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastn_args.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastextend_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastextend_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastextend_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastextend_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/build_archive.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastx_args.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/vecscreen_run.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/psiblast_args.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blasthits_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blasthits_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blasthits_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blasthits_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/sam_formatter.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/sam.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::RemoteOptionsTest::test_method()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:60: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:145:9: note: in definition of macro ‘BOOST_CHECK_NO_THROW_IMPL’ S; \ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testRemoteFilterString::test_method()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1328:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1332:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1337:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1339:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1343:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1345:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1349:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1351:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1355:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1357:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1324:50: warning: typedef ‘TBlast4Opts’ locally defined but not used [-Wunused-local-typedefs] typedef ncbi::objects::CBlast4_parameters TBlast4Opts; ^~~~~~~~~~~ In file included from /usr/include/boost/test/test_tools.hpp:45:0, from /usr/include/boost/test/unit_test.hpp:18, from /usr/include/boost/test/auto_unit_test.hpp:16, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:66, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testOptionsDeepCopy::test_method()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1396:57: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastfilter_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastfilter_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastfilter_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp: In member function ‘void ncbi::objects::CBlast_SAM_Formatter::x_ProcessCustomSpec(const string&, const ncbi::objects::CSAM_Formatter::SProgramInfo&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp:88:48: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(custom_spec, " ", format_tokens); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/format/sam_formatter.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/format/sam.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ SET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp -o sam.o /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblastformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxformat -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lalign_format -lblastxml -lblastxml2 -lxhtml -lxcgi -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxblastformat.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libxblastformat.so /bin/ln -f .xblastformat.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gapinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxncbi -ldl -lm -lpthread -o gapinfo_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/gapinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j --jobserver-fds=3,4 all _SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-formaIn file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastn_args.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastoptions_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastoptions_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastoptions_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o gencode_singleton_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastp_args.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_besthit_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/hspfilter_besthit_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_culling_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/hspfilter_culling_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/deltablast_args.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastsetup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastsetup_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastsetup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o hspstream_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f hspstream_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/hspstream_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ t-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastinput.so /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastinput.so /bin/ln -f .blastinput.dep /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o msa2pssm_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/msa2pssm_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie linkhsp_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o linkhsp_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntlookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o ntlookup_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/ntlookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie phiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o phiblast_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f phiblast_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntscan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntscan_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f ntscan_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/ntscan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie optionshandle_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o optionshandle_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/optionshandle_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o prelimsearch_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/prelimsearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_iteration_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/psiblast_iteration_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o psibl2seq_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/psibl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psiblast_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/psiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmenginefreqratios_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/pssmenginefreqratios_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmcreate_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/pssmcreate_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function ‘static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq(ncbi::TGi)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:495:47: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function ‘static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set(const std::vector&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:509:47: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function ‘void QueryData::ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths::test_method()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:580:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie querydata_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o querydata_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f querydata_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/querydata_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie queryinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o queryinfo_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/queryinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Std_seg_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Std_seg.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie redoalignment_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o redoalignment_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/redoalignment_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/search_strategy.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie remote_blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o remote_blast_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/remote_blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rps_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rps_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f rps_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/rps_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie scoreblk_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o scoreblk_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/scoreblk_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie search_strategy_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o search_strategy_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/search_strategy_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqinfosrc_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp: In instantiation of ‘void CSplitQueryTestFixture::x_ParseConfigLine(const string&, std::vector&) [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:685:52: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:916:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(input, ",", tokens); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp: In instantiation of ‘void CSplitQueryTestFixture::x_ParseConfigLine(const string&, std::vector&) [with T = int; std::__cxx11::string = std::__cxx11::basic_string]’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:903:13: required from ‘void CSplitQueryTestFixture::x_ReadVectorOfVectorsForTest(const string&, const char*, std::vector >&) [with T = int; std::__cxx11::string = std::__cxx11::basic_string]’ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:405:75: required from here /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:916:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(input, ",", tokens); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie setupfactory_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o setupfactory_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/setupfactory_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie stat_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o stat_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f stat_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/stat_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie split_query_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o split_query_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f split_query_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/split_query_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o subj_ranges_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/subj_ranges_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqsrc_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/seqsrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie version_reference_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o version_reference_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f version_reference_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/version_reference_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie traceback_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o traceback_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f traceback_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/traceback_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o tracebacksearch_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/tracebacksearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie uniform_search_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o uniform_search_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/uniform_search_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function ‘void blast_archive::BuildArchiveWithDB::test_method()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:79:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:48:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function ‘void blast_archive::BuildArchiveWithBl2seq::test_method()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:118:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:48:0: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blast_formatter -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blast_formatter.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blastn_app.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include -I../ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bdbloader_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blastp -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blastp_app.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blast_formatter /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_formatter /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blastx -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastn /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=deltablast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blastx_app.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o blast_format_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_format_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=psiblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/deltablast.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/deltablast_app.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/psiblast_app.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastp /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastp /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastp make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=rpsblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/rpsblast_app.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastx /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastx /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=rpstblastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/rpstblastn_app.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o deltablast /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f deltablast /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=seedtop -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o psiblast /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psiblast /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/psiblast make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=tblastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/seedtop_app.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o rpsblast /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f rpsblast /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=tblastx -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/tblastn_app.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/tblastx_app.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o rpstblastn /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f rpstblastn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdb_aliastool.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o tblastx /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f tblastx /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdbcheck -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seedtop_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o seedtop /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seedtop /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/seedtop make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdbcmd -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:39: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o tblastn /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f tblastn /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdbcp -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp:43: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcp.cpp:33: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘int CAliasTest::DoTest(const string&, TSeen&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:720:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*line, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘virtual bool CDbTest::Test(CTestActionList&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:941:54: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(m_Db, " ", dbs, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp: In member function ‘int CBlastDBCmdApp::x_ProcessBatchEntry(const ncbi::CArgs&, ncbi::CSeqFormatter&)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp:446:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(queries.empty()) ^~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp:449:13: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ TSeqRange seq_range(TSeqRange::GetEmpty()); ^~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdb_aliastool /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdb_aliastool /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=convert2blastmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/convert2blastmask.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcp /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdbcp /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=makeblastdb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:42: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcheck /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdbcheck /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/masked_range_set.hpp:33, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/masked_range_set.cpp:31: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcmd /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdbcmd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=makeprofiledb -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp: In member function ‘void CMakeBlastDBApp::x_ProcessMaskData()’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:820:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:845:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:858:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:41: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeprofiledb.cpp:40: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqmasks_io -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o convert2blastmask /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f convert2blastmask /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/segmasker TMPL=segmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/segmasker/segmasker.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjsimple -lseqmasks_io -lxalgosegmask -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o segmasker /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f segmasker /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/segmasker make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o makeblastdb /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f makeblastdb /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/makeblastdb make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:35: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o makeprofiledb /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f makeprofiledb /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:37: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:38: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o delta_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f delta_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/delta_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bl2seq_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/bl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastinput_unit_test /bin/bash /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastinput_unit_test /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build' make[2]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build' make[1]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' dh_auto_test /usr/bin/make -j1 check VERBOSE=1 make[2]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++' if test -s ""; then \ cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build' ====================================================================== make[4]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress' /bin/echo 'Warning: non-existent sub-project "diff"' Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make -C services -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "ext"' Warning: non-existent sub-project "ext" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/html' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system' /usr/bin/make -C helpers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' /usr/bin/make -f /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /bin/echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -C blastxml2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/ncbimime' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -C gbproj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbproj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbproj' /usr/bin/make -C trackmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/trackmgr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/trackmgr' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/access' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/macro' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/macro' /usr/bin/make -C genesbyloc -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genesbyloc' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genesbyloc' /usr/bin/make -C coords -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/coords' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects/coords' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' /usr/bin/make -C edit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" /bin/echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /bin/echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" /bin/echo 'Warning: non-existent sub-project "uudutil"' Warning: non-existent sub-project "uudutil" /bin/echo 'Warning: non-existent sub-project "variation"' Warning: non-existent sub-project "variation" /bin/echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test TEST -- algo/blast/unit_tests/api/aalookup_unit_test TEST -- algo/blast/unit_tests/api/seqsrc_unit_test TEST -- algo/blast/unit_tests/api/delta_unit_test TEST -- algo/blast/unit_tests/api/ntlookup_unit_test TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test TEST -- algo/blast/unit_tests/api/setupfactory_unit_test TEST -- algo/blast/unit_tests/api/search_strategy_unit_test TEST -- algo/blast/unit_tests/api/redoalignment_unit_test TEST -- algo/blast/unit_tests/api/queryinfo_unit_test TEST -- algo/blast/unit_tests/api/querydata_unit_test TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test TEST -- algo/blast/unit_tests/api/blastsetup_unit_test TEST -- algo/blast/unit_tests/api/blastextend_unit_test TEST -- algo/blast/unit_tests/api/blastdiag_unit_test TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test TEST -- algo/blast/unit_tests/api/optionshandle_unit_test TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test TEST -- algo/blast/unit_tests/api/traceback_unit_test TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test TEST -- algo/blast/unit_tests/api/psiblast_unit_test TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test TEST -- algo/blast/unit_tests/api/phiblast_unit_test TEST -- algo/blast/unit_tests/api/split_query_unit_test TEST -- algo/blast/unit_tests/api/scoreblk_unit_test TEST -- algo/blast/unit_tests/api/hspstream_unit_test TEST -- algo/blast/unit_tests/api/rps_unit_test TEST -- algo/blast/unit_tests/api/gapinfo_unit_test TEST -- algo/blast/unit_tests/api/blasthits_unit_test TEST -- algo/blast/unit_tests/api/linkhsp_unit_test TEST -- algo/blast/unit_tests/api/blastengine_unit_test TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test TEST -- algo/blast/unit_tests/api/version_reference_unit_test TEST -- algo/blast/unit_tests/api/ntscan_unit_test TEST -- algo/blast/unit_tests/api/aascan_unit_test TEST -- algo/blast/unit_tests/api/remote_blast_unit_test TEST -- algo/blast/unit_tests/api/uniform_search_unit_test TEST -- algo/blast/unit_tests/api/blastfilter_unit_test TEST -- algo/blast/unit_tests/api/blastoptions_unit_test TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test TEST -- algo/blast/unit_tests/api/bl2seq_unit_test TEST -- algo/blast/unit_tests/api/stat_unit_test make[8]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /bin/echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" /bin/echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" /bin/echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" /bin/echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" /bin/echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" /bin/echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" /bin/echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" /bin/echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" /bin/echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" /bin/echo 'Warning: non-existent sub-project "primer"' Warning: non-existent sub-project "primer" /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo' /bin/echo 'Warning: non-existent sub-project "misc"' Warning: non-existent sub-project "misc" /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" /bin/echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" /bin/echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" /bin/echo 'Warning: non-existent sub-project "asn_cleanup"' Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /bin/echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" /bin/echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" /bin/echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" /bin/echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" /bin/echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" /bin/echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /bin/echo 'Warning: non-existent sub-project "vecscreen"' Warning: non-existent sub-project "vecscreen" /bin/echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" /bin/echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" /bin/echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" /bin/echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" /bin/echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" /bin/echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" /bin/echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" /bin/echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" /bin/echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" /bin/echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" /bin/echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" /bin/echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" /bin/echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" /bin/echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" /bin/echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" /bin/echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" /bin/echo 'Warning: non-existent sub-project "lds2_indexer"' Warning: non-existent sub-project "lds2_indexer" /bin/echo 'Warning: non-existent sub-project "discrep_report"' Warning: non-existent sub-project "discrep_report" /bin/echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" /bin/echo 'Warning: non-existent sub-project "biosample_chk"' Warning: non-existent sub-project "biosample_chk" /bin/echo 'Warning: non-existent sub-project "gap_stats"' Warning: non-existent sub-project "gap_stats" /bin/echo 'Warning: non-existent sub-project "table2asn"' Warning: non-existent sub-project "table2asn" /bin/echo 'Warning: non-existent sub-project "srcchk"' Warning: non-existent sub-project "srcchk" /bin/echo 'Warning: non-existent sub-project "tableval"' Warning: non-existent sub-project "tableval" /bin/echo 'Warning: non-existent sub-project "ncbi_encrypt"' Warning: non-existent sub-project "ncbi_encrypt" /bin/echo 'Warning: non-existent sub-project "ssub_fork"' Warning: non-existent sub-project "ssub_fork" /bin/echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" /bin/echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" /bin/echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" /bin/echo 'Warning: non-existent sub-project "rmblastn"' Warning: non-existent sub-project "rmblastn" /bin/echo 'Warning: non-existent sub-project "dblb"' Warning: non-existent sub-project "dblb" /bin/echo 'Warning: non-existent sub-project "tls"' Warning: non-existent sub-project "tls" make[5]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" /bin/echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/align_format/unit_test/align_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/blastinput/unit_test/blastinput_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blast_format/blast_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blastdb/bdbloader_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/aalookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqsrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/delta_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntlookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqinfosrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/setupfactory_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/search_strategy_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/redoalignment_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/queryinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/querydata_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastsetup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastextend_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmcreate_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_iteration_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_culling_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/optionshandle_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/msa2pssm_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/tracebacksearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/traceback_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psibl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/prelimsearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/phiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/split_query_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/scoreblk_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspstream_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/rps_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gapinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blasthits_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/linkhsp_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastengine_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/subj_ranges_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/version_reference_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntscan_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/remote_blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/uniform_search_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastfilter_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastoptions_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gencode_singleton_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/bl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/stat_unit_test (unmet CHECK_REQUIRES) Done. OK -- [serial/datatool] datatool.sh (real 0.18, user 0.11, sys 0.06) SKP -- [serial/datatool] datatool_xml.sh DIS -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.01, user 0.00, sys 0.00) ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.19, user 0.04, sys 0.05) Succeeded : 2 Timeout : 0 Failed : 1 Absent : 2 /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.meta_r:46: recipe for target 'check_r.real' failed make[3]: *** [check_r.real] Error 7 make[3]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build' Makefile:33: recipe for target 'check' failed make[2]: *** [check] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++' dh_auto_test: /usr/bin/make -j1 check VERBOSE=1 returned exit code 2 debian/rules:60: recipe for target 'override_dh_auto_test' failed make[1]: [override_dh_auto_test] Error 2 (ignored) c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.19, user 0.04, sys 0.05) ====================================================================== aascan_unit_test ====================================================================== 18371/000/0000/PB 9C6347C37A620E61 0001/0001 2016-08-06T17:39:50.138805 z13-013 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test Running 4 test cases... 18371/000/0000/PE 9C6347C37A620E61 0002/0002 2016-08-06T17:39:50.140457 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test extra ncbi_phid=9C6347C37A620E61000000000000224A 18371/000/0000/PE 9C6347C37A620E61 0003/0003 2016-08-06T17:39:50.227578 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#1000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0004/0004 2016-08-06T17:39:50.227607 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0005/0005 2016-08-06T17:39:50.227627 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0006/0006 2016-08-06T17:39:50.227642 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0008/0008 2016-08-06T17:39:50.229070 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#2000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0009/0009 2016-08-06T17:39:50.229085 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0010/0010 2016-08-06T17:39:50.229101 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0011/0011 2016-08-06T17:39:50.229112 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0013/0013 2016-08-06T17:39:51.230501 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#3000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0014/0014 2016-08-06T17:39:51.230522 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0015/0015 2016-08-06T17:39:51.230540 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0016/0016 2016-08-06T17:39:51.230552 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0018/0018 2016-08-06T17:39:53.732638 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#4000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0019/0019 2016-08-06T17:39:53.732659 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0020/0020 2016-08-06T17:39:53.732675 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0021/0021 2016-08-06T17:39:53.732687 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0023/0023 2016-08-06T17:39:58.484224 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#5000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0024/0024 2016-08-06T17:39:58.484246 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0025/0025 2016-08-06T17:39:58.484264 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0026/0026 2016-08-06T17:39:58.484276 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(250): last checkpoint: "ScanOffsetTest" fixture entry. 18371/000/0000/PE 9C6347C37A620E61 0030/0030 2016-08-06T17:39:58.485893 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#6000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0031/0031 2016-08-06T17:39:58.485908 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0032/0032 2016-08-06T17:39:58.485925 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0033/0033 2016-08-06T17:39:58.485940 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0035/0035 2016-08-06T17:39:58.487166 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#7000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0036/0036 2016-08-06T17:39:58.487181 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0037/0037 2016-08-06T17:39:58.487197 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0038/0038 2016-08-06T17:39:58.487208 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0040/0040 2016-08-06T17:39:59.488652 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#8000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0041/0041 2016-08-06T17:39:59.488672 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0042/0042 2016-08-06T17:39:59.488688 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0043/0043 2016-08-06T17:39:59.488700 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0045/0045 2016-08-06T17:40:01.990149 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#9000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0046/0046 2016-08-06T17:40:01.990179 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0047/0047 2016-08-06T17:40:01.990198 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0048/0048 2016-08-06T17:40:01.990212 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0050/0050 2016-08-06T17:40:06.741781 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#10000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0051/0051 2016-08-06T17:40:06.741815 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0052/0052 2016-08-06T17:40:06.741833 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0053/0053 2016-08-06T17:40:06.741847 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanMaxHitsTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(330): last checkpoint: "ScanMaxHitsTest" fixture entry. 18371/000/0000/PE 9C6347C37A620E61 0057/0057 2016-08-06T17:40:06.743438 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#11000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0058/0058 2016-08-06T17:40:06.743454 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0059/0059 2016-08-06T17:40:06.743470 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0060/0060 2016-08-06T17:40:06.743482 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0062/0062 2016-08-06T17:40:06.744609 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#12000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0063/0063 2016-08-06T17:40:06.744624 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0064/0064 2016-08-06T17:40:06.744639 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0065/0065 2016-08-06T17:40:06.744654 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0067/0067 2016-08-06T17:40:07.746118 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#13000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0068/0068 2016-08-06T17:40:07.746134 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0069/0069 2016-08-06T17:40:07.746150 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0070/0070 2016-08-06T17:40:07.746162 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0072/0072 2016-08-06T17:40:10.247765 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#14000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0073/0073 2016-08-06T17:40:10.247834 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0074/0074 2016-08-06T17:40:10.248241 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0075/0075 2016-08-06T17:40:10.248253 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0077/0077 2016-08-06T17:40:14.999900 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#15000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0078/0078 2016-08-06T17:40:14.999919 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0079/0079 2016-08-06T17:40:14.999935 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0080/0080 2016-08-06T17:40:14.999948 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/SkipMaskedRanges": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(383): last checkpoint: "SkipMaskedRanges" fixture entry. 18371/000/0000/PE 9C6347C37A620E61 0084/0084 2016-08-06T17:40:15.001532 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#16000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0085/0085 2016-08-06T17:40:15.001548 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0086/0086 2016-08-06T17:40:15.001563 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0087/0087 2016-08-06T17:40:15.001575 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0089/0089 2016-08-06T17:40:15.002760 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#17000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0090/0090 2016-08-06T17:40:15.002774 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0091/0091 2016-08-06T17:40:15.002790 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0092/0092 2016-08-06T17:40:15.002802 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0094/0094 2016-08-06T17:40:16.004226 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#18000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0095/0095 2016-08-06T17:40:16.004253 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0096/0096 2016-08-06T17:40:16.004270 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0097/0097 2016-08-06T17:40:16.004284 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0099/0099 2016-08-06T17:40:18.505690 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#19000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0100/0100 2016-08-06T17:40:18.505710 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0101/0101 2016-08-06T17:40:18.505726 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0102/0102 2016-08-06T17:40:18.505739 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 18371/000/0000/PE 9C6347C37A620E61 0104/0104 2016-08-06T17:40:23.257216 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#20000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 18371/000/0000/PE 9C6347C37A620E61 0105/0105 2016-08-06T17:40:23.257237 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=z13-013.buildd(10.189.64.113)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 18371/000/0000/PE 9C6347C37A620E61 0106/0106 2016-08-06T17:40:23.257253 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 18371/000/0000/PE 9C6347C37A620E61 0107/0107 2016-08-06T17:40:23.257265 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanCheckScores": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(433): last checkpoint: "ScanCheckScores" fixture entry. Executed 4 test cases. *** 4 failures are detected in the test module "Master Test Suite" 18371/000/0000/PE 9C6347C37A620E61 0111/0111 2016-08-06T17:40:23.266533 z13-013 UNK_CLIENT 9C6347C37A620E61_0000SID aascan_unit_test stop 201 33.170706033 Command exited with non-zero status 201 real 33.19 user 0.04 sys 0.05 Start time : 08/06/2016 17:39:50 Stop time : 08/06/2016 17:40:23 Load averages: 1.90 3.10 2.06 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 201 make[1]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' fakeroot debian/rules binary-arch dh binary-arch -Dc++ --with autotools_dev dh_testroot -a -O-Dc\+\+ dh_prep -a -O-Dc\+\+ dh_installdirs -a -O-Dc\+\+ debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' # cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' debian/rules override_dh_install-arch make[1]: Entering directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool debian/ncbi-blast+/usr/bin/run_with_lock \ debian/ncbi-blast+/usr/bin/project_tree_builder for x in debian/ncbi-blast+/usr/bin/*; do \ LD_LIBRARY_PATH=c++/BUILD/lib ldd $x; \ done 2>/dev/null | awk '/BUILD/ { print $3 }' | sort -u | \ xargs cp -v -t debian/ncbi-blast+/usr/lib/ncbi-blast+ 'c++/BUILD/lib/libalign_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libalign_format.so' 'c++/BUILD/lib/libbiblio.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libbiblio.so' 'c++/BUILD/lib/libblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast.so' 'c++/BUILD/lib/libblast_services.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast_services.so' 'c++/BUILD/lib/libblastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb.so' 'c++/BUILD/lib/libblastdb_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb_format.so' 'c++/BUILD/lib/libblastinput.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastinput.so' 'c++/BUILD/lib/libblastxml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml.so' 'c++/BUILD/lib/libblastxml2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml2.so' 'c++/BUILD/lib/libcomposition_adjustment.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcomposition_adjustment.so' 'c++/BUILD/lib/libcreaders.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcreaders.so' 'c++/BUILD/lib/libgbseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgbseq.so' 'c++/BUILD/lib/libgene_info.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgene_info.so' 'c++/BUILD/lib/libgeneral.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgeneral.so' 'c++/BUILD/lib/libgenome_collection.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgenome_collection.so' 'c++/BUILD/lib/libid1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid1.so' 'c++/BUILD/lib/libid2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid2.so' 'c++/BUILD/lib/libmedlars.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedlars.so' 'c++/BUILD/lib/libmedline.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedline.so' 'c++/BUILD/lib/libmla.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmla.so' 'c++/BUILD/lib/libmlacli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmlacli.so' 'c++/BUILD/lib/libncbi_xloader_blastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so' 'c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so' 'c++/BUILD/lib/libncbi_xloader_genbank.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_genbank.so' 'c++/BUILD/lib/libncbi_xreader.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader.so' 'c++/BUILD/lib/libncbi_xreader_cache.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_cache.so' 'c++/BUILD/lib/libncbi_xreader_id1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id1.so' 'c++/BUILD/lib/libncbi_xreader_id2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id2.so' 'c++/BUILD/lib/libpub.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpub.so' 'c++/BUILD/lib/libpubmed.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpubmed.so' 'c++/BUILD/lib/libscoremat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libscoremat.so' 'c++/BUILD/lib/libseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseq.so' 'c++/BUILD/lib/libseqcode.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqcode.so' 'c++/BUILD/lib/libseqdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqdb.so' 'c++/BUILD/lib/libseqedit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqedit.so' 'c++/BUILD/lib/libseqmasks_io.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqmasks_io.so' 'c++/BUILD/lib/libseqset.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqset.so' 'c++/BUILD/lib/libseqsplit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqsplit.so' 'c++/BUILD/lib/libsequtil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsequtil.so' 'c++/BUILD/lib/libsubmit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsubmit.so' 'c++/BUILD/lib/libtables.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtables.so' 'c++/BUILD/lib/libtaxon1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon1.so' 'c++/BUILD/lib/libtaxon3.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon3.so' 'c++/BUILD/lib/libvalid.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libvalid.so' 'c++/BUILD/lib/libwritedb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libwritedb.so' 'c++/BUILD/lib/libxalgoblastdbindex.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgoblastdbindex.so' 'c++/BUILD/lib/libxalgodustmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgodustmask.so' 'c++/BUILD/lib/libxalgosegmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgosegmask.so' 'c++/BUILD/lib/libxalgowinmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgowinmask.so' 'c++/BUILD/lib/libxalnmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalnmgr.so' 'c++/BUILD/lib/libxblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblast.so' 'c++/BUILD/lib/libxblastformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblastformat.so' 'c++/BUILD/lib/libxcgi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcgi.so' 'c++/BUILD/lib/libxcleanup.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcleanup.so' 'c++/BUILD/lib/libxcompress.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcompress.so' 'c++/BUILD/lib/libxconnect.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxconnect.so' 'c++/BUILD/lib/libxformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxformat.so' 'c++/BUILD/lib/libxhtml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxhtml.so' 'c++/BUILD/lib/libxncbi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxncbi.so' 'c++/BUILD/lib/libxnetblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblast.so' 'c++/BUILD/lib/libxnetblastcli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblastcli.so' 'c++/BUILD/lib/libxobjmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjmgr.so' 'c++/BUILD/lib/libxobjread.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjread.so' 'c++/BUILD/lib/libxobjutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjutil.so' 'c++/BUILD/lib/libxregexp.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxregexp.so' 'c++/BUILD/lib/libxser.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxser.so' 'c++/BUILD/lib/libxutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxutil.so' make[1]: Leaving directory '/build/ncbi-blast+-aEy0mk/ncbi-blast+-2.4.0' dh_installdocs -a -O-Dc\+\+ dh_installchangelogs -a -O-Dc\+\+ dh_installexamples -a -O-Dc\+\+ dh_installman -a -O-Dc\+\+ dh_installcatalogs -a -O-Dc\+\+ dh_installcron -a -O-Dc\+\+ dh_installdebconf -a -O-Dc\+\+ dh_installemacsen -a -O-Dc\+\+ dh_installifupdown -a -O-Dc\+\+ dh_installinfo -a -O-Dc\+\+ dh_installinit -a -O-Dc\+\+ dh_installmenu -a -O-Dc\+\+ dh_installmime -a -O-Dc\+\+ dh_installmodules -a -O-Dc\+\+ dh_installlogcheck -a -O-Dc\+\+ dh_installlogrotate -a -O-Dc\+\+ dh_installpam -a -O-Dc\+\+ dh_installppp -a -O-Dc\+\+ dh_installudev -a -O-Dc\+\+ dh_installgsettings -a -O-Dc\+\+ dh_bugfiles -a -O-Dc\+\+ dh_ucf -a -O-Dc\+\+ dh_lintian -a -O-Dc\+\+ dh_gconf -a -O-Dc\+\+ dh_icons -a -O-Dc\+\+ dh_perl -a -O-Dc\+\+ dh_usrlocal -a -O-Dc\+\+ dh_link -a -O-Dc\+\+ dh_installwm -a -O-Dc\+\+ dh_installxfonts -a -O-Dc\+\+ dh_strip_nondeterminism -a -O-Dc\+\+ dh_compress -a -O-Dc\+\+ dh_fixperms -a -O-Dc\+\+ dh_strip -a -O-Dc\+\+ dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform s390x: ncbi-blast+ dh_strip debug symbol extraction: packages to act on: ncbi-blast+ dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package ncbi-blast+: unused substitution variable ${perl:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a -O-Dc\+\+ dh_shlibdeps -a -O-Dc\+\+ dh_installdeb -a -O-Dc\+\+ dh_gencontrol -a -O-Dc\+\+ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform s390x: ncbi-blast+ dh_gencontrol debug symbol wrapper: packages to act on: ncbi-blast+ dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package ncbi-blast+ (pkgdir debian/ncbi-blast+, ddeb package dir debian/ncbi-blast+-dbgsym) dh_gencontrol debug symbol wrapper: building ncbi-blast+-dbgsym_2.4.0-3_s390x.ddeb dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.4.0-3_s390x.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile ncbi-blast+-dbgsym_2.4.0-3_s390x.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O-Dc\+\+ dh_builddeb -a -O-Dc\+\+ INFO: pkgstriptranslations version 130 pkgstriptranslations: processing ncbi-blast+ (in debian/ncbi-blast+); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+/DEBIAN/control, package ncbi-blast+, directory debian/ncbi-blast+ pkgstripfiles: Truncating usr/share/doc/ncbi-blast+/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncbi-blast+ ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.4.0-3_s390x.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../ncbi-blast+_2.4.0-3_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build ncbi-blast+-2.4.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20160806-1744 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ncbi-blast+_2.4.0-3_s390x.changes: ---------------------------------- Format: 1.8 Date: Fri, 05 Aug 2016 19:47:24 -0400 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy Architecture: s390x Version: 2.4.0-3 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Aaron M. Ucko Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 833538 833539 833541 Changes: ncbi-blast+ (2.4.0-3) unstable; urgency=medium . * debian/rules: - Properly build (but don't install) run_with_lock. (Closes: #833538.) - Comment out nostrip check, which yielded a useless dbgsym package. * Reinstate and refresh the hurd_fixes patch, which mostly still applies. (Closes: #833539.) * Add a new support_x32 patch to avoid picking up wrong inline assembly. (Closes: #833541.) Checksums-Sha1: f6396a1745c626f5cf6fc7479a957d45dfdf6646 98075382 ncbi-blast+-dbgsym_2.4.0-3_s390x.ddeb ab85842885681b349f22e83a79735cb8c7932821 8282368 ncbi-blast+_2.4.0-3_s390x.deb Checksums-Sha256: 926915acc60a2ce6c1ef2f04ead02261f4650c6006701b820a25eec197c61e4d 98075382 ncbi-blast+-dbgsym_2.4.0-3_s390x.ddeb eee1e32f94551321e69079294a6c8c3bfbe34c336b1d6bd580f44293d3aa9d0c 8282368 ncbi-blast+_2.4.0-3_s390x.deb Files: f858148a707f52a9be3deb43199fd7ab 98075382 science extra ncbi-blast+-dbgsym_2.4.0-3_s390x.ddeb 6a7090f253fa1562920c755c8838b89f 8282368 science optional ncbi-blast+_2.4.0-3_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ncbi-blast+_2.4.0-3_s390x.deb ----------------------------- new debian package, version 2.0. size 8282368 bytes: control archive=3764 bytes. 1286 bytes, 25 lines control 6606 bytes, 100 lines md5sums Package: ncbi-blast+ Version: 2.4.0-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 39183 Depends: ncbi-data, python, perl:any, libbz2-1.0, libc6 (>= 2.15), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libpcre3, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. drwxr-xr-x root/root 0 2016-08-05 23:47 ./ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/bin/ -rwxr-xr-x root/root 227744 2016-08-05 23:47 ./usr/bin/blast_formatter -rwxr-xr-x root/root 104760 2016-08-05 23:47 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 153872 2016-08-05 23:47 ./usr/bin/blastdbcheck -rwxr-xr-x root/root 125312 2016-08-05 23:47 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 67792 2016-08-05 23:47 ./usr/bin/blastdbcp -rwxr-xr-x root/root 190872 2016-08-05 23:47 ./usr/bin/blastn -rwxr-xr-x root/root 186776 2016-08-05 23:47 ./usr/bin/blastp -rwxr-xr-x root/root 186776 2016-08-05 23:47 ./usr/bin/blastx -rwxr-xr-x root/root 67760 2016-08-05 23:47 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 215448 2016-08-05 23:47 ./usr/bin/deltablast -rwxr-xr-x root/root 43168 2016-08-05 23:47 ./usr/bin/dustmasker -rwxr-xr-x root/root 30888 2016-08-05 23:47 ./usr/bin/gene_info_reader -rwxr-xr-x root/root 51346 2016-08-05 23:47 ./usr/bin/legacy_blast -rwxr-xr-x root/root 190744 2016-08-05 23:47 ./usr/bin/makeblastdb -rwxr-xr-x root/root 55456 2016-08-05 23:47 ./usr/bin/makembindex -rwxr-xr-x root/root 149768 2016-08-05 23:47 ./usr/bin/makeprofiledb -rwxr-xr-x root/root 219544 2016-08-05 23:47 ./usr/bin/psiblast -rwxr-xr-x root/root 186776 2016-08-05 23:47 ./usr/bin/rpsblast+ -rwxr-xr-x root/root 186776 2016-08-05 23:47 ./usr/bin/rpstblastn -rwxr-xr-x root/root 190872 2016-08-05 23:47 ./usr/bin/seedtop+ -rwxr-xr-x root/root 43176 2016-08-05 23:47 ./usr/bin/segmasker -rwxr-xr-x root/root 43184 2016-08-05 23:47 ./usr/bin/seqdb_perf -rwxr-xr-x root/root 199064 2016-08-05 23:47 ./usr/bin/tblastn -rwxr-xr-x root/root 186776 2016-08-05 23:47 ./usr/bin/tblastx -rwxr-xr-x root/root 12487 2016-08-05 23:47 ./usr/bin/update_blastdb -rwxr-xr-x root/root 51360 2016-08-05 23:47 ./usr/bin/windowmasker -rwxr-xr-x root/root 5950 2016-08-05 23:47 ./usr/bin/windowmasker_2.2.22_adapter drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/lib/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/lib/ncbi-blast+/ -rw-r--r-- root/root 985112 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libalign_format.so -rw-r--r-- root/root 358432 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libbiblio.so -rw-r--r-- root/root 648264 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libblast.so -rw-r--r-- root/root 59408 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libblast_services.so -rw-r--r-- root/root 88080 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libblastdb.so -rw-r--r-- root/root 104472 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libblastdb_format.so -rw-r--r-- root/root 563368 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libblastinput.so -rw-r--r-- root/root 79888 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libblastxml.so -rw-r--r-- root/root 182288 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libblastxml2.so -rw-r--r-- root/root 84072 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libcomposition_adjustment.so -rw-r--r-- root/root 46944 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libcreaders.so -rw-r--r-- root/root 239632 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libgbseq.so -rw-r--r-- root/root 71688 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libgene_info.so -rw-r--r-- root/root 412080 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libgeneral.so -rw-r--r-- root/root 370704 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libgenome_collection.so -rw-r--r-- root/root 100368 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libid1.so -rw-r--r-- root/root 309264 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libid2.so -rw-r--r-- root/root 34832 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libmedlars.so -rw-r--r-- root/root 124944 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libmedline.so -rw-r--r-- root/root 75792 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libmla.so -rw-r--r-- root/root 51208 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libmlacli.so -rw-r--r-- root/root 125000 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so -rw-r--r-- root/root 120856 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so -rw-r--r-- root/root 215352 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libncbi_xloader_genbank.so -rw-r--r-- root/root 970880 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libncbi_xreader.so -rw-r--r-- root/root 231584 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libncbi_xreader_cache.so -rw-r--r-- root/root 141760 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libncbi_xreader_id1.so -rw-r--r-- root/root 104936 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libncbi_xreader_id2.so -rw-r--r-- root/root 149520 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libpub.so -rw-r--r-- root/root 34832 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libpubmed.so -rw-r--r-- root/root 157712 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libscoremat.so -rw-r--r-- root/root 6243784 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libseq.so -rw-r--r-- root/root 71696 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libseqcode.so -rw-r--r-- root/root 764088 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libseqdb.so -rw-r--r-- root/root 284688 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libseqedit.so -rw-r--r-- root/root 55384 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libseqmasks_io.so -rw-r--r-- root/root 157720 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libseqset.so -rw-r--r-- root/root 346128 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libseqsplit.so -rw-r--r-- root/root 84080 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libsequtil.so -rw-r--r-- root/root 92176 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libsubmit.so -rw-r--r-- root/root 14248 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libtables.so -rw-r--r-- root/root 272768 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libtaxon1.so -rw-r--r-- root/root 170008 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libtaxon3.so -rw-r--r-- root/root 194632 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libvalid.so -rw-r--r-- root/root 399408 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libwritedb.so -rw-r--r-- root/root 247824 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxalgoblastdbindex.so -rw-r--r-- root/root 26552 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxalgodustmask.so -rw-r--r-- root/root 14264 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxalgosegmask.so -rw-r--r-- root/root 342096 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxalgowinmask.so -rw-r--r-- root/root 706808 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxalnmgr.so -rw-r--r-- root/root 1673496 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxblast.so -rw-r--r-- root/root 460832 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxblastformat.so -rw-r--r-- root/root 700768 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxcgi.so -rw-r--r-- root/root 1080008 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxcleanup.so -rw-r--r-- root/root 534576 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxcompress.so -rw-r--r-- root/root 862928 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxconnect.so -rw-r--r-- root/root 1652808 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxformat.so -rw-r--r-- root/root 456880 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxhtml.so -rw-r--r-- root/root 2571496 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxncbi.so -rw-r--r-- root/root 657536 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxnetblast.so -rw-r--r-- root/root 51208 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxnetblastcli.so -rw-r--r-- root/root 3074984 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxobjmgr.so -rw-r--r-- root/root 1755936 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxobjread.so -rw-r--r-- root/root 833952 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxobjutil.so -rw-r--r-- root/root 38944 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxregexp.so -rw-r--r-- root/root 1528384 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxser.so -rw-r--r-- root/root 975936 2016-08-05 23:47 ./usr/lib/ncbi-blast+/libxutil.so drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/doc/ncbi-blast+/ -rw-r--r-- root/root 504 2016-08-02 15:48 ./usr/share/doc/ncbi-blast+/README.Debian -rw-r--r-- root/root 1515 2016-08-05 23:47 ./usr/share/doc/ncbi-blast+/changelog.Debian.gz -rw-r--r-- root/root 9215 2016-08-02 15:48 ./usr/share/doc/ncbi-blast+/copyright drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/doc/ncbi-blast+/examples/ -rw-r--r-- root/root 760 2016-08-02 15:48 ./usr/share/doc/ncbi-blast+/examples/test.fa -rw-r--r-- root/root 2125 2016-08-02 15:48 ./usr/share/doc/ncbi-blast+/examples/testdatabase.fa drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/man/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/man/man1/ -rw-r--r-- root/root 760 2016-08-05 23:47 ./usr/share/man/man1/ncbi-blast+.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 3143792 Build-Time: 1246 Distribution: yakkety-proposed Host Architecture: s390x Install-Time: 32 Job: ncbi-blast+_2.4.0-3.dsc Machine Architecture: s390x Package: ncbi-blast+ Package-Time: 1280 Source-Version: 2.4.0-3 Space: 3143792 Status: successful Version: 2.4.0-3 -------------------------------------------------------------------------------- Finished at 20160806-1744 Build needed 00:21:20, 3143792k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-10573704'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-10573704/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-10573704'] Unmounting chroot for build PACKAGEBUILD-10573704... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-10573704'] Removing build PACKAGEBUILD-10573704